Query psy12150
Match_columns 456
No_of_seqs 337 out of 3083
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 20:01:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12150.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12150hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0991|consensus 100.0 2.1E-53 4.6E-58 373.7 26.3 321 25-455 7-330 (333)
2 KOG0989|consensus 100.0 3.4E-50 7.4E-55 368.1 31.5 322 30-451 21-344 (346)
3 PLN03025 replication factor C 100.0 3.6E-48 7.8E-53 378.8 35.7 316 33-455 1-316 (319)
4 PRK06305 DNA polymerase III su 100.0 1.9E-41 4.1E-46 343.1 35.9 319 32-452 4-350 (451)
5 PRK08451 DNA polymerase III su 100.0 6.4E-41 1.4E-45 340.3 36.6 310 33-452 2-336 (535)
6 PRK14954 DNA polymerase III su 100.0 6.5E-41 1.4E-45 347.4 36.7 330 33-452 4-374 (620)
7 PRK14952 DNA polymerase III su 100.0 1.3E-40 2.8E-45 343.0 38.3 263 34-305 2-293 (584)
8 PRK00440 rfc replication facto 100.0 1.6E-40 3.5E-45 326.1 37.2 313 31-451 3-316 (319)
9 PRK14955 DNA polymerase III su 100.0 6.1E-41 1.3E-45 336.3 34.8 329 33-451 4-373 (397)
10 PRK14971 DNA polymerase III su 100.0 1E-40 2.2E-45 348.2 36.3 330 33-451 5-362 (614)
11 PRK09111 DNA polymerase III su 100.0 6.2E-40 1.3E-44 339.8 38.4 331 32-451 11-374 (598)
12 PRK06645 DNA polymerase III su 100.0 5E-40 1.1E-44 333.9 36.9 268 29-305 5-305 (507)
13 PRK14970 DNA polymerase III su 100.0 1.2E-39 2.5E-44 325.6 35.7 332 31-451 3-349 (367)
14 PRK07764 DNA polymerase III su 100.0 1.3E-39 2.8E-44 347.4 36.9 334 33-451 3-365 (824)
15 PRK14965 DNA polymerase III su 100.0 5.7E-40 1.2E-44 341.9 33.4 331 33-451 4-361 (576)
16 KOG0990|consensus 100.0 1.2E-40 2.6E-45 306.9 22.2 322 29-452 25-351 (360)
17 PRK14956 DNA polymerase III su 100.0 2.1E-38 4.4E-43 315.8 38.2 270 31-310 4-301 (484)
18 TIGR02397 dnaX_nterm DNA polym 100.0 9E-39 2E-43 318.4 35.6 327 33-449 2-355 (355)
19 PRK05563 DNA polymerase III su 100.0 1E-38 2.3E-43 330.9 36.9 329 33-450 4-359 (559)
20 PRK14964 DNA polymerase III su 100.0 8.8E-39 1.9E-43 322.1 35.0 260 33-303 1-283 (491)
21 PRK12402 replication factor C 100.0 2.1E-38 4.5E-43 313.6 36.1 307 32-448 2-336 (337)
22 PRK14963 DNA polymerase III su 100.0 2.7E-38 5.8E-43 322.8 35.8 260 35-305 4-289 (504)
23 PRK14961 DNA polymerase III su 100.0 4E-38 8.8E-43 312.5 35.9 330 32-451 3-360 (363)
24 PRK06647 DNA polymerase III su 100.0 1.9E-38 4.2E-43 327.5 34.6 328 33-451 4-358 (563)
25 PRK14958 DNA polymerase III su 100.0 2.8E-38 6.1E-43 323.4 33.8 264 32-305 3-293 (509)
26 PRK07003 DNA polymerase III su 100.0 9.8E-38 2.1E-42 321.0 36.1 264 32-305 3-293 (830)
27 PRK14960 DNA polymerase III su 100.0 1E-37 2.2E-42 318.0 35.8 263 33-305 3-292 (702)
28 PRK14950 DNA polymerase III su 100.0 1.5E-37 3.3E-42 325.3 37.3 330 33-451 4-361 (585)
29 PRK14962 DNA polymerase III su 100.0 5.3E-38 1.1E-42 318.2 31.8 263 33-305 2-287 (472)
30 PRK14953 DNA polymerase III su 100.0 2.8E-37 6E-42 314.4 36.3 264 32-305 3-293 (486)
31 PRK14949 DNA polymerase III su 100.0 2.8E-37 6.1E-42 323.3 36.1 332 32-451 3-357 (944)
32 PRK07133 DNA polymerase III su 100.0 2.9E-37 6.4E-42 320.8 36.0 328 31-451 4-355 (725)
33 PRK14959 DNA polymerase III su 100.0 6.1E-37 1.3E-41 314.3 35.8 265 31-305 2-293 (624)
34 PRK14951 DNA polymerase III su 100.0 1E-36 2.2E-41 315.0 36.6 264 32-305 3-294 (618)
35 PRK08691 DNA polymerase III su 100.0 1.1E-36 2.3E-41 313.6 36.0 263 32-304 3-288 (709)
36 PRK12323 DNA polymerase III su 100.0 1E-36 2.2E-41 310.0 33.6 258 32-299 3-288 (700)
37 PRK05896 DNA polymerase III su 100.0 3E-37 6.5E-42 315.0 29.6 270 32-311 3-299 (605)
38 PRK14957 DNA polymerase III su 100.0 4.4E-36 9.5E-41 306.7 38.2 262 32-303 3-287 (546)
39 PRK07994 DNA polymerase III su 100.0 3.8E-36 8.2E-41 311.3 37.0 330 32-451 3-359 (647)
40 PRK14948 DNA polymerase III su 100.0 7.4E-36 1.6E-40 311.6 36.8 331 32-451 3-362 (620)
41 PRK14969 DNA polymerase III su 100.0 9.5E-36 2.1E-40 306.8 34.4 260 32-301 3-285 (527)
42 COG2812 DnaX DNA polymerase II 100.0 1.1E-35 2.3E-40 298.4 29.9 258 33-300 4-284 (515)
43 PRK04132 replication factor C 100.0 2.4E-33 5.3E-38 297.0 32.6 275 69-451 567-844 (846)
44 KOG2035|consensus 100.0 5.9E-32 1.3E-36 244.2 29.2 318 33-453 1-344 (351)
45 PHA02544 44 clamp loader, smal 100.0 1.7E-31 3.7E-36 261.7 34.4 299 29-451 5-312 (316)
46 COG2256 MGS1 ATPase related to 100.0 5.9E-31 1.3E-35 250.3 24.8 254 33-303 12-291 (436)
47 PRK04195 replication factor C 100.0 4.8E-29 1E-33 256.7 33.8 251 32-301 1-264 (482)
48 PRK13342 recombination factor 100.0 8.5E-29 1.8E-33 250.2 28.8 253 34-305 1-274 (413)
49 PRK13341 recombination factor 100.0 5.1E-28 1.1E-32 255.9 26.6 259 31-305 14-302 (725)
50 PRK05564 DNA polymerase III su 100.0 3.1E-26 6.7E-31 223.6 30.4 298 43-450 2-312 (313)
51 PRK05907 hypothetical protein; 99.9 3E-25 6.6E-30 213.7 27.3 287 54-450 7-310 (311)
52 PF05496 RuvB_N: Holliday junc 99.9 2.3E-26 5E-31 206.0 18.1 200 27-246 6-229 (233)
53 KOG2028|consensus 99.9 9E-26 1.9E-30 211.2 19.9 260 31-303 124-421 (554)
54 PRK07914 hypothetical protein; 99.9 4.1E-24 8.8E-29 209.1 29.7 290 68-453 7-318 (320)
55 PRK07452 DNA polymerase III su 99.9 5.2E-24 1.1E-28 209.5 30.4 295 67-452 2-325 (326)
56 PRK07940 DNA polymerase III su 99.9 1.8E-23 3.8E-28 207.7 29.3 184 43-240 3-215 (394)
57 PRK05629 hypothetical protein; 99.9 2.2E-23 4.8E-28 203.8 29.5 299 66-451 5-316 (318)
58 PRK06585 holA DNA polymerase I 99.9 3.2E-22 6.9E-27 198.2 32.8 303 57-451 9-337 (343)
59 PRK08487 DNA polymerase III su 99.9 7.1E-22 1.5E-26 193.9 31.1 231 55-305 4-247 (328)
60 PRK05574 holA DNA polymerase I 99.9 1.1E-21 2.5E-26 194.2 31.0 303 55-450 6-338 (340)
61 PRK09112 DNA polymerase III su 99.9 2.2E-22 4.8E-27 197.3 24.3 193 38-241 16-243 (351)
62 PRK00080 ruvB Holliday junctio 99.9 1.2E-22 2.7E-27 199.5 21.6 212 30-261 10-248 (328)
63 COG0470 HolB ATPase involved i 99.9 3.1E-22 6.8E-27 196.9 23.9 290 45-452 1-318 (325)
64 PRK08058 DNA polymerase III su 99.9 3.3E-21 7.1E-26 188.8 28.6 182 43-240 3-206 (329)
65 TIGR02902 spore_lonB ATP-depen 99.9 2.8E-22 6E-27 207.7 20.0 231 32-263 52-332 (531)
66 KOG1969|consensus 99.9 1.9E-21 4E-26 196.7 24.6 220 31-260 257-534 (877)
67 PRK07399 DNA polymerase III su 99.9 2.8E-22 6.1E-27 194.0 18.1 187 43-242 2-225 (314)
68 TIGR01128 holA DNA polymerase 99.9 8.8E-21 1.9E-25 184.7 28.6 277 82-449 3-302 (302)
69 PRK07993 DNA polymerase III su 99.9 2.8E-20 6.1E-25 181.4 29.0 177 50-240 7-206 (334)
70 PRK07471 DNA polymerase III su 99.9 2.1E-21 4.5E-26 191.5 20.2 189 39-240 13-240 (365)
71 TIGR00678 holB DNA polymerase 99.9 1.3E-21 2.8E-26 177.1 16.9 165 55-235 2-188 (188)
72 TIGR00635 ruvB Holliday juncti 99.9 3.3E-21 7.1E-26 188.0 21.0 201 42-262 1-228 (305)
73 COG2255 RuvB Holliday junction 99.9 4.4E-21 9.4E-26 175.1 19.4 209 34-262 15-250 (332)
74 PRK05707 DNA polymerase III su 99.9 4.8E-19 1E-23 172.4 32.1 171 57-240 12-205 (328)
75 COG1466 HolA DNA polymerase II 99.9 4.5E-19 9.8E-24 174.3 29.5 299 56-448 5-329 (334)
76 PRK06871 DNA polymerase III su 99.9 3.9E-19 8.4E-24 171.7 28.3 178 49-240 6-205 (325)
77 PRK07132 DNA polymerase III su 99.8 3.5E-18 7.6E-23 163.6 31.7 175 51-240 2-186 (299)
78 TIGR00602 rad24 checkpoint pro 99.8 2E-19 4.3E-24 187.1 18.6 211 29-244 68-329 (637)
79 PRK08769 DNA polymerase III su 99.8 4.9E-19 1.1E-23 170.8 19.2 177 49-240 8-210 (319)
80 PRK08084 DNA replication initi 99.8 1E-18 2.2E-23 163.3 20.5 200 43-261 20-234 (235)
81 PF13177 DNA_pol3_delta2: DNA 99.8 2.3E-19 5E-24 157.7 14.2 140 49-197 1-162 (162)
82 PTZ00112 origin recognition co 99.8 3.2E-18 7E-23 177.9 24.8 235 37-274 750-1017(1164)
83 PRK06964 DNA polymerase III su 99.8 5.6E-17 1.2E-21 157.8 31.8 168 53-239 9-226 (342)
84 PRK06090 DNA polymerase III su 99.8 5.8E-17 1.3E-21 156.2 31.3 175 49-240 7-203 (319)
85 TIGR02928 orc1/cdc6 family rep 99.8 1.1E-17 2.3E-22 167.4 27.3 227 33-263 6-274 (365)
86 PRK06893 DNA replication initi 99.8 1.4E-18 3.1E-23 161.8 18.7 203 40-261 11-228 (229)
87 PRK08903 DnaA regulatory inact 99.8 5.3E-18 1.1E-22 158.2 21.2 200 40-262 13-225 (227)
88 PRK05917 DNA polymerase III su 99.8 7.5E-17 1.6E-21 152.5 28.9 157 53-233 5-176 (290)
89 PRK00411 cdc6 cell division co 99.8 3.8E-17 8.1E-22 165.2 28.9 229 32-263 20-282 (394)
90 TIGR02881 spore_V_K stage V sp 99.8 3.7E-18 8.1E-23 162.4 19.2 190 43-244 4-236 (261)
91 PRK08727 hypothetical protein; 99.8 6.6E-18 1.4E-22 157.6 20.2 211 33-262 6-230 (233)
92 TIGR03420 DnaA_homol_Hda DnaA 99.8 9.2E-18 2E-22 156.4 17.3 201 41-260 11-225 (226)
93 COG1223 Predicted ATPase (AAA+ 99.8 1.1E-17 2.4E-22 150.7 16.3 212 35-262 111-354 (368)
94 PF03215 Rad17: Rad17 cell cyc 99.8 1.4E-17 3.1E-22 170.4 19.4 211 29-244 3-269 (519)
95 COG1222 RPT1 ATP-dependent 26S 99.8 2.3E-17 4.9E-22 155.5 18.6 202 42-262 148-391 (406)
96 TIGR02903 spore_lon_C ATP-depe 99.8 6E-17 1.3E-21 170.5 22.9 232 31-264 140-431 (615)
97 COG1474 CDC6 Cdc6-related prot 99.7 8.6E-16 1.9E-20 151.4 27.3 238 34-274 9-276 (366)
98 PRK06620 hypothetical protein; 99.7 6.5E-17 1.4E-21 148.5 17.4 192 33-260 7-213 (214)
99 KOG1970|consensus 99.7 5.8E-17 1.3E-21 160.0 16.8 211 29-244 66-321 (634)
100 PRK08699 DNA polymerase III su 99.7 4.1E-15 8.9E-20 144.7 29.7 136 63-207 17-183 (325)
101 PRK05642 DNA replication initi 99.7 4.1E-16 8.9E-21 145.6 21.2 210 33-261 6-233 (234)
102 CHL00181 cbbX CbbX; Provisiona 99.7 1.8E-16 3.9E-21 151.9 18.8 188 46-245 24-253 (287)
103 PRK07276 DNA polymerase III su 99.7 3.6E-15 7.9E-20 141.6 27.3 172 49-239 6-198 (290)
104 PRK14087 dnaA chromosomal repl 99.7 2E-15 4.3E-20 153.5 26.0 209 41-262 111-347 (450)
105 PRK00149 dnaA chromosomal repl 99.7 3.5E-15 7.6E-20 152.8 27.6 207 43-262 120-348 (450)
106 TIGR02880 cbbX_cfxQ probable R 99.7 6.8E-16 1.5E-20 148.1 19.2 188 46-245 23-252 (284)
107 PRK09087 hypothetical protein; 99.7 7.6E-16 1.7E-20 142.6 18.0 190 43-262 19-221 (226)
108 TIGR00362 DnaA chromosomal rep 99.7 7.6E-15 1.7E-19 148.6 26.2 207 43-262 108-336 (405)
109 PRK05818 DNA polymerase III su 99.7 2.1E-15 4.5E-20 139.6 19.1 211 66-294 6-249 (261)
110 PRK14086 dnaA chromosomal repl 99.7 3.4E-14 7.3E-19 146.4 29.4 208 43-261 286-513 (617)
111 TIGR02639 ClpA ATP-dependent C 99.7 1.7E-15 3.7E-20 163.5 18.9 221 30-261 167-427 (731)
112 PRK12422 chromosomal replicati 99.7 3.2E-14 6.9E-19 144.2 26.5 208 39-261 104-341 (445)
113 CHL00195 ycf46 Ycf46; Provisio 99.7 3.9E-15 8.5E-20 151.7 19.5 211 41-265 224-465 (489)
114 TIGR01241 FtsH_fam ATP-depende 99.7 5.5E-15 1.2E-19 153.1 20.8 214 34-262 44-294 (495)
115 KOG0730|consensus 99.6 2.8E-15 6.1E-20 151.4 16.3 202 41-262 430-673 (693)
116 PTZ00361 26 proteosome regulat 99.6 5.9E-15 1.3E-19 148.2 17.9 216 32-262 170-423 (438)
117 PRK03992 proteasome-activating 99.6 8.3E-15 1.8E-19 146.8 18.5 207 42-263 128-372 (389)
118 PF00308 Bac_DnaA: Bacterial d 99.6 3.9E-15 8.5E-20 137.4 14.3 191 43-246 6-216 (219)
119 PRK14088 dnaA chromosomal repl 99.6 1.6E-14 3.5E-19 146.7 19.8 207 43-261 103-330 (440)
120 COG1224 TIP49 DNA helicase TIP 99.6 3.3E-14 7.2E-19 133.9 20.1 122 139-261 293-430 (450)
121 CHL00176 ftsH cell division pr 99.6 1.9E-14 4.1E-19 151.2 20.1 207 41-262 179-422 (638)
122 TIGR03345 VI_ClpV1 type VI sec 99.6 1.4E-14 3E-19 157.6 18.6 207 30-246 172-410 (852)
123 PTZ00454 26S protease regulato 99.6 2.4E-14 5.1E-19 143.0 18.5 207 41-262 141-385 (398)
124 PF08542 Rep_fac_C: Replicatio 99.6 6.2E-15 1.3E-19 116.2 11.2 86 362-448 1-89 (89)
125 KOG0733|consensus 99.6 1.4E-14 3E-19 144.6 15.6 185 43-242 188-406 (802)
126 TIGR01242 26Sp45 26S proteasom 99.6 5E-14 1.1E-18 140.5 17.3 207 41-262 118-362 (364)
127 COG0593 DnaA ATPase involved i 99.6 7E-14 1.5E-18 137.5 17.3 215 34-263 79-313 (408)
128 TIGR00763 lon ATP-dependent pr 99.6 1.2E-13 2.6E-18 150.0 18.4 203 46-263 321-586 (775)
129 KOG0738|consensus 99.5 7.3E-14 1.6E-18 132.9 14.0 170 43-230 210-415 (491)
130 TIGR03015 pepcterm_ATPase puta 99.5 1E-12 2.3E-17 125.7 22.3 219 32-262 10-265 (269)
131 TIGR01243 CDC48 AAA family ATP 99.5 1.5E-13 3.3E-18 148.9 17.7 174 42-231 450-656 (733)
132 KOG0727|consensus 99.5 7.1E-13 1.5E-17 119.4 17.5 201 43-261 153-394 (408)
133 KOG0734|consensus 99.5 3.1E-13 6.7E-18 133.1 16.1 209 37-261 296-539 (752)
134 PF06068 TIP49: TIP49 C-termin 99.5 3.7E-13 8E-18 129.0 16.2 102 140-242 281-395 (398)
135 TIGR01817 nifA Nif-specific re 99.5 3.6E-13 7.8E-18 141.1 17.7 220 35-257 186-439 (534)
136 TIGR03689 pup_AAA proteasome A 99.5 3.2E-13 7E-18 137.6 16.5 181 33-219 170-387 (512)
137 COG2204 AtoC Response regulato 99.5 1.1E-12 2.3E-17 131.1 19.5 213 42-258 138-386 (464)
138 KOG0731|consensus 99.5 9.6E-13 2.1E-17 137.1 19.3 209 39-261 305-551 (774)
139 KOG0730|consensus 99.5 8E-13 1.7E-17 133.9 17.3 257 40-367 180-469 (693)
140 PRK10787 DNA-binding ATP-depen 99.5 7.6E-13 1.6E-17 142.6 18.1 225 30-264 298-583 (784)
141 PLN00020 ribulose bisphosphate 99.5 5.2E-13 1.1E-17 128.3 14.6 151 65-231 146-331 (413)
142 COG3829 RocR Transcriptional r 99.5 1.5E-12 3.2E-17 129.9 18.1 216 39-257 239-491 (560)
143 TIGR02640 gas_vesic_GvpN gas v 99.5 4.8E-12 1E-16 120.3 20.9 199 51-261 8-255 (262)
144 PF05673 DUF815: Protein of un 99.5 1.8E-12 3.9E-17 118.4 17.1 190 37-243 19-246 (249)
145 KOG0733|consensus 99.5 8.4E-13 1.8E-17 132.1 16.1 186 43-242 509-732 (802)
146 COG1221 PspF Transcriptional r 99.5 8.9E-13 1.9E-17 129.4 16.0 209 42-253 75-316 (403)
147 PRK06581 DNA polymerase III su 99.5 2.5E-12 5.5E-17 116.5 17.5 177 54-242 2-191 (263)
148 KOG0739|consensus 99.5 4.3E-13 9.3E-18 123.5 12.6 175 43-231 131-334 (439)
149 TIGR02974 phageshock_pspF psp 99.5 1.2E-12 2.7E-17 128.1 16.7 206 47-255 1-242 (329)
150 KOG1968|consensus 99.5 3E-13 6.5E-18 144.8 13.3 207 32-245 307-538 (871)
151 PRK11034 clpA ATP-dependent Cl 99.5 1.3E-12 2.8E-17 139.8 17.2 211 40-261 181-431 (758)
152 TIGR03346 chaperone_ClpB ATP-d 99.5 8E-13 1.7E-17 144.9 15.9 207 30-246 158-396 (852)
153 TIGR01243 CDC48 AAA family ATP 99.5 2.6E-12 5.6E-17 139.3 19.4 183 41-239 174-388 (733)
154 KOG1942|consensus 99.5 6.3E-12 1.4E-16 115.6 18.3 122 139-261 298-436 (456)
155 KOG0737|consensus 99.4 6.5E-13 1.4E-17 126.3 12.1 188 43-245 90-309 (386)
156 TIGR03345 VI_ClpV1 type VI sec 99.4 2.6E-12 5.6E-17 140.1 18.3 193 45-243 566-827 (852)
157 KOG0743|consensus 99.4 3E-12 6.5E-17 125.1 16.7 160 31-210 185-384 (457)
158 TIGR02329 propionate_PrpR prop 99.4 3.1E-12 6.8E-17 132.0 17.5 215 42-259 209-466 (526)
159 PRK11608 pspF phage shock prot 99.4 4.6E-12 1E-16 124.1 17.9 210 44-256 5-250 (326)
160 PRK13407 bchI magnesium chelat 99.4 6.4E-12 1.4E-16 122.3 17.9 219 40-263 3-306 (334)
161 PRK15424 propionate catabolism 99.4 4.3E-12 9.2E-17 130.9 17.6 215 42-257 216-479 (538)
162 PRK10865 protein disaggregatio 99.4 8.6E-13 1.9E-17 144.2 13.2 207 30-246 163-401 (857)
163 CHL00095 clpC Clp protease ATP 99.4 2.9E-12 6.3E-17 140.1 17.0 201 35-246 169-401 (821)
164 PRK10733 hflB ATP-dependent me 99.4 6.4E-12 1.4E-16 133.6 19.1 208 34-260 141-389 (644)
165 COG0464 SpoVK ATPases of the A 99.4 7.2E-12 1.6E-16 130.3 19.1 210 42-265 239-485 (494)
166 PRK10820 DNA-binding transcrip 99.4 5.7E-12 1.2E-16 131.0 17.5 213 40-256 199-447 (520)
167 PRK11034 clpA ATP-dependent Cl 99.4 4.8E-12 1E-16 135.5 17.2 187 46-241 459-710 (758)
168 PRK11388 DNA-binding transcrip 99.4 5.7E-12 1.2E-16 134.9 17.5 212 42-260 322-568 (638)
169 KOG1514|consensus 99.4 5.3E-11 1.1E-15 121.5 22.4 217 47-265 398-657 (767)
170 CHL00095 clpC Clp protease ATP 99.4 1.3E-11 2.7E-16 135.2 19.1 191 45-241 509-776 (821)
171 CHL00206 ycf2 Ycf2; Provisiona 99.4 6.8E-12 1.5E-16 140.1 15.7 128 133-264 1732-1878(2281)
172 TIGR02639 ClpA ATP-dependent C 99.4 1.8E-11 3.8E-16 132.6 18.7 180 46-242 455-707 (731)
173 KOG0728|consensus 99.4 1.7E-11 3.7E-16 110.4 15.3 212 36-262 138-387 (404)
174 PRK10865 protein disaggregatio 99.4 2.4E-11 5.3E-16 132.8 19.8 194 44-243 567-825 (857)
175 KOG0652|consensus 99.4 1.1E-11 2.3E-16 112.3 14.0 200 43-258 169-407 (424)
176 TIGR03346 chaperone_ClpB ATP-d 99.4 2.3E-11 5E-16 133.5 19.6 194 45-244 565-823 (852)
177 COG3604 FhlA Transcriptional r 99.4 1.4E-11 3.1E-16 121.3 16.0 209 43-256 221-465 (550)
178 COG0466 Lon ATP-dependent Lon 99.4 3.9E-12 8.5E-17 130.1 11.9 229 30-263 299-584 (782)
179 PF00004 AAA: ATPase family as 99.4 4.9E-12 1.1E-16 107.1 10.4 112 69-193 1-130 (132)
180 KOG0726|consensus 99.4 4E-12 8.6E-17 116.8 10.3 206 36-261 176-424 (440)
181 CHL00081 chlI Mg-protoporyphyr 99.4 4E-11 8.7E-16 116.9 18.0 226 37-263 8-322 (350)
182 KOG2004|consensus 99.4 3.9E-12 8.5E-17 129.5 11.1 184 46-244 412-643 (906)
183 PRK05022 anaerobic nitric oxid 99.3 4.2E-11 9.1E-16 124.5 18.9 211 43-256 185-436 (509)
184 KOG2227|consensus 99.3 1.2E-10 2.7E-15 113.8 20.1 208 36-246 144-379 (529)
185 PRK13531 regulatory ATPase Rav 99.3 5.9E-11 1.3E-15 119.1 18.0 211 45-263 20-283 (498)
186 KOG0742|consensus 99.3 4.9E-11 1.1E-15 114.4 15.2 152 44-211 354-530 (630)
187 TIGR02030 BchI-ChlI magnesium 99.3 1.1E-10 2.4E-15 114.0 18.1 216 44-263 3-309 (337)
188 KOG0729|consensus 99.3 3.7E-11 8E-16 109.2 13.4 204 42-261 174-416 (435)
189 PRK14700 recombination factor 99.3 8.3E-11 1.8E-15 110.5 16.1 138 167-304 8-169 (300)
190 PF06144 DNA_pol3_delta: DNA p 99.3 6.5E-12 1.4E-16 111.8 8.2 163 69-244 1-172 (172)
191 PF01637 Arch_ATPase: Archaeal 99.3 4.7E-11 1E-15 111.2 13.7 187 47-236 1-232 (234)
192 KOG0740|consensus 99.3 3.4E-11 7.3E-16 118.7 12.8 180 37-230 145-354 (428)
193 COG0542 clpA ATP-binding subun 99.3 5.6E-11 1.2E-15 125.0 15.0 190 46-241 492-749 (786)
194 KOG2680|consensus 99.3 1.2E-10 2.6E-15 107.6 15.2 121 139-260 290-426 (454)
195 KOG0736|consensus 99.3 5.3E-11 1.2E-15 122.2 13.9 168 43-230 670-877 (953)
196 PRK15429 formate hydrogenlyase 99.3 1.9E-10 4.1E-15 124.1 19.1 209 42-253 373-616 (686)
197 PRK05342 clpX ATP-dependent pr 99.3 5.4E-11 1.2E-15 119.2 13.6 187 46-242 72-374 (412)
198 COG0465 HflB ATP-dependent Zn 99.3 9.3E-11 2E-15 120.3 15.0 203 40-261 145-388 (596)
199 cd00009 AAA The AAA+ (ATPases 99.2 1.3E-10 2.9E-15 99.5 13.6 141 48-194 1-150 (151)
200 PRK08485 DNA polymerase III su 99.2 7.8E-11 1.7E-15 104.0 11.7 128 105-245 34-174 (206)
201 TIGR02915 PEP_resp_reg putativ 99.2 2.9E-10 6.2E-15 116.9 17.4 212 43-257 137-383 (445)
202 COG2607 Predicted ATPase (AAA+ 99.2 4.9E-10 1.1E-14 100.8 16.1 192 36-244 51-279 (287)
203 KOG0735|consensus 99.2 2.3E-10 5E-15 116.7 15.7 177 42-233 664-871 (952)
204 PRK10923 glnG nitrogen regulat 99.2 4.8E-10 1E-14 116.0 18.3 213 43-258 136-383 (469)
205 TIGR02442 Cob-chelat-sub cobal 99.2 6.6E-10 1.4E-14 118.2 19.0 214 44-261 3-302 (633)
206 PRK15115 response regulator Gl 99.2 1.8E-09 3.9E-14 111.0 20.0 212 46-260 135-381 (444)
207 KOG0744|consensus 99.2 6.5E-10 1.4E-14 103.9 14.5 156 44-210 141-341 (423)
208 TIGR01818 ntrC nitrogen regula 99.2 1.2E-09 2.6E-14 112.9 18.0 213 45-260 134-381 (463)
209 TIGR00382 clpX endopeptidase C 99.1 1.1E-09 2.3E-14 109.4 16.2 188 46-243 78-381 (413)
210 TIGR00390 hslU ATP-dependent p 99.1 1.2E-09 2.5E-14 107.7 15.5 108 137-244 247-402 (441)
211 KOG0732|consensus 99.1 1.1E-09 2.3E-14 117.7 16.3 192 41-241 261-483 (1080)
212 TIGR00764 lon_rel lon-related 99.1 2.3E-09 5E-14 113.0 17.5 127 136-262 216-390 (608)
213 PRK11361 acetoacetate metaboli 99.1 3.5E-09 7.5E-14 109.3 18.5 212 44-258 142-388 (457)
214 PF05621 TniB: Bacterial TniB 99.1 3.5E-09 7.5E-14 100.1 16.1 217 47-263 36-289 (302)
215 KOG0735|consensus 99.1 1.6E-08 3.4E-13 103.6 21.5 269 66-344 431-760 (952)
216 PRK05201 hslU ATP-dependent pr 99.1 2.3E-09 5E-14 105.8 14.3 108 137-244 249-404 (443)
217 COG3283 TyrR Transcriptional r 99.1 4.6E-09 1E-13 99.5 15.6 207 42-257 201-443 (511)
218 PRK13765 ATP-dependent proteas 99.0 5.1E-09 1.1E-13 110.1 16.8 126 136-261 225-398 (637)
219 TIGR01650 PD_CobS cobaltochela 99.0 2.7E-09 5.8E-14 102.6 13.2 165 38-209 38-233 (327)
220 KOG0651|consensus 99.0 1.9E-09 4.1E-14 100.4 10.3 174 43-230 130-339 (388)
221 PRK10365 transcriptional regul 99.0 1.5E-08 3.3E-13 104.0 17.8 211 46-259 140-385 (441)
222 COG0714 MoxR-like ATPases [Gen 99.0 9.5E-09 2.1E-13 101.2 15.0 152 45-203 24-196 (329)
223 PF00158 Sigma54_activat: Sigm 99.0 4.5E-09 9.7E-14 92.7 11.3 124 47-176 1-143 (168)
224 PF07728 AAA_5: AAA domain (dy 99.0 3.2E-10 7E-15 97.1 3.5 116 68-188 1-139 (139)
225 COG0542 clpA ATP-binding subun 99.0 7.9E-09 1.7E-13 109.1 13.6 201 35-246 160-393 (786)
226 smart00350 MCM minichromosome 98.9 5.3E-08 1.2E-12 101.2 19.4 207 46-261 204-502 (509)
227 TIGR02031 BchD-ChlD magnesium 98.9 3.7E-08 7.9E-13 103.8 18.0 192 65-261 15-256 (589)
228 TIGR00368 Mg chelatase-related 98.9 3.8E-08 8.2E-13 101.2 17.2 217 42-261 189-497 (499)
229 COG3267 ExeA Type II secretory 98.9 9.3E-08 2E-12 87.4 16.9 201 50-257 36-267 (269)
230 PHA02244 ATPase-like protein 98.9 2.6E-08 5.7E-13 96.9 14.0 129 55-198 110-263 (383)
231 PF01078 Mg_chelatase: Magnesi 98.9 7.3E-09 1.6E-13 93.0 9.1 117 43-164 1-133 (206)
232 COG3284 AcoR Transcriptional a 98.9 2.8E-08 6.1E-13 101.4 13.3 186 68-257 338-551 (606)
233 PF07724 AAA_2: AAA domain (Cd 98.9 1.3E-08 2.8E-13 90.1 9.3 102 68-176 5-129 (171)
234 PRK11331 5-methylcytosine-spec 98.8 3.3E-08 7.2E-13 98.8 13.0 154 44-206 174-369 (459)
235 PF14532 Sigma54_activ_2: Sigm 98.8 7.5E-09 1.6E-13 88.5 6.8 106 48-176 1-109 (138)
236 PF13173 AAA_14: AAA domain 98.8 8E-08 1.7E-12 81.0 11.5 120 68-201 4-127 (128)
237 PF00931 NB-ARC: NB-ARC domain 98.7 1.9E-07 4.1E-12 90.1 14.6 185 50-239 1-203 (287)
238 KOG2170|consensus 98.7 2.4E-07 5.3E-12 86.3 14.0 123 47-177 84-225 (344)
239 smart00763 AAA_PrkA PrkA AAA d 98.7 7.1E-07 1.5E-11 87.0 16.5 91 136-226 235-347 (361)
240 PTZ00111 DNA replication licen 98.7 4.7E-07 1E-11 97.3 15.5 136 46-189 451-635 (915)
241 KOG0741|consensus 98.6 3.6E-08 7.7E-13 97.9 5.7 152 69-229 259-437 (744)
242 PRK12377 putative replication 98.6 1.4E-07 3.1E-12 88.3 9.5 125 37-176 66-205 (248)
243 COG1239 ChlI Mg-chelatase subu 98.6 2.4E-06 5.2E-11 83.8 18.2 214 44-262 16-321 (423)
244 PRK09862 putative ATP-dependen 98.6 1.7E-06 3.6E-11 88.8 17.1 216 42-263 188-492 (506)
245 PF07726 AAA_3: ATPase family 98.6 1.5E-08 3.2E-13 83.5 1.5 84 68-164 1-89 (131)
246 COG1219 ClpX ATP-dependent pro 98.6 6.2E-07 1.3E-11 84.2 11.6 86 68-163 99-202 (408)
247 smart00382 AAA ATPases associa 98.5 1.8E-06 4E-11 72.9 12.7 99 67-176 3-125 (148)
248 PRK08181 transposase; Validate 98.5 5.4E-07 1.2E-11 85.5 9.8 109 56-176 98-208 (269)
249 PRK08116 hypothetical protein; 98.5 6E-07 1.3E-11 85.5 10.1 147 37-198 77-251 (268)
250 PRK13406 bchD magnesium chelat 98.5 5.4E-06 1.2E-10 86.9 17.6 190 65-261 24-248 (584)
251 COG4650 RtcR Sigma54-dependent 98.5 2.3E-06 4.9E-11 79.5 13.0 193 68-261 210-441 (531)
252 PF05729 NACHT: NACHT domain 98.5 1.1E-06 2.3E-11 77.2 10.4 142 69-210 3-164 (166)
253 KOG1051|consensus 98.5 1E-06 2.2E-11 94.6 11.4 117 46-177 563-711 (898)
254 PRK07952 DNA replication prote 98.5 9.7E-07 2.1E-11 82.5 9.7 133 36-176 63-204 (244)
255 COG0606 Predicted ATPase with 98.4 3.5E-07 7.6E-12 90.8 6.9 121 41-164 175-310 (490)
256 PF13401 AAA_22: AAA domain; P 98.4 4.2E-07 9E-12 76.7 6.5 107 68-176 6-125 (131)
257 KOG0745|consensus 98.4 2E-06 4.4E-11 83.8 11.8 169 68-246 228-508 (564)
258 PRK06526 transposase; Provisio 98.4 3.5E-07 7.6E-12 86.2 6.1 122 67-198 99-236 (254)
259 PF14516 AAA_35: AAA-like doma 98.4 0.00013 2.9E-09 71.7 24.2 197 48-257 14-254 (331)
260 COG1220 HslU ATP-dependent pro 98.4 1.4E-05 3E-10 75.9 15.9 107 138-244 251-405 (444)
261 PRK04841 transcriptional regul 98.4 1.7E-05 3.7E-10 88.9 19.8 188 41-238 10-225 (903)
262 PRK04132 replication factor C 98.4 2.4E-07 5.3E-12 99.9 3.8 51 32-82 6-56 (846)
263 COG1618 Predicted nucleotide k 98.3 9.2E-06 2E-10 69.2 12.2 124 69-205 8-171 (179)
264 PF12775 AAA_7: P-loop contain 98.3 1.4E-06 3E-11 83.1 7.6 148 57-211 26-195 (272)
265 PRK06835 DNA replication prote 98.3 3.2E-06 6.9E-11 82.6 10.2 112 52-176 167-288 (329)
266 KOG0736|consensus 98.3 5.7E-06 1.2E-10 86.0 11.9 169 47-230 403-596 (953)
267 PF13191 AAA_16: AAA ATPase do 98.3 8.3E-07 1.8E-11 79.5 4.7 48 46-93 1-51 (185)
268 PF12774 AAA_6: Hydrolytic ATP 98.3 2.4E-05 5.2E-10 72.6 14.2 137 55-215 23-183 (231)
269 PRK06921 hypothetical protein; 98.2 1E-05 2.3E-10 76.9 11.4 99 66-176 117-224 (266)
270 PRK08939 primosomal protein Dn 98.2 4.6E-06 1E-10 80.8 8.8 57 39-95 121-185 (306)
271 PF01695 IstB_IS21: IstB-like 98.2 2.6E-06 5.7E-11 76.0 5.8 93 67-176 48-149 (178)
272 KOG0482|consensus 98.2 0.0001 2.2E-09 73.5 16.9 221 33-261 330-636 (721)
273 PHA00729 NTP-binding motif con 98.1 1.2E-05 2.6E-10 73.6 9.0 126 57-207 8-138 (226)
274 COG1484 DnaC DNA replication p 98.1 1.2E-05 2.7E-10 75.8 8.9 102 65-177 104-209 (254)
275 PF13604 AAA_30: AAA domain; P 98.1 2.6E-05 5.7E-10 70.8 10.3 119 52-176 5-130 (196)
276 PLN03210 Resistant to P. syrin 98.1 0.00013 2.8E-09 83.6 18.2 187 42-234 181-391 (1153)
277 PF10443 RNA12: RNA12 protein; 98.0 0.00015 3.3E-09 71.9 15.4 132 137-273 148-309 (431)
278 TIGR02688 conserved hypothetic 98.0 0.00019 4.1E-09 71.3 16.1 95 58-176 203-312 (449)
279 PRK09183 transposase/IS protei 98.0 2.1E-05 4.6E-10 74.6 8.6 96 67-176 103-205 (259)
280 KOG2543|consensus 98.0 0.0044 9.6E-08 60.3 23.2 199 45-255 6-247 (438)
281 PHA02774 E1; Provisional 98.0 7.9E-05 1.7E-09 76.6 11.9 137 52-214 419-586 (613)
282 COG5271 MDN1 AAA ATPase contai 98.0 9.5E-05 2.1E-09 82.5 13.0 156 68-237 890-1071(4600)
283 PF07693 KAP_NTPase: KAP famil 97.9 0.00092 2E-08 65.6 18.9 55 52-106 3-61 (325)
284 PF03266 NTPase_1: NTPase; In 97.9 2.2E-05 4.8E-10 69.2 6.5 65 137-203 95-165 (168)
285 COG1241 MCM2 Predicted ATPase 97.9 5.2E-05 1.1E-09 79.9 10.2 136 46-191 287-463 (682)
286 COG1373 Predicted ATPase (AAA+ 97.9 0.001 2.2E-08 67.1 19.1 204 52-274 24-260 (398)
287 KOG0741|consensus 97.9 0.00036 7.8E-09 70.1 14.6 153 68-243 540-720 (744)
288 KOG0478|consensus 97.9 0.00026 5.7E-09 73.1 13.9 140 46-199 430-616 (804)
289 PHA02624 large T antigen; Prov 97.9 7.5E-05 1.6E-09 77.1 9.8 116 55-195 419-561 (647)
290 PF00910 RNA_helicase: RNA hel 97.9 3.8E-05 8.3E-10 62.4 6.3 72 69-163 1-79 (107)
291 PF00493 MCM: MCM2/3/5 family 97.8 1.5E-05 3.2E-10 78.5 3.5 134 35-190 18-200 (331)
292 COG2909 MalT ATP-dependent tra 97.8 0.00073 1.6E-08 71.8 16.0 181 41-232 15-227 (894)
293 PRK04296 thymidine kinase; Pro 97.8 0.00013 2.8E-09 65.9 8.9 24 69-92 5-28 (190)
294 PF10236 DAP3: Mitochondrial r 97.7 0.0014 3.1E-08 63.7 15.6 48 190-237 258-308 (309)
295 PRK10536 hypothetical protein; 97.7 0.00045 9.7E-09 64.5 11.4 125 44-176 54-212 (262)
296 PF06309 Torsin: Torsin; Inte 97.7 0.00011 2.3E-09 60.7 6.3 55 46-100 26-87 (127)
297 PRK12723 flagellar biosynthesi 97.7 0.00034 7.4E-09 69.8 11.1 138 69-210 177-336 (388)
298 PF12169 DNA_pol3_gamma3: DNA 97.6 0.00056 1.2E-08 58.6 10.7 123 251-451 1-130 (143)
299 KOG0480|consensus 97.6 0.0015 3.2E-08 67.2 14.8 109 45-164 345-469 (764)
300 COG1419 FlhF Flagellar GTP-bin 97.6 0.0006 1.3E-08 67.2 11.8 128 69-200 206-352 (407)
301 COG5271 MDN1 AAA ATPase contai 97.6 0.00092 2E-08 75.1 13.9 139 55-208 1534-1702(4600)
302 KOG3347|consensus 97.6 7.7E-05 1.7E-09 62.7 4.6 25 66-90 7-31 (176)
303 PF00448 SRP54: SRP54-type pro 97.6 0.00022 4.9E-09 64.6 7.7 128 69-200 4-154 (196)
304 PTZ00202 tuzin; Provisional 97.5 0.003 6.5E-08 63.1 14.7 52 40-91 257-311 (550)
305 COG3899 Predicted ATPase [Gene 97.5 0.017 3.8E-07 63.9 22.2 104 139-244 156-266 (849)
306 KOG0477|consensus 97.5 0.00056 1.2E-08 69.9 9.5 149 46-205 450-645 (854)
307 PF03969 AFG1_ATPase: AFG1-lik 97.5 0.0002 4.2E-09 71.0 6.0 114 67-196 63-201 (362)
308 PF09848 DUF2075: Uncharacteri 97.5 0.00024 5.3E-09 70.7 6.8 92 69-163 4-117 (352)
309 KOG2228|consensus 97.4 0.0014 3.1E-08 62.6 11.2 164 46-209 25-219 (408)
310 TIGR01618 phage_P_loop phage n 97.4 0.00032 6.9E-09 64.4 6.8 20 69-88 15-34 (220)
311 PRK11889 flhF flagellar biosyn 97.4 0.00096 2.1E-08 66.0 10.1 139 68-210 243-401 (436)
312 cd01120 RecA-like_NTPases RecA 97.4 0.0011 2.3E-08 57.6 9.4 24 69-92 2-25 (165)
313 PRK14956 DNA polymerase III su 97.4 0.002 4.3E-08 65.7 12.4 130 320-450 203-368 (484)
314 PF04851 ResIII: Type III rest 97.4 0.0016 3.4E-08 57.8 10.6 44 49-92 7-51 (184)
315 COG2842 Uncharacterized ATPase 97.3 0.0032 6.9E-08 59.4 12.2 182 43-246 70-279 (297)
316 COG4088 Predicted nucleotide k 97.3 0.00092 2E-08 59.5 7.9 30 67-96 2-31 (261)
317 PRK15455 PrkA family serine pr 97.3 0.00036 7.7E-09 71.9 5.7 50 42-91 73-128 (644)
318 PRK14963 DNA polymerase III su 97.2 0.00093 2E-08 69.3 8.2 115 320-437 198-328 (504)
319 PF05970 PIF1: PIF1-like helic 97.2 0.0017 3.7E-08 64.8 9.8 43 50-92 6-48 (364)
320 PRK14962 DNA polymerase III su 97.2 0.0039 8.5E-08 64.2 12.6 119 320-439 199-321 (472)
321 PRK14974 cell division protein 97.2 0.0041 8.8E-08 61.0 12.0 25 69-93 143-167 (336)
322 PF04665 Pox_A32: Poxvirus A32 97.2 0.01 2.2E-07 55.2 13.6 134 68-206 15-167 (241)
323 PF12780 AAA_8: P-loop contain 97.2 0.011 2.3E-07 56.3 14.1 151 47-211 10-212 (268)
324 TIGR01447 recD exodeoxyribonuc 97.2 0.0037 8.1E-08 66.1 12.1 37 137-176 259-295 (586)
325 PRK05703 flhF flagellar biosyn 97.2 0.002 4.3E-08 65.5 9.8 104 69-176 224-342 (424)
326 TIGR02858 spore_III_AA stage I 97.2 0.002 4.3E-08 61.3 9.0 34 59-92 104-137 (270)
327 TIGR02237 recomb_radB DNA repa 97.2 0.0035 7.5E-08 57.4 10.5 53 60-115 4-58 (209)
328 cd00561 CobA_CobO_BtuR ATP:cor 97.2 0.0027 5.9E-08 55.1 9.0 41 137-177 95-138 (159)
329 TIGR01448 recD_rel helicase, p 97.2 0.0038 8.2E-08 67.8 12.1 120 50-176 325-452 (720)
330 cd00046 DEXDc DEAD-like helica 97.1 0.0017 3.8E-08 54.3 7.7 25 68-92 2-26 (144)
331 PF00519 PPV_E1_C: Papillomavi 97.1 0.0013 2.7E-08 64.4 6.9 115 54-195 249-382 (432)
332 cd01121 Sms Sms (bacterial rad 97.1 0.0041 9E-08 62.0 10.8 49 55-105 69-119 (372)
333 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.0096 2.1E-07 53.1 12.3 23 69-91 2-24 (183)
334 COG2884 FtsE Predicted ATPase 97.1 0.0072 1.6E-07 53.4 10.8 54 138-192 156-211 (223)
335 PF02562 PhoH: PhoH-like prote 97.1 0.0012 2.7E-08 59.8 6.3 36 138-176 120-155 (205)
336 PF05272 VirE: Virulence-assoc 97.1 0.0081 1.8E-07 54.4 11.5 99 69-195 55-169 (198)
337 PRK13695 putative NTPase; Prov 97.0 0.0099 2.1E-07 52.7 11.8 69 138-209 97-172 (174)
338 PRK14722 flhF flagellar biosyn 97.0 0.004 8.7E-08 61.8 9.9 22 69-90 140-161 (374)
339 PRK10875 recD exonuclease V su 97.0 0.0032 7E-08 66.7 9.8 105 69-176 170-301 (615)
340 cd01124 KaiC KaiC is a circadi 97.0 0.005 1.1E-07 55.0 9.8 23 69-91 2-24 (187)
341 TIGR00708 cobA cob(I)alamin ad 97.0 0.0057 1.2E-07 53.8 9.7 41 137-177 97-140 (173)
342 TIGR02768 TraA_Ti Ti-type conj 97.0 0.0016 3.5E-08 70.9 7.5 114 51-175 355-475 (744)
343 PRK00771 signal recognition pa 97.0 0.0066 1.4E-07 61.7 11.3 27 69-95 98-124 (437)
344 PRK06067 flagellar accessory p 97.0 0.0092 2E-07 55.7 11.5 35 56-90 13-49 (234)
345 PRK13889 conjugal transfer rel 97.0 0.0023 4.9E-08 71.1 8.3 115 51-176 349-470 (988)
346 PF13207 AAA_17: AAA domain; P 97.0 0.00067 1.4E-08 56.1 3.3 23 69-91 2-24 (121)
347 PRK05986 cob(I)alamin adenolsy 96.9 0.0069 1.5E-07 54.1 9.7 41 137-177 115-158 (191)
348 KOG0481|consensus 96.9 0.033 7.3E-07 56.2 15.3 109 46-163 332-454 (729)
349 PRK11823 DNA repair protein Ra 96.9 0.007 1.5E-07 62.0 11.1 51 54-106 66-118 (446)
350 TIGR03878 thermo_KaiC_2 KaiC d 96.9 0.0041 8.8E-08 59.0 8.5 42 62-105 30-73 (259)
351 PRK07003 DNA polymerase III su 96.9 0.003 6.5E-08 67.3 8.0 131 320-451 201-358 (830)
352 PF05707 Zot: Zonular occluden 96.9 0.00074 1.6E-08 61.1 3.0 56 139-194 81-144 (193)
353 TIGR03574 selen_PSTK L-seryl-t 96.8 0.0074 1.6E-07 56.9 9.8 24 69-92 2-25 (249)
354 PRK12726 flagellar biosynthesi 96.8 0.006 1.3E-07 60.2 9.2 24 69-92 209-232 (407)
355 COG3854 SpoIIIAA ncharacterize 96.8 0.022 4.8E-07 51.8 12.0 37 57-93 128-164 (308)
356 PF10923 DUF2791: P-loop Domai 96.8 0.027 5.8E-07 56.6 13.9 90 139-228 241-371 (416)
357 TIGR02012 tigrfam_recA protein 96.8 0.013 2.8E-07 57.1 11.2 36 56-91 42-80 (321)
358 PF13479 AAA_24: AAA domain 96.8 0.0013 2.9E-08 60.4 4.3 19 68-86 5-23 (213)
359 cd01394 radB RadB. The archaea 96.8 0.019 4.1E-07 52.9 11.9 49 56-106 7-57 (218)
360 PRK12724 flagellar biosynthesi 96.8 0.0073 1.6E-07 60.5 9.5 22 69-90 226-247 (432)
361 cd02021 GntK Gluconate kinase 96.7 0.005 1.1E-07 53.1 7.3 22 69-90 2-23 (150)
362 PRK08533 flagellar accessory p 96.7 0.012 2.5E-07 54.8 10.1 22 69-90 27-48 (230)
363 PRK08118 topology modulation p 96.7 0.004 8.7E-08 54.9 6.6 26 68-93 3-28 (167)
364 PRK12727 flagellar biosynthesi 96.7 0.013 2.8E-07 60.4 10.9 23 69-91 353-375 (559)
365 cd00983 recA RecA is a bacter 96.7 0.018 3.9E-07 56.1 11.4 36 56-91 42-80 (325)
366 PRK09435 membrane ATPase/prote 96.7 0.075 1.6E-06 52.1 15.8 39 69-107 59-97 (332)
367 PRK06731 flhF flagellar biosyn 96.7 0.012 2.7E-07 55.8 10.0 26 67-92 76-101 (270)
368 KOG1051|consensus 96.7 0.02 4.4E-07 62.3 12.5 171 44-223 185-381 (898)
369 cd03115 SRP The signal recogni 96.7 0.016 3.5E-07 51.2 10.1 35 69-105 3-37 (173)
370 cd00267 ABC_ATPase ABC (ATP-bi 96.7 0.017 3.8E-07 50.1 10.1 24 68-91 27-50 (157)
371 TIGR01613 primase_Cterm phage/ 96.7 0.039 8.4E-07 53.7 13.6 149 23-195 31-203 (304)
372 TIGR00416 sms DNA repair prote 96.6 0.019 4.2E-07 58.9 11.6 51 54-106 80-132 (454)
373 KOG4658|consensus 96.6 0.022 4.8E-07 63.1 12.8 187 48-242 161-365 (889)
374 PRK14532 adenylate kinase; Pro 96.6 0.036 7.8E-07 49.7 12.3 24 68-91 2-25 (188)
375 PF13245 AAA_19: Part of AAA d 96.6 0.0034 7.3E-08 47.4 4.4 22 69-90 13-34 (76)
376 PRK08691 DNA polymerase III su 96.6 0.0062 1.4E-07 64.6 7.9 131 320-451 201-358 (709)
377 cd01128 rho_factor Transcripti 96.6 0.011 2.4E-07 55.5 8.9 26 68-93 18-43 (249)
378 TIGR03877 thermo_KaiC_1 KaiC d 96.6 0.016 3.4E-07 54.3 9.9 48 56-105 9-58 (237)
379 PRK13826 Dtr system oriT relax 96.6 0.0054 1.2E-07 68.6 7.8 100 68-176 399-505 (1102)
380 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.028 6.1E-07 48.1 10.7 92 69-177 29-127 (144)
381 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.018 3.8E-07 53.7 10.1 60 57-116 8-73 (235)
382 PRK10416 signal recognition pa 96.5 0.022 4.8E-07 55.6 10.9 25 69-93 117-141 (318)
383 PF01443 Viral_helicase1: Vira 96.5 0.0036 7.7E-08 58.2 5.2 21 69-89 1-21 (234)
384 smart00487 DEXDc DEAD-like hel 96.5 0.017 3.7E-07 51.4 9.4 24 67-90 25-49 (201)
385 PRK04328 hypothetical protein; 96.5 0.014 3.1E-07 55.0 9.2 48 56-105 11-60 (249)
386 PRK09354 recA recombinase A; P 96.5 0.029 6.2E-07 55.2 11.4 35 56-90 47-84 (349)
387 cd01393 recA_like RecA is a b 96.5 0.032 7E-07 51.6 11.4 60 56-115 7-72 (226)
388 cd03216 ABC_Carb_Monos_I This 96.5 0.015 3.3E-07 50.9 8.7 23 68-90 28-50 (163)
389 PRK05973 replicative DNA helic 96.5 0.018 3.9E-07 53.6 9.4 23 69-91 67-89 (237)
390 PRK05800 cobU adenosylcobinami 96.4 0.022 4.8E-07 50.3 9.3 24 68-91 3-26 (170)
391 PF08433 KTI12: Chromatin asso 96.4 0.019 4.1E-07 54.7 9.5 73 67-151 2-84 (270)
392 PF13671 AAA_33: AAA domain; P 96.4 0.0023 5.1E-08 54.5 3.0 23 69-91 2-24 (143)
393 COG1066 Sms Predicted ATP-depe 96.4 0.021 4.6E-07 56.3 9.8 50 54-106 79-130 (456)
394 PRK09361 radB DNA repair and r 96.4 0.039 8.4E-07 51.1 11.3 48 56-105 11-60 (225)
395 PF13086 AAA_11: AAA domain; P 96.4 0.0039 8.5E-08 57.6 4.6 38 51-90 4-41 (236)
396 cd01129 PulE-GspE PulE/GspE Th 96.4 0.013 2.8E-07 55.8 8.2 51 41-92 56-106 (264)
397 PRK14527 adenylate kinase; Pro 96.4 0.027 5.9E-07 50.7 10.0 25 68-92 8-32 (191)
398 KOG3928|consensus 96.4 0.14 3E-06 50.6 15.0 98 140-237 318-455 (461)
399 PRK13900 type IV secretion sys 96.4 0.15 3.3E-06 50.1 15.7 36 55-92 151-186 (332)
400 TIGR02782 TrbB_P P-type conjug 96.4 0.018 3.8E-07 55.8 9.0 49 41-91 105-157 (299)
401 PRK06995 flhF flagellar biosyn 96.4 0.031 6.7E-07 57.4 11.1 23 69-91 259-281 (484)
402 PRK07261 topology modulation p 96.4 0.011 2.3E-07 52.4 6.9 25 69-93 3-27 (171)
403 PRK14958 DNA polymerase III su 96.4 0.012 2.5E-07 61.4 8.1 87 320-407 201-294 (509)
404 PRK14528 adenylate kinase; Pro 96.3 0.047 1E-06 49.0 11.1 25 67-91 2-26 (186)
405 PRK14961 DNA polymerase III su 96.3 0.013 2.9E-07 58.4 8.3 86 321-407 202-290 (363)
406 PRK13341 recombination factor 96.3 0.045 9.7E-07 59.4 12.6 128 320-447 198-345 (725)
407 PRK06547 hypothetical protein; 96.3 0.0083 1.8E-07 53.1 6.0 32 61-92 10-41 (172)
408 cd03228 ABCC_MRP_Like The MRP 96.3 0.045 9.8E-07 48.3 10.6 42 137-178 114-156 (171)
409 PRK06696 uridine kinase; Valid 96.3 0.014 3E-07 54.0 7.5 43 50-92 3-48 (223)
410 TIGR00064 ftsY signal recognit 96.3 0.021 4.6E-07 54.5 8.8 27 69-95 75-101 (272)
411 cd03281 ABC_MSH5_euk MutS5 hom 96.2 0.045 9.8E-07 50.3 10.5 21 68-88 31-51 (213)
412 PRK14721 flhF flagellar biosyn 96.2 0.029 6.2E-07 56.7 9.8 22 69-90 194-215 (420)
413 PF13238 AAA_18: AAA domain; P 96.2 0.004 8.8E-08 51.7 3.2 22 69-90 1-22 (129)
414 COG1116 TauB ABC-type nitrate/ 96.2 0.039 8.5E-07 51.0 9.8 22 69-90 32-53 (248)
415 COG2804 PulE Type II secretory 96.2 0.011 2.4E-07 59.9 6.7 55 39-95 232-287 (500)
416 TIGR01425 SRP54_euk signal rec 96.2 0.019 4E-07 58.1 8.2 25 69-93 103-127 (429)
417 PRK09376 rho transcription ter 96.2 0.015 3.3E-07 57.7 7.3 26 68-93 171-196 (416)
418 cd04124 RabL2 RabL2 subfamily. 96.1 0.034 7.4E-07 48.4 8.9 21 69-89 3-23 (161)
419 cd03214 ABC_Iron-Siderophores_ 96.1 0.027 5.8E-07 50.2 8.4 22 69-90 28-49 (180)
420 PRK00091 miaA tRNA delta(2)-is 96.1 0.047 1E-06 53.0 10.4 25 68-92 6-30 (307)
421 COG0529 CysC Adenylylsulfate k 96.1 0.042 9.1E-07 48.0 8.9 28 68-95 25-52 (197)
422 cd02019 NK Nucleoside/nucleoti 96.1 0.0065 1.4E-07 44.9 3.5 22 69-90 2-23 (69)
423 PF00406 ADK: Adenylate kinase 96.1 0.026 5.6E-07 48.7 7.8 20 71-90 1-20 (151)
424 PRK00131 aroK shikimate kinase 96.1 0.0065 1.4E-07 53.5 4.2 25 68-92 6-30 (175)
425 TIGR00150 HI0065_YjeE ATPase, 96.1 0.012 2.7E-07 49.5 5.5 24 69-92 25-48 (133)
426 TIGR03499 FlhF flagellar biosy 96.1 0.012 2.5E-07 56.6 6.1 23 69-91 197-219 (282)
427 PHA02530 pseT polynucleotide k 96.1 0.042 9.1E-07 53.3 10.1 22 69-90 5-26 (300)
428 KOG1808|consensus 96.1 0.006 1.3E-07 70.6 4.6 149 53-210 428-600 (1856)
429 cd00544 CobU Adenosylcobinamid 96.1 0.025 5.5E-07 49.9 7.7 21 69-89 2-22 (169)
430 cd01131 PilT Pilus retraction 96.0 0.035 7.6E-07 50.4 8.7 24 69-92 4-27 (198)
431 PRK13947 shikimate kinase; Pro 96.0 0.0072 1.6E-07 53.3 4.1 26 67-92 2-27 (171)
432 PRK04220 2-phosphoglycerate ki 96.0 0.16 3.4E-06 48.9 13.3 32 61-92 86-118 (301)
433 COG1100 GTPase SAR1 and relate 96.0 0.056 1.2E-06 49.5 10.2 97 69-177 8-121 (219)
434 cd02027 APSK Adenosine 5'-phos 96.0 0.094 2E-06 45.2 10.9 23 69-91 2-24 (149)
435 PRK06762 hypothetical protein; 96.0 0.007 1.5E-07 53.1 3.9 22 69-90 5-26 (166)
436 TIGR00767 rho transcription te 96.0 0.018 3.9E-07 57.3 7.0 25 69-93 171-195 (415)
437 COG4178 ABC-type uncharacteriz 96.0 0.046 1E-06 57.2 10.3 39 139-177 535-574 (604)
438 TIGR00174 miaA tRNA isopenteny 96.0 0.031 6.8E-07 53.5 8.3 24 69-92 2-25 (287)
439 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.0 0.11 2.3E-06 45.3 11.3 22 68-89 4-25 (166)
440 PRK07667 uridine kinase; Provi 95.9 0.015 3.3E-07 52.6 5.9 27 69-95 20-46 (193)
441 PRK03839 putative kinase; Prov 95.9 0.0066 1.4E-07 54.1 3.5 23 69-91 3-25 (180)
442 PRK14952 DNA polymerase III su 95.9 0.026 5.6E-07 59.6 8.3 130 321-450 201-362 (584)
443 cd03238 ABC_UvrA The excision 95.9 0.04 8.8E-07 48.9 8.4 41 138-178 108-150 (176)
444 cd04106 Rab23_lke Rab23-like s 95.9 0.13 2.9E-06 44.3 11.7 21 69-89 3-23 (162)
445 cd03247 ABCC_cytochrome_bd The 95.9 0.084 1.8E-06 46.9 10.5 43 137-179 116-159 (178)
446 cd03222 ABC_RNaseL_inhibitor T 95.9 0.069 1.5E-06 47.5 9.8 22 69-90 28-49 (177)
447 cd04162 Arl9_Arfrp2_like Arl9/ 95.9 0.042 9.1E-07 48.1 8.4 21 69-89 2-22 (164)
448 TIGR01420 pilT_fam pilus retra 95.9 0.15 3.3E-06 50.5 13.2 25 68-92 124-148 (343)
449 PF13337 Lon_2: Putative ATP-d 95.9 0.067 1.5E-06 53.9 10.6 90 68-177 210-311 (457)
450 PRK06645 DNA polymerase III su 95.9 0.027 5.9E-07 58.4 8.2 132 320-451 210-371 (507)
451 cd03246 ABCC_Protease_Secretio 95.9 0.092 2E-06 46.4 10.7 22 69-90 31-52 (173)
452 PF08298 AAA_PrkA: PrkA AAA do 95.9 0.011 2.3E-07 57.7 4.8 49 44-92 59-114 (358)
453 PRK14723 flhF flagellar biosyn 95.9 0.028 6.1E-07 60.6 8.5 141 69-211 188-348 (767)
454 COG0467 RAD55 RecA-superfamily 95.9 0.018 3.9E-07 54.7 6.4 43 60-104 15-59 (260)
455 PRK10867 signal recognition pa 95.9 0.052 1.1E-06 55.2 10.0 25 69-93 103-127 (433)
456 PF00437 T2SE: Type II/IV secr 95.9 0.011 2.3E-07 56.5 4.8 52 42-93 101-154 (270)
457 PRK14949 DNA polymerase III su 95.9 0.027 5.8E-07 61.4 8.1 88 320-408 201-291 (944)
458 TIGR02788 VirB11 P-type DNA tr 95.9 0.086 1.9E-06 51.4 11.1 24 68-91 146-169 (308)
459 cd04177 RSR1 RSR1 subgroup. R 95.8 0.1 2.2E-06 45.6 10.5 23 68-90 3-25 (168)
460 TIGR01663 PNK-3'Pase polynucle 95.8 0.026 5.6E-07 58.7 7.5 22 69-90 372-393 (526)
461 PRK12608 transcription termina 95.8 0.022 4.8E-07 56.2 6.6 30 64-93 131-160 (380)
462 cd04110 Rab35 Rab35 subfamily. 95.8 0.05 1.1E-06 49.3 8.6 22 68-89 8-29 (199)
463 PRK13808 adenylate kinase; Pro 95.8 0.12 2.6E-06 50.5 11.5 24 68-91 2-25 (333)
464 PF08477 Miro: Miro-like prote 95.8 0.03 6.5E-07 45.8 6.5 23 69-91 2-24 (119)
465 cd03283 ABC_MutS-like MutS-lik 95.8 0.077 1.7E-06 48.2 9.7 23 68-90 27-49 (199)
466 PRK14737 gmk guanylate kinase; 95.7 0.032 7E-07 50.0 7.0 23 68-90 6-28 (186)
467 cd04140 ARHI_like ARHI subfami 95.7 0.11 2.3E-06 45.4 10.3 21 69-89 4-24 (165)
468 PRK14712 conjugal transfer nic 95.7 0.058 1.3E-06 62.7 10.6 123 50-176 837-967 (1623)
469 PRK13709 conjugal transfer nic 95.7 0.06 1.3E-06 63.3 10.8 122 51-176 970-1099(1747)
470 PRK14951 DNA polymerase III su 95.7 0.035 7.5E-07 58.9 8.2 130 320-450 206-363 (618)
471 PRK00625 shikimate kinase; Pro 95.7 0.01 2.3E-07 52.5 3.7 25 68-92 2-26 (173)
472 COG1485 Predicted ATPase [Gene 95.7 0.015 3.2E-07 56.3 4.9 24 69-92 68-91 (367)
473 PRK10463 hydrogenase nickel in 95.7 0.075 1.6E-06 50.8 9.7 38 55-92 93-130 (290)
474 TIGR01360 aden_kin_iso1 adenyl 95.7 0.012 2.6E-07 52.7 4.0 25 67-91 4-28 (188)
475 cd04155 Arl3 Arl3 subfamily. 95.7 0.18 3.9E-06 44.1 11.6 23 67-89 15-37 (173)
476 PLN02674 adenylate kinase 95.7 0.19 4.1E-06 47.0 12.1 25 67-91 32-56 (244)
477 TIGR02236 recomb_radA DNA repa 95.7 0.049 1.1E-06 53.1 8.6 64 55-118 82-151 (310)
478 cd03243 ABC_MutS_homologs The 95.7 0.11 2.3E-06 47.3 10.3 21 68-88 31-51 (202)
479 cd00876 Ras Ras family. The R 95.7 0.07 1.5E-06 45.8 8.8 21 69-89 2-22 (160)
480 COG2274 SunT ABC-type bacterio 95.7 0.042 9.2E-07 59.3 8.7 42 136-177 626-668 (709)
481 PF06431 Polyoma_lg_T_C: Polyo 95.7 0.016 3.5E-07 56.3 4.9 120 51-195 138-285 (417)
482 PRK11174 cysteine/glutathione 95.7 0.06 1.3E-06 57.5 9.9 22 69-90 379-400 (588)
483 PRK12323 DNA polymerase III su 95.6 0.038 8.3E-07 58.3 8.0 131 320-451 206-363 (700)
484 COG1119 ModF ABC-type molybden 95.6 0.12 2.7E-06 47.6 10.3 51 137-187 189-243 (257)
485 PRK14531 adenylate kinase; Pro 95.6 0.011 2.4E-07 52.9 3.6 25 68-92 4-28 (183)
486 TIGR02760 TraI_TIGR conjugativ 95.6 0.085 1.8E-06 63.4 11.8 120 50-175 431-565 (1960)
487 COG1102 Cmk Cytidylate kinase 95.6 0.011 2.3E-07 50.9 3.1 24 69-92 3-26 (179)
488 cd03227 ABC_Class2 ABC-type Cl 95.6 0.14 3.1E-06 44.7 10.5 23 68-90 23-45 (162)
489 COG1125 OpuBA ABC-type proline 95.6 0.09 1.9E-06 48.8 9.3 23 69-91 30-52 (309)
490 TIGR01313 therm_gnt_kin carboh 95.6 0.0094 2E-07 52.2 2.9 23 69-91 1-23 (163)
491 smart00175 RAB Rab subfamily o 95.6 0.088 1.9E-06 45.5 9.1 22 69-90 3-24 (164)
492 cd00464 SK Shikimate kinase (S 95.6 0.012 2.7E-07 50.7 3.7 24 69-92 2-25 (154)
493 PRK13949 shikimate kinase; Pro 95.6 0.015 3.2E-07 51.4 4.2 25 68-92 3-27 (169)
494 KOG0989|consensus 95.6 0.015 3.4E-07 55.0 4.3 92 320-432 211-303 (346)
495 PRK09270 nucleoside triphospha 95.6 0.034 7.5E-07 51.7 6.8 42 52-93 18-60 (229)
496 PLN03071 GTP-binding nuclear p 95.6 0.12 2.5E-06 47.8 10.2 21 69-89 16-36 (219)
497 KOG0922|consensus 95.6 0.12 2.7E-06 53.8 11.1 35 53-89 55-89 (674)
498 cd01878 HflX HflX subfamily. 95.5 0.59 1.3E-05 42.2 14.8 23 67-89 42-64 (204)
499 cd00227 CPT Chloramphenicol (C 95.5 0.015 3.2E-07 51.7 4.0 25 68-92 4-28 (175)
500 PRK14530 adenylate kinase; Pro 95.5 0.013 2.8E-07 54.0 3.8 25 68-92 5-29 (215)
No 1
>KOG0991|consensus
Probab=100.00 E-value=2.1e-53 Score=373.72 Aligned_cols=321 Identities=35% Similarity=0.584 Sum_probs=285.1
Q ss_pred CCCCCCCCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeC
Q psy12150 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (456)
Q Consensus 25 ~~~~~~~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~ 104 (456)
.........||+|||||..++||+|+++.++.+.-..+.|+.||++|.||||+||||.+.++++++.++.+...++|+|+
T Consensus 7 ~~~~~~~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNA 86 (333)
T KOG0991|consen 7 MSKSDKYQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNA 86 (333)
T ss_pred CCccccccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccC
Confidence 33444566789999999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred CCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccc
Q psy12150 105 SDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPL 184 (456)
Q Consensus 105 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l 184 (456)
+++++.+.+++.++.|++..... |...+++||+||+|.|+..+|++|++.||=++..++|+++||...|+++++
T Consensus 87 SdeRGIDvVRn~IK~FAQ~kv~l------p~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEPI 160 (333)
T KOG0991|consen 87 SDERGIDVVRNKIKMFAQKKVTL------PPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEPI 160 (333)
T ss_pred ccccccHHHHHHHHHHHHhhccC------CCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhhhH
Confidence 99999999999999999886543 223788999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCC
Q psy12150 185 TSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP 264 (456)
Q Consensus 185 ~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~~~ 264 (456)
.|||..+.|..++..++...|..+++.|++.++++.++.++..+.||+|+++|.||.... +-+.|+.+.
T Consensus 161 QSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~--g~g~Vn~en--------- 229 (333)
T KOG0991|consen 161 QSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVN--GFGLVNQEN--------- 229 (333)
T ss_pred HhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhc--cccccchhh---------
Confidence 999999999999999999999999999999999999998888888888888887776543 112333333
Q ss_pred HHHHHHHHcccchHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHhhhh
Q psy12150 265 KPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCA 344 (456)
Q Consensus 265 ~~~i~~l~~~~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~~~lq~~~ 344 (456)
T Consensus 230 -------------------------------------------------------------------------------- 229 (333)
T KOG0991|consen 230 -------------------------------------------------------------------------------- 229 (333)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCCCcccccchhcccCCCchHHHHHhh---hCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q psy12150 345 RLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALIL 421 (456)
Q Consensus 345 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~s~~di~~~l~~~~~~~~~~~~~~~~~~~ 421 (456)
|+++++.|.|..+++++. ..++.++++.+..+|+.|||..||+..++++++++ ++++..+.+++
T Consensus 230 ------------VfKv~d~PhP~~v~~ml~~~~~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~~-~~~E~~rlE~i 296 (333)
T KOG0991|consen 230 ------------VFKVCDEPHPLLVKKMLQACLKRNIDEALKILAELWKLGYSPEDIITTLFRVVKNM-DVAESLRLEFI 296 (333)
T ss_pred ------------hhhccCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cHHHHHHHHHH
Confidence 666666666666777664 46889999999999999999999999999999998 79999999999
Q ss_pred HHHHHHHhhhhcCCChhHHHHHHHHHHHHHhccc
Q psy12150 422 EKLAECNARLQDGASEYIQILDLGSIVIKANKTA 455 (456)
Q Consensus 422 ~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~~~~~ 455 (456)
+.++-+++|+++|.++.+|+.+|++.++..-..+
T Consensus 297 keig~thmrI~eGv~s~LQl~glla~l~~~~~k~ 330 (333)
T KOG0991|consen 297 KEIGLTHMRILEGVNSLLQLSGLLAKLCKVGEKA 330 (333)
T ss_pred HHHhhHHhHHHhhHhHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999885443
No 2
>KOG0989|consensus
Probab=100.00 E-value=3.4e-50 Score=368.11 Aligned_cols=322 Identities=47% Similarity=0.696 Sum_probs=293.5
Q ss_pred CCCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcC-CccccceEEeeCCCCc
Q psy12150 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDR 108 (456)
Q Consensus 30 ~~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~-~~~~~~~~e~n~~~~~ 108 (456)
+..+.|.|||||++|++++||+.++..|++.+.+...|+||||||||||||++++++++++++ +..+..+.+.|+++.+
T Consensus 21 p~~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder 100 (346)
T KOG0989|consen 21 PKHRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER 100 (346)
T ss_pred CCccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccc
Confidence 356779999999999999999999999999999988889999999999999999999999998 5567788999999999
Q ss_pred ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccCCc
Q psy12150 109 GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRC 188 (456)
Q Consensus 109 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~r~ 188 (456)
|...+++++..|+..........+.||+.++|+|+||+|.|+.+++.+|++.||+++.+++||++||+..+++.++.|||
T Consensus 101 Gisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 101 GISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred cccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhH
Confidence 99999999999998877766778889999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCC-HHHHHHHhCCCCHHH
Q psy12150 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV-NEDVLEVTGVIPKPW 267 (456)
Q Consensus 189 ~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It-~~~v~~~~~~~~~~~ 267 (456)
+.+.|+++..+.+...|+.+|.+||+++++++++.|+..++||+|+++..||.++. .++.|| .-.+..+.+..+++.
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~--~gk~It~~~~~e~~~GvVp~~~ 258 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSL--LGKRITTSLVNEELAGVVPDEK 258 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhc--cCcccchHHHHHHHhccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999987 567888 555555666888877
Q ss_pred HHHHHcccchHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhhc
Q psy12150 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLK 347 (456)
Q Consensus 268 i~~l~~~~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~~~lq~~~~~~ 347 (456)
+.++++.
T Consensus 259 l~~lle~------------------------------------------------------------------------- 265 (346)
T KOG0989|consen 259 LLDLLEL------------------------------------------------------------------------- 265 (346)
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 7777665
Q ss_pred CCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy12150 348 GGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 427 (456)
Q Consensus 348 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 427 (456)
...+++......+++++..||+..++++||+.+++....+++.++..+-.++++.
T Consensus 266 -------------------------a~S~d~~~~v~~~Rei~~sg~~~~~lmsQLa~vi~~~~g~~d~~k~~~~~kl~~~ 320 (346)
T KOG0989|consen 266 -------------------------ALSADTPNTVKRVREIMRSGYSPLQLMSQLAEVIMDIIGLSDEQKAQISLKLFTR 320 (346)
T ss_pred -------------------------HHccChHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhc
Confidence 0135556666688889999999999999999999987678999999999999999
Q ss_pred HhhhhcCCChhHHHHHHHHHHHHH
Q psy12150 428 NARLQDGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 428 ~~~l~~g~~~~~ql~~l~~~~~~~ 451 (456)
|.|+.+|+++++||..|..+...+
T Consensus 321 ~~~~~dg~~l~~~L~~L~~~~~ql 344 (346)
T KOG0989|consen 321 DKRLEDGEDLELALKDLLEAEKQL 344 (346)
T ss_pred cchhhcchhHHHHHHHHHHHHHHH
Confidence 999999999999999999988765
No 3
>PLN03025 replication factor C subunit; Provisional
Probab=100.00 E-value=3.6e-48 Score=378.82 Aligned_cols=316 Identities=37% Similarity=0.575 Sum_probs=283.4
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHH
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQV 112 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~ 112 (456)
.||++||||++|++++|+++++..|+.++.+++.+|++||||||+|||++++++++++.+..+...++++|+++..+.+.
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~ 80 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDV 80 (319)
T ss_pred CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHH
Confidence 48999999999999999999999999999999999999999999999999999999997765556789999999889888
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccCCceEEE
Q psy12150 113 IRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192 (456)
Q Consensus 113 i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~r~~~i~ 192 (456)
+++.+..+........ .+.+++|||||+|.|+...++.|+++++.++.+++||++||...++.++|++||..++
T Consensus 81 vr~~i~~~~~~~~~~~------~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 81 VRNKIKMFAQKKVTLP------PGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred HHHHHHHHHhccccCC------CCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhccc
Confidence 8888887765432110 1257899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCCHHHHHHHH
Q psy12150 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272 (456)
Q Consensus 193 f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~~~~~~i~~l~ 272 (456)
|.+++.+++..+++.+++++|+.+++++++.|++.++||+|.+++.||.+. .+.+.||.++|.++++...++.++.++
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~--~~~~~i~~~~v~~~~~~~~~~~i~~~i 232 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATH--SGFGFVNQENVFKVCDQPHPLHVKNIV 232 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH--hcCCCCCHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999544 345689999999999999999999988
Q ss_pred cccchHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCc
Q psy12150 273 KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 352 (456)
Q Consensus 273 ~~~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~ 352 (456)
++
T Consensus 233 ~~------------------------------------------------------------------------------ 234 (319)
T PLN03025 233 RN------------------------------------------------------------------------------ 234 (319)
T ss_pred HH------------------------------------------------------------------------------
Confidence 87
Q ss_pred ccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhh
Q psy12150 353 VNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQ 432 (456)
Q Consensus 353 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 432 (456)
+..++++++...+..|+..|+++.+|+..|++++.+. ++++..+.+++..+|++|+||+
T Consensus 235 --------------------~~~~~~~~a~~~l~~ll~~g~~~~~Il~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 293 (319)
T PLN03025 235 --------------------CLKGKFDDACDGLKQLYDLGYSPTDIITTLFRVVKNY-DMPEFLKLEYLREIGFAHMRIC 293 (319)
T ss_pred --------------------HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHH
Confidence 0134566666678888888999999999999999876 7999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHhccc
Q psy12150 433 DGASEYIQILDLGSIVIKANKTA 455 (456)
Q Consensus 433 ~g~~~~~ql~~l~~~~~~~~~~~ 455 (456)
.|+++.+||.++++.|+.+.++|
T Consensus 294 ~g~~~~~~l~a~~~~~~~~~~~~ 316 (319)
T PLN03025 294 DGVGSLLQLSGLLAKLCLVRETA 316 (319)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998776
No 4
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.9e-41 Score=343.08 Aligned_cols=319 Identities=24% Similarity=0.323 Sum_probs=279.1
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCc----------------
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM---------------- 94 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~---------------- 94 (456)
-.+|.++|||.+|++++|++.++..|.++++.++.+| ||||||+|+|||++|+.+++.+.+..
T Consensus 4 ~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~ 83 (451)
T PRK06305 4 YQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKE 83 (451)
T ss_pred hHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHH
Confidence 4689999999999999999999999999999999988 99999999999999999999987631
Q ss_pred ----cccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceE
Q psy12150 95 ----YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRF 170 (456)
Q Consensus 95 ----~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~l 170 (456)
...+++++++....+.+.+++........+.. +++++|||||+|.|+.+.++.|+++++++++.++|
T Consensus 84 i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~---------~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~ 154 (451)
T PRK06305 84 ISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSK---------SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKF 154 (451)
T ss_pred HhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhc---------CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceE
Confidence 12357778776667777777665544433322 37789999999999999999999999999999999
Q ss_pred EEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCC
Q psy12150 171 CLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG 250 (456)
Q Consensus 171 Il~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~ 250 (456)
|++++.+.++.++|++||..++|.+++++++..|+..+++++|+.+++++++.|+..++||+|.+++++++++.|.+ +.
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~-~~ 233 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFP-KS 233 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988754 56
Q ss_pred CCHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12150 251 IVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF----DQFHDIVMLASSLSDKQKALFKALE 323 (456)
Q Consensus 251 It~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~~~~~~~~~~~~~l~~~~~ 323 (456)
|+.++|.++++...++++|+++++ +++++|+.++++|+..|++|..++ +|||+++
T Consensus 234 It~~~V~~l~~~~~~~~vf~L~~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~fR~ll------------------ 295 (451)
T PRK06305 234 LDPDSVAKALGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNIL------------------ 295 (451)
T ss_pred cCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHH------------------
Confidence 999999999999999999999998 899999999999999999998865 7888877
Q ss_pred HHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy12150 324 TLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFH 403 (456)
Q Consensus 324 ~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~ 403 (456)
.++.. . .+.
T Consensus 296 ------------------------------------------------------------~vk~~-------~----~~~ 304 (451)
T PRK06305 296 ------------------------------------------------------------LKQYN-------K----QLS 304 (451)
T ss_pred ------------------------------------------------------------HHhhh-------h----HHH
Confidence 22210 0 122
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHHh
Q psy12150 404 DIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKAN 452 (456)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~~ 452 (456)
+.. ..++...+.+++..++++|++|++|.++++++..++..++.++
T Consensus 305 ~~a---~~~s~~~L~~ii~~l~e~d~~lk~~~~~k~~lE~lll~l~~~~ 350 (451)
T PRK06305 305 SVA---TKYSSEQLLEIIDFLGESAKHIQLTIFEKTFLETVIIHLIRIY 350 (451)
T ss_pred HHH---HhCCHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHh
Confidence 222 2689999999999999999999999999999999999999885
No 5
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=6.4e-41 Score=340.33 Aligned_cols=310 Identities=27% Similarity=0.394 Sum_probs=267.3
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCc-----------------
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM----------------- 94 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~----------------- 94 (456)
.+|.+||||++|++++||++++..|..+++.++++| ||||||+|+|||++++++++.+.+..
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 589999999999999999999999999999999998 89999999999999999999987532
Q ss_pred --cccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEE
Q psy12150 95 --YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172 (456)
Q Consensus 95 --~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl 172 (456)
....++++++.+..+.+.+++.+......+.. ++++|+||||+|.|+.+++++|+++||++++.++||+
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~---------~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL 152 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSM---------ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFIL 152 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCccc---------CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEE
Confidence 23467888887777888888888665433322 3788999999999999999999999999999999999
Q ss_pred EecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCC
Q psy12150 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252 (456)
Q Consensus 173 ~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It 252 (456)
+++++.++.+++++||..++|.+++.+++..|+..+++++|+.++++++..|++.++||+|.+++.|++++.|+ ++.||
T Consensus 153 ~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~-~~~It 231 (535)
T PRK08451 153 ATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYC-KNAIT 231 (535)
T ss_pred EECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999886 56899
Q ss_pred HHHHHHHhCCCCHHHHHHHHcccchHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHH
Q psy12150 253 NEDVLEVTGVIPKPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVETSGGD 332 (456)
Q Consensus 253 ~~~v~~~~~~~~~~~i~~l~~~~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd 332 (456)
.++|.++++...++.+++++++ +
T Consensus 232 ~~~V~~~lg~~~~~~I~~li~a-----------------------------i---------------------------- 254 (535)
T PRK08451 232 ESKVADMLGLLDPSKLEDFFQA-----------------------------I---------------------------- 254 (535)
T ss_pred HHHHHHHhCCCCHHHHHHHHHH-----------------------------H----------------------------
Confidence 9999999999999999999887 0
Q ss_pred HHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc----
Q psy12150 333 MRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS---- 408 (456)
Q Consensus 333 ~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~~~~~---- 408 (456)
..++++.+...++.+ .||+..+++..|..++..
T Consensus 255 -----------------------------------------~~~d~~~a~~~l~~L--~g~~~~~~l~~l~~~l~~~~~~ 291 (535)
T PRK08451 255 -----------------------------------------LNQDKEKLFELLKEL--EDYEAEMVLDEMMLFLKEKFLS 291 (535)
T ss_pred -----------------------------------------HhcCHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHhhc
Confidence 012233333344444 567777777777666652
Q ss_pred -CCCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHHh
Q psy12150 409 -ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKAN 452 (456)
Q Consensus 409 -~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~~ 452 (456)
...++...+.++++.|++++..+..|+++.+|+..++..++.+.
T Consensus 292 ~~~~~~l~~l~r~~riL~~~k~~l~~g~~~~i~l~~~~~~~~~~~ 336 (535)
T PRK08451 292 KDSEFSILLYERFFRILSSAKSLLKEGADDGFVLLLMLFKMKEAL 336 (535)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 12356677889999999999999999999999999999999864
No 6
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.5e-41 Score=347.40 Aligned_cols=330 Identities=18% Similarity=0.286 Sum_probs=288.3
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc----------------
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY---------------- 95 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~---------------- 95 (456)
....+||||.+|++++||+.++..|++++.+++.+| |||+||+|+|||++|+.+++.+++...
T Consensus 4 ~~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~ 83 (620)
T PRK14954 4 QVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGE 83 (620)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCcc
Confidence 346799999999999999999999999999999999 999999999999999999999977320
Q ss_pred -----------ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhc
Q psy12150 96 -----------RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE 164 (456)
Q Consensus 96 -----------~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~ 164 (456)
..++.++++....+.+.+++....+...++++ ++|||||||+|.|+.+.++.|+++|+++
T Consensus 84 C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~---------~~KVvIIdEad~Lt~~a~naLLK~LEeP 154 (620)
T PRK14954 84 CESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKG---------RYRVYIIDEVHMLSTAAFNAFLKTLEEP 154 (620)
T ss_pred CHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcC---------CCEEEEEeChhhcCHHHHHHHHHHHhCC
Confidence 13566777766677888888877776555443 7889999999999999999999999999
Q ss_pred cCcceEEEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy12150 165 TKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244 (456)
Q Consensus 165 ~~~~~lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~ 244 (456)
++.++||++++...++.++|++||..++|.+++.+++..|+..+++++|+.+++++++.|+..++||+|.+++++++++.
T Consensus 155 p~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~ 234 (620)
T PRK14954 155 PPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIA 234 (620)
T ss_pred CCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh----CCCCCCHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHHhcCCH
Q psy12150 245 LK----GGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF----DQFHDIVMLASSLSD 313 (456)
Q Consensus 245 ~~----~~~~It~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~~~~~~~~~ 313 (456)
|. .++.||.++|.++++...++++|+++++ ++..++++++++|+..|++|.+|+ +|||+++
T Consensus 235 y~~~~~~~~~It~~~V~~lv~~~~e~~iF~L~dai~~~d~~~al~~l~~Ll~~ge~p~~iL~lL~~~fRdLL-------- 306 (620)
T PRK14954 235 FSVGSEAEKVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFL-------- 306 (620)
T ss_pred hccccccCCccCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--------
Confidence 97 2678999999999999999999999999 999999999999999999999865 8999988
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCC
Q psy12150 314 KQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAY 393 (456)
Q Consensus 314 ~~~~l~~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 393 (456)
.++.+...|+
T Consensus 307 ----------------------------------------------------------------------~vK~~~~~~l 316 (620)
T PRK14954 307 ----------------------------------------------------------------------VLYNLRSTRL 316 (620)
T ss_pred ----------------------------------------------------------------------HHHhcccccc
Confidence 3333333333
Q ss_pred CH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHHh
Q psy12150 394 SA--TQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKAN 452 (456)
Q Consensus 394 s~--~di~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~~ 452 (456)
.. ..++..+.+... .++...+.+++..+.++|++|++..+..+.+..++..++...
T Consensus 317 ~~~~~~v~~~l~~qA~---~fs~~~L~~~l~~l~e~d~~LKtn~n~~l~lEllLlkl~~~~ 374 (620)
T PRK14954 317 IERPESVKERYQQSAG---GLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIELV 374 (620)
T ss_pred ccCCHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcc
Confidence 22 233444444444 689999999999999999999999999999999999998763
No 7
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.3e-40 Score=342.95 Aligned_cols=263 Identities=25% Similarity=0.377 Sum_probs=240.8
Q ss_pred cchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCc------------------
Q psy12150 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM------------------ 94 (456)
Q Consensus 34 ~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~------------------ 94 (456)
.|.+||||++|++++||+++++.|++++..++.+| |||+||+|+|||++++++++.+++..
T Consensus 2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 81 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAP 81 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhc
Confidence 57799999999999999999999999999999999 89999999999999999999988521
Q ss_pred ---cccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEE
Q psy12150 95 ---YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (456)
Q Consensus 95 ---~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lI 171 (456)
...+++++++....+++.+++........+.. ++++|+||||+|.|+.+.++.|+++||+++.+++||
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~---------~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fI 152 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQ---------SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFI 152 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhc---------CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEE
Confidence 12467889888778889888876665544433 278899999999999999999999999999999999
Q ss_pred EEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy12150 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (456)
Q Consensus 172 l~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~I 251 (456)
++++.+.++.++|+|||..++|.+++.+++.+||..+++++|+.++++++..+++.++||+|.++++|++++.+.+++.|
T Consensus 153 L~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~~~~~I 232 (584)
T PRK14952 153 FATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHV 232 (584)
T ss_pred EEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988767899
Q ss_pred CHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHH----HHHHHHH
Q psy12150 252 VNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF----DQFHDIV 305 (456)
Q Consensus 252 t~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~ 305 (456)
|.++|.++++....+.+|+++++ ++..+++.++++++..|+++.+++ ++||+++
T Consensus 233 t~~~v~~llg~~~~~~i~~lv~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~RdLl 293 (584)
T PRK14952 233 TYQRALGLLGATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLI 293 (584)
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 899999999999999999998755 7888888
No 8
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=100.00 E-value=1.6e-40 Score=326.11 Aligned_cols=313 Identities=41% Similarity=0.685 Sum_probs=272.8
Q ss_pred CCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcCh
Q psy12150 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI 110 (456)
Q Consensus 31 ~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~ 110 (456)
.+.||+++|||.+|++++|++.+++.+..+++.+..++++|+||||+|||++++++++.+.+..+...++++++++..+.
T Consensus 3 ~~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~ 82 (319)
T PRK00440 3 MEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGI 82 (319)
T ss_pred ccCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccch
Confidence 46799999999999999999999999999999998889999999999999999999999987766677888888876666
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccCCceE
Q psy12150 111 QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190 (456)
Q Consensus 111 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~r~~~ 190 (456)
+.+.+.+..+........ .++++|+|||++.+..+.++.|+++++.++..+.+|++++...++.+++.+||..
T Consensus 83 ~~~~~~i~~~~~~~~~~~-------~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 83 DVIRNKIKEFARTAPVGG-------APFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HHHHHHHHHHHhcCCCCC-------CCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 666666666554432210 2567999999999999899999999999988999999999999999999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCCHHHHHH
Q psy12150 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEK 270 (456)
Q Consensus 191 i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~~~~~~i~~ 270 (456)
++|.+++.+++..|++.+++++|+.+++++++.+++.++||+|.++++|++++.+ ++.||.++|.++++...++++|+
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~--~~~it~~~v~~~~~~~~~~~i~~ 233 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAAT--GKEVTEEAVYKITGTARPEEIRE 233 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998875 46899999999999999999999
Q ss_pred HHcccchHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhhcCCC
Q psy12150 271 LLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGE 350 (456)
Q Consensus 271 l~~~~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~ 350 (456)
++++ +
T Consensus 234 l~~~-----------------------------~---------------------------------------------- 238 (319)
T PRK00440 234 MIEL-----------------------------A---------------------------------------------- 238 (319)
T ss_pred HHHH-----------------------------H----------------------------------------------
Confidence 9888 0
Q ss_pred CcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHH-HcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy12150 351 GIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLI-LEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 429 (456)
Q Consensus 351 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~s~~di~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 429 (456)
..+++..+...+..|+ .+|++..+|++.++.++.. ..+++..+.+++..++++|+
T Consensus 239 -----------------------~~~~~~~a~~~l~~ll~~~g~~~~~i~~~l~~~~~~-~~~~~~~l~~~~~~~~~~d~ 294 (319)
T PRK00440 239 -----------------------LNGDFTEAREKLRDLMIDYGLSGEDIIKQIHREVWS-LDIPEELKVELIDAIGEADF 294 (319)
T ss_pred -----------------------HcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 0122333333455543 5799999999999887765 37999999999999999999
Q ss_pred hhhcCCChhHHHHHHHHHHHHH
Q psy12150 430 RLQDGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 430 ~l~~g~~~~~ql~~l~~~~~~~ 451 (456)
++++|.++.+++..+++.++.+
T Consensus 295 ~~k~g~~~~~~le~~i~~~~~~ 316 (319)
T PRK00440 295 RITEGANERIQLEALLAKLALL 316 (319)
T ss_pred HHHCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999876
No 9
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.1e-41 Score=336.32 Aligned_cols=329 Identities=19% Similarity=0.291 Sum_probs=284.7
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc----------------
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY---------------- 95 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~---------------- 95 (456)
..+.++|||.+|++++||+.+++.|++++.+++.+| |+|+||||+|||++|+++++.+.+...
T Consensus 4 ~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~ 83 (397)
T PRK14955 4 QVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGE 83 (397)
T ss_pred HHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCC
Confidence 467899999999999999999999999999999998 999999999999999999999976310
Q ss_pred -----------ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhc
Q psy12150 96 -----------RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE 164 (456)
Q Consensus 96 -----------~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~ 164 (456)
..+++++++....+.+.+++....+...+.++ ++++|||||+|.|+.+.++.|+++++++
T Consensus 84 c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~---------~~kvvIIdea~~l~~~~~~~LLk~LEep 154 (397)
T PRK14955 84 CESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKG---------RYRVYIIDEVHMLSIAAFNAFLKTLEEP 154 (397)
T ss_pred CHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcC---------CeEEEEEeChhhCCHHHHHHHHHHHhcC
Confidence 12566777766667888888776665554443 7889999999999999999999999999
Q ss_pred cCcceEEEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy12150 165 TKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244 (456)
Q Consensus 165 ~~~~~lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~ 244 (456)
++.++||++++...++.+++++||..++|.+++.+++..|+..+++++|+.+++++++.|+..++||+|.++++|+++..
T Consensus 155 ~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~ 234 (397)
T PRK14955 155 PPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIA 234 (397)
T ss_pred CCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hh----CCCCCCHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHHhcCCH
Q psy12150 245 LK----GGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF----DQFHDIVMLASSLSD 313 (456)
Q Consensus 245 ~~----~~~~It~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~~~~~~~~~ 313 (456)
|+ .++.||.++|.++++...++++|+++++ ++..+|+.++++|+..+++|..|+ +|||+++
T Consensus 235 ~~~~~~~~~~It~~~v~~~v~~~~~~~vf~l~~ai~~~~~~~al~~~~~l~~~~~~~~~iL~ll~~~~R~ll-------- 306 (397)
T PRK14955 235 FSVESEGEGSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFL-------- 306 (397)
T ss_pred hccccCCCCccCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH--------
Confidence 86 2568999999999999999999999999 999999999999999999998855 8889988
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCC
Q psy12150 314 KQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAY 393 (456)
Q Consensus 314 ~~~~l~~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 393 (456)
.++.+..+|+
T Consensus 307 ----------------------------------------------------------------------~~k~~~~~~~ 316 (397)
T PRK14955 307 ----------------------------------------------------------------------VVHNLRSTRL 316 (397)
T ss_pred ----------------------------------------------------------------------HHHhcccccc
Confidence 3443333443
Q ss_pred CH-HHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHH
Q psy12150 394 SA-TQLF-DQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 394 s~-~di~-~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~ 451 (456)
.. .+.+ ..+.... ..++...+.++++.+.++|+.|+++.+..+-+..++..++..
T Consensus 317 ~~~~~~~~~~~~~~a---~~~s~~~L~~~l~~l~e~d~~lK~~~~~~l~lE~lll~l~~~ 373 (397)
T PRK14955 317 VERPDAVRERYERDA---AKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKLIEI 373 (397)
T ss_pred ccCCHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhh
Confidence 21 1211 1222222 368999999999999999999999999999999999998876
No 10
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1e-40 Score=348.16 Aligned_cols=330 Identities=20% Similarity=0.369 Sum_probs=283.9
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCc-----------------
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM----------------- 94 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~----------------- 94 (456)
..|++||||.+|++++||+.+++.|.++++.++++| ||||||+|+|||++++.+++.+.+..
T Consensus 5 ~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~ 84 (614)
T PRK14971 5 IVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAF 84 (614)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHH
Confidence 579999999999999999999999999999999999 99999999999999999999987421
Q ss_pred ---cccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEE
Q psy12150 95 ---YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (456)
Q Consensus 95 ---~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lI 171 (456)
...++.++++.+..+.+.+++.+..+...+..+ ++|||||||++.|+.+.++.|+++||+++.+++||
T Consensus 85 ~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~---------~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifI 155 (614)
T PRK14971 85 NEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIG---------KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFI 155 (614)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhCcccC---------CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEE
Confidence 134678888877677888888887765555443 78999999999999999999999999999999999
Q ss_pred EEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy12150 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (456)
Q Consensus 172 l~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~I 251 (456)
++++.+.++.++|++||..++|.+++.+++..|+..++.++|+.+++++++.|+..++||+|.+++++++++.|++++ |
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~~-I 234 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGN-I 234 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987654 9
Q ss_pred CHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12150 252 VNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF----DQFHDIVMLASSLSDKQKALFKALET 324 (456)
Q Consensus 252 t~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~~~~~~~~~~~~~l~~~~~~ 324 (456)
+.++|.+.+....++++|+++++ ++..+++.++++|+..|++|..|+ +|||+++.....
T Consensus 235 t~~~V~~~l~~~~~~~iF~L~dai~~~~~~~al~ll~~Ll~~g~~~~~iL~~L~~~fRdlL~~K~~-------------- 300 (614)
T PRK14971 235 TYKSVIENLNILDYDYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKDA-------------- 300 (614)
T ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcc--------------
Confidence 99999999999999999999999 899999999999999999998866 899999822100
Q ss_pred HHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy12150 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHD 404 (456)
Q Consensus 325 ~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~ 404 (456)
+. .. .-|+ ..+....+.+
T Consensus 301 ----------------~~------------------------------------------~~---ll~v-~~~~~~~~~~ 318 (614)
T PRK14971 301 ----------------AT------------------------------------------LQ---LLEV-GESIRQRYLE 318 (614)
T ss_pred ----------------cc------------------------------------------cc---cccC-CHHHHHHHHH
Confidence 00 00 0000 0111222222
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHH
Q psy12150 405 IVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~ 451 (456)
. ...++...+.++++.+.++|++|+.|.+..+.+..++..++..
T Consensus 319 q---a~~~s~~~L~~~l~~l~e~d~~lK~~~n~~l~lE~lllkL~~~ 362 (614)
T PRK14971 319 Q---AQKCPMSFLYRALKLCNQCDLNYRASKNKRLLVELTLIQLAQL 362 (614)
T ss_pred H---HHhCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhcc
Confidence 2 2368999999999999999999999999999999999998876
No 11
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=6.2e-40 Score=339.81 Aligned_cols=331 Identities=19% Similarity=0.273 Sum_probs=284.2
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc---------------
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY--------------- 95 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~--------------- 95 (456)
-.+|.+||||++|++++||+.+++.|.+++..++.+| +|||||+|+|||++++.+++.+++...
T Consensus 11 y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~ 90 (598)
T PRK09111 11 YRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGE 90 (598)
T ss_pred chhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccH
Confidence 4789999999999999999999999999999999998 999999999999999999999875321
Q ss_pred ---------ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccC
Q psy12150 96 ---------RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETK 166 (456)
Q Consensus 96 ---------~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~ 166 (456)
..+++++++....+++++++.+......+++ +++|||||||+|.|+.+.++.|+++||++++
T Consensus 91 ~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~---------a~~KVvIIDEad~Ls~~a~naLLKtLEePp~ 161 (598)
T PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVS---------ARYKVYIIDEVHMLSTAAFNALLKTLEEPPP 161 (598)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhc---------CCcEEEEEEChHhCCHHHHHHHHHHHHhCCC
Confidence 1256788877778889999887766555443 3788999999999999999999999999999
Q ss_pred cceEEEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q psy12150 167 STRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246 (456)
Q Consensus 167 ~~~lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~ 246 (456)
.++|||+++...++.+.+++||..++|.+++.+++..|+..+++++|+.+++++++.|++.++||+|.++++|++++.+.
T Consensus 162 ~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~g 241 (598)
T PRK09111 162 HVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHG 241 (598)
T ss_pred CeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999988874
Q ss_pred CCCCCCHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHHhcCCHHHHHHH
Q psy12150 247 GGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF----DQFHDIVMLASSLSDKQKALF 319 (456)
Q Consensus 247 ~~~~It~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~~~~~~~~~~~~~l~ 319 (456)
.+.||.++|.++++...++.+|+++++ ++..+++.++++++..|++|..++ ++||.++.+..
T Consensus 242 -~g~It~e~V~~llg~~~~~~if~L~~ai~~gd~~~Al~~l~~l~~~G~~p~~il~~L~~~~r~L~~vK~---------- 310 (598)
T PRK09111 242 -AGEVTAEAVRDMLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLKI---------- 310 (598)
T ss_pred -CCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh----------
Confidence 568999999999999999999999998 999999999999999999999866 56666651110
Q ss_pred HHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHH-HHcCCCHHHH
Q psy12150 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDL-ILEAYSATQL 398 (456)
Q Consensus 320 ~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~g~s~~di 398 (456)
...+ ..-++.....
T Consensus 311 -----------------------------------------------------------------~~~~a~~~~~~p~~~ 325 (598)
T PRK09111 311 -----------------------------------------------------------------VPDAAEDPSLSEAER 325 (598)
T ss_pred -----------------------------------------------------------------ccchhhcccCCHHHH
Confidence 0000 0124443322
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHH
Q psy12150 399 FDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 399 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~ 451 (456)
..+..... .++...+.++++.|.+.++.++++.+..+.+..++..++..
T Consensus 326 -~kl~~~A~---~~s~~~L~r~~q~Ll~~~~~vK~~~n~~lalE~lLlrl~~~ 374 (598)
T PRK09111 326 -TRGAEFAK---KLSMRVLSRLWQMLLKGIEEVQGAPRPLAAAEMVLIRLAYA 374 (598)
T ss_pred -HHHHHHHh---cCCHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhh
Confidence 22333333 67899999999999999999999999999999999998765
No 12
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=5e-40 Score=333.86 Aligned_cols=268 Identities=22% Similarity=0.356 Sum_probs=243.7
Q ss_pred CCCCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCc-------------
Q psy12150 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM------------- 94 (456)
Q Consensus 29 ~~~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~------------- 94 (456)
++.-.||.+||||++|++++||+.+++.|...+..++.++ +||+||+|+|||++|+.+++.+++..
T Consensus 5 ~~~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 5 SNQYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred cccccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 4567899999999999999999999999999999999877 99999999999999999999997631
Q ss_pred ----------cccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhc
Q psy12150 95 ----------YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE 164 (456)
Q Consensus 95 ----------~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~ 164 (456)
...+++++++.+..+.+++++.+......+..+ +++|+||||+|.|+...++.|+++|+++
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~---------~~KVvIIDEa~~Ls~~a~naLLk~LEep 155 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQG---------KHKIFIIDEVHMLSKGAFNALLKTLEEP 155 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccC---------CcEEEEEEChhhcCHHHHHHHHHHHhhc
Confidence 113678888888888999998887765554432 7889999999999999999999999999
Q ss_pred cCcceEEEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy12150 165 TKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244 (456)
Q Consensus 165 ~~~~~lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~ 244 (456)
++.++||++++..+++.+++++||..++|.+++.+++..|++.+++++|+.+++++++.|++.++||+|.++++|++++.
T Consensus 156 p~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~ 235 (507)
T PRK06645 156 PPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAAS 235 (507)
T ss_pred CCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhC--CCCCCHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHH----HHHHHHH
Q psy12150 245 LKG--GEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF----DQFHDIV 305 (456)
Q Consensus 245 ~~~--~~~It~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~ 305 (456)
+++ ++.||.++|.++++...++++|+++++ ++..+|+.++++|+..|++|..++ ++||.+.
T Consensus 236 ~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai~~~d~~~Al~~l~~L~~~g~~~~~~l~~l~~~~~~l~ 305 (507)
T PRK06645 236 MSAKSDNIISPQVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFIAYLN 305 (507)
T ss_pred hhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 763 457999999999999999999999999 999999999999999999999876 6777666
No 13
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.2e-39 Score=325.59 Aligned_cols=332 Identities=20% Similarity=0.317 Sum_probs=278.9
Q ss_pred CCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCC-------ccccceEEe
Q psy12150 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGD-------MYRERILEL 102 (456)
Q Consensus 31 ~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~-------~~~~~~~e~ 102 (456)
+-++|.+||||.+|++++|++..++.+.++++.+..++ |+||||||+|||++++++++.+.+. .....++++
T Consensus 3 ~~~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l 82 (367)
T PRK14970 3 NFVVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL 82 (367)
T ss_pred chHHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe
Confidence 45799999999999999999999999999999998876 9999999999999999999998652 223456677
Q ss_pred eCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccc
Q psy12150 103 NASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQ 182 (456)
Q Consensus 103 n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~ 182 (456)
+.....+.+.+++.+..+...+.+ +++++|||||++.++...++.|++++++++..+++|++++.+.++.+
T Consensus 83 ~~~~~~~~~~i~~l~~~~~~~p~~---------~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 83 DAASNNSVDDIRNLIDQVRIPPQT---------GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred ccccCCCHHHHHHHHHHHhhcccc---------CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 766656667777776665444333 26789999999999999999999999999888999999999999999
Q ss_pred cccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCC
Q psy12150 183 PLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262 (456)
Q Consensus 183 ~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~ 262 (456)
++.+||..++|.+++.+++..|+..+++++|+.+++++++.|+..++||+|.+++++++++.|++.+ ||.++|.++++.
T Consensus 154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~-it~~~v~~~~~~ 232 (367)
T PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKN-ITRQAVTENLNI 232 (367)
T ss_pred HHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999987654 999999999999
Q ss_pred CCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHHH
Q psy12150 263 IPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF----DQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRR 335 (456)
Q Consensus 263 ~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r~ 335 (456)
..++++|+++++ ++..++..++++++..|++|..|+ +|||+++.....
T Consensus 233 ~~~~~if~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~fr~ll~~k~~------------------------- 287 (367)
T PRK14970 233 LDYDTYINVTDLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSKTP------------------------- 287 (367)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcc-------------------------
Confidence 999999999999 899999999999999999999966 788888821100
Q ss_pred HHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHH
Q psy12150 336 AITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDK 415 (456)
Q Consensus 336 ~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~~~~~~~~~~~~ 415 (456)
. .++ .-|.. .+.+..+.+.. ..|+..
T Consensus 288 -------------------~----------------------------~~~---~l~~~-~~~~~~~~~~a---~~~s~~ 313 (367)
T PRK14970 288 -------------------A----------------------------TIA---LLEVG-EQAKKRYEVQS---QKVSQS 313 (367)
T ss_pred -------------------C----------------------------ccc---cccCC-HHHHHHHHHHH---HcCCHH
Confidence 0 000 00111 11122222222 378999
Q ss_pred HHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHH
Q psy12150 416 QKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 416 ~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~ 451 (456)
...+++..+.++|+.++.+.+..+-+.-++..++..
T Consensus 314 ~L~~~l~~l~~~d~~lK~~~~~~l~lE~~l~~l~~~ 349 (367)
T PRK14970 314 FLLSGIDIANDCDLKYKLSKNQRLLVELALMQLASI 349 (367)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhhc
Confidence 999999999999999999999999888888887765
No 14
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.3e-39 Score=347.38 Aligned_cols=334 Identities=21% Similarity=0.314 Sum_probs=279.8
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCc-----------------
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM----------------- 94 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~----------------- 94 (456)
+.|.+||||.+|++|+||+.+++.|++++..++++| |||+||+|+|||++++.+++.+++..
T Consensus 3 ~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~ 82 (824)
T PRK07764 3 LALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALA 82 (824)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHH
Confidence 568899999999999999999999999999999999 99999999999999999999998521
Q ss_pred ----cccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceE
Q psy12150 95 ----YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRF 170 (456)
Q Consensus 95 ----~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~l 170 (456)
...+++++|..+..+++.+++........... +.+||+||||+|.|+...++.|+++||+++.+++|
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~---------~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~f 153 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAE---------SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKF 153 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhc---------CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 12467888887777888888765544332222 37889999999999999999999999999999999
Q ss_pred EEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCC
Q psy12150 171 CLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG 250 (456)
Q Consensus 171 Il~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~ 250 (456)
||++++..++.++|++||..++|.+++.+++..||.++|+++|+.++++++..|++.++||+|.++++|++++.+.+.+.
T Consensus 154 Il~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~~~~~ 233 (824)
T PRK07764 154 IFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPEG 233 (824)
T ss_pred EEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877778
Q ss_pred CCHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHH----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12150 251 IVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ----LFDQFHDIVMLASSLSDKQKALFKALE 323 (456)
Q Consensus 251 It~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~----i~~q~~~l~~~~~~~~~~~~~l~~~~~ 323 (456)
||.++|..+++......+++++++ ++..+++.+++.|+..|+++.. |+++||+|+.+......
T Consensus 234 IT~e~V~allg~~~~~~I~~lidAL~~~D~a~al~~l~~Li~~G~dp~~~L~~LL~~fRDLL~vka~~~~---------- 303 (824)
T PRK07764 234 VTYERAVALLGVTDSALIDEAVDALAAGDGAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVLQAVPDA---------- 303 (824)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcc----------
Confidence 999999999999999999999998 8999999999999999999876 45888888722211100
Q ss_pred HHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy12150 324 TLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFH 403 (456)
Q Consensus 324 ~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~ 403 (456)
... ...+. ..+.+..|.
T Consensus 304 ------------------------------------------------------------~~~--~l~~~-p~d~~~~L~ 320 (824)
T PRK07764 304 ------------------------------------------------------------AER--GLVDA-PADQLDRMR 320 (824)
T ss_pred ------------------------------------------------------------hhh--hhccC-CHHHHHHHH
Confidence 000 00111 134444444
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHH
Q psy12150 404 DIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~ 451 (456)
.... .|+...+.++++.+.++...+....+..+.+..||..++.-
T Consensus 321 ~qA~---~~s~~~L~r~ie~l~ea~~~lrgn~nprL~LElLllrLll~ 365 (824)
T PRK07764 321 AQAQ---RLGPAELTRAADVVNDGLTEMRGATSPRLLLELLCARMLLP 365 (824)
T ss_pred HHHH---hCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhh
Confidence 4444 57888888888888888777777788888888888888754
No 15
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.7e-40 Score=341.88 Aligned_cols=331 Identities=21% Similarity=0.346 Sum_probs=281.1
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc----------------
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY---------------- 95 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~---------------- 95 (456)
..|.+||||++|++++|++++++.|.++++.++++| ||||||+|+|||++++.+++.+++...
T Consensus 4 ~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~ 83 (576)
T PRK14965 4 LVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEIT 83 (576)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHh
Confidence 468899999999999999999999999999999998 999999999999999999999976321
Q ss_pred ---ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEE
Q psy12150 96 ---RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172 (456)
Q Consensus 96 ---~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl 172 (456)
..+++++++....+.+.+++.+......+.. +++||+||||+|.|+.+.++.|+++||+|+++++||+
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~---------~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl 154 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSR---------SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIF 154 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhcccc---------CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEE
Confidence 2357888888778888888877665544333 3788999999999999999999999999999999999
Q ss_pred EecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCC
Q psy12150 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252 (456)
Q Consensus 173 ~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It 252 (456)
++++++++.++|++||..++|.+++.+++..|+..+++++|+.++++++..|++.++||+|.++++|+++..|.+ +.||
T Consensus 155 ~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g-~~It 233 (576)
T PRK14965 155 ATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCG-DAVG 233 (576)
T ss_pred EeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999865 4799
Q ss_pred HHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy12150 253 NEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF----DQFHDIVMLASSLSDKQKALFKALETL 325 (456)
Q Consensus 253 ~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~~~~~~~~~~~~~l~~~~~~~ 325 (456)
.++|.++++....+.+++++++ ++..+++.++++++..|+++..++ ++||++++.....+
T Consensus 234 ~edV~~llG~~~~~~l~~ll~al~~~d~~~al~~l~~l~~~G~~~~~~l~~Ll~~~RdLl~~k~~~~------------- 300 (576)
T PRK14965 234 DDDVAELLGVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGE------------- 300 (576)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCc-------------
Confidence 9999999999999999999998 899999999999999999998755 77787772221100
Q ss_pred HhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy12150 326 VETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDI 405 (456)
Q Consensus 326 ~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~~ 405 (456)
...+. ++.. +-+..+.+.
T Consensus 301 -----------------------------------------------------------~~~~l--~~~~-~~~~~~~~~ 318 (576)
T PRK14965 301 -----------------------------------------------------------PGDLL--DLSE-AELAELRAQ 318 (576)
T ss_pred -----------------------------------------------------------hhhhc--cCCH-HHHHHHHHH
Confidence 00000 1111 112222222
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHH
Q psy12150 406 VMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~ 451 (456)
.. .++...+..++..+.++++.|+.+.+..+-+..++..++..
T Consensus 319 A~---~~s~~~L~~~l~~l~~~~~~lk~~~~~~l~lE~lllkl~~~ 361 (576)
T PRK14965 319 AA---AADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMATL 361 (576)
T ss_pred HH---cCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhc
Confidence 22 68899999999999999999999999999998888888763
No 16
>KOG0990|consensus
Probab=100.00 E-value=1.2e-40 Score=306.90 Aligned_cols=322 Identities=33% Similarity=0.419 Sum_probs=280.1
Q ss_pred CCCCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcC-CccccceEEeeCCCC
Q psy12150 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDD 107 (456)
Q Consensus 29 ~~~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~-~~~~~~~~e~n~~~~ 107 (456)
...++||.++|||.++.++++++++...+.++...++.||.|+|||||+|||+.+.+.++.+.+ ......+.++|+++.
T Consensus 25 ~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~ 104 (360)
T KOG0990|consen 25 PQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDD 104 (360)
T ss_pred cccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCc
Confidence 4567999999999999999999999999999999999999999999999999999999999987 444456889999999
Q ss_pred cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccCC
Q psy12150 108 RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSR 187 (456)
Q Consensus 108 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~r 187 (456)
++.+.+++.+..+........... .+.+++||+||+|.++.++|++|++.++++..+++|++++|++.++.+++++|
T Consensus 105 rgid~vr~qi~~fast~~~~~fst---~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~pa~qsR 181 (360)
T KOG0990|consen 105 RGIDPVRQQIHLFASTQQPTTYST---HAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIHPAQQSR 181 (360)
T ss_pred cCCcchHHHHHHHHhhccceeccc---cCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEeccChhhcCchhhcc
Confidence 999999998888776543211000 12678999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCCHHH
Q psy12150 188 CSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW 267 (456)
Q Consensus 188 ~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~~~~~~ 267 (456)
|..+.|.|++..+....+..+++.+....+++....+++.+.||+|.++|.|+....+.+ .+++
T Consensus 182 ctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~--~~~e-------------- 245 (360)
T KOG0990|consen 182 CTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVM--ERKE-------------- 245 (360)
T ss_pred cccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhC--CCCC--------------
Confidence 999999999999999999999999999999998888888888888888888887766542 1111
Q ss_pred HHHHHcccchHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhhc
Q psy12150 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLK 347 (456)
Q Consensus 268 i~~l~~~~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~~~lq~~~~~~ 347 (456)
T Consensus 246 -------------------------------------------------------------------------------- 245 (360)
T KOG0990|consen 246 -------------------------------------------------------------------------------- 245 (360)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccchhcccCCCchHHHHHhh---hCChHHHHHHHHHH-HHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy12150 348 GGEGIVNEDVLEVTGVIPNPWIEKLLK---VDSFQVLEKYIEDL-ILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 423 (456)
Q Consensus 348 ~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~l-~~~g~s~~di~~~l~~~~~~~~~~~~~~~~~~~~~ 423 (456)
..+.++.+|.|.|.|.+.+|+++++ ++.|.+++..++.+ ..+|++..|++.++++++... +++...+..|+..
T Consensus 246 --~~~~~~~vy~c~g~p~~~dI~~I~~~il~~~~~~~~~~is~lk~~~gla~~d~i~~l~~~~~~~-~~~~~~~~~I~~~ 322 (360)
T KOG0990|consen 246 --LNNPNDLVYQCKGAPQPSDIRQIIEKRMNGEDIELMLDDSELKKPKGLARQDRRAELEQRFAIV-ISKTPVEGHILYQ 322 (360)
T ss_pred --CCCchhhHHHhcCCCChhHHHHHHHHHhcCchHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHH-hcchHHHHHHHHh
Confidence 0123445788889988888888886 46778888888887 699999999999999999988 7888999999999
Q ss_pred HHHHHhhhhcCCChhHHHHHHHHHHHHHh
Q psy12150 424 LAECNARLQDGASEYIQILDLGSIVIKAN 452 (456)
Q Consensus 424 l~~~~~~l~~g~~~~~ql~~l~~~~~~~~ 452 (456)
++++|+|++.||++++|+.++|++|....
T Consensus 323 l~~Ie~~ls~g~~~~~ql~aii~~~~~~~ 351 (360)
T KOG0990|consen 323 LADIEERLSKGCMQKEQLKAIIKNFAAEL 351 (360)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998764
No 17
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.1e-38 Score=315.75 Aligned_cols=270 Identities=22% Similarity=0.378 Sum_probs=239.6
Q ss_pred CCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCc---------------
Q psy12150 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM--------------- 94 (456)
Q Consensus 31 ~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~--------------- 94 (456)
...||.+||||++|++++||++++..|..++..++.+| |||+||+|+|||++|+.+++.+++..
T Consensus 4 ~~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~ 83 (484)
T PRK14956 4 THEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLE 83 (484)
T ss_pred CcchhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHH
Confidence 45899999999999999999999999999999999988 99999999999999999999998642
Q ss_pred ----cccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceE
Q psy12150 95 ----YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRF 170 (456)
Q Consensus 95 ----~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~l 170 (456)
...+++++++....+.+.+++....+...+.. +.++|+||||+|.|+.+++++|++.||+++..++|
T Consensus 84 i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~---------g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viF 154 (484)
T PRK14956 84 ITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMG---------GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVF 154 (484)
T ss_pred HHccCCccceeechhhcccHHHHHHHHHHHHhhhhc---------CCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEE
Confidence 12257888887777888888776655433322 26789999999999999999999999999999999
Q ss_pred EEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCC
Q psy12150 171 CLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG 250 (456)
Q Consensus 171 Il~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~ 250 (456)
|++++.+.++.++|++||+.++|.+++.+++..+++.++.++|+.++++++..|++.++||+|.+++.|+.+..+. ++.
T Consensus 155 ILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~-~~~ 233 (484)
T PRK14956 155 ILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFT-DSK 233 (484)
T ss_pred EeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhC-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887664 457
Q ss_pred CCHHHHHHHhCCCCHHHHHHHHcc---cc-hHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHHhc
Q psy12150 251 IVNEDVLEVTGVIPKPWIEKLLKV---DS-FQVLEKYIEDLILEAYSATQLF----DQFHDIVMLASS 310 (456)
Q Consensus 251 It~~~v~~~~~~~~~~~i~~l~~~---~~-~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~~~~~~ 310 (456)
||.+.|.++++....+.+++++++ ++ ...++.++..++..|++|..++ ..||+++++...
T Consensus 234 it~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~~~~r~l~~~~~~ 301 (484)
T PRK14956 234 LTGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLIRDS 301 (484)
T ss_pred cCHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999888 34 4689999999999999998755 778888866654
No 18
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=100.00 E-value=9e-39 Score=318.38 Aligned_cols=327 Identities=24% Similarity=0.372 Sum_probs=274.9
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc----------------
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY---------------- 95 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~---------------- 95 (456)
.||.+||||.+|++++|++..++.+.+++..++.+| ||||||||+|||++++.+++.+.++..
T Consensus 2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~ 81 (355)
T TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN 81 (355)
T ss_pred ccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 599999999999999999999999999999999988 999999999999999999999875321
Q ss_pred ---ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEE
Q psy12150 96 ---RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172 (456)
Q Consensus 96 ---~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl 172 (456)
..+++++++....+.+.+++.+......+.. +++++|||||+|.++.+.++.|++++++++..+++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~---------~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 82 SGSSLDVIEIDAASNNGVDDIREILDNVKYAPSS---------GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred cCCCCCEEEeeccccCCHHHHHHHHHHHhcCccc---------CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 2356777776555666666666655433333 2678999999999999999999999999999999999
Q ss_pred EecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCC
Q psy12150 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252 (456)
Q Consensus 173 ~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It 252 (456)
+++++.++.+++++||..++|.+++.+++..|+..+++++|+.+++++++.|++.++||+|.+.++++++..|.+ +.||
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~-~~it 231 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGN-GNIT 231 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcC-CCCC
Confidence 999888889999999999999999999999999999999999999999999999999999999999999998864 5699
Q ss_pred HHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy12150 253 NEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF----DQFHDIVMLASSLSDKQKALFKALETL 325 (456)
Q Consensus 253 ~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~~~~~~~~~~~~~l~~~~~~~ 325 (456)
.++|+++++...+.++|+++++ ++..+|..+++++...|++|..++ ++||+++......
T Consensus 232 ~~~v~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~~r~l~~~k~~~-------------- 297 (355)
T TIGR02397 232 YEDVNELLGLVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTP-------------- 297 (355)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcC--------------
Confidence 9999999999999999999998 899999999999999999998866 7777777221100
Q ss_pred HhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy12150 326 VETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDI 405 (456)
Q Consensus 326 ~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~~ 405 (456)
. + ..|.. .+....+.+.
T Consensus 298 ------------------~-----------------------------------------~---~~~i~-~~~~~~l~~~ 314 (355)
T TIGR02397 298 ------------------S-----------------------------------------N---LLAVL-ESEQEFLKEL 314 (355)
T ss_pred ------------------c-----------------------------------------c---ccccC-HHHHHHHHHH
Confidence 0 0 00111 1122333333
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHH
Q psy12150 406 VMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVI 449 (456)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~ 449 (456)
.. .++......+++.+.++|++++.|.+..+-+..++..+|
T Consensus 315 a~---~~s~~~L~~~l~~l~~~~~~lk~~~~~~l~le~l~~~~~ 355 (355)
T TIGR02397 315 AL---KLSLEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355 (355)
T ss_pred HH---hCCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhC
Confidence 33 678899999999999999999999999999999988764
No 19
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1e-38 Score=330.89 Aligned_cols=329 Identities=23% Similarity=0.379 Sum_probs=280.6
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCc-----------------
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM----------------- 94 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~----------------- 94 (456)
..|.++|||++|++++||+++++.|++++..++.+| |||+||+|+|||++++.+++.+++..
T Consensus 4 ~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~ 83 (559)
T PRK05563 4 QALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAIT 83 (559)
T ss_pred HHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHh
Confidence 568899999999999999999999999999999999 99999999999999999999987532
Q ss_pred --cccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEE
Q psy12150 95 --YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172 (456)
Q Consensus 95 --~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl 172 (456)
...+++++++....+.+.+++........+.. ++++|+||||+|.|+.+.++.|++++++|+..++||+
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~---------~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIl 154 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSE---------AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFIL 154 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCccc---------CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEE
Confidence 12467889888778888888777665544332 3788999999999999999999999999999999999
Q ss_pred EecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCC
Q psy12150 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252 (456)
Q Consensus 173 ~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It 252 (456)
+++.+.++.+++++||..++|.+++.+++..|+..+++++|+.++++++..|+..++||+|.+++.|+++..|. ++.||
T Consensus 155 att~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~-~~~It 233 (559)
T PRK05563 155 ATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFG-DGKVT 233 (559)
T ss_pred EeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998885 66899
Q ss_pred HHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy12150 253 NEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF----DQFHDIVMLASSLSDKQKALFKALETL 325 (456)
Q Consensus 253 ~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~~~~~~~~~~~~~l~~~~~~~ 325 (456)
.++|.++++....+.+++++++ ++..+++.++++++..|+++..++ ++||+++......+
T Consensus 234 ~~~V~~vlg~~~~~~i~~l~~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~Rdll~~k~~~~------------- 300 (559)
T PRK05563 234 YEDALEVTGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPE------------- 300 (559)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCc-------------
Confidence 9999999999999999999998 899999999999999999998865 66777761110000
Q ss_pred HhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy12150 326 VETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDI 405 (456)
Q Consensus 326 ~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~~ 405 (456)
.. .-+.+ .+.+..+.+.
T Consensus 301 -----------------------------------------------------------~~---~~~~~-~~~~~~~~~~ 317 (559)
T PRK05563 301 -----------------------------------------------------------LE---ILDES-TENDELFKEL 317 (559)
T ss_pred -----------------------------------------------------------cc---ccccC-HHHHHHHHHH
Confidence 00 00011 1112222222
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHH
Q psy12150 406 VMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 450 (456)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~ 450 (456)
.. .++...+.+++..|.+++.+++.|.+..+.+..++..++.
T Consensus 318 a~---~~s~~~L~~~i~~L~~~~~~lk~~~~~~l~lE~lllkl~~ 359 (559)
T PRK05563 318 SE---KLDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCE 359 (559)
T ss_pred HH---hCCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHh
Confidence 22 5788899999999999999999999999999999999887
No 20
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=8.8e-39 Score=322.13 Aligned_cols=260 Identities=23% Similarity=0.384 Sum_probs=237.1
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCc-----------------
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM----------------- 94 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~----------------- 94 (456)
+.|.+||||++|++++||+.+++.|.+++..++.+| |||+||+|+||||+|+.+++.+++..
T Consensus 1 ~~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~ 80 (491)
T PRK14964 1 MNLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIK 80 (491)
T ss_pred CChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHh
Confidence 458999999999999999999999999999999987 99999999999999999999886421
Q ss_pred --cccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEE
Q psy12150 95 --YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172 (456)
Q Consensus 95 --~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl 172 (456)
...+++++|+++..+.+++++.+......+..+ +++++||||+|.|+.++++.|+++||+|++.++||+
T Consensus 81 ~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~---------~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIl 151 (491)
T PRK14964 81 NSNHPDVIEIDAASNTSVDDIKVILENSCYLPISS---------KFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFIL 151 (491)
T ss_pred ccCCCCEEEEecccCCCHHHHHHHHHHHHhccccC---------CceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 234789999998899999999887776555443 788999999999999999999999999999999999
Q ss_pred EecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCC
Q psy12150 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252 (456)
Q Consensus 173 ~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It 252 (456)
+++...++.+++++||..++|.+++.+++..|+..+++++|+.+++++++.|++.++||+|.++++|++++.|.+ +.||
T Consensus 152 atte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~~-~~It 230 (491)
T PRK14964 152 ATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSN-NKIS 230 (491)
T ss_pred EeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC-CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998865 5899
Q ss_pred HHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHHHHHHH
Q psy12150 253 NEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHD 303 (456)
Q Consensus 253 ~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~~q~~~ 303 (456)
.++|.++++....+.+|+++++ ++.++|+.++++|+..+ +|..+++.+-.
T Consensus 231 ~e~V~~llg~~~~~~If~L~~aI~~~d~~~Al~~l~~Ll~~g-~~~~i~~~l~~ 283 (491)
T PRK14964 231 EKSVRDLLGCVDKHILEDLVEAILLGDAQSALNVFRELCNTS-NPVIILEGMLQ 283 (491)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CHHHHHHHHHH
Confidence 9999999999999999999999 99999999999999875 68777754433
No 21
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=100.00 E-value=2.1e-38 Score=313.55 Aligned_cols=307 Identities=32% Similarity=0.509 Sum_probs=253.7
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcC--
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG-- 109 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~-- 109 (456)
.++|.+||||++|++++|++.+++.|..++..++.++++|+||||+|||++++++++.+.+..+...++++|+++...
T Consensus 2 ~~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (337)
T PRK12402 2 APLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQG 81 (337)
T ss_pred CCchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcc
Confidence 479999999999999999999999999999999888999999999999999999999987655445667777764210
Q ss_pred ------------------------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc
Q psy12150 110 ------------------------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET 165 (456)
Q Consensus 110 ------------------------~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~ 165 (456)
.+.+++.+..+....... +++++|||||++.++.+.++.|.+++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~vlilDe~~~l~~~~~~~L~~~le~~~ 153 (337)
T PRK12402 82 KKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLS--------ADYKTILLDNAEALREDAQQALRRIMEQYS 153 (337)
T ss_pred hhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCC--------CCCcEEEEeCcccCCHHHHHHHHHHHHhcc
Confidence 111222222222111111 256799999999999989999999999988
Q ss_pred CcceEEEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q psy12150 166 KSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245 (456)
Q Consensus 166 ~~~~lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~ 245 (456)
..+++|++++.+.++.+++++||..+.|.+++.+++..++..++.++|+.+++++++.|+..++||+|.+++.+++++.
T Consensus 154 ~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~~- 232 (337)
T PRK12402 154 RTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAAL- 232 (337)
T ss_pred CCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH-
Confidence 8888999998888889999999999999999999999999999999999999999999999999999999999998763
Q ss_pred hCCCCCCHHHHHHHhCC-CCHHHHHHHHcccchHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12150 246 KGGEGIVNEDVLEVTGV-IPKPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALET 324 (456)
Q Consensus 246 ~~~~~It~~~v~~~~~~-~~~~~i~~l~~~~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~~~~~~~~~~~~~l~~~~~~ 324 (456)
+++.||.++|.++++. ..++++|+++++
T Consensus 233 -~~~~It~~~v~~~~~~~~~~~~i~~l~~a-------------------------------------------------- 261 (337)
T PRK12402 233 -AAGEITMEAAYEALGDVGTDEVIESLLDA-------------------------------------------------- 261 (337)
T ss_pred -cCCCCCHHHHHHHhCCCCCHHHHHHHHHH--------------------------------------------------
Confidence 3458999999999997 568899999988
Q ss_pred HHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHH-HcCCCHHHHHHHHH
Q psy12150 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLI-LEAYSATQLFDQFH 403 (456)
Q Consensus 325 ~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~s~~di~~~l~ 403 (456)
+.++++..+...+..+. ++|++..+|++.|+
T Consensus 262 ------------------------------------------------i~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~ 293 (337)
T PRK12402 262 ------------------------------------------------AEAGDFTDARKTLDDLLIDEGLSGGEVLEELL 293 (337)
T ss_pred ------------------------------------------------HHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 00223333333455553 78888888988887
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHH
Q psy12150 404 DIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIV 448 (456)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~ 448 (456)
..... .+++..+.+++..++++|+++++|.++.++|..+++.+
T Consensus 294 ~~~~~--~~~~~~l~~~~~~l~~~d~~lk~g~~~~~~le~~i~~~ 336 (337)
T PRK12402 294 RVARS--RYRGDNLARLHRLAADADARLTDGANDRIQLEALLAEL 336 (337)
T ss_pred HHHHH--HCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 76654 48999999999999999999999999999999999875
No 22
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.7e-38 Score=322.82 Aligned_cols=260 Identities=26% Similarity=0.363 Sum_probs=232.5
Q ss_pred chhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCC------------------cc
Q psy12150 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGD------------------MY 95 (456)
Q Consensus 35 w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~------------------~~ 95 (456)
+.+||||.+|++++||++++..|.+++..++++| +|||||||+|||++++++++.+.+. ..
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~ 83 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGA 83 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCC
Confidence 4499999999999999999999999999999999 7999999999999999999998642 11
Q ss_pred ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEec
Q psy12150 96 RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175 (456)
Q Consensus 96 ~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~ 175 (456)
..+++++++.+..+.+.+++....+...+.. +++++|||||+|.++...++.|++++++++..++||++++
T Consensus 84 h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~---------~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~ 154 (504)
T PRK14963 84 HPDVLEIDAASNNSVEDVRDLREKVLLAPLR---------GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATT 154 (504)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhcccc---------CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 2357888888777788887765544433332 2678999999999999999999999999999999999999
Q ss_pred CcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHH
Q psy12150 176 YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255 (456)
Q Consensus 176 ~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~ 255 (456)
.+.++.+.+.+||..++|.+++.+++..|+..+++++|+.+++++++.|++.++||+|.++++|+++..+ ++.||.++
T Consensus 155 ~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~--~~~It~~~ 232 (504)
T PRK14963 155 EPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLAL--GTPVTRKQ 232 (504)
T ss_pred ChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998775 45899999
Q ss_pred HHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHH----HHHHHHH
Q psy12150 256 VLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF----DQFHDIV 305 (456)
Q Consensus 256 v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~ 305 (456)
|.++++...++++|+++++ +++++|+.++++|+..|++|..|+ +|||.++
T Consensus 233 V~~~l~~~~~~~if~Li~al~~~d~~~Al~~l~~Ll~~G~~~~~Il~~L~~~~r~ll 289 (504)
T PRK14963 233 VEEALGLPPQERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFRAAL 289 (504)
T ss_pred HHHHHCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 899999999999999999999877 5666555
No 23
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4e-38 Score=312.53 Aligned_cols=330 Identities=21% Similarity=0.271 Sum_probs=272.1
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc---------------
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY--------------- 95 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~--------------- 95 (456)
-.||.+||||++|++++||+++++.+++.+..++.+| |+|+||+|+|||++|+++++.+.+...
T Consensus 3 ~~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~ 82 (363)
T PRK14961 3 YQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEI 82 (363)
T ss_pred cHHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 3689999999999999999999999999999999988 899999999999999999999874211
Q ss_pred ----ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEE
Q psy12150 96 ----RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (456)
Q Consensus 96 ----~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lI 171 (456)
..++.++++.+....+.+++.+..+...+.. ++++++||||+|.++...++.|++++++++..++||
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~---------~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fI 153 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSK---------SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFI 153 (363)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhcCccc---------CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 1246667666545667777666554433222 267899999999999999999999999999999999
Q ss_pred EEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy12150 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (456)
Q Consensus 172 l~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~I 251 (456)
+++++..++.+++.+||..++|.+++.+++.+|+..+++++|+.+++++++.++..++||+|.+++.+++++.+ +.+.|
T Consensus 154 l~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~-~~~~I 232 (363)
T PRK14961 154 LATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINL-GKGNI 232 (363)
T ss_pred EEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cCCCC
Confidence 99998889999999999999999999999999999999999999999999999999999999999999999887 46789
Q ss_pred CHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHHHHH----HHHHHHHhcCCHHHHHHHHHHHH
Q psy12150 252 VNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQF----HDIVMLASSLSDKQKALFKALET 324 (456)
Q Consensus 252 t~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~~q~----~~l~~~~~~~~~~~~~l~~~~~~ 324 (456)
|.++|.++++..+++.+|+++++ ++..+++.++++++..|++|.+++..+ |++++....
T Consensus 233 t~~~v~~~l~~~~~~~i~~l~~ai~~~~~~~~~~~~~~l~~~g~~~~~il~~l~~~~~d~l~~~~~-------------- 298 (363)
T PRK14961 233 NIKNVTDMLGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSF-------------- 298 (363)
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhc--------------
Confidence 99999999999999999999999 899999999999999999999987544 444411100
Q ss_pred HHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHH-HHHHHH
Q psy12150 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQ-LFDQFH 403 (456)
Q Consensus 325 ~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~d-i~~~l~ 403 (456)
+ ... .....| -...+.
T Consensus 299 -------------------------------------~---------------------~~~-----~~~~~~~~~~~~~ 315 (363)
T PRK14961 299 -------------------------------------P---------------------KIW-----NTIFIKNYKNQIQ 315 (363)
T ss_pred -------------------------------------C---------------------chh-----hcccchHHHHHHH
Confidence 0 000 000111 223333
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHH
Q psy12150 404 DIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~ 451 (456)
+... .++......+++.+-+...+|+...+..+-+..++..+..+
T Consensus 316 ~~~~---~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~e~~l~~~~~~ 360 (363)
T PRK14961 316 KIAQ---NNKKTNIQLCYQILLNGRKELKFAPDQKIGVEMTLLRAINA 360 (363)
T ss_pred HHHH---cCCHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHhC
Confidence 3333 56788888889999999999999999999998888777654
No 24
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.9e-38 Score=327.45 Aligned_cols=328 Identities=21% Similarity=0.315 Sum_probs=278.4
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCc-----------------
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM----------------- 94 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~----------------- 94 (456)
..|.+||||.+|++++||+.++..|+.++++++++| ||||||+|+|||++++++++.+.+..
T Consensus 4 ~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~ 83 (563)
T PRK06647 4 RGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSID 83 (563)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHH
Confidence 468899999999999999999999999999999998 99999999999999999999997631
Q ss_pred --cccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEE
Q psy12150 95 --YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172 (456)
Q Consensus 95 --~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl 172 (456)
...+++++++....+.+.+++........+.. ++++++||||+|.|+..+++.|++++++|++.++||+
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~---------~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~ 154 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPAS---------SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIF 154 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhc---------CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEE
Confidence 12356777776656778887766555444433 3788999999999999999999999999999999999
Q ss_pred EecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCC
Q psy12150 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252 (456)
Q Consensus 173 ~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It 252 (456)
+++...++.++|++||..++|.+++.+++..|+..+++++|+.++++++..|++.++||+|.++++|++++.|.+ +.||
T Consensus 155 ~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~-~~It 233 (563)
T PRK06647 155 ATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSD-SDIT 233 (563)
T ss_pred ecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcC-CCCC
Confidence 999889999999999999999999999999999999999999999999999999999999999999999988854 6799
Q ss_pred HHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy12150 253 NEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF----DQFHDIVMLASSLSDKQKALFKALETL 325 (456)
Q Consensus 253 ~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~~~~~~~~~~~~~l~~~~~~~ 325 (456)
.++|.++++....+.+++++++ ++..+++.++++++..|++|..++ ++||++++.....++.
T Consensus 234 ~e~V~~llg~~~~~~if~LidaI~~~D~~~al~~l~~Ll~~G~d~~~iL~~Ll~~fRdLL~vK~G~~~~----------- 302 (563)
T PRK06647 234 LEQIRSKMGLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGIKNE----------- 302 (563)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCchh-----------
Confidence 9999999999999999999999 999999999999999999998866 7888887222110000
Q ss_pred HhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy12150 326 VETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDI 405 (456)
Q Consensus 326 ~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~~ 405 (456)
..-|.....+ .+.
T Consensus 303 ---------------------------------------------------------------~~l~~~~e~l----~k~ 315 (563)
T PRK06647 303 ---------------------------------------------------------------AFIGIKAERL----PEK 315 (563)
T ss_pred ---------------------------------------------------------------hhccccHHHH----HHH
Confidence 0001222221 112
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHH
Q psy12150 406 VMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~ 451 (456)
.. .++.....+++..|.+++++++...+.++-+..++..++..
T Consensus 316 ~~---~~s~~~L~~~l~~Llea~~~lK~n~~~~l~lE~llikl~~~ 358 (563)
T PRK06647 316 LR---EFDLSQIERAISVLLETYRDLQFSVNPRYELEINFSKILRL 358 (563)
T ss_pred HH---hCCHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 22 47888899999999999999999999999999999888875
No 25
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.8e-38 Score=323.42 Aligned_cols=264 Identities=22% Similarity=0.332 Sum_probs=239.0
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc---------------
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY--------------- 95 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~--------------- 95 (456)
-.+|.+||||++|++++||+++++.|.+++..++.+| |||+||+|+|||++|+.+++.+++...
T Consensus 3 y~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 82 (509)
T PRK14958 3 HQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREI 82 (509)
T ss_pred chhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHH
Confidence 4689999999999999999999999999999999999 999999999999999999999986321
Q ss_pred ----ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEE
Q psy12150 96 ----RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (456)
Q Consensus 96 ----~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lI 171 (456)
..+++++++.+..+++++++.+......+.. +.++|+||||+|.|+.+.+++|+++||+++++++||
T Consensus 83 ~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~---------~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 83 DEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTK---------GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred hcCCCceEEEEcccccCCHHHHHHHHHHHhhcccc---------CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 1258899988888899998877765543322 267899999999999999999999999999999999
Q ss_pred EEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy12150 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (456)
Q Consensus 172 l~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~I 251 (456)
++++++.++.+++++||..++|.+++.+++..|+..+++++|+.+++++++.|++.++||+|.+++.+++++.| +++.|
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~-~~~~I 232 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAY-GNGKV 232 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhc-CCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887 46789
Q ss_pred CHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHH----HHHHHHH
Q psy12150 252 VNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF----DQFHDIV 305 (456)
Q Consensus 252 t~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~ 305 (456)
|.++|.++++...++.+|+++++ ++.++++..+++|+..|++|..++ ..+|.++
T Consensus 233 t~~~V~~~lg~~~~~~i~~ll~al~~~d~~~~l~~~~~l~~~g~~~~~il~~l~~~~~~~~ 293 (509)
T PRK14958 233 LIADVKTMLGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIA 293 (509)
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 899999999999999999997765 4555555
No 26
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=9.8e-38 Score=320.95 Aligned_cols=264 Identities=23% Similarity=0.371 Sum_probs=236.3
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc---------------
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY--------------- 95 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~--------------- 95 (456)
-..|.+||||++|++++||+++++.|++++.+++++| |||+||+|+|||++++.+++.+++...
T Consensus 3 Y~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I 82 (830)
T PRK07003 3 YQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREI 82 (830)
T ss_pred cHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHH
Confidence 3579999999999999999999999999999999998 899999999999999999999976311
Q ss_pred ----ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEE
Q psy12150 96 ----RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (456)
Q Consensus 96 ----~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lI 171 (456)
..+++++|..+..+.+++++.+......... .++||+||||+|.|+...++.|++.||+++.+++||
T Consensus 83 ~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~---------gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FI 153 (830)
T PRK07003 83 DEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVD---------ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFI 153 (830)
T ss_pred hcCCCceEEEecccccccHHHHHHHHHHHHhcccc---------CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEE
Confidence 1258899998888888888887765433322 267899999999999999999999999999999999
Q ss_pred EEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy12150 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (456)
Q Consensus 172 l~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~I 251 (456)
++|++..++.++|+|||..|+|.+++.+++..+|++++.++|+.++++++..|++.++||+|.+++.++.+..+. ++.|
T Consensus 154 LaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~-~~~I 232 (830)
T PRK07003 154 LATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYS-ANEV 232 (830)
T ss_pred EEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877764 4579
Q ss_pred CHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHH----HHHHHHHHH
Q psy12150 252 VNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ----LFDQFHDIV 305 (456)
Q Consensus 252 t~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~----i~~q~~~l~ 305 (456)
+.+.|..+++....+.+++++++ +++.+++.++++|...|+++.. |++.||+++
T Consensus 233 t~~~V~~~LG~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~ 293 (830)
T PRK07003 233 TETAVSGMLGALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFSTALQDLASLLHRIA 293 (830)
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999999999999988755 446666655
No 27
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1e-37 Score=318.04 Aligned_cols=263 Identities=22% Similarity=0.386 Sum_probs=236.0
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc----------------
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY---------------- 95 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~---------------- 95 (456)
.+|.+||||++|++++|++.+++.|.+++.+++.+| |||+||+|+|||++|+++++.+++...
T Consensus 3 ~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~ 82 (702)
T PRK14960 3 QVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVN 82 (702)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHh
Confidence 579999999999999999999999999999999988 899999999999999999999876211
Q ss_pred ---ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEE
Q psy12150 96 ---RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172 (456)
Q Consensus 96 ---~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl 172 (456)
..+++++|+++..+.+.+++.+......+.. ++++|+||||+|.|+...++.|+++|++++..++||+
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~---------gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FIL 153 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQ---------GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLF 153 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhc---------CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEE
Confidence 1267889998778888888877665443322 2678999999999999999999999999999999999
Q ss_pred EecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCC
Q psy12150 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252 (456)
Q Consensus 173 ~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It 252 (456)
+++++.++..++++||..++|.+++.+++.+++..+++++|+.++++++..|++.++||+|.+++.++++..+ +++.|+
T Consensus 154 aTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIay-g~g~IT 232 (702)
T PRK14960 154 ATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAY-GQGAVH 232 (702)
T ss_pred EECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cCCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998877 467899
Q ss_pred HHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHH----HHHHHHH
Q psy12150 253 NEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF----DQFHDIV 305 (456)
Q Consensus 253 ~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~ 305 (456)
.++|..+++....+.+|+++++ ++..+++.+++++...|+++..++ ..+|+++
T Consensus 233 ~edV~~lLG~~d~e~IfdLldAI~k~d~~~al~~L~el~~~g~d~~~~l~~Ll~~lrdll 292 (702)
T PRK14960 233 HQDVKEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELA 292 (702)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 889999999999999999987655 4445544
No 28
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.5e-37 Score=325.31 Aligned_cols=330 Identities=20% Similarity=0.286 Sum_probs=276.7
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc----------------
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY---------------- 95 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~---------------- 95 (456)
..|.+||||.+|++++||+.++..|+.++..++.+| ||||||+|+|||++++.+++.+.+...
T Consensus 4 ~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i 83 (585)
T PRK14950 4 QVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAI 83 (585)
T ss_pred HHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHH
Confidence 458899999999999999999999999999999888 899999999999999999999875321
Q ss_pred ----ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEE
Q psy12150 96 ----RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (456)
Q Consensus 96 ----~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lI 171 (456)
..++++++.....+.+.+++.+..+...+.. ++++||||||+|.|+.+.++.|+++|++++..++||
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~---------~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~I 154 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPAL---------ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFI 154 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCccc---------CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEE
Confidence 1246777876667778887766554433332 377899999999999999999999999999999999
Q ss_pred EEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy12150 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (456)
Q Consensus 172 l~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~I 251 (456)
+++++..++.+.+++||..++|.+++..++..++..++.++|+.++++++..|+..++||+|.++++|++++.|. ++.|
T Consensus 155 l~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~-~~~I 233 (585)
T PRK14950 155 LATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTY-GGEI 233 (585)
T ss_pred EEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCC
Confidence 999998899999999999999999999999999999999999999999999999999999999999999998874 5689
Q ss_pred CHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12150 252 VNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF----DQFHDIVMLASSLSDKQKALFKALET 324 (456)
Q Consensus 252 t~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~~~~~~~~~~~~~l~~~~~~ 324 (456)
|.++|.++++...+.++|+++++ ++..+++.++++|+..|+++..++ ++||+++.+.....
T Consensus 234 t~e~V~~ll~~s~~~~vf~Lidal~~~d~~~al~~l~~L~~~g~~~~~il~~L~~~lR~Ll~lk~g~~------------ 301 (585)
T PRK14950 234 SLSQVQSLLGISGDEEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGAD------------ 301 (585)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCc------------
Confidence 99999999999999999999999 999999999999999999998876 56666662110000
Q ss_pred HHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy12150 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHD 404 (456)
Q Consensus 325 ~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~ 404 (456)
.. + -|+.. +-+..+.+
T Consensus 302 ------------------------------------------------------------~~-~--l~i~p-~~~~~~~~ 317 (585)
T PRK14950 302 ------------------------------------------------------------RS-L--LDLTA-DEKAALQK 317 (585)
T ss_pred ------------------------------------------------------------cc-c--ccCCH-HHHHHHHH
Confidence 00 0 00111 22223333
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHH
Q psy12150 405 IVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~ 451 (456)
... .++...+..++..++++|+.++.|.+..+.+.-++..++..
T Consensus 318 qa~---~~s~~~L~~~l~~l~~~D~~lK~~~~~~l~lE~~l~~~~~~ 361 (585)
T PRK14950 318 VSQ---IANLEALTKWVKAFSQLDFQLRTTSYGQLPLELAVIEALLV 361 (585)
T ss_pred HHh---cCCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcC
Confidence 333 68999999999999999999999998888898888888764
No 29
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.3e-38 Score=318.19 Aligned_cols=263 Identities=25% Similarity=0.414 Sum_probs=235.5
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc----------------
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY---------------- 95 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~---------------- 95 (456)
..|.++|||++|++++||++++..|...+..++++| ++||||||+|||++|+++++.+.+...
T Consensus 2 ~~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~ 81 (472)
T PRK14962 2 EALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81 (472)
T ss_pred chhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHh
Confidence 479999999999999999999999999999999988 999999999999999999999876321
Q ss_pred ---ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEE
Q psy12150 96 ---RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172 (456)
Q Consensus 96 ---~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl 172 (456)
...+++++++...+.+.+++........+.. +++++|||||+|.|+.+.++.|+++++++++.+++|+
T Consensus 82 ~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~---------~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Il 152 (472)
T PRK14962 82 EGTFMDVIELDAASNRGIDEIRKIRDAVGYRPME---------GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVL 152 (472)
T ss_pred cCCCCccEEEeCcccCCHHHHHHHHHHHhhChhc---------CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 1257889998778888887644433322222 2678999999999999999999999999999999999
Q ss_pred EecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCC
Q psy12150 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252 (456)
Q Consensus 173 ~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It 252 (456)
+++.+.++.+++.+||..++|.+++.+++..+++.+++.+|+.+++++++.|++.++||+|.+++.|++++.+++ +.||
T Consensus 153 attn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~-~~It 231 (472)
T PRK14962 153 ATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSE-GKIT 231 (472)
T ss_pred EeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC-CCCC
Confidence 998888999999999999999999999999999999999999999999999999999999999999999888754 4599
Q ss_pred HHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy12150 253 NEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305 (456)
Q Consensus 253 ~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~ 305 (456)
.++|.++++..+++.+++++++ ++.++|+.++.+|+..|++|..+++++-.+.
T Consensus 232 ~e~V~~~l~~~~~~~i~~li~si~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~ 287 (472)
T PRK14962 232 LETVHEALGLIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDL 287 (472)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999999999999999999 9999999999999999999999998876655
No 30
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.8e-37 Score=314.43 Aligned_cols=264 Identities=28% Similarity=0.445 Sum_probs=236.0
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCc------c---------
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM------Y--------- 95 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~------~--------- 95 (456)
-.||.++|||.+|++++||+.++..|+++++.++++| ||||||+|+|||++++.+++.+++.. +
T Consensus 3 y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i 82 (486)
T PRK14953 3 YIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEI 82 (486)
T ss_pred chHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHH
Confidence 3599999999999999999999999999999999998 89999999999999999999987411 0
Q ss_pred ----ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEE
Q psy12150 96 ----RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (456)
Q Consensus 96 ----~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lI 171 (456)
..++++++++...+.+.++.........+.. ++++|+||||+|.|+.+.++.|+++++++++.++||
T Consensus 83 ~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~---------~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~I 153 (486)
T PRK14953 83 DKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIK---------GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFI 153 (486)
T ss_pred hcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCccc---------CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 1246778877777788787765555444333 277899999999999999999999999999999999
Q ss_pred EEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy12150 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (456)
Q Consensus 172 l~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~I 251 (456)
++++...++.+++.+||..++|.+++.+++..|+..+++.+|+.+++++++.|++.++||+|.++++|++++.++ ++.|
T Consensus 154 l~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~-~~~I 232 (486)
T PRK14953 154 LCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYG-EGKV 232 (486)
T ss_pred EEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCc
Confidence 999988899999999999999999999999999999999999999999999999999999999999999998874 6689
Q ss_pred CHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHH----HHHHHHH
Q psy12150 252 VNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF----DQFHDIV 305 (456)
Q Consensus 252 t~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~ 305 (456)
|.++|.++++.....++|+++++ ++..+|+.++++|+..|++|..++ ++||+++
T Consensus 233 t~~~V~~~lg~~~~~~vf~Li~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~~rdll 293 (486)
T PRK14953 233 TIKVVEEFLGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNIL 293 (486)
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 899999999999999999998876 5666665
No 31
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.8e-37 Score=323.33 Aligned_cols=332 Identities=22% Similarity=0.304 Sum_probs=275.5
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc---------------
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY--------------- 95 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~--------------- 95 (456)
-.+|.+||||++|++++||+++++.|++++..++++| |||+||+|+|||++++++++.+++...
T Consensus 3 Y~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i 82 (944)
T PRK14949 3 YQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEI 82 (944)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHH
Confidence 3689999999999999999999999999999999999 899999999999999999999987411
Q ss_pred ----ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEE
Q psy12150 96 ----RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (456)
Q Consensus 96 ----~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lI 171 (456)
...++++++.+..+.+.+++.+..+...+.. +.++|+||||+|.|+.+.++.|++.||+|+.+++||
T Consensus 83 ~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~---------gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFI 153 (944)
T PRK14949 83 AQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSR---------GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFL 153 (944)
T ss_pred hcCCCceEEEeccccccCHHHHHHHHHHHHhhhhc---------CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 1235777877667788888877766544322 267899999999999999999999999999999999
Q ss_pred EEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy12150 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (456)
Q Consensus 172 l~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~I 251 (456)
++|++..++.++|++||.+++|.+++.+++..+|..++..+++.+++++++.|+..++|++|.+++.++.+..+ +.+.+
T Consensus 154 LaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~-~~~~I 232 (944)
T PRK14949 154 LATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAF-GGGQV 232 (944)
T ss_pred EECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887765 45689
Q ss_pred CHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q psy12150 252 VNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVET 328 (456)
Q Consensus 252 t~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 328 (456)
+.+.|.++++......+..+++. ++...++.++..|+..|+++..|++.+..++
T Consensus 233 t~~~V~~llG~iD~~~V~~llksI~~~D~~aaL~~l~~Ll~~G~D~~~ILr~Ll~~l----------------------- 289 (944)
T PRK14949 233 MLTQVQTMLGSIDEQHVIALLKALTDADIGVLMQTCAQVLAFGADAQEVLRSLLELL----------------------- 289 (944)
T ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-----------------------
Confidence 99999999999888888888877 7999999999999999999999887765555
Q ss_pred chHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q psy12150 329 SGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS 408 (456)
Q Consensus 329 ~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~~~~~ 408 (456)
|.++ +.+... ....+.. |+ ..+..+..
T Consensus 290 -----RDil-l~k~~~---------------------------------------~~~~l~i--~~-----e~i~~~a~- 316 (944)
T PRK14949 290 -----HQIT-LTQFAP---------------------------------------AAAQQSL--YS-----EQIRAFAE- 316 (944)
T ss_pred -----HHHH-HHHhcc---------------------------------------chhhccc--hH-----HHHHHHHH-
Confidence 1111 000000 0000000 00 22333333
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHH
Q psy12150 409 ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 409 ~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~ 451 (456)
.++...+..+++.+-+...+|....+.++-|..++..++.+
T Consensus 317 --~~s~~~L~~~ie~l~~a~~~L~~n~n~rl~lE~~LLrl~~~ 357 (944)
T PRK14949 317 --QLSPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAF 357 (944)
T ss_pred --hCCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHc
Confidence 57888889999999999999999999999999888887765
No 32
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.9e-37 Score=320.84 Aligned_cols=328 Identities=24% Similarity=0.385 Sum_probs=274.9
Q ss_pred CCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc--------------
Q psy12150 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY-------------- 95 (456)
Q Consensus 31 ~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~-------------- 95 (456)
.-.+|.++|||.+|++++||+.+++.|++++..++.+| ||||||+|+|||++|+.+++.+.+...
T Consensus 4 ~y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~ 83 (725)
T PRK07133 4 KYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENV 83 (725)
T ss_pred chhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhh
Confidence 34789999999999999999999999999999999988 999999999999999999999876321
Q ss_pred --ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEE
Q psy12150 96 --RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLI 173 (456)
Q Consensus 96 --~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~ 173 (456)
...++++++....+.+.+++.+..+...+..+ +++|+||||+|.|+.+++++|+++||+|++.++||++
T Consensus 84 ~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g---------~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILa 154 (725)
T PRK07133 84 NNSLDIIEMDAASNNGVDEIRELIENVKNLPTQS---------KYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILA 154 (725)
T ss_pred cCCCcEEEEeccccCCHHHHHHHHHHHHhchhcC---------CCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEE
Confidence 22456677665567788888777666555443 7889999999999999999999999999999999999
Q ss_pred ecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCH
Q psy12150 174 CNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253 (456)
Q Consensus 174 ~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~ 253 (456)
++.+.++.+++++||++++|.+++.+++..||..++.++|+.+++++++.++..++|++|.+++.+++++.|. .+.|+.
T Consensus 155 Tte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~-~~~It~ 233 (725)
T PRK07133 155 TTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFG-NNKITL 233 (725)
T ss_pred cCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998885 456999
Q ss_pred HHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHH
Q psy12150 254 EDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQF----HDIVMLASSLSDKQKALFKALETLV 326 (456)
Q Consensus 254 ~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~~q~----~~l~~~~~~~~~~~~~l~~~~~~~~ 326 (456)
++|.++++....+.++.++++ ++..+++.++++|+..|++|..+++.+ |++++...
T Consensus 234 e~V~ellg~~~~e~If~Ll~aI~~kd~~~aL~~l~~L~~~ged~~~iL~~Ll~~~RDlLl~k~----------------- 296 (725)
T PRK07133 234 KNVEELFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNK----------------- 296 (725)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh-----------------
Confidence 999999999999999999998 899999999999999999998877544 44441110
Q ss_pred hcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy12150 327 ETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIV 406 (456)
Q Consensus 327 ~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~~~ 406 (456)
+ |. .. +. ...+..+ +..
T Consensus 297 ----------------~------------------~~---------------------~~-ll-~~~d~~~-l~~----- 313 (725)
T PRK07133 297 ----------------T------------------KD---------------------NS-LL-EYYSEED-LEK----- 313 (725)
T ss_pred ----------------c------------------Cc---------------------hh-hh-ccCCHHH-HHH-----
Confidence 0 00 00 00 0011111 111
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHH
Q psy12150 407 MSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 407 ~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~ 451 (456)
. .++......++..+.++..+|....+..+.+..++..++..
T Consensus 314 --~-~~s~~~l~~~le~i~~~~~~L~~n~n~~l~lE~lll~L~~~ 355 (725)
T PRK07133 314 --L-KIDDDFAYKFIEILFDLLKDLKISDNPNDTLEILIIKLLAL 355 (725)
T ss_pred --h-cCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhc
Confidence 1 35677778888999999999999999999999999888765
No 33
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.1e-37 Score=314.35 Aligned_cols=265 Identities=20% Similarity=0.341 Sum_probs=234.2
Q ss_pred CCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCc---------------
Q psy12150 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM--------------- 94 (456)
Q Consensus 31 ~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~--------------- 94 (456)
...||.+||||++|++++|++.++..|.+++++++.+| |||+||+|+|||++|+.+++.+++..
T Consensus 2 s~~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~ 81 (624)
T PRK14959 2 SHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRK 81 (624)
T ss_pred CcchHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHH
Confidence 35799999999999999999999999999999998766 99999999999999999999998631
Q ss_pred ----cccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceE
Q psy12150 95 ----YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRF 170 (456)
Q Consensus 95 ----~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~l 170 (456)
...+++++++....+++.++.....+...+.. ++++||||||+|.|+.+.++.|+++||+++..++|
T Consensus 82 i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~---------g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~if 152 (624)
T PRK14959 82 VTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPME---------GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTF 152 (624)
T ss_pred HhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhc---------CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEE
Confidence 12247788877667788887755444433322 26789999999999999999999999999999999
Q ss_pred EEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCC
Q psy12150 171 CLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG 250 (456)
Q Consensus 171 Il~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~ 250 (456)
|++++.+.++.+.|++||..++|.+++.+++..+|..++.++++.+++++++.|++.++||+|.+++.|++++ +.+.+.
T Consensus 153 ILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll-~~g~~~ 231 (624)
T PRK14959 153 VLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVL-ALGESR 231 (624)
T ss_pred EEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-HhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 346678
Q ss_pred CCHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHH----HHHHHHH
Q psy12150 251 IVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF----DQFHDIV 305 (456)
Q Consensus 251 It~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~ 305 (456)
||.++|..+++....+.+++++++ ++...++.++.+|+..++++..++ .+||+++
T Consensus 232 It~d~V~~~lg~~~~e~vfeLl~AL~~~D~~aal~~l~~Ll~~g~d~~~iL~~Ll~~~RdLL 293 (624)
T PRK14959 232 LTIDGARGVLGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLF 293 (624)
T ss_pred cCHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988 799999999999999999997654 6777777
No 34
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1e-36 Score=315.00 Aligned_cols=264 Identities=23% Similarity=0.390 Sum_probs=238.2
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCc----------------
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM---------------- 94 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~---------------- 94 (456)
-..|.+||||++|++++||+++++.|++++..++.+| |||+||+|+|||++++.+++.+++..
T Consensus 3 y~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~ 82 (618)
T PRK14951 3 YLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQ 82 (618)
T ss_pred hHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccH
Confidence 3579999999999999999999999999999999999 89999999999999999999998631
Q ss_pred --------cccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccC
Q psy12150 95 --------YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETK 166 (456)
Q Consensus 95 --------~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~ 166 (456)
...+++++|+.+..+++.+++.+......+.. +.++|+||||+|.|+.+.++.|+++||+++.
T Consensus 83 ~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~---------g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~ 153 (618)
T PRK14951 83 ACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQ---------GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPE 153 (618)
T ss_pred HHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCccc---------CCceEEEEEChhhCCHHHHHHHHHhcccCCC
Confidence 11257888888878888898888765444332 2678999999999999999999999999999
Q ss_pred cceEEEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q psy12150 167 STRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246 (456)
Q Consensus 167 ~~~lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~ 246 (456)
.++||++|+++.++...+++||..++|.+++.+++..||+.++.++|+.++++++..|++.++||+|.+++.++++..+.
T Consensus 154 ~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~ 233 (618)
T PRK14951 154 YLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFG 233 (618)
T ss_pred CeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988874
Q ss_pred CCCCCCHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy12150 247 GGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305 (456)
Q Consensus 247 ~~~~It~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~ 305 (456)
++.||.++|+++++....+.+|+++++ ++...++.++++|+..|+++..+++.+-.++
T Consensus 234 -~~~It~~~V~~~Lg~~~~~~i~~LldaL~~~d~~~al~~l~~l~~~G~~~~~il~~l~~~~ 294 (618)
T PRK14951 234 -SGQLQEAAVRQMLGSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLSAASTLEEMAAVL 294 (618)
T ss_pred -CCCcCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 678999999999999999999999998 9999999999999999999998775543333
No 35
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.1e-36 Score=313.57 Aligned_cols=263 Identities=24% Similarity=0.385 Sum_probs=236.9
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc---------------
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY--------------- 95 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~--------------- 95 (456)
-.+|.+||||++|++++|++.+++.|++++..++++| |||+||+|+|||++++.+++.+++...
T Consensus 3 y~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i 82 (709)
T PRK08691 3 YQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQI 82 (709)
T ss_pred chhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHH
Confidence 3679999999999999999999999999999999988 999999999999999999999876321
Q ss_pred ----ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEE
Q psy12150 96 ----RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (456)
Q Consensus 96 ----~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lI 171 (456)
..++++++..+..+.+.+++.+......+..+ +++||||||+|.|+...++.|+++|++++..++||
T Consensus 83 ~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~g---------k~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fI 153 (709)
T PRK08691 83 DAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAG---------KYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (709)
T ss_pred hccCccceEEEeccccCCHHHHHHHHHHHHhhhhhC---------CcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEE
Confidence 12567888888788888888876654443332 67899999999999999999999999999999999
Q ss_pred EEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy12150 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (456)
Q Consensus 172 l~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~I 251 (456)
+++++..++...+++||..+.|.+++.+++..||..+++++|+.++++++..|++.++||+|.+++.|++++.+ +.+.|
T Consensus 154 LaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~-g~g~I 232 (709)
T PRK08691 154 LATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIAL-GSGKV 232 (709)
T ss_pred EEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHh-cCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887 45689
Q ss_pred CHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy12150 252 VNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDI 304 (456)
Q Consensus 252 t~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l 304 (456)
+.++|..+++....+.+|+++++ +++.+++.++++|+..|.++..++..+-.+
T Consensus 233 t~e~V~~lLG~~d~~~If~LldAL~~~d~~~al~~l~~L~~~G~d~~~~l~~L~~~ 288 (709)
T PRK08691 233 AENDVRQMIGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAIL 288 (709)
T ss_pred CHHHHHHHHcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999 999999999999999999998877554333
No 36
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1e-36 Score=310.03 Aligned_cols=258 Identities=22% Similarity=0.358 Sum_probs=232.3
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCc----------------
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM---------------- 94 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~---------------- 94 (456)
-.+|.+||||++|++++||+++++.|.+++..++++| |||+||+|+|||++++.+++.+++..
T Consensus 3 y~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~ 82 (700)
T PRK12323 3 YQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCR 82 (700)
T ss_pred chhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccH
Confidence 4689999999999999999999999999999999999 89999999999999999999998621
Q ss_pred --------cccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccC
Q psy12150 95 --------YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETK 166 (456)
Q Consensus 95 --------~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~ 166 (456)
...++++++..+..+++++++.+......... +++||+||||+|.|+.+.++.|++.||+++.
T Consensus 83 sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~---------gr~KViIIDEah~Ls~~AaNALLKTLEEPP~ 153 (700)
T PRK12323 83 ACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTA---------GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPE 153 (700)
T ss_pred HHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhc---------CCceEEEEEChHhcCHHHHHHHHHhhccCCC
Confidence 01267889988878899999887766544322 2678999999999999999999999999999
Q ss_pred cceEEEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q psy12150 167 STRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246 (456)
Q Consensus 167 ~~~lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~ 246 (456)
+++||++|++..++.++|+|||..+.|.+++.+++.++|.+++.++|+.+++++++.|++.++|++|.+++.++.+..+.
T Consensus 154 ~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia~~ 233 (700)
T PRK12323 154 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYS 233 (700)
T ss_pred CceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877664
Q ss_pred CCCCCCHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHHH
Q psy12150 247 GGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFD 299 (456)
Q Consensus 247 ~~~~It~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~~ 299 (456)
++.|+.++|.++++....+.++++++. ++...++.+++.+...|+++..++.
T Consensus 234 -~~~It~~~V~~~LG~~d~~~i~~Ll~aL~~~d~~~~l~l~~~l~~~G~d~~~~L~ 288 (700)
T PRK12323 234 -AGNVSEEAVRGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLSFAGALQ 288 (700)
T ss_pred -cCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 457999999999999998889988888 8999999999999999999755443
No 37
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3e-37 Score=314.99 Aligned_cols=270 Identities=22% Similarity=0.395 Sum_probs=241.9
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc---------------
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY--------------- 95 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~--------------- 95 (456)
..+|.+||||++|++++||+.+++.|.+++..++.+| |||+||+|+|||++|+.+++.+.+..+
T Consensus 3 ~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i 82 (605)
T PRK05896 3 EITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESI 82 (605)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 3689999999999999999999999999999999888 999999999999999999999875322
Q ss_pred ----ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEE
Q psy12150 96 ----RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (456)
Q Consensus 96 ----~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lI 171 (456)
..+++++++....+.+.+++.+..+...+..+ +++|+||||+|.|+.++++.|+++|++|++.+++|
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~---------~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfI 153 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTF---------KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFI 153 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchhhC---------CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEE
Confidence 13567788776678888888777666554432 67899999999999999999999999999999999
Q ss_pred EEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy12150 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (456)
Q Consensus 172 l~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~I 251 (456)
++++.+.++.+++++||..++|.+++.+++..|+..++.++|+.+++++++.+++.++||+|.+++.+++++.|.++ .|
T Consensus 154 L~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~~-~I 232 (605)
T PRK05896 154 FATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNS-EI 232 (605)
T ss_pred EECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988653 49
Q ss_pred CHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHHhcC
Q psy12150 252 VNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF----DQFHDIVMLASSL 311 (456)
Q Consensus 252 t~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~~~~~~~ 311 (456)
+.++|.++++....+.++.++++ ++..+++.++++|+..|++|..++ ..||++++.....
T Consensus 233 t~e~V~ellg~~~~~~Vf~Ll~AI~~kd~~~al~~l~~Ll~~ge~~~~il~~L~~~~RDlL~~k~~~ 299 (605)
T PRK05896 233 DIEDINKTFGLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLIDLLVYQKTK 299 (605)
T ss_pred CHHHHHHHhccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999999999999988 799999999999999999998866 5678888765533
No 38
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.4e-36 Score=306.72 Aligned_cols=262 Identities=21% Similarity=0.364 Sum_probs=236.7
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc---------------
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY--------------- 95 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~--------------- 95 (456)
-.||.+||||.+|++++|++.+++.|..++..++.+| |||+||+|+|||++|+.+++.+.+...
T Consensus 3 y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i 82 (546)
T PRK14957 3 YQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAI 82 (546)
T ss_pred chhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 4689999999999999999999999999999999988 999999999999999999999875211
Q ss_pred ----ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEE
Q psy12150 96 ----RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (456)
Q Consensus 96 ----~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lI 171 (456)
..+++++++....+.+.+++.+..+...+..+ +++|+||||+|.|+.+.++.|+++||++++.++||
T Consensus 83 ~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g---------~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fI 153 (546)
T PRK14957 83 NNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQG---------RYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFI 153 (546)
T ss_pred hcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcC---------CcEEEEEechhhccHHHHHHHHHHHhcCCCCceEE
Confidence 12567788766678888888877766554433 77899999999999999999999999999999999
Q ss_pred EEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy12150 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (456)
Q Consensus 172 l~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~I 251 (456)
++|++..++.+++++||..++|.+++.+++..|+..+++++|+.+++++++.|++.++||+|.+++.|++++.|.+ +.|
T Consensus 154 L~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~-~~I 232 (546)
T PRK14957 154 LATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCG-GEL 232 (546)
T ss_pred EEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CCC
Confidence 9999999999899999999999999999999999999999999999999999999999999999999999998865 689
Q ss_pred CHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHHHHHHH
Q psy12150 252 VNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHD 303 (456)
Q Consensus 252 t~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~~q~~~ 303 (456)
+.++|+++++....+.+|+++++ ++..+++..++++...+.++..++..+..
T Consensus 233 t~~~V~~~l~~~~~~~v~~ll~Al~~~d~~~~l~~~~~l~~~~~~~~~~l~~l~~ 287 (546)
T PRK14957 233 KQAQIKQMLGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSADAVLDRIAE 287 (546)
T ss_pred CHHHHHHHHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999988999999999 79999999999999999999888876653
No 39
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.8e-36 Score=311.28 Aligned_cols=330 Identities=20% Similarity=0.272 Sum_probs=272.0
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc---------------
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY--------------- 95 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~--------------- 95 (456)
-.+|.+||||++|++++||+++++.|.+.+..++++| |||+||+|+|||++++.+++.+++...
T Consensus 3 y~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i 82 (647)
T PRK07994 3 YQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREI 82 (647)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHH
Confidence 3689999999999999999999999999999999999 899999999999999999999987321
Q ss_pred ----ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEE
Q psy12150 96 ----RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (456)
Q Consensus 96 ----~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lI 171 (456)
..+++++++.+..+++.+++.+..+...+.. +.++|+||||+|.|+...++.|+++||+|+.+++||
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~---------g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FI 153 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPAR---------GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFL 153 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhc---------CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEE
Confidence 1256788887667888888877766544432 277899999999999999999999999999999999
Q ss_pred EEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy12150 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (456)
Q Consensus 172 l~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~I 251 (456)
++|+++.++.++|+|||..++|.+++.+++..+|..++.++++.++++++..|+..++|++|.+++.++.+..+ +++.|
T Consensus 154 L~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~-~~~~i 232 (647)
T PRK07994 154 LATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIAS-GNGQV 232 (647)
T ss_pred EecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887765 45679
Q ss_pred CHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12150 252 VNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF----DQFHDIVMLASSLSDKQKALFKALET 324 (456)
Q Consensus 252 t~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~~~~~~~~~~~~~l~~~~~~ 324 (456)
+.++|..+++....+.+++++++ ++...++.++.+|+..|.++..++ ..||++++....
T Consensus 233 t~~~v~~~lg~~d~~~~~~ll~al~~~d~~~~l~~~~~l~~~g~d~~~~L~~l~~~lrdil~~q~~-------------- 298 (647)
T PRK07994 233 TTDDVSAMLGTLDDDQALSLLEALVEGDGERVMALINQLAERGPDWEGLLVELLELLHRIAMAQLL-------------- 298 (647)
T ss_pred CHHHHHHHHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc--------------
Confidence 99999999998877888888887 789999999999999999987655 455555511100
Q ss_pred HHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy12150 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHD 404 (456)
Q Consensus 325 ~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~ 404 (456)
.. .......|....+..
T Consensus 299 -------------------~~--------------------------------------------~~~~~~~d~~~~l~~ 315 (647)
T PRK07994 299 -------------------PA--------------------------------------------ALDNDMADIELRLRE 315 (647)
T ss_pred -------------------cc--------------------------------------------hhcccchhHHHHHHH
Confidence 00 000011122223333
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHH
Q psy12150 405 IVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~ 451 (456)
... .++......+++.+-+...+|....+..+.+..++..+..+
T Consensus 316 la~---~~s~~~l~~~~q~~~~~~~~L~~n~n~~l~lE~~llr~~~~ 359 (647)
T PRK07994 316 LAR---TLPPEDVQLYYQTLLIGRKDLPLAPDRRMGVEMTLLRMLAF 359 (647)
T ss_pred HHH---hCCHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhc
Confidence 333 46777777788888888899999999999988888877654
No 40
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7.4e-36 Score=311.56 Aligned_cols=331 Identities=23% Similarity=0.361 Sum_probs=277.6
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc---------------
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY--------------- 95 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~--------------- 95 (456)
-.||.++|||++|++++|++.++..|.+++..++.++ ||||||+|+|||++|+++++.+.+...
T Consensus 3 ~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~ 82 (620)
T PRK14948 3 YEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCR 82 (620)
T ss_pred cchHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHH
Confidence 4799999999999999999999999999999998766 999999999999999999999976321
Q ss_pred ------ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcce
Q psy12150 96 ------RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTR 169 (456)
Q Consensus 96 ------~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~ 169 (456)
..++++++.....+++.+++.+......+.. ++++||||||+|.|+.+.++.|+++||+++..++
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~---------~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tv 153 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQ---------ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVV 153 (620)
T ss_pred HHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhc---------CCceEEEEECccccCHHHHHHHHHHHhcCCcCeE
Confidence 1246677776667788888888665544433 2678999999999999999999999999999999
Q ss_pred EEEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCC
Q psy12150 170 FCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249 (456)
Q Consensus 170 lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~ 249 (456)
||++++++.++.++|++||..++|.+++.+++..++..++.++|+.++++++..|++.++||+|.++++|++++.+. +
T Consensus 154 fIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~--~ 231 (620)
T PRK14948 154 FVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLP--G 231 (620)
T ss_pred EEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcc--C
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999988874 4
Q ss_pred CCCHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHHhcCCHHHHHHHHHH
Q psy12150 250 GIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF----DQFHDIVMLASSLSDKQKALFKAL 322 (456)
Q Consensus 250 ~It~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~~~~~~~~~~~~~l~~~~ 322 (456)
.||.++|.++++...++.+++++++ ++..+++.++++|+..|++|..++ ++||+++......+.
T Consensus 232 ~It~e~V~~lvg~~~e~~i~~Ll~ai~~~d~~~al~~~~~Ll~~g~~p~~iL~~L~~~~RDLL~~K~~~~~--------- 302 (620)
T PRK14948 232 PITPEAVWDLLGAVPEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAKTAPNR--------- 302 (620)
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccc---------
Confidence 7999999999999999999999888 899999999999999999998866 666666621110000
Q ss_pred HHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHH
Q psy12150 323 ETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQF 402 (456)
Q Consensus 323 ~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l 402 (456)
..+. +.. .+....+
T Consensus 303 ---------------------------------------------------------------~~l~--~i~-~d~~~~l 316 (620)
T PRK14948 303 ---------------------------------------------------------------PDLV--AVS-QQTWDEL 316 (620)
T ss_pred ---------------------------------------------------------------hhhh--hcC-HHHHHHH
Confidence 0000 001 1222333
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHH
Q psy12150 403 HDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~ 451 (456)
..... .++...+..++..|.++|+.++.+.+..+-+..++..+...
T Consensus 317 ~~~A~---~~s~~~L~~~i~~L~eae~~LK~n~nprL~LE~lLl~l~~~ 362 (620)
T PRK14948 317 CKLAK---QINLERILQWQQHLKGSEYQLKNSTQPRLWLEVTLLGLLPS 362 (620)
T ss_pred HHHHh---hCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhhcc
Confidence 33333 67899999999999999999999999999999999888764
No 41
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=9.5e-36 Score=306.79 Aligned_cols=260 Identities=24% Similarity=0.384 Sum_probs=233.1
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc---------------
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY--------------- 95 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~--------------- 95 (456)
-.+|.+||||++|++++|++++++.|.+++..++.+| |||+||+|+|||++|+.+++.++++..
T Consensus 3 ~~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i 82 (527)
T PRK14969 3 YQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEI 82 (527)
T ss_pred cHHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 3579999999999999999999999999999999999 899999999999999999999976321
Q ss_pred ----ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEE
Q psy12150 96 ----RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (456)
Q Consensus 96 ----~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lI 171 (456)
..++++++++...+.+.+++.+......+.. ++++|+||||+|.|+.+.++.|+++|++++++++||
T Consensus 83 ~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~---------~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fI 153 (527)
T PRK14969 83 DSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTR---------GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (527)
T ss_pred hcCCCCceeEeeccccCCHHHHHHHHHHHhhCccc---------CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 1256778877667888888777665433322 378899999999999999999999999999999999
Q ss_pred EEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy12150 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (456)
Q Consensus 172 l~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~I 251 (456)
++++++.++.+.+++||..++|.+++.+++..++..+++++|+.++++++..|++.++||+|.+++.++++..+ +++.|
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~-~~~~I 232 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAY-GGGTV 232 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cCCCc
Confidence 99999989988999999999999999999999999999999999999999999999999999999999999888 57789
Q ss_pred CHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHHHHH
Q psy12150 252 VNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQF 301 (456)
Q Consensus 252 t~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~~q~ 301 (456)
+.++|.++++...++.+|+++++ ++..+++.++++|...++++..++..+
T Consensus 233 ~~~~v~~~~~~~~~~~i~~ll~al~~~~~~~~l~~~~~l~~~~~~~~~~l~~l 285 (527)
T PRK14969 233 NESEVRAMLGAIDQDYLFALLEALLAQDGAALLAIADAMEERSLSFDAALQDL 285 (527)
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999998 789999999999999999987766443
No 42
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-35 Score=298.41 Aligned_cols=258 Identities=26% Similarity=0.419 Sum_probs=239.5
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCc-----------------
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM----------------- 94 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~----------------- 94 (456)
.++..||||++|++++||+.++..|...+..++..| |+|+||.|+||||+++.+++.+++..
T Consensus 4 q~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 4 QVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEIN 83 (515)
T ss_pred HHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhh
Confidence 467899999999999999999999999999999999 99999999999999999999998753
Q ss_pred --cccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEE
Q psy12150 95 --YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172 (456)
Q Consensus 95 --~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl 172 (456)
...+++|+|+....+++++++..+.....+.. +.+||.||||+|.|+...+++|++.+|+||.+++|||
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~---------~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIl 154 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSE---------GRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFIL 154 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCcc---------ccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEE
Confidence 12467889999999999999988876555443 3789999999999999999999999999999999999
Q ss_pred EecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCC
Q psy12150 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252 (456)
Q Consensus 173 ~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It 252 (456)
+|+++.|+...+.|||+.++|+.++.+++...|..++.++++.++++++..+++.++|.+|.+++.|+.+..+.+ +.||
T Consensus 155 ATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~-~~It 233 (515)
T COG2812 155 ATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGE-GEIT 233 (515)
T ss_pred ecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccC-Cccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998765 7899
Q ss_pred HHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHHHH
Q psy12150 253 NEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQ 300 (456)
Q Consensus 253 ~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~~q 300 (456)
.+.|..+++....+.+..++.+ +|..+++..+++++..|.+|..++..
T Consensus 234 ~~~v~~~lG~~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~G~~~~~~l~d 284 (515)
T COG2812 234 LESVRDMLGLTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAFLED 284 (515)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 9999999999999999999998 99999999999999999999886643
No 43
>PRK04132 replication factor C small subunit; Provisional
Probab=100.00 E-value=2.4e-33 Score=297.01 Aligned_cols=275 Identities=37% Similarity=0.589 Sum_probs=244.0
Q ss_pred EEEEC--CCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCC
Q psy12150 69 FLFYG--PPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146 (456)
Q Consensus 69 ~Ll~G--~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~ 146 (456)
.+..| |.+.||||+|+++++++.++.+..+++++|+++.++.+.+++.+..+....... .++++||||||+
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~-------~~~~KVvIIDEa 639 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIG-------GASFKIIFLDEA 639 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcC-------CCCCEEEEEECc
Confidence 67778 999999999999999998877778999999999999999999998887554321 025689999999
Q ss_pred CCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy12150 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVE 226 (456)
Q Consensus 147 d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~ 226 (456)
|.|+.++|++|+++||+|+.++.||++||++.++.++|+|||..+.|.+++.+++...|..+|+++|+.++++++..|+.
T Consensus 640 D~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~ 719 (846)
T PRK04132 640 DALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILY 719 (846)
T ss_pred ccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCCHHHHHHHHcccchHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q psy12150 227 TSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306 (456)
Q Consensus 227 ~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~~~~~~i~~l~~~~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~~ 306 (456)
.++||+|.+++.||.++.. .+.||.++|..+.+...++.++++++. +
T Consensus 720 ~s~GDlR~AIn~Lq~~~~~--~~~It~~~V~~~~~~~~~~~I~~il~~-----------------------------~-- 766 (846)
T PRK04132 720 IAEGDMRRAINILQAAAAL--DDKITDENVFLVASRARPEDIREMMLL-----------------------------A-- 766 (846)
T ss_pred HcCCCHHHHHHHHHHHHHh--cCCCCHHHHHHHhCCCCHHHHHHHHHH-----------------------------H--
Confidence 9999999999999987753 357999999999888888777777664 0
Q ss_pred HHhcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHH
Q psy12150 307 LASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIE 386 (456)
Q Consensus 307 ~~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
..+++..+...+.
T Consensus 767 -------------------------------------------------------------------l~~~~~~ar~~l~ 779 (846)
T PRK04132 767 -------------------------------------------------------------------LKGNFLKAREKLR 779 (846)
T ss_pred -------------------------------------------------------------------hcCcHHHHHHHHH
Confidence 0234555555677
Q ss_pred HHH-HcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHH
Q psy12150 387 DLI-LEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 387 ~l~-~~g~s~~di~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~ 451 (456)
.++ ..|++..+++.++++.+... ++++..+.+++..+|++|+|++.|+++.+||.++++.|+.+
T Consensus 780 ell~~~G~~~~~iL~~l~~~l~~~-~i~~~~k~~ll~~lae~e~rl~~G~n~~iqL~a~la~~~~~ 844 (846)
T PRK04132 780 EILLKQGLSGEDVLVQMHREVFNL-PIDEPKKVELADKIGEYNFRLVEGANEMIQLEALLAQFTLM 844 (846)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhHHHHCCCCHHHHHHHHHHHHHhh
Confidence 765 89999999999999999875 78999999999999999999999999999999999999754
No 44
>KOG2035|consensus
Probab=100.00 E-value=5.9e-32 Score=244.23 Aligned_cols=318 Identities=27% Similarity=0.453 Sum_probs=253.0
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCcc-----------------
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY----------------- 95 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~----------------- 95 (456)
+.|.++|||++++.+.++++....++.....+.+||+++|||+|+||.|.+.++.+++.+...
T Consensus 1 ~LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kk 80 (351)
T KOG2035|consen 1 MLWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKK 80 (351)
T ss_pred CcchhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCce
Confidence 479999999999999999999999999998889999999999999999999999999986221
Q ss_pred -------ccceEEeeCCCCcChH--HHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccC
Q psy12150 96 -------RERILELNASDDRGIQ--VIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETK 166 (456)
Q Consensus 96 -------~~~~~e~n~~~~~~~~--~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~ 166 (456)
...++|++.+|....+ .+++.+++.++......... .++++|+|.|+|.|+.++|.+|++.||++..
T Consensus 81 lEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~q----r~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 81 LEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQ----RPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred EEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccc----cceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 1245678888755443 47788888887754432211 2789999999999999999999999999999
Q ss_pred cceEEEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q psy12150 167 STRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246 (456)
Q Consensus 167 ~~~lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~ 246 (456)
++++|++||...++.++++|||..+..+.|+++++...+..+++++|..++.+.+..|++.++||+|+++-.|+.++...
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n 236 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNN 236 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876532
Q ss_pred CCCCCCHHHHHHHhCCCCHHHHHHHHcccchHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy12150 247 GGEGIVNEDVLEVTGVIPKPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLV 326 (456)
Q Consensus 247 ~~~~It~~~v~~~~~~~~~~~i~~l~~~~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~~~~~~~~~~~~~l~~~~~~~~ 326 (456)
..-+..- ..+....++ ....-+...+....+|..++
T Consensus 237 --~~~~a~~--~~i~~~dWe------------~~i~e~a~~i~~eQs~~~L~---------------------------- 272 (351)
T KOG2035|consen 237 --EPFTANS--QVIPKPDWE------------IYIQEIARVILKEQSPAKLL---------------------------- 272 (351)
T ss_pred --ccccccC--CCCCCccHH------------HHHHHHHHHHHhccCHHHHH----------------------------
Confidence 1111110 111111111 11111111222222232221
Q ss_pred hcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy12150 327 ETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIV 406 (456)
Q Consensus 327 ~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~~~ 406 (456)
+....+.+|+.++..+.-|+++|...+
T Consensus 273 -----------------------------------------------------~vR~~LYeLL~~CIPP~~Ilk~Ll~~L 299 (351)
T KOG2035|consen 273 -----------------------------------------------------EVRGRLYELLSHCIPPNTILKELLEEL 299 (351)
T ss_pred -----------------------------------------------------HHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 122246678899999999999996666
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHHhc
Q psy12150 407 MSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 453 (456)
Q Consensus 407 ~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~~~ 453 (456)
.. ..+...+.++++.-|..|+||.-|.-.-+.|.++||.|+.+|.
T Consensus 300 l~--~~d~~~k~~~~~~Aa~yEhRl~lG~KaIfHLEaFVA~fM~iy~ 344 (351)
T KOG2035|consen 300 LL--KCDTQLKLEVIQHAAKYEHRLRLGQKAIFHLEAFVAKFMCIYK 344 (351)
T ss_pred Hh--cCCchhHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHH
Confidence 54 6788999999999999999999999999999999999999875
No 45
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=100.00 E-value=1.7e-31 Score=261.67 Aligned_cols=299 Identities=27% Similarity=0.374 Sum_probs=238.0
Q ss_pred CCCCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC
Q psy12150 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (456)
Q Consensus 29 ~~~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~ 107 (456)
.....+|.+||||++|++++|++++.+.+..+++.++.++ ++++||||+|||++++++++.+.. ++.++|+++
T Consensus 5 ~~~~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~- 78 (316)
T PHA02544 5 NPNEFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD- 78 (316)
T ss_pred CCCCCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-
Confidence 4567899999999999999999999999999999999888 677999999999999999998743 567888877
Q ss_pred cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCc-cHHHHHHHHHHHHhccCcceEEEEecCcccccccccC
Q psy12150 108 RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM-THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186 (456)
Q Consensus 108 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l-~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~ 186 (456)
...+.+++.+..+....... +++++|||||+|.+ ..+.++.|..++++++..+.||++++...++.+++++
T Consensus 79 ~~~~~i~~~l~~~~~~~~~~--------~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 79 CRIDFVRNRLTRFASTVSLT--------GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred ccHHHHHHHHHHHHHhhccc--------CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh
Confidence 33555666555554432211 25679999999999 6677888888999998899999999999999999999
Q ss_pred CceEEEecCCCHHHHHHHHH-------HHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHH
Q psy12150 187 RCSKFRFKPLAENTMLTRLQ-------YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 259 (456)
Q Consensus 187 r~~~i~f~~~~~~el~~~l~-------~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~ 259 (456)
||..+.|+.|+.++...++. .++..+|+.++++++..+++.+.||+|.+++.++.++. ++.|+.+++..+
T Consensus 151 R~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~~---~~~i~~~~l~~~ 227 (316)
T PHA02544 151 RCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAS---TGKIDAGILSEV 227 (316)
T ss_pred hceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHc---cCCCCHHHHHHh
Confidence 99999999999988775543 44566899999999999999999999999999997653 357888887664
Q ss_pred hCCCCHHHHHHHHcccchHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHHHHHHH
Q psy12150 260 TGVIPKPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITC 339 (456)
Q Consensus 260 ~~~~~~~~i~~l~~~~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~~~ 339 (456)
. ...+++++++
T Consensus 228 ~----~~~~~~l~~~----------------------------------------------------------------- 238 (316)
T PHA02544 228 T----NSDIDDVVEA----------------------------------------------------------------- 238 (316)
T ss_pred h----HHHHHHHHHH-----------------------------------------------------------------
Confidence 4 3444555444
Q ss_pred HhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy12150 340 LQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKAL 419 (456)
Q Consensus 340 lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~~~~~~~~~~~~~~~~ 419 (456)
++ ..+...... + ....|.+..+++..+++.+.. .+....+.+
T Consensus 239 l~---------------------------------~~d~~~~~~-~--~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~ 280 (316)
T PHA02544 239 LK---------------------------------AKDFKAVRA-L--APNYANDYASFVGKLYDELYP--QVTPPSIIR 280 (316)
T ss_pred HH---------------------------------cCCHHHHHH-H--HHHhccCHHHHHHHHHHHHHH--hCCHHHHHH
Confidence 00 011111111 1 123377888999999888775 467888999
Q ss_pred HHHHHHHHHhhhhcCCChhHHHHHHHHHHHHH
Q psy12150 420 ILEKLAECNARLQDGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 420 ~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~ 451 (456)
+++.+++.+.++..|.++.+|+.++++.++.-
T Consensus 281 ~~~~l~~~~~~~~~~~~~~l~le~~l~~~~~~ 312 (316)
T PHA02544 281 LIEIIGENNQYHGFAADQEIHLLYLLTQLMLE 312 (316)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998754
No 46
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.9e-31 Score=250.35 Aligned_cols=254 Identities=24% Similarity=0.312 Sum_probs=212.6
Q ss_pred CcchhccCCCCcccccccHHHH---HHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcC
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVV---SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG 109 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~---~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~ 109 (456)
.|+.++.||+++++++||++.+ ..|.+.++.+.+++++|||||||||||+++.++..... .+..+|+.. .+
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~-----~f~~~sAv~-~g 85 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNA-----AFEALSAVT-SG 85 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCC-----ceEEecccc-cc
Confidence 6999999999999999999998 67899999999999999999999999999999998654 677888775 67
Q ss_pred hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEe--cCcccccccccCC
Q psy12150 110 IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC--NYVSCIIQPLTSR 187 (456)
Q Consensus 110 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~--~~~~kl~~~l~~r 187 (456)
+.++++.++........+ .+.|+||||+|++++.+|+.|+..+|+.. +++|-+| |+...+.++|+||
T Consensus 86 vkdlr~i~e~a~~~~~~g---------r~tiLflDEIHRfnK~QQD~lLp~vE~G~--iilIGATTENPsF~ln~ALlSR 154 (436)
T COG2256 86 VKDLREIIEEARKNRLLG---------RRTILFLDEIHRFNKAQQDALLPHVENGT--IILIGATTENPSFELNPALLSR 154 (436)
T ss_pred HHHHHHHHHHHHHHHhcC---------CceEEEEehhhhcChhhhhhhhhhhcCCe--EEEEeccCCCCCeeecHHHhhh
Confidence 888888888776554332 45599999999999999999999999753 5555554 3457889999999
Q ss_pred ceEEEecCCCHHHHHHHHHHHHHH--cCCC-----CCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhC-CCCCCHHHHHHH
Q psy12150 188 CSKFRFKPLAENTMLTRLQYICEQ--ESVM-----CDFKALETLVETSGGDMRRAITCLQSCARLKG-GEGIVNEDVLEV 259 (456)
Q Consensus 188 ~~~i~f~~~~~~el~~~l~~~~~~--~~~~-----i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~-~~~It~~~v~~~ 259 (456)
|.++.|+|++.+++...+++.+.. .|+. +++++++.|+..++||.|.++|.|+.+...+. ++.++.+++.++
T Consensus 155 ~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~ 234 (436)
T COG2256 155 ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEI 234 (436)
T ss_pred hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHH
Confidence 999999999999999999985443 4444 78999999999999999999999999888763 335568999988
Q ss_pred hCCCC------HHHHHHHHcc-------cchHHHHHHHHHHHHhccCHHHHHHHHHH
Q psy12150 260 TGVIP------KPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHD 303 (456)
Q Consensus 260 ~~~~~------~~~i~~l~~~-------~~~~~a~~~~~~l~~~~~~~~~i~~q~~~ 303 (456)
+.... .+...+++.+ .+.+.|+.|+..|++.|++|.-|.|.+-.
T Consensus 235 l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~ 291 (436)
T COG2256 235 LQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVR 291 (436)
T ss_pred HhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 87532 2455566555 78899999999999999999998875533
No 47
>PRK04195 replication factor C large subunit; Provisional
Probab=99.97 E-value=4.8e-29 Score=256.71 Aligned_cols=251 Identities=30% Similarity=0.415 Sum_probs=204.3
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhcC---C-CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGA---D-LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~---~-~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~ 107 (456)
.++|++||+|+++++++|++..++.+..|+..+ . .+++|||||||+|||++++++++.+. ..++++|+++.
T Consensus 1 ~~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~-----~~~ielnasd~ 75 (482)
T PRK04195 1 MMPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG-----WEVIELNASDQ 75 (482)
T ss_pred CCCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC-----CCEEEEccccc
Confidence 369999999999999999999999999998743 3 44599999999999999999999974 36899999987
Q ss_pred cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH----HHHHHHHHHHHhccCcceEEEEecCcccccc-
Q psy12150 108 RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH----AAQAALRRTMEKETKSTRFCLICNYVSCIIQ- 182 (456)
Q Consensus 108 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~----~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~- 182 (456)
+..+.+...+.......... + .++++|||||+|.++. ...+.|+++++.. ...+|+++|++..+..
T Consensus 76 r~~~~i~~~i~~~~~~~sl~----~---~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 76 RTADVIERVAGEAATSGSLF----G---ARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSLR 146 (482)
T ss_pred ccHHHHHHHHHHhhccCccc----C---CCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccchh
Confidence 77777777666554332211 0 1567999999999976 4578888988854 3457778888777665
Q ss_pred cccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCC
Q psy12150 183 PLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262 (456)
Q Consensus 183 ~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~ 262 (456)
.++++|..++|++++..++..+|..++..+|+.+++++++.|++.++||+|.+++.|+.++. +.+.|+.+++..++..
T Consensus 147 ~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~--~~~~it~~~v~~~~~~ 224 (482)
T PRK04195 147 ELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAE--GYGKLTLEDVKTLGRR 224 (482)
T ss_pred hHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhc--CCCCCcHHHHHHhhcC
Confidence 89999999999999999999999999999999999999999999999999999999998432 4568999999999877
Q ss_pred CCHHHHHHHHcc----cchHHHHHHHHHHHHhccCHHHHHHHH
Q psy12150 263 IPKPWIEKLLKV----DSFQVLEKYIEDLILEAYSATQLFDQF 301 (456)
Q Consensus 263 ~~~~~i~~l~~~----~~~~~a~~~~~~l~~~~~~~~~i~~q~ 301 (456)
....++|++++. ++++++...+.+ ...+|-.++.-+
T Consensus 225 d~~~~if~~l~~i~~~k~~~~a~~~~~~---~~~~~~~i~~~l 264 (482)
T PRK04195 225 DREESIFDALDAVFKARNADQALEASYD---VDEDPDDLIEWI 264 (482)
T ss_pred CCCCCHHHHHHHHHCCCCHHHHHHHHHc---ccCCHHHHHHHH
Confidence 777888888886 667777665544 455665555433
No 48
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.97 E-value=8.5e-29 Score=250.19 Aligned_cols=253 Identities=24% Similarity=0.309 Sum_probs=205.7
Q ss_pred cchhccCCCCcccccccHHHHHH---HHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcCh
Q psy12150 34 PWVEKYRPKTIDDVIEQQEVVSV---LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI 110 (456)
Q Consensus 34 ~w~eky~P~~~~~ivg~~~~~~~---l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~ 110 (456)
||+++|||+++++++|+++.+.. +.+++.++..++++|+||||||||++++.+++.+.. .++.+++.. .+.
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~-----~~~~l~a~~-~~~ 74 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDA-----PFEALSAVT-SGV 74 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccc-ccH
Confidence 89999999999999999999766 999999998888999999999999999999998643 567777765 345
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEec--CcccccccccCCc
Q psy12150 111 QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN--YVSCIIQPLTSRC 188 (456)
Q Consensus 111 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~--~~~kl~~~l~~r~ 188 (456)
..+++.+..+...... ..+++|||||+|.++...++.|+..+++. .+++|.+++ ....+.+++.+||
T Consensus 75 ~~ir~ii~~~~~~~~~---------g~~~vL~IDEi~~l~~~~q~~LL~~le~~--~iilI~att~n~~~~l~~aL~SR~ 143 (413)
T PRK13342 75 KDLREVIEEARQRRSA---------GRRTILFIDEIHRFNKAQQDALLPHVEDG--TITLIGATTENPSFEVNPALLSRA 143 (413)
T ss_pred HHHHHHHHHHHHhhhc---------CCceEEEEechhhhCHHHHHHHHHHhhcC--cEEEEEeCCCChhhhccHHHhccc
Confidence 5566655554332211 14569999999999999999999999863 344554443 3457889999999
Q ss_pred eEEEecCCCHHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCC-
Q psy12150 189 SKFRFKPLAENTMLTRLQYICEQE--SV-MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP- 264 (456)
Q Consensus 189 ~~i~f~~~~~~el~~~l~~~~~~~--~~-~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~~~- 264 (456)
..+.|.+++.+++..++...+... +. .+++++++.|++.++||+|.+++.++.++.. ++.|+.+++.+++....
T Consensus 144 ~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~--~~~It~~~v~~~~~~~~~ 221 (413)
T PRK13342 144 QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALG--VDSITLELLEEALQKRAA 221 (413)
T ss_pred eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHc--cCCCCHHHHHHHHhhhhh
Confidence 999999999999999999988753 44 8999999999999999999999999998775 56899999999887421
Q ss_pred -----HHHHHHHH----cc---cchHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy12150 265 -----KPWIEKLL----KV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305 (456)
Q Consensus 265 -----~~~i~~l~----~~---~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~ 305 (456)
.+..++++ +. .+.+.++.++..|+..|++|..|.|++-.+.
T Consensus 222 ~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 222 RYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred ccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 12333333 32 7889999999999999999999999876666
No 49
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.96 E-value=5.1e-28 Score=255.87 Aligned_cols=259 Identities=19% Similarity=0.277 Sum_probs=206.5
Q ss_pred CCCcchhccCCCCcccccccHHHH---HHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC
Q psy12150 31 KPVPWVEKYRPKTIDDVIEQQEVV---SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (456)
Q Consensus 31 ~~~~w~eky~P~~~~~ivg~~~~~---~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~ 107 (456)
...||.++|||++|++++|+++.+ ..+++.+..++.++++||||||||||++++++++.+.. .++.+|+..
T Consensus 14 ~~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~-----~f~~lna~~- 87 (725)
T PRK13341 14 SEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRA-----HFSSLNAVL- 87 (725)
T ss_pred ccCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcC-----cceeehhhh-
Confidence 456999999999999999999998 46888999999989999999999999999999998643 456677664
Q ss_pred cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEec--Cccccccccc
Q psy12150 108 RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN--YVSCIIQPLT 185 (456)
Q Consensus 108 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~--~~~kl~~~l~ 185 (456)
.+...+++.+.......... ..+.++||||+|.++...++.|+.++++. .+++|.+++ ....+.+++.
T Consensus 88 ~~i~dir~~i~~a~~~l~~~--------~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g--~IiLI~aTTenp~~~l~~aL~ 157 (725)
T PRK13341 88 AGVKDLRAEVDRAKERLERH--------GKRTILFIDEVHRFNKAQQDALLPWVENG--TITLIGATTENPYFEVNKALV 157 (725)
T ss_pred hhhHHHHHHHHHHHHHhhhc--------CCceEEEEeChhhCCHHHHHHHHHHhcCc--eEEEEEecCCChHhhhhhHhh
Confidence 34445555544432221111 13459999999999999999999999863 344554443 2356788999
Q ss_pred CCceEEEecCCCHHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhC---CC--CCCH
Q psy12150 186 SRCSKFRFKPLAENTMLTRLQYICE-------QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG---GE--GIVN 253 (456)
Q Consensus 186 ~r~~~i~f~~~~~~el~~~l~~~~~-------~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~---~~--~It~ 253 (456)
+||..+.|++++.+++..+++..+. .+++.+++++++.|++.++||+|.+++.|+.++.... .+ .||.
T Consensus 158 SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~~~~~~~~~i~It~ 237 (725)
T PRK13341 158 SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGLIDITL 237 (725)
T ss_pred ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccCCCCceeccH
Confidence 9999999999999999999999887 4678899999999999999999999999999775431 11 3787
Q ss_pred HHHHHHhC----------CCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy12150 254 EDVLEVTG----------VIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305 (456)
Q Consensus 254 ~~v~~~~~----------~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~ 305 (456)
+.+.+++. ....+.+..+++. +|.+.|+.++..|+..|++|..|+|++-.+.
T Consensus 238 ~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~a 302 (725)
T PRK13341 238 AIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAA 302 (725)
T ss_pred HHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88777653 3455777777777 8999999999999999999999998765555
No 50
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=3.1e-26 Score=223.62 Aligned_cols=298 Identities=15% Similarity=0.250 Sum_probs=226.5
Q ss_pred CcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc---ccceEEeeC--CCCcChHHHHHH
Q psy12150 43 TIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY---RERILELNA--SDDRGIQVIRDK 116 (456)
Q Consensus 43 ~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~---~~~~~e~n~--~~~~~~~~i~~~ 116 (456)
+|++++|++.+++.+.++++.++.+| |+|+||+|+|||++|+.+++.+.+... ..++.++.. ....+.+.+++.
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~ 81 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNI 81 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHH
Confidence 58999999999999999999999999 999999999999999999999876321 123444443 223456778777
Q ss_pred HHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccCCceEEEecCC
Q psy12150 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPL 196 (456)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~r~~~i~f~~~ 196 (456)
+..+...+.. +++||+|||++|.|+.+++++|+++||+|+++++||++++++.++.++++|||..++|.++
T Consensus 82 ~~~~~~~p~~---------~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~ 152 (313)
T PRK05564 82 IEEVNKKPYE---------GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRL 152 (313)
T ss_pred HHHHhcCccc---------CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCc
Confidence 7665544443 3788999999999999999999999999999999999999899999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCCHHHHHHHHcc--
Q psy12150 197 AENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV-- 274 (456)
Q Consensus 197 ~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~~~~~~i~~l~~~-- 274 (456)
+++++..|+...+. .+++++++.++..++|++..+...+..-. ... ..+.++++++.
T Consensus 153 ~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~~~~~---------~~~--------~~~~~~~~~~~l~ 211 (313)
T PRK05564 153 SKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFIEDDS---------LKN--------IRNMSLEILKDIK 211 (313)
T ss_pred CHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHhcccH---------HHH--------HHHHHHHHHHHHH
Confidence 99999999986543 57888899999999999888776552211 111 12355666654
Q ss_pred -cchHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhhcCC
Q psy12150 275 -DSFQVLEKYIEDLILEAYSATQLF----DQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGG 349 (456)
Q Consensus 275 -~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~ 349 (456)
++...++.+...+...++++..++ ++||+++..... .
T Consensus 212 ~~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rdll~~k~~---------------------------------~----- 253 (313)
T PRK05564 212 KSNINILLKYENFLIKYKENWEEILTCILSYIRDSLLYKET---------------------------------G----- 253 (313)
T ss_pred cCCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhcc---------------------------------C-----
Confidence 677788888999988888887755 566666511100 0
Q ss_pred CCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy12150 350 EGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 429 (456)
Q Consensus 350 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 429 (456)
. . ..++ ..|....+..... .++......+++.+.++++
T Consensus 254 -------------~--------------------~-----~~~~-~~~~~~~i~~~a~---~~s~~~L~~~~~~l~~~~~ 291 (313)
T PRK05564 254 -------------N--------------------E-----ELII-NIDKIEDIKHISE---KFSYKKLNKMIEIINDTRD 291 (313)
T ss_pred -------------c--------------------h-----hhhc-ChhHHHHHHHHHh---hCCHHHHHHHHHHHHHHHH
Confidence 0 0 0001 1122223322222 5788889999999999999
Q ss_pred hhhcCCChhHHHHHHHHHHHH
Q psy12150 430 RLQDGASEYIQILDLGSIVIK 450 (456)
Q Consensus 430 ~l~~g~~~~~ql~~l~~~~~~ 450 (456)
.++.+.|..+.+..++..+..
T Consensus 292 ~l~~n~n~~l~le~lll~~~~ 312 (313)
T PRK05564 292 NLSSNVNPTLVFDSMLIKMQE 312 (313)
T ss_pred HHHHcCCccHHHHHHHHhhhc
Confidence 999999999999999887653
No 51
>PRK05907 hypothetical protein; Provisional
Probab=99.95 E-value=3e-25 Score=213.72 Aligned_cols=287 Identities=9% Similarity=0.063 Sum_probs=227.0
Q ss_pred HHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCC
Q psy12150 54 VSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133 (456)
Q Consensus 54 ~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 133 (456)
+..+.+.+++|. |.|++||.+- ..+.+.+.+.+..+.. ..+++.+. .+.+.+..+.+.+++.
T Consensus 7 ~~~~~~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~~~----~~fdg~~~----~~~~ii~~aetlPfFa------ 68 (311)
T PRK05907 7 FKDFSQYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSGRK----SEFDGQGL----LQQELLSWTEHFGLFA------ 68 (311)
T ss_pred HHHHHHHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCCcc----ceecCCCC----CHHHHHHHHhcCCccc------
Confidence 456677788888 7799999997 6677777776643321 33455442 2344455555555554
Q ss_pred CCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEE-EEec--CcccccccccCCceE---EEecCCCHHHHHHHHHH
Q psy12150 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC-LICN--YVSCIIQPLTSRCSK---FRFKPLAENTMLTRLQY 207 (456)
Q Consensus 134 ~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lI-l~~~--~~~kl~~~l~~r~~~---i~f~~~~~~el~~~l~~ 207 (456)
++|+|++.+.+.+.....+.|..|+++|++.+++| ++.+ .++++.+.+.+.+.+ ++|.++.+.++..|+..
T Consensus 69 ---erRlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~~~d~~kkl~K~i~k~~~v~~~~e~~~l~e~~L~~Wi~~ 145 (311)
T PRK05907 69 ---SQETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTTKQECFSSLSKKLSSALCLSLFGEWFADRDKRIAQLLIQ 145 (311)
T ss_pred ---CeEEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEecccHHHHHHHHHhhcceeccccccCCCCHHHHHHHHHH
Confidence 88999999988887767889999999999975555 5542 123344555533333 48999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhh-CCCCCCHHHHHHHhCCCCHHHHHHHHcc---cchHHHHH
Q psy12150 208 ICEQESVMCDFKALETLVETS-GGDMRRAITCLQSCARLK-GGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEK 282 (456)
Q Consensus 208 ~~~~~~~~i~~~~l~~L~~~s-~gdlr~~~~~L~~~~~~~-~~~~It~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~ 282 (456)
++++.|+.+++++++.++.++ ++|+..+.++++|++.|+ +++.||.++|.++++.+.+.++|+|+++ |+..+|++
T Consensus 146 ~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~nIF~L~dai~~~~~~~Al~ 225 (311)
T PRK05907 146 RAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAASLWKLRDALLRRDRVEGHS 225 (311)
T ss_pred HHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCcccccHHHHHHHHHccCHHHHHH
Confidence 999999999999999999999 599999999999999996 4778999999999999999999999999 99999999
Q ss_pred HHHHHHHh-ccCHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccc
Q psy12150 283 YIEDLILE-AYSATQLF----DQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDV 357 (456)
Q Consensus 283 ~~~~l~~~-~~~~~~i~----~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~ 357 (456)
+|++|+.+ |++|+.|+ ||| ++
T Consensus 226 il~~Ll~~~ge~p~~ILall~rQf--l~---------------------------------------------------- 251 (311)
T PRK05907 226 LLRSLLSDMGEDPLGIIAFLRSQC--LY---------------------------------------------------- 251 (311)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHH--HH----------------------------------------------------
Confidence 99999999 99999977 787 55
Q ss_pred hhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhhcCC-C
Q psy12150 358 LEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA-S 436 (456)
Q Consensus 358 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~-~ 436 (456)
.++.+..+|++.. |++-. -++...+.+++..++++|+++++|. +
T Consensus 252 --------------------------~~k~l~~~g~~~~------~p~~v---afs~~~L~~~~~~l~~~D~~iKtg~~d 296 (311)
T PRK05907 252 --------------------------GLRSIEEQSKERK------HRIFV---AYGKERLLQALNLLFYAESLIKNNVQD 296 (311)
T ss_pred --------------------------HHHHHHHhcCCCC------CCeEE---EECHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 5777788887733 55222 1799999999999999999999985 5
Q ss_pred hhHHHHHHHHHHHH
Q psy12150 437 EYIQILDLGSIVIK 450 (456)
Q Consensus 437 ~~~ql~~l~~~~~~ 450 (456)
..+.+.-|+..++.
T Consensus 297 ~~~~lElli~~~~~ 310 (311)
T PRK05907 297 PILAVETLVIRMTN 310 (311)
T ss_pred hHHHHHHHHHHHhc
Confidence 55567778877663
No 52
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.95 E-value=2.3e-26 Score=206.02 Aligned_cols=200 Identities=23% Similarity=0.305 Sum_probs=145.0
Q ss_pred CCCCCCCcchhccCCCCcccccccHHHHHHHHHHHh-----cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEE
Q psy12150 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLS-----GADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILE 101 (456)
Q Consensus 27 ~~~~~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~-----~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e 101 (456)
.......|+.++.||++|+|++||++++..++-+++ +..++|++||||||+||||+|+.+++++.. ++..
T Consensus 6 ~~~~~~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~-----~~~~ 80 (233)
T PF05496_consen 6 QEQEEEAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGV-----NFKI 80 (233)
T ss_dssp ------S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT-------EEE
T ss_pred ccCCcchhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCC-----CeEe
Confidence 345667899999999999999999999988876654 345678999999999999999999999754 4556
Q ss_pred eeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc----------------
Q psy12150 102 LNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET---------------- 165 (456)
Q Consensus 102 ~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~---------------- 165 (456)
.++.......++...+..+. +..|+||||+|+|++..++.|+.+||+..
T Consensus 81 ~sg~~i~k~~dl~~il~~l~---------------~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~ 145 (233)
T PF05496_consen 81 TSGPAIEKAGDLAAILTNLK---------------EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRI 145 (233)
T ss_dssp EECCC--SCHHHHHHHHT-----------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEE
T ss_pred ccchhhhhHHHHHHHHHhcC---------------CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeec
Confidence 66655444555555443321 33499999999999999999999999743
Q ss_pred --CcceEEEEecCcccccccccCCceE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy12150 166 --KSTRFCLICNYVSCIIQPLTSRCSK-FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242 (456)
Q Consensus 166 --~~~~lIl~~~~~~kl~~~l~~r~~~-i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~ 242 (456)
+...+|-+++....+..+|++|+.. .++..++.+++..++.+.+...+++++++++.+|+.+|.|++|-+.+.|+.+
T Consensus 146 ~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 146 NLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp E----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred cCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 1234666677778889999999985 5799999999999999999999999999999999999999999999999998
Q ss_pred HHhh
Q psy12150 243 ARLK 246 (456)
Q Consensus 243 ~~~~ 246 (456)
..|+
T Consensus 226 rD~a 229 (233)
T PF05496_consen 226 RDFA 229 (233)
T ss_dssp CCCC
T ss_pred HHHH
Confidence 7765
No 53
>KOG2028|consensus
Probab=99.94 E-value=9e-26 Score=211.22 Aligned_cols=260 Identities=20% Similarity=0.253 Sum_probs=204.7
Q ss_pred CCCcchhccCCCCcccccccHHHH---HHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC
Q psy12150 31 KPVPWVEKYRPKTIDDVIEQQEVV---SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (456)
Q Consensus 31 ~~~~w~eky~P~~~~~ivg~~~~~---~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~ 107 (456)
...|+.|+-||++++|.+||++.+ .-|+..++.++.|.++|+||||||||++|+.++....... ..++++++..
T Consensus 124 qh~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt~- 200 (554)
T KOG2028|consen 124 QHKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSATN- 200 (554)
T ss_pred ccCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEeccc-
Confidence 567999999999999999999988 4588999999999999999999999999999998754433 4688888776
Q ss_pred cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEec--Cccccccccc
Q psy12150 108 RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN--YVSCIIQPLT 185 (456)
Q Consensus 108 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~--~~~kl~~~l~ 185 (456)
.+..+++..++..-...... ..+.|+||||++++++.+|+.++..+|+.. +.+|-+++ ....+..+|.
T Consensus 201 a~t~dvR~ife~aq~~~~l~--------krkTilFiDEiHRFNksQQD~fLP~VE~G~--I~lIGATTENPSFqln~aLl 270 (554)
T KOG2028|consen 201 AKTNDVRDIFEQAQNEKSLT--------KRKTILFIDEIHRFNKSQQDTFLPHVENGD--ITLIGATTENPSFQLNAALL 270 (554)
T ss_pred cchHHHHHHHHHHHHHHhhh--------cceeEEEeHHhhhhhhhhhhcccceeccCc--eEEEecccCCCccchhHHHH
Confidence 55666777666554333222 255699999999999999999999988754 44555443 4467889999
Q ss_pred CCceEEEecCCCHHHHHHHHHHHHH------Hc-------CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--C---
Q psy12150 186 SRCSKFRFKPLAENTMLTRLQYICE------QE-------SVMCDFKALETLVETSGGDMRRAITCLQSCARLK--G--- 247 (456)
Q Consensus 186 ~r~~~i~f~~~~~~el~~~l~~~~~------~~-------~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~--~--- 247 (456)
+||.++.+.+++.+++..+|.+... +. .+.+++.+++.|+..+.||.|.++|.|+...... .
T Consensus 271 SRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~ 350 (554)
T KOG2028|consen 271 SRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQ 350 (554)
T ss_pred hccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999987443 11 1247889999999999999999999999874332 1
Q ss_pred --CCCCCHHHHHHHhCCCC------HHHHHHHHcc-------cchHHHHHHHHHHHHhccCHHHHHHHHHH
Q psy12150 248 --GEGIVNEDVLEVTGVIP------KPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHD 303 (456)
Q Consensus 248 --~~~It~~~v~~~~~~~~------~~~i~~l~~~-------~~~~~a~~~~~~l~~~~~~~~~i~~q~~~ 303 (456)
...++.+||++.+.... .+.-...+.+ ++...++.|+..|++.||+|+-+.|.+-+
T Consensus 351 ~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaRMLegGEdPLYVARRlvR 421 (554)
T KOG2028|consen 351 SSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVR 421 (554)
T ss_pred cccceecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCccchHHHHHHHHHccCCCcHHHHHHHHH
Confidence 23789999998876441 2233333333 88889999999999999999988876543
No 54
>PRK07914 hypothetical protein; Reviewed
Probab=99.94 E-value=4.1e-24 Score=209.13 Aligned_cols=290 Identities=11% Similarity=0.060 Sum_probs=231.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcC--CccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFG--DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~--~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE 145 (456)
-|+|||++-+........+.+.+.. +...+++..+++.+... .+ +.++...+.+ +++|+|++++
T Consensus 7 iYll~G~E~~l~~~~~~~i~~~~~~~~~~~~~n~~~~d~~~~~~----~~-i~~~~t~plF---------~~rRlV~v~~ 72 (320)
T PRK07914 7 LHLVLGDEELLVERAVAAVLRSARQRAGTADVPVSRMRAGDVST----YE-LAELLSPSLF---------AEERVVVLEA 72 (320)
T ss_pred eEEEEecHHHHHHHHHHHHHHHHhcCcCCCCCceEEeccccCCH----HH-HHHhcCCCCC---------CCceEEEEeC
Confidence 3999999988888888888876643 33355788888766433 22 3444434444 3889999999
Q ss_pred CCCccHHHHHHHHHHHHhccCcceEEEEecC---cccccccccCCc-eEEEecCC-CHHHHHHHHHHHHHHcCCCCCHHH
Q psy12150 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNY---VSCIIQPLTSRC-SKFRFKPL-AENTMLTRLQYICEQESVMCDFKA 220 (456)
Q Consensus 146 ~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~---~~kl~~~l~~r~-~~i~f~~~-~~~el~~~l~~~~~~~~~~i~~~~ 220 (456)
+..+.++..+.|..|++++++.+++|++++. .+++++.+.+.+ ..+.|.++ +..++..|+..++++.|+.+++++
T Consensus 73 ~~~~~~~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~a~~~g~~i~~~A 152 (320)
T PRK07914 73 AAEAGKDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRKEFRSLRVKVDDDT 152 (320)
T ss_pred hHhccHHHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 8877766778899999999998888887542 344567787775 48899999 999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHH
Q psy12150 221 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQL 297 (456)
Q Consensus 221 l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i 297 (456)
++.|++++++|+..+.+++++++.|. ++.||.++|.++++...+.++|+++++ |+..+|..++++|+..|++|+.|
T Consensus 153 ~~~L~~~~g~dl~~l~~EleKL~~~~-~~~It~e~V~~~v~~~~~~~vf~L~dAi~~g~~~~A~~~l~~L~~~ge~p~~i 231 (320)
T PRK07914 153 VTALLDAVGSDLRELASACSQLVADT-GGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDVAGAAEALRWAMMRGEPHVVL 231 (320)
T ss_pred HHHHHHHHCccHHHHHHHHHHHhcCC-CCCcCHHHHHHHcCCCeechHHHHHHHHHCCCHHHHHHHHHHHHHCCCchHHH
Confidence 99999999999999999999997764 468999999999999999999999999 99999999999999999999987
Q ss_pred H----HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHh
Q psy12150 298 F----DQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 373 (456)
Q Consensus 298 ~----~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 373 (456)
+ +|||.++
T Consensus 232 l~~l~~~~r~L~-------------------------------------------------------------------- 243 (320)
T PRK07914 232 ADALAEAVHTIA-------------------------------------------------------------------- 243 (320)
T ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Confidence 6 7888877
Q ss_pred hhCChHHHHHHHHHHHHcCCCHHHHHHHH-------HHHHhcCCCCCHHHHHHHHHHHHHHHhhhhcC-CChhHHHHHHH
Q psy12150 374 KVDSFQVLEKYIEDLILEAYSATQLFDQF-------HDIVMSASSLSDKQKALILEKLAECNARLQDG-ASEYIQILDLG 445 (456)
Q Consensus 374 ~~~~~~~~~~~~~~l~~~g~s~~di~~~l-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g-~~~~~ql~~l~ 445 (456)
.++.+ .| +..++.+.+ ..+......++.....+++..|+++|+.++.| .+..+.+..++
T Consensus 244 ----------~~k~~--~~-~~~~i~~~l~i~p~~~~~~~~~~~~~s~~~L~~~l~~l~~~D~~lK~~~~~~~~~lE~~i 310 (320)
T PRK07914 244 ----------RVGPL--SG-DPYRLAGELGMPPWRVQKAQKQARRWSRDTVATAMRVVAALNADVKGAAADADYALESAV 310 (320)
T ss_pred ----------HHHHh--cC-CHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence 12211 12 344444333 11222334799999999999999999999987 67778899999
Q ss_pred HHHHHHhc
Q psy12150 446 SIVIKANK 453 (456)
Q Consensus 446 ~~~~~~~~ 453 (456)
..++++..
T Consensus 311 ~~~~~~~~ 318 (320)
T PRK07914 311 RRVAELVA 318 (320)
T ss_pred HHHHHHhc
Confidence 99998754
No 55
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=99.94 E-value=5.2e-24 Score=209.49 Aligned_cols=295 Identities=16% Similarity=0.130 Sum_probs=228.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCc-cccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcC
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l~~~~-~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE 145 (456)
|.|+|||+....+...++.+.+.+..+. ..+++..+++.+. +.+.+.+......+++ +++++|++++
T Consensus 2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~~---~~~~~~~~~~~t~pff---------~~~rlVvv~~ 69 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDA---DQAIQALNEAMTPPFG---------SGGRLVWLKN 69 (326)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCccc---hHHHHHHHHhcCCCCC---------CCceEEEEeC
Confidence 5699999999999999999988765432 2345666665542 1233333333333333 3788999999
Q ss_pred CCCc---cHHHHHHHHHHHHhccCcceEEEEecC----cccccccccCCceEEEecCC---CHHHHHHHHHHHHHHcCCC
Q psy12150 146 ADSM---THAAQAALRRTMEKETKSTRFCLICNY----VSCIIQPLTSRCSKFRFKPL---AENTMLTRLQYICEQESVM 215 (456)
Q Consensus 146 ~d~l---~~~~~~~Ll~~le~~~~~~~lIl~~~~----~~kl~~~l~~r~~~i~f~~~---~~~el~~~l~~~~~~~~~~ 215 (456)
++.+ ..+..+.|.++++++++++++|+++.. +.+..+.+.+.+....|.++ +.+++..|+..++++.|+.
T Consensus 70 ~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g~~ 149 (326)
T PRK07452 70 SPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVERTAQELGVK 149 (326)
T ss_pred chhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHHHHHHHcCCC
Confidence 8665 456778899999998888888886432 23456667777888888765 4577999999999999999
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHh
Q psy12150 216 CDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILE 290 (456)
Q Consensus 216 i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~--~~~~It~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~ 290 (456)
+++++++.|+..+++|++.+.+++++++.|+ +++.||.++|.++++.. +.++|+++++ |+..+|...+++|+.+
T Consensus 150 i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~-~~~if~l~dai~~~~~~~A~~~l~~L~~~ 228 (326)
T PRK07452 150 LTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNT-TQNSLQLADALLQGNTGKALALLDDLLDA 228 (326)
T ss_pred CCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccC-cCcHHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999995 36689999999999876 6899999999 9999999999999999
Q ss_pred ccCHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCc
Q psy12150 291 AYSATQLF----DQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPN 366 (456)
Q Consensus 291 ~~~~~~i~----~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~ 366 (456)
|++|+.|+ +|||.++
T Consensus 229 g~~p~~il~~l~~~~r~l~------------------------------------------------------------- 247 (326)
T PRK07452 229 NEPALRIVATLTGQFRTWL------------------------------------------------------------- 247 (326)
T ss_pred CCcHHHHHHHHHHHHHHHH-------------------------------------------------------------
Confidence 99999876 7888777
Q ss_pred hHHHHHhhhCChHHHHHHHHHHHHcCCC-HHHHHHHH--------HHHHhcCCCCCHHHHHHHHHHHHHHHhhhhcCCCh
Q psy12150 367 PWIEKLLKVDSFQVLEKYIEDLILEAYS-ATQLFDQF--------HDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437 (456)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~l~~~g~s-~~di~~~l--------~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~ 437 (456)
.++.+..+|.+ ..+|.+.+ +.+......++.....+++..|.++|+.+++|.++
T Consensus 248 -----------------~~k~~~~~G~~~~~~ia~~lgi~~p~~~~~~~~~~~~~s~~~L~~~l~~L~~~D~~iK~g~~~ 310 (326)
T PRK07452 248 -----------------WVKLLVESGERDVKVIAKAAGIGNPKRIYFLRKEVQGLSSQQLLKLLPLLLDLEASLKQGANP 310 (326)
T ss_pred -----------------HHHHHHHcCCCcHHHHHHHhCCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 33333444443 22233222 11112224799999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHh
Q psy12150 438 YIQILDLGSIVIKAN 452 (456)
Q Consensus 438 ~~ql~~l~~~~~~~~ 452 (456)
..-|..++..+|..+
T Consensus 311 ~~~le~~i~~~~~~~ 325 (326)
T PRK07452 311 INALQDKLIELCQLL 325 (326)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998765
No 56
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.93 E-value=1.8e-23 Score=207.72 Aligned_cols=184 Identities=22% Similarity=0.350 Sum_probs=151.7
Q ss_pred CcccccccHHHHHHHHHHHhcCC---------CCe-EEEECCCCCcHHHHHHHHHHHhcCCcc-----------------
Q psy12150 43 TIDDVIEQQEVVSVLKKCLSGAD---------LPH-FLFYGPPGTGKTSTMIAACHQLFGDMY----------------- 95 (456)
Q Consensus 43 ~~~~ivg~~~~~~~l~~~l~~~~---------~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~----------------- 95 (456)
.|++++||+.+++.|++++..++ .+| |||+||+|+|||++|+.+++.+.++..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 58999999999999999999876 677 999999999999999999999876421
Q ss_pred -ccceEEeeCC-CCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEE
Q psy12150 96 -RERILELNAS-DDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLI 173 (456)
Q Consensus 96 -~~~~~e~n~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~ 173 (456)
..++..+... ...+++.+++.+..+...+.. ++++|+||||+|.|+...++.|++.||+|++.++||++
T Consensus 83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~---------~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~ 153 (394)
T PRK07940 83 THPDVRVVAPEGLSIGVDEVRELVTIAARRPST---------GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLC 153 (394)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHHhCccc---------CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEE
Confidence 0122223222 234567777766655544322 26789999999999999999999999999999999999
Q ss_pred ecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q psy12150 174 CNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240 (456)
Q Consensus 174 ~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~ 240 (456)
++++..+.++|+|||..+.|++|+.+++.+||... .+ ++++.+..++..++|+++.++..+.
T Consensus 154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~---~~--~~~~~a~~la~~s~G~~~~A~~l~~ 215 (394)
T PRK07940 154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRR---DG--VDPETARRAARASQGHIGRARRLAT 215 (394)
T ss_pred ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHh---cC--CCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 99999999999999999999999999999998732 23 6788899999999999999887763
No 57
>PRK05629 hypothetical protein; Validated
Probab=99.93 E-value=2.2e-23 Score=203.84 Aligned_cols=299 Identities=10% Similarity=0.044 Sum_probs=224.9
Q ss_pred CCe-EEEECCCCCcHHHHHHHHHHHhcCC-ccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEE
Q psy12150 66 LPH-FLFYGPPGTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143 (456)
Q Consensus 66 ~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~-~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviI 143 (456)
+++ |+|||+...........+.+.+... ...+++..+++.+.. .+.+. +....+.+ +++|+|++
T Consensus 5 l~~vyL~~G~e~~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~e~~-~~~l~----~~~t~slF---------~~~rlV~v 70 (318)
T PRK05629 5 QPPVHLVLGDDEFLAERARLNIVHDIRSSMADSLQVTTLKASEVS-QGELL----DALSPSLF---------GEDRVIVL 70 (318)
T ss_pred CCceEEEEeCHHHHHHHHHHHHHHHHhccCCCCCceEEeecccCC-HHHHH----HhhCcCcc---------CCceEEEE
Confidence 344 9999999777666666677666443 234678888877643 23332 23333333 37889999
Q ss_pred cCCCCccHHHHHHHHHHHHhccCcceEEEEecC---cccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q psy12150 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNY---VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKA 220 (456)
Q Consensus 144 DE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~---~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~ 220 (456)
++++...+...+.+..++.++++.+++|+++.. .+++++.+.+.+..++|.++.+.++..|+..++++.|+++++++
T Consensus 71 ~~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g~~i~~~A 150 (318)
T PRK05629 71 TNMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKNHGVRPTPDV 150 (318)
T ss_pred eChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 998876666677889999999888888887753 34466778888999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHH
Q psy12150 221 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQL 297 (456)
Q Consensus 221 l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i 297 (456)
++.|+..+++|+..+.+++++++.|. ++.||.++|.+++....+.++|+++++ |+..+|+.++++|+..|++|+.|
T Consensus 151 ~~~L~~~~g~dl~~l~~EleKL~~~~-~~~It~e~V~~~v~~~~~~~iF~l~dAv~~g~~~~Al~~l~~l~~~g~~pi~i 229 (318)
T PRK05629 151 VHALLEGVGSDLRELASAISQLVEDT-QGNVTVEKVRAYYVGVAEVSGFDIADLACAGQVSKAVASTRRALQLGVSPVAL 229 (318)
T ss_pred HHHHHHHHCccHHHHHHHHHHHHhcC-CCCcCHHHHHHHhCCCccchHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 99999999999999999999998775 568999999999999999999999999 99999999999999999999997
Q ss_pred H----HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHh
Q psy12150 298 F----DQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 373 (456)
Q Consensus 298 ~----~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 373 (456)
+ +|||.+.-+ ++.. +. ....++....
T Consensus 230 l~~l~~~~r~l~~l--------------------------------~~~~-----~~-~~~~~ia~~l------------ 259 (318)
T PRK05629 230 AAALSMKVGQIARL--------------------------------YSTR-----GR-IDSFELAKEL------------ 259 (318)
T ss_pred HHHHHHHHHHHHHH--------------------------------Hhhc-----CC-CCHHHHHHHc------------
Confidence 6 555544300 0000 00 0000011111
Q ss_pred hhCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhhcC-CChhHHHHHHHHHHHHH
Q psy12150 374 KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG-ASEYIQILDLGSIVIKA 451 (456)
Q Consensus 374 ~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g-~~~~~ql~~l~~~~~~~ 451 (456)
|..+. .+. .+......|+.....+++..|+++|+.++.| .+..+-|..+|..+.++
T Consensus 260 ------------------~i~p~-~~~---~~~~~ar~~s~~~L~~~l~~l~~~D~~~K~~~~d~~~~lE~~i~~~~~~ 316 (318)
T PRK05629 260 ------------------GMPPF-VVE---KTAKVARNWSGDAVSEAVILMADLDAAVKGQGGDPEFAIESAVRRVAEL 316 (318)
T ss_pred ------------------CCChH-HHH---HHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhh
Confidence 11111 111 1222234789999999999999999999985 58888999999887653
No 58
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=99.92 E-value=3.2e-22 Score=198.19 Aligned_cols=303 Identities=13% Similarity=0.107 Sum_probs=231.4
Q ss_pred HHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCc-cccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCC
Q psy12150 57 LKKCLSG--ADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133 (456)
Q Consensus 57 l~~~l~~--~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~-~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 133 (456)
+...+.. +..|.|+|||++.+.....++.+.+.+.... ..+++..+++.+... +..+.+..+...+.++
T Consensus 9 ~~~~l~~~~~~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~~fn~~~~~~~e~~~--~~~~~~~~~~t~slF~------ 80 (343)
T PRK06585 9 VDRFLARPDPKIRAVLLYGPDRGLVRERARRLAKSVVPDLDDPFAVVRLDGDDLDA--DPARLEDEANAISLFG------ 80 (343)
T ss_pred HHHHHhCCCCCCeEEEEeCCchHHHHHHHHHHHHHhcCCCCCCcceeeccHHHhhc--CHHHHHHHHhCCCCCC------
Confidence 4444543 2445599999999999999999888765432 123555555443110 1234444444444443
Q ss_pred CCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCc---cccccccc--CCceEEEecCCCHHHHHHHHHHH
Q psy12150 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV---SCIIQPLT--SRCSKFRFKPLAENTMLTRLQYI 208 (456)
Q Consensus 134 ~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~---~kl~~~l~--~r~~~i~f~~~~~~el~~~l~~~ 208 (456)
++++|++++.+ ....+.|..+++++++.+++|+.+... .++.+.+. ..+..+.|.+++..++..|+..+
T Consensus 81 ---~~rlViv~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~~ 154 (343)
T PRK06585 81 ---GRRLIWVRAGS---KNLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDDE 154 (343)
T ss_pred ---CceEEEEECCc---hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHH
Confidence 77899999764 344567888999988888888776542 23334332 33567899999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhC-CCCCCHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHH
Q psy12150 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG-GEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYI 284 (456)
Q Consensus 209 ~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~-~~~It~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~ 284 (456)
+++.|+++++++++.|++.++||++.+.++|++++.|++ ++.||.++|.++++...+.++|+++++ |+..+|..++
T Consensus 155 ~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~dai~~~~~~~a~~~l 234 (343)
T PRK06585 155 LAEAGLRITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAADAALAGDLAAFERAL 234 (343)
T ss_pred HHHCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999974 568999999999999999999999999 9999999999
Q ss_pred HHHHHhccCHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhc
Q psy12150 285 EDLILEAYSATQLF----DQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 360 (456)
Q Consensus 285 ~~l~~~~~~~~~i~----~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~ 360 (456)
+.|+.+|++|+.|+ +|||.++
T Consensus 235 ~~ll~~g~~p~~il~~L~~~~r~L~------------------------------------------------------- 259 (343)
T PRK06585 235 DRALAEGTAPVLILRAALRHFQRLH------------------------------------------------------- 259 (343)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHH-------------------------------------------------------
Confidence 99999999999976 7888877
Q ss_pred ccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHH---------HHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q psy12150 361 TGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFH---------DIVMSASSLSDKQKALILEKLAECNARL 431 (456)
Q Consensus 361 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~l 431 (456)
.++.+..+|.+..+++..+. .+......++.....+++..|.++|+.+
T Consensus 260 -----------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~l 316 (343)
T PRK06585 260 -----------------------IVRLKVENGKSAEQAIASLRPPVFFKRKPDFEKALRRWSLERLLRALERLQAAELDC 316 (343)
T ss_pred -----------------------HHHHHHhcCCCHHHHHHhhCCCCCcchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 45555566777766666542 1222334789999999999999999999
Q ss_pred hcCC-ChhHHHHHHHHHHHHH
Q psy12150 432 QDGA-SEYIQILDLGSIVIKA 451 (456)
Q Consensus 432 ~~g~-~~~~ql~~l~~~~~~~ 451 (456)
+.|. ++.+-+..++..++..
T Consensus 317 K~~~~~~~~~le~~i~~~~~~ 337 (343)
T PRK06585 317 RRNPALADAIARRVLLSIAVR 337 (343)
T ss_pred hcCCCcHHHHHHHHHHHHHHH
Confidence 9975 4455578888887764
No 59
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=99.91 E-value=7.1e-22 Score=193.88 Aligned_cols=231 Identities=18% Similarity=0.166 Sum_probs=184.2
Q ss_pred HHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCC
Q psy12150 55 SVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133 (456)
Q Consensus 55 ~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 133 (456)
.++.+.++.+.+++ |+|||++-+.+...+..+.+.+..+....+ +.++ + . +..+.+..+...+.++
T Consensus 4 ~~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~~~~-~~~~--~-~---~~~~i~~~~~t~plF~------ 70 (328)
T PRK08487 4 KELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENELKT-LYFD--E-Y---DFEQAKDFLSQSSLFG------ 70 (328)
T ss_pred HHHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchHhhh-hchh--h-c---cHHHHHHHHhcccccC------
Confidence 46778888887777 999999988888888888887654322221 2222 1 1 2334445555555554
Q ss_pred CCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcc---cccccccCC--ceEEEecCCCHHHHHHHHHHH
Q psy12150 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS---CIIQPLTSR--CSKFRFKPLAENTMLTRLQYI 208 (456)
Q Consensus 134 ~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~---kl~~~l~~r--~~~i~f~~~~~~el~~~l~~~ 208 (456)
++++|++++...+.....+.|..+++++++.+++|++..... ++.+.+... +..+.|.++++.++..|+..+
T Consensus 71 ---~~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~~~~l~~~i~~~ 147 (328)
T PRK08487 71 ---GKNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPNAREALELLQER 147 (328)
T ss_pred ---CceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCCHHHHHHHHHHH
Confidence 888999999877776677889999999888777776544322 233333333 668999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHH
Q psy12150 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIE 285 (456)
Q Consensus 209 ~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~ 285 (456)
+++.|+.+++++++.|+..+++|+..+.++|++++.|. +.||.++|.++++.+.+.++|+++++ |+ ++...++
T Consensus 148 ~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~--~~It~edV~~~v~~~~e~~vF~l~dai~~g~--~a~~~l~ 223 (328)
T PRK08487 148 AKELGLDIDQNALNHLYFIHNEDLALAANELEKLAILN--EPITLKDIQELVFGLGSVSFEDFFEKLLNKK--DIKDDLE 223 (328)
T ss_pred HHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhc--CCCCHHHHHHHhcccccccHHHHHHHHHCCC--cHHHHHH
Confidence 99999999999999999999999999999999999995 37999999999999999999999999 55 6899999
Q ss_pred HHHHhccCHHHHH----HHHHHHH
Q psy12150 286 DLILEAYSATQLF----DQFHDIV 305 (456)
Q Consensus 286 ~l~~~~~~~~~i~----~q~~~l~ 305 (456)
+|+.+|++|+.|+ +|||.++
T Consensus 224 ~L~~~g~~pi~Il~~L~r~~~~L~ 247 (328)
T PRK08487 224 KLLEEGFNEIALLNSLERFFYQLF 247 (328)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999976 7888876
No 60
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=99.91 E-value=1.1e-21 Score=194.21 Aligned_cols=303 Identities=18% Similarity=0.165 Sum_probs=231.1
Q ss_pred HHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcC-CccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCC
Q psy12150 55 SVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132 (456)
Q Consensus 55 ~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~-~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 132 (456)
..+.+.++.+ +.+ |+|||+.-.-+...++.+.+.+.. +....++..+++.+.. +.+.+..+...+.++
T Consensus 6 ~~~~~~~~~~-~~~~~li~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~----~~~l~~~~~t~~lF~----- 75 (340)
T PRK05574 6 EQLEKQLKKG-LAPLYLLYGDEPLLLQEAKDAIRAAARAQGFDERNVFTFDGSETD----WDDVLEACQSLPLFS----- 75 (340)
T ss_pred HHHHHHHhCC-CCceEEEEcCcHHHHHHHHHHHHHHHHcCCCceeeEEEeecCCCC----HHHHHHHhhccCccc-----
Confidence 4566677766 555 999999977777777777776543 2234456666666432 233333333333333
Q ss_pred CCCCCcEEEEEcCCCCccHH----HHHHHHHHHHhccC--cceEEEEecCc---ccc---cccccCCceEEEecCCCHHH
Q psy12150 133 KPCPPFKIVILDEADSMTHA----AQAALRRTMEKETK--STRFCLICNYV---SCI---IQPLTSRCSKFRFKPLAENT 200 (456)
Q Consensus 133 ~~~~~~~iviIDE~d~l~~~----~~~~Ll~~le~~~~--~~~lIl~~~~~---~kl---~~~l~~r~~~i~f~~~~~~e 200 (456)
++++|+|++++.+... ....+..++ ++++ ..++++..+.. .++ .+.+.+++..++|.+++..+
T Consensus 76 ----~~klvii~~~~~l~~~~~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~~~~~~~~~~ 150 (340)
T PRK05574 76 ----DRKLVELRLPEFLTGAKGEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVVEAQPPKEAE 150 (340)
T ss_pred ----cCeEEEEECCCCCCchhHHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEEEcCCCCHHH
Confidence 7789999999998654 344556666 4444 34455554432 233 67788889999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCCHHHHHHHHcc---cch
Q psy12150 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSF 277 (456)
Q Consensus 201 l~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~~~~~~i~~l~~~---~~~ 277 (456)
+..|+...+++.|+.+++++++.|++.++||++.+.+++++++.|++++.||.++|.++++...+.++|+++++ ++.
T Consensus 151 ~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~~~~f~l~dai~~~~~ 230 (340)
T PRK05574 151 LPQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSARFDVFDLVDAILAGKI 230 (340)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999985455999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHhccCHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcc
Q psy12150 278 QVLEKYIEDLILEAYSATQLF----DQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 353 (456)
Q Consensus 278 ~~a~~~~~~l~~~~~~~~~i~----~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~ 353 (456)
.++...++.++.+|++|+.|+ ++|+.++
T Consensus 231 ~~a~~~l~~l~~~~~~~~~il~~l~~~~~~l~------------------------------------------------ 262 (340)
T PRK05574 231 KRALRILDGLRLEGEEPIKLLAALQREFRLLL------------------------------------------------ 262 (340)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH------------------------------------------------
Confidence 999999999999999998877 5666666
Q ss_pred cccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHH-------HHHHhcCCCCCHHHHHHHHHHHHH
Q psy12150 354 NEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQF-------HDIVMSASSLSDKQKALILEKLAE 426 (456)
Q Consensus 354 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l-------~~~~~~~~~~~~~~~~~~~~~l~~ 426 (456)
.++.+..+|++..+++..+ ..+......++.....+++..|.+
T Consensus 263 ------------------------------~~k~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~L~~~l~~L~~ 312 (340)
T PRK05574 263 ------------------------------QLKILSQQGYPLQQLAKELRVWPYRVKLALRALQRLSLKQLKQAIQLLAE 312 (340)
T ss_pred ------------------------------HHHHHHHcCCCHHHHHHHcCCChhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4554555666666666544 122233347999999999999999
Q ss_pred HHhhhhcCC--ChhHHHHHHHHHHHH
Q psy12150 427 CNARLQDGA--SEYIQILDLGSIVIK 450 (456)
Q Consensus 427 ~~~~l~~g~--~~~~ql~~l~~~~~~ 450 (456)
+|++++.|. +..+-+..++..++.
T Consensus 313 ~d~~iK~~~~~~~~~~le~~ii~l~~ 338 (340)
T PRK05574 313 TDYQIKTGYGGDKWLELELLLLKLAG 338 (340)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHhcc
Confidence 999999995 777778888877764
No 61
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.91 E-value=2.2e-22 Score=197.31 Aligned_cols=193 Identities=23% Similarity=0.396 Sum_probs=158.5
Q ss_pred ccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc-------------c-------
Q psy12150 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY-------------R------- 96 (456)
Q Consensus 38 ky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~-------------~------- 96 (456)
.+.|..+++++|++++...|...+..++.+| +||+||+|+|||++++.+++.+.+... .
T Consensus 16 ~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i 95 (351)
T PRK09112 16 VPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQI 95 (351)
T ss_pred CCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHH
Confidence 3689999999999999999999999999999 999999999999999999999876210 0
Q ss_pred -----cceEEeeCC---------CCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHH
Q psy12150 97 -----ERILELNAS---------DDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTME 162 (456)
Q Consensus 97 -----~~~~e~n~~---------~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le 162 (456)
.++..++.. ....++.+++....+...+.. +.++||||||+|.|+.+.++.|++.+|
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~---------g~~rVviIDeAd~l~~~aanaLLk~LE 166 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGD---------GNWRIVIIDPADDMNRNAANAILKTLE 166 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhcccc---------CCceEEEEEchhhcCHHHHHHHHHHHh
Confidence 012223211 112345566544433333222 267899999999999999999999999
Q ss_pred hccCcceEEEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q psy12150 163 KETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241 (456)
Q Consensus 163 ~~~~~~~lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~ 241 (456)
+++..++||++++.+.++.+++++||..++|.+++.+++.+||...+...+ ++++++..+++.++|++|.+++.++.
T Consensus 167 Epp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 167 EPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred cCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999998654433 78999999999999999999998864
No 62
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.90 E-value=1.2e-22 Score=199.54 Aligned_cols=212 Identities=19% Similarity=0.201 Sum_probs=167.3
Q ss_pred CCCCcchhccCCCCcccccccHHHHHHHHHHHhc-----CCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeC
Q psy12150 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG-----ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (456)
Q Consensus 30 ~~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~-----~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~ 104 (456)
....+|-.+|||++|++++|+++.+..+..++.. ..+++++||||||+|||++++++++.+.. .+...+.
T Consensus 10 ~~~~~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~-----~~~~~~~ 84 (328)
T PRK00080 10 EEEDEIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV-----NIRITSG 84 (328)
T ss_pred cccchhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC-----CeEEEec
Confidence 3346788899999999999999999998877752 33456999999999999999999999854 2333343
Q ss_pred CCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc------------------C
Q psy12150 105 SDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET------------------K 166 (456)
Q Consensus 105 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~------------------~ 166 (456)
........+...+..+ ....+|||||+|.++...++.|+..+++.. +
T Consensus 85 ~~~~~~~~l~~~l~~l---------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~ 149 (328)
T PRK00080 85 PALEKPGDLAAILTNL---------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred ccccChHHHHHHHHhc---------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCC
Confidence 3322223333222211 123499999999999888888888877542 2
Q ss_pred cceEEEEecCcccccccccCCce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q psy12150 167 STRFCLICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245 (456)
Q Consensus 167 ~~~lIl~~~~~~kl~~~l~~r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~ 245 (456)
..++|.+++....+.+++++|+. .++|.+++.+++.++++..+...++.+++++++.|++.++|++|.+.+.++.+..+
T Consensus 150 ~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~ 229 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDF 229 (328)
T ss_pred CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 35677788888888888999984 78999999999999999999999999999999999999999999999999987766
Q ss_pred h---CCCCCCHHHHHHHhC
Q psy12150 246 K---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 246 ~---~~~~It~~~v~~~~~ 261 (456)
+ +.+.|+.+++..++.
T Consensus 230 a~~~~~~~I~~~~v~~~l~ 248 (328)
T PRK00080 230 AQVKGDGVITKEIADKALD 248 (328)
T ss_pred HHHcCCCCCCHHHHHHHHH
Confidence 5 356899999887773
No 63
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.90 E-value=3.1e-22 Score=196.87 Aligned_cols=290 Identities=34% Similarity=0.469 Sum_probs=214.9
Q ss_pred ccccccHHHHHHHHHHHh-cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCc-------------------cccceEEee
Q psy12150 45 DDVIEQQEVVSVLKKCLS-GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM-------------------YRERILELN 103 (456)
Q Consensus 45 ~~ivg~~~~~~~l~~~l~-~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~-------------------~~~~~~e~n 103 (456)
+++++++.....+..+.. .++.+| +||+||||+|||+++.++++.+.+.. ...++++++
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 367888889989888887 667888 99999999999999999999998644 235899999
Q ss_pred CCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCccccccc
Q psy12150 104 ASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183 (456)
Q Consensus 104 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~ 183 (456)
+++.+..+...+.++.+......... .+++++|||||+|.|+.+++++|++.+|+|+.+++||++||++.++.++
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~~~-----~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~t 155 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSESPL-----EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPT 155 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccCCC-----CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccch
Confidence 99988765555556655544322210 1377899999999999999999999999999999999999999999999
Q ss_pred ccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCC
Q psy12150 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263 (456)
Q Consensus 184 l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~~ 263 (456)
++|||..+.|.+++......+.+ ++++..++..+.||+|.+++.++.++.. ......+.+.....
T Consensus 156 I~SRc~~i~f~~~~~~~~i~~~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~~~~----~~~~~~~~~~~~~~ 220 (325)
T COG0470 156 IRSRCQRIRFKPPSRLEAIAWLE-----------DQGLEEIAAVAEGDARKAINPLQALAAL----EIGEESIYEALLLA 220 (325)
T ss_pred hhhcceeeecCCchHHHHHHHhh-----------ccchhHHHHHHHHHHHcCCCHHHHHHHh----cccHHHHHHHHHhh
Confidence 99999999999955544444433 6778899999999999999999988774 22233332222221
Q ss_pred CHH-----HHHHHHcccchHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHHHHHH
Q psy12150 264 PKP-----WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAIT 338 (456)
Q Consensus 264 ~~~-----~i~~l~~~~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~~ 338 (456)
... ....++.. ..
T Consensus 221 ~~~~~~~~~~~~~~~~------------~~-------------------------------------------------- 238 (325)
T COG0470 221 LPESLAQLAALELLKL------------AE-------------------------------------------------- 238 (325)
T ss_pred ChhhcccccHHHHHHH------------HH--------------------------------------------------
Confidence 111 11111100 00
Q ss_pred HHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--CCCHHH
Q psy12150 339 CLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS--SLSDKQ 416 (456)
Q Consensus 339 ~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~~~~~~~--~~~~~~ 416 (456)
.............+...|++..+....++....... ......
T Consensus 239 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (325)
T COG0470 239 ------------------------------------NKFLEALEKLWLLLLLEGLLGEDLLDQLQRELLKLDKALIQEEK 282 (325)
T ss_pred ------------------------------------hcchhHHHHHHHHHHHcCcchhHHHHHHHHHHhhchhhhhhhhH
Confidence 011112222333467888888887777777766542 146677
Q ss_pred HHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHHh
Q psy12150 417 KALILEKLAECNARLQDGASEYIQILDLGSIVIKAN 452 (456)
Q Consensus 417 ~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~~ 452 (456)
....+..++..+.++..|..+.+|+.+++..+....
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (325)
T COG0470 283 AAELLDALAQARRRLLDGLLALIQLENLLAELLLLQ 318 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999887763
No 64
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.90 E-value=3.3e-21 Score=188.76 Aligned_cols=182 Identities=24% Similarity=0.354 Sum_probs=147.2
Q ss_pred Ccccccc-cHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc-------------------ccceEE
Q psy12150 43 TIDDVIE-QQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY-------------------RERILE 101 (456)
Q Consensus 43 ~~~~ivg-~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~-------------------~~~~~e 101 (456)
.|+.++| |+.+++.|++.+..++++| |||+||+|+||+++++.+++.+.+... ..++..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~ 82 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL 82 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE
Confidence 4778899 9999999999999999999 899999999999999999999876421 012222
Q ss_pred eeCC-CCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccc
Q psy12150 102 LNAS-DDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180 (456)
Q Consensus 102 ~n~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl 180 (456)
+... ...+.+.+++.+..+...+.. +++||+||||+|.|+.+++++|+++||+|+++++||++++.+.++
T Consensus 83 i~~~~~~i~id~ir~l~~~~~~~~~~---------~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 83 VAPDGQSIKKDQIRYLKEEFSKSGVE---------SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred eccccccCCHHHHHHHHHHHhhCCcc---------cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 2221 224567777777666654433 277899999999999999999999999999999999999999999
Q ss_pred cccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q psy12150 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240 (456)
Q Consensus 181 ~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~ 240 (456)
.++++|||..++|.+++.+++..++.. +| ++++....++..+ |+++.++..++
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~----~g--i~~~~~~~l~~~~-g~~~~A~~l~~ 206 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQE----EG--ISESLATLLAGLT-NSVEEALALSE 206 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHH----cC--CChHHHHHHHHHc-CCHHHHHHHhc
Confidence 999999999999999999999888863 44 6666666666664 78888877654
No 65
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.89 E-value=2.8e-22 Score=207.69 Aligned_cols=231 Identities=25% Similarity=0.359 Sum_probs=173.4
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCC---cc--ccceEEeeCCC
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD---MY--RERILELNASD 106 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~---~~--~~~~~e~n~~~ 106 (456)
+.||.++|||.+|++++|++..++.++..+......+++|+||||||||++|+++++..... .+ ...++++|+..
T Consensus 52 ~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATT 131 (531)
T ss_pred cchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccc
Confidence 67999999999999999999999999988877777789999999999999999998754321 11 24688888764
Q ss_pred CcCh-HHHHHH-HHH----HHHhh-ccCCC--CCCC----CCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc--------
Q psy12150 107 DRGI-QVIRDK-VKT----FAQQT-ASGFN--QDGK----PCPPFKIVILDEADSMTHAAQAALRRTMEKET-------- 165 (456)
Q Consensus 107 ~~~~-~~i~~~-l~~----~~~~~-~~~~~--~~~~----~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-------- 165 (456)
.... ..+.+. +.. ..... .++.. +..+ ..++..++||||++.|+...|+.|++.|++..
T Consensus 132 ~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~ 211 (531)
T TIGR02902 132 ARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYY 211 (531)
T ss_pred ccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccc
Confidence 2110 111110 000 00000 00000 0000 01355699999999999999999999997521
Q ss_pred --------------------CcceEEEEe-cCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q psy12150 166 --------------------KSTRFCLIC-NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETL 224 (456)
Q Consensus 166 --------------------~~~~lIl~~-~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L 224 (456)
..+++|++| +.+..+.+++++||..+.|++++.+++..+++..+++.++.+++++++.|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I 291 (531)
T TIGR02902 212 NSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELI 291 (531)
T ss_pred cccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHH
Confidence 123555554 46788999999999999999999999999999999999999999999998
Q ss_pred HHHcCCCHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhCCC
Q psy12150 225 VETSGGDMRRAITCLQSCARLK---GGEGIVNEDVLEVTGVI 263 (456)
Q Consensus 225 ~~~s~gdlr~~~~~L~~~~~~~---~~~~It~~~v~~~~~~~ 263 (456)
..++. |.|.+.+.++.++.++ +...|+.+|+..++...
T Consensus 292 ~~y~~-n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 292 VKYAS-NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENG 332 (531)
T ss_pred HHhhh-hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCc
Confidence 88765 8999999999987766 34579999999998744
No 66
>KOG1969|consensus
Probab=99.89 E-value=1.9e-21 Score=196.74 Aligned_cols=220 Identities=27% Similarity=0.445 Sum_probs=177.3
Q ss_pred CCCcchhccCCCCcccccccHHHHHHHHHHHhc--------------------------------CCCCe--EEEECCCC
Q psy12150 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG--------------------------------ADLPH--FLFYGPPG 76 (456)
Q Consensus 31 ~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~--------------------------------~~~~~--~Ll~G~~G 76 (456)
+..+|+++|+|+.|.|++|.+..-+.+..|++. ++++. +||+||||
T Consensus 257 h~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppG 336 (877)
T KOG1969|consen 257 HDKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPG 336 (877)
T ss_pred CcceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCC
Confidence 445999999999999999999888888888752 22333 99999999
Q ss_pred CcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHH
Q psy12150 77 TGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAA 156 (456)
Q Consensus 77 ~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~ 156 (456)
.||||+|+.+|++.+. .++|+|++|.+....+.+++..+.+..... ...++|. ++||||+|.-.....+.
T Consensus 337 lGKTTLAHViAkqaGY-----sVvEINASDeRt~~~v~~kI~~avq~~s~l-~adsrP~----CLViDEIDGa~~~~Vdv 406 (877)
T KOG1969|consen 337 LGKTTLAHVIAKQAGY-----SVVEINASDERTAPMVKEKIENAVQNHSVL-DADSRPV----CLVIDEIDGAPRAAVDV 406 (877)
T ss_pred CChhHHHHHHHHhcCc-----eEEEecccccccHHHHHHHHHHHHhhcccc-ccCCCcc----eEEEecccCCcHHHHHH
Confidence 9999999999998643 799999999999999999999887765432 1223444 89999999998888888
Q ss_pred HHHHHHhc------cC---------------cceEEEEecCc-ccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCC
Q psy12150 157 LRRTMEKE------TK---------------STRFCLICNYV-SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214 (456)
Q Consensus 157 Ll~~le~~------~~---------------~~~lIl~~~~~-~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~ 214 (456)
++..+... +. .-.+|++||+. .--..+|+--+..+.|.+++..-+.+.|+.+|.++|+
T Consensus 407 ilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~m 486 (877)
T KOG1969|consen 407 ILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENM 486 (877)
T ss_pred HHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcC
Confidence 88877521 10 12366778764 3345667888899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhC--CCCCCHHHHHHHh
Q psy12150 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKG--GEGIVNEDVLEVT 260 (456)
Q Consensus 215 ~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~--~~~It~~~v~~~~ 260 (456)
..+..++..|++.+.+|+|..+|.||.++..+. ...+...++.+..
T Consensus 487 r~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r~ds~i~~~~i~a~~ 534 (877)
T KOG1969|consen 487 RADSKALNALCELTQNDIRSCINTLQFLASNVDRRDSSISVKLICAKN 534 (877)
T ss_pred CCCHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccchhhhhhhhh
Confidence 999999999999999999999999999988652 2346666665543
No 67
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.89 E-value=2.8e-22 Score=194.01 Aligned_cols=187 Identities=20% Similarity=0.363 Sum_probs=148.7
Q ss_pred CcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc-------------ccceEEeeCC---
Q psy12150 43 TIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY-------------RERILELNAS--- 105 (456)
Q Consensus 43 ~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~-------------~~~~~e~n~~--- 105 (456)
.|++++||+.+++.+.+.++.++.+| |||+||+|+||+++|.++++.+.+... ..++..+...
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 48899999999999999999999887 999999999999999999999876420 0112222211
Q ss_pred --------------------CCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc
Q psy12150 106 --------------------DDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET 165 (456)
Q Consensus 106 --------------------~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~ 165 (456)
....++.+++....+...+.. +++||+|||++|.|+.++.++|+++||+|+
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~---------~~~kVvII~~ae~m~~~aaNaLLK~LEEPp 152 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLE---------APRKVVVIEDAETMNEAAANALLKTLEEPG 152 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCccc---------CCceEEEEEchhhcCHHHHHHHHHHHhCCC
Confidence 011234555544444333333 378999999999999999999999999999
Q ss_pred CcceEEEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy12150 166 KSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242 (456)
Q Consensus 166 ~~~~lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~ 242 (456)
.++||++++.+.++.++++|||+.++|.+++.+++.+||...+..++.. .....++..++|+++.+++.++..
T Consensus 153 -~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~~~~l~~~a~Gs~~~al~~l~~~ 225 (314)
T PRK07399 153 -NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN---INFPELLALAQGSPGAAIANIEQL 225 (314)
T ss_pred -CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch---hHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999876433322 235678999999999999988654
No 68
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=99.89 E-value=8.8e-21 Score=184.70 Aligned_cols=277 Identities=14% Similarity=0.107 Sum_probs=214.0
Q ss_pred HHHHHHHHhcCC-ccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH-HHHHHHHH
Q psy12150 82 TMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-AAQAALRR 159 (456)
Q Consensus 82 ~a~~l~~~l~~~-~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~-~~~~~Ll~ 159 (456)
.+.++++.+..+ ..+++++.+++.+. ..+.+ ...+...+.+ +++++|+|++++.+.. ...+.|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~l---~~~~~~~slf---------~~~kliii~~~~~~~~~~~~~~L~~ 69 (302)
T TIGR01128 3 AADAIRAAALAQGFDEFNVFRIDGEEF-DWNQL---LEEAQTLPLF---------SERRLVELRNPEGKPGAKGLKALEE 69 (302)
T ss_pred HHHHHHHHHHhCCCchheeeeeccCCC-CHHHH---HHHhhccCcc---------cCCeEEEEECCCCCCCHHHHHHHHH
Confidence 355566655433 23467787777652 22322 2333333333 2678999999999864 56788999
Q ss_pred HHHhccCcceEEEEecCcc---ccccccc--CCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Q psy12150 160 TMEKETKSTRFCLICNYVS---CIIQPLT--SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234 (456)
Q Consensus 160 ~le~~~~~~~lIl~~~~~~---kl~~~l~--~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~ 234 (456)
+++++++++++|+.++... ++.+.+. ++|..+.|.+++..++..|+...+++.|+.+++++++.|+..++||++.
T Consensus 70 ~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~ 149 (302)
T TIGR01128 70 YLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLA 149 (302)
T ss_pred HHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHH
Confidence 9999988888888876432 2223333 4899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHH----HHHHHHHHH
Q psy12150 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF----DQFHDIVML 307 (456)
Q Consensus 235 ~~~~L~~~~~~~~~~~It~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~~~ 307 (456)
+.+++++++.|.+++.||.++|..++....+.++|+++++ ++..+++..++.++.+|++|..++ ++|+.++
T Consensus 150 l~~el~KL~~~~~~~~It~e~I~~~~~~~~~~~if~l~dal~~~~~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~L~-- 227 (302)
T TIGR01128 150 IAQELEKLALYAPDGKITLEDVEEAVSDSARFNVFDLTDALLEGKAARALRILKGLLGEGEEPLILLALLQRQLRLLL-- 227 (302)
T ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH--
Confidence 9999999999987678999999999999999999999999 899999999999999999998877 5556655
Q ss_pred HhcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHH
Q psy12150 308 ASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIED 387 (456)
Q Consensus 308 ~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (456)
.++.
T Consensus 228 ----------------------------------------------------------------------------~~k~ 231 (302)
T TIGR01128 228 ----------------------------------------------------------------------------QLKR 231 (302)
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 3444
Q ss_pred HHHcCCCHHHHHHHH-------HHHHhcCCCCCHHHHHHHHHHHHHHHhhhh-c-CCChhHHHHHHHHHHH
Q psy12150 388 LILEAYSATQLFDQF-------HDIVMSASSLSDKQKALILEKLAECNARLQ-D-GASEYIQILDLGSIVI 449 (456)
Q Consensus 388 l~~~g~s~~di~~~l-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~-g~~~~~ql~~l~~~~~ 449 (456)
+..+|++..++...+ ..+......++.....+++..|.++|+.++ + +.+..+-+..++..+|
T Consensus 232 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~L~~~l~~l~~~d~~~K~~~~~~~~~~le~~i~~~~ 302 (302)
T TIGR01128 232 LAQQGGPLAQLASKLGIWPYRRKLALKALRRLSLAKLEQALQELAEADLQLKGTGGGDPWLALERLLLKLA 302 (302)
T ss_pred HHHcCCCHHHHHHHcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHhC
Confidence 455566655555543 122223347899999999999999999999 3 5777777777776653
No 69
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.88 E-value=2.8e-20 Score=181.44 Aligned_cols=177 Identities=25% Similarity=0.313 Sum_probs=148.3
Q ss_pred cHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc-------------------ccceEEeeCC---C
Q psy12150 50 QQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY-------------------RERILELNAS---D 106 (456)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~-------------------~~~~~e~n~~---~ 106 (456)
++..-+.+.+.+.+++.+| +||+||+|+||+++|.++++.+.+... ..++..+... .
T Consensus 7 l~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (334)
T PRK07993 7 LRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKS 86 (334)
T ss_pred ChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccc
Confidence 4455678899999999999 999999999999999999999976211 1134444332 2
Q ss_pred CcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccC
Q psy12150 107 DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186 (456)
Q Consensus 107 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~ 186 (456)
..+++.+++....+...+..+ ++||+|||++|.|+.++.++|++.||+|++.++||++++.+.++.++++|
T Consensus 87 ~I~idqiR~l~~~~~~~~~~g---------~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 87 SLGVDAVREVTEKLYEHARLG---------GAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred cCCHHHHHHHHHHHhhccccC---------CceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 357788888877777665543 78999999999999999999999999999999999999999999999999
Q ss_pred CceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q psy12150 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240 (456)
Q Consensus 187 r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~ 240 (456)
||+.+.|++++.+++..||... ..++++.+..++..++|++..++..++
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~-----~~~~~~~a~~~~~la~G~~~~Al~l~~ 206 (334)
T PRK07993 158 RCRLHYLAPPPEQYALTWLSRE-----VTMSQDALLAALRLSAGAPGAALALLQ 206 (334)
T ss_pred ccccccCCCCCHHHHHHHHHHc-----cCCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 9999999999999999999742 247777788899999999999988774
No 70
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.88 E-value=2.1e-21 Score=191.48 Aligned_cols=189 Identities=22% Similarity=0.348 Sum_probs=153.6
Q ss_pred cCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccc---------------------
Q psy12150 39 YRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYR--------------------- 96 (456)
Q Consensus 39 y~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~--------------------- 96 (456)
.+|+++++++||+.+++.|.+.+.+++.+| +||+||+|+||+++|.++++.+.++...
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 689999999999999999999999999999 9999999999999999999999753210
Q ss_pred --------cceEEeeC--CC-------CcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHH
Q psy12150 97 --------ERILELNA--SD-------DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRR 159 (456)
Q Consensus 97 --------~~~~e~n~--~~-------~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~ 159 (456)
.++..+.. .+ ...++.+++....+...+.. ++++||||||+|.++.+.++.|++
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~---------~~~kVviIDead~m~~~aanaLLK 163 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAE---------GGWRVVIVDTADEMNANAANALLK 163 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCccc---------CCCEEEEEechHhcCHHHHHHHHH
Confidence 02223322 11 12345555554443322221 267899999999999999999999
Q ss_pred HHHhccCcceEEEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q psy12150 160 TMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239 (456)
Q Consensus 160 ~le~~~~~~~lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L 239 (456)
.+++++..++||++++.+..+.+.+++||..+.|.+++.+++..||.... ...+++.+..++..++|+++.+++.+
T Consensus 164 ~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~----~~~~~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 164 VLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG----PDLPDDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred HHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc----ccCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998643 34556666889999999999999887
Q ss_pred H
Q psy12150 240 Q 240 (456)
Q Consensus 240 ~ 240 (456)
+
T Consensus 240 ~ 240 (365)
T PRK07471 240 G 240 (365)
T ss_pred c
Confidence 5
No 71
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.88 E-value=1.3e-21 Score=177.07 Aligned_cols=165 Identities=28% Similarity=0.433 Sum_probs=135.7
Q ss_pred HHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCC---------------------ccccceEEeeCCCCcChHH
Q psy12150 55 SVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGD---------------------MYRERILELNASDDRGIQV 112 (456)
Q Consensus 55 ~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~---------------------~~~~~~~e~n~~~~~~~~~ 112 (456)
+.|.+.++.++.++ ||||||+|+|||++++.+++.+.+. ..++.++..+.. ..+.+.
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~-~~~~~~ 80 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ-SIKVDQ 80 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC-cCCHHH
Confidence 45788888999888 9999999999999999999998753 111122222221 245667
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccCCceEEE
Q psy12150 113 IRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192 (456)
Q Consensus 113 i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~r~~~i~ 192 (456)
+++.+..+...+.. +++++|||||+|.++.+.++.|+++|+++++.++||++++...++.+++++||..++
T Consensus 81 i~~i~~~~~~~~~~---------~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~ 151 (188)
T TIGR00678 81 VRELVEFLSRTPQE---------SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLP 151 (188)
T ss_pred HHHHHHHHccCccc---------CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEee
Confidence 77666655544433 278899999999999999999999999999999999999988899999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Q psy12150 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRA 235 (456)
Q Consensus 193 f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~ 235 (456)
|.+++.+++.+|+... | +++++++.++..++||+|.+
T Consensus 152 ~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 152 FPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred CCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 9999999999999876 4 78999999999999999864
No 72
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.88 E-value=3.3e-21 Score=187.96 Aligned_cols=201 Identities=18% Similarity=0.209 Sum_probs=157.6
Q ss_pred CCcccccccHHHHHHHHHHHh-----cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHH
Q psy12150 42 KTIDDVIEQQEVVSVLKKCLS-----GADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK 116 (456)
Q Consensus 42 ~~~~~ivg~~~~~~~l~~~l~-----~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~ 116 (456)
++|++++|+++.++.|..++. .+.+++++|+||||+|||++++++++.+..+ +...+.........+...
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~-----~~~~~~~~~~~~~~l~~~ 75 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN-----LKITSGPALEKPGDLAAI 75 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC-----EEEeccchhcCchhHHHH
Confidence 479999999999999999886 3445669999999999999999999987542 333333322223333333
Q ss_pred HHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc------------------CcceEEEEecCcc
Q psy12150 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET------------------KSTRFCLICNYVS 178 (456)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~------------------~~~~lIl~~~~~~ 178 (456)
+.... ...++||||++.+.+..++.|+..+++.. +..++|.+++...
T Consensus 76 l~~~~---------------~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~ 140 (305)
T TIGR00635 76 LTNLE---------------EGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAG 140 (305)
T ss_pred HHhcc---------------cCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCcc
Confidence 22210 22399999999999988888888876432 2256777777778
Q ss_pred cccccccCCce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh---CCCCCCHH
Q psy12150 179 CIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK---GGEGIVNE 254 (456)
Q Consensus 179 kl~~~l~~r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~---~~~~It~~ 254 (456)
++.+++.+||. .++|.+++.+++.++++..+...+..+++++++.|++.++|++|.+.+.++.+..++ +...|+.+
T Consensus 141 ~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~ 220 (305)
T TIGR00635 141 MLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRD 220 (305)
T ss_pred ccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHH
Confidence 88889999995 679999999999999999999999999999999999999999999999998876554 34669999
Q ss_pred HHHHHhCC
Q psy12150 255 DVLEVTGV 262 (456)
Q Consensus 255 ~v~~~~~~ 262 (456)
.+...+..
T Consensus 221 ~v~~~l~~ 228 (305)
T TIGR00635 221 IALKALEM 228 (305)
T ss_pred HHHHHHHH
Confidence 98877643
No 73
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.88 E-value=4.4e-21 Score=175.10 Aligned_cols=209 Identities=19% Similarity=0.224 Sum_probs=165.8
Q ss_pred cchhccCCCCcccccccHHHHHHHHHHHh-----cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCc
Q psy12150 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLS-----GADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (456)
Q Consensus 34 ~w~eky~P~~~~~ivg~~~~~~~l~~~l~-----~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~ 108 (456)
..-...||++|++++||+++++.+.-+++ +..+.|+|||||||.||||+|..++++++.+ +...++.-..
T Consensus 15 ~~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn-----~k~tsGp~le 89 (332)
T COG2255 15 KIERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN-----LKITSGPALE 89 (332)
T ss_pred hhhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC-----eEeccccccc
Confidence 34557899999999999999999987774 3446679999999999999999999998642 2222222222
Q ss_pred ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc------------------CcceE
Q psy12150 109 GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET------------------KSTRF 170 (456)
Q Consensus 109 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~------------------~~~~l 170 (456)
...++...+..+ .+..|+||||+|++++...+.|...||++. +...+
T Consensus 90 K~gDlaaiLt~L---------------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 90 KPGDLAAILTNL---------------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred ChhhHHHHHhcC---------------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 233333333222 145699999999999999999999998742 12336
Q ss_pred EEEecCcccccccccCCce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh---
Q psy12150 171 CLICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--- 246 (456)
Q Consensus 171 Il~~~~~~kl~~~l~~r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~--- 246 (456)
|-+++....+..+|+.|+. ..++.-++.+++..++.+-+..-++.+++++..+|++++.|.+|-+.+.|..+..++
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V~ 234 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQVK 234 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHHHHHHHh
Confidence 6667777888999999987 788899999999999999999999999999999999999999999999999987777
Q ss_pred CCCCCCHHHHHHHhCC
Q psy12150 247 GGEGIVNEDVLEVTGV 262 (456)
Q Consensus 247 ~~~~It~~~v~~~~~~ 262 (456)
+...|+.+-+..++..
T Consensus 235 ~~~~I~~~ia~~aL~~ 250 (332)
T COG2255 235 GDGDIDRDIADKALKM 250 (332)
T ss_pred cCCcccHHHHHHHHHH
Confidence 5678888777666543
No 74
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.87 E-value=4.8e-19 Score=172.43 Aligned_cols=171 Identities=22% Similarity=0.314 Sum_probs=139.4
Q ss_pred HHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc-------------------ccceEEeeCC---CCcChHHH
Q psy12150 57 LKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY-------------------RERILELNAS---DDRGIQVI 113 (456)
Q Consensus 57 l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~-------------------~~~~~e~n~~---~~~~~~~i 113 (456)
.++.+..++.+| |||+||+|+||+++|+.+++.+.+... ..++..+... ...+++.+
T Consensus 12 ~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~i 91 (328)
T PRK05707 12 WQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQV 91 (328)
T ss_pred HHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHH
Confidence 344555688888 999999999999999999999986321 1134444332 24577888
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccCCceEEEe
Q psy12150 114 RDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193 (456)
Q Consensus 114 ~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~r~~~i~f 193 (456)
++....+...+..+ ++||+|||++|.|+.++.++|++.||+|+++++||++++.+..+.++++|||+.+.|
T Consensus 92 R~l~~~~~~~~~~~---------~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~ 162 (328)
T PRK05707 92 RELVSFVVQTAQLG---------GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQAC 162 (328)
T ss_pred HHHHHHHhhccccC---------CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeC
Confidence 88777666555443 788999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q psy12150 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240 (456)
Q Consensus 194 ~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~ 240 (456)
.+++.+++.+||..... ..+++....++..++|++..++..++
T Consensus 163 ~~~~~~~~~~~L~~~~~----~~~~~~~~~~l~la~Gsp~~A~~l~~ 205 (328)
T PRK05707 163 PLPSNEESLQWLQQALP----ESDERERIELLTLAGGSPLRALQLHE 205 (328)
T ss_pred CCcCHHHHHHHHHHhcc----cCChHHHHHHHHHcCCCHHHHHHHHC
Confidence 99999999999986531 34667777888999999998887653
No 75
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=99.86 E-value=4.5e-19 Score=174.28 Aligned_cols=299 Identities=19% Similarity=0.204 Sum_probs=224.0
Q ss_pred HHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCC
Q psy12150 56 VLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134 (456)
Q Consensus 56 ~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 134 (456)
++...+.+++.++ |++||+.-.-....+..+.+....+.........+..+ .+....+......+.++
T Consensus 5 ~~~~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~lF~------- 73 (334)
T COG1466 5 ELAKHLKKKNLMPVYLLYGEDEGLLEEAADAILKRALADGFDENYSFFDDSE----LDWADLLSELESPSLFG------- 73 (334)
T ss_pred HHHHHHhcCCCccEEEEecCChhHHHHHHHHHHHHHhccchhhHHhhccccc----CCHHHHHHHhhcccccc-------
Confidence 4556666654444 99999998888888888888776333333333322222 12233344444444443
Q ss_pred CCCcEEEEEcCCCCcc-HHHHHHHHHHHHhcc-CcceEEEEecCc---ccccc---cccCCceEEEecCCCHHHHHHHHH
Q psy12150 135 CPPFKIVILDEADSMT-HAAQAALRRTMEKET-KSTRFCLICNYV---SCIIQ---PLTSRCSKFRFKPLAENTMLTRLQ 206 (456)
Q Consensus 135 ~~~~~iviIDE~d~l~-~~~~~~Ll~~le~~~-~~~~lIl~~~~~---~kl~~---~l~~r~~~i~f~~~~~~el~~~l~ 206 (456)
++++|+|+...... .+....+......++ ..+++++.++.. .+..+ .+.. +..+.+.+++..++.+|+.
T Consensus 74 --~~~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~-~~~~~~~~~~~~~l~~~i~ 150 (334)
T COG1466 74 --EKRLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAK-AVVVECKPLDEAELPQWIK 150 (334)
T ss_pred --CCeeEEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhcc-CceEecCCCCHHHHHHHHH
Confidence 66799999998876 344444555555555 445555444432 22323 3333 6689999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHH
Q psy12150 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKY 283 (456)
Q Consensus 207 ~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~ 283 (456)
.++++.|+.+++++++.|+...+||++.+.+++++++.|++++.||.++|..++......++|+++++ |+..+|...
T Consensus 151 ~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~a~~~ 230 (334)
T COG1466 151 KRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVKKALRL 230 (334)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999997669999999999999999999999999 999999999
Q ss_pred HHHHHHhccCHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchh
Q psy12150 284 IEDLILEAYSATQLF----DQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 359 (456)
Q Consensus 284 ~~~l~~~~~~~~~i~----~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~ 359 (456)
+++|+.+|++|+.|+ +||+.++
T Consensus 231 l~~L~~~ge~p~~il~~l~~~f~~~~------------------------------------------------------ 256 (334)
T COG1466 231 LRDLLLEGEEPLKLLAALTRQFRLLL------------------------------------------------------ 256 (334)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHH------------------------------------------------------
Confidence 999999999999987 6777555
Q ss_pred cccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHH---------HHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy12150 360 VTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQF---------HDIVMSASSLSDKQKALILEKLAECNAR 430 (456)
Q Consensus 360 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l---------~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 430 (456)
.++.+..+|++...++..+ ..... ..++.....+.+..++++|+.
T Consensus 257 ------------------------~l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~--~r~s~~~l~~~l~~l~~~d~~ 310 (334)
T COG1466 257 ------------------------QLKALAEKGKSLQQAAKSLGIPYRRKKLFKKAA--RRLSLKQLLKALRLLAQLDYQ 310 (334)
T ss_pred ------------------------HHHHHHHcCcCHHHHHHHhcCcHHHHHHHHHHH--HHcCHHHHHHHHHHHHHHHHH
Confidence 5777788888888888887 22222 248999999999999999999
Q ss_pred hhcCCChhH-HHHHHHHHH
Q psy12150 431 LQDGASEYI-QILDLGSIV 448 (456)
Q Consensus 431 l~~g~~~~~-ql~~l~~~~ 448 (456)
+++|..++. -+...+..+
T Consensus 311 ~K~~~~d~~~~l~~~l~~~ 329 (334)
T COG1466 311 IKTGYGDPVWALELFLLRL 329 (334)
T ss_pred HhcCCccchHHHHHHHHHH
Confidence 999986444 444444443
No 76
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.86 E-value=3.9e-19 Score=171.69 Aligned_cols=178 Identities=22% Similarity=0.303 Sum_probs=145.1
Q ss_pred ccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc-------------------ccceEEeeC--CC
Q psy12150 49 EQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY-------------------RERILELNA--SD 106 (456)
Q Consensus 49 g~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~-------------------~~~~~e~n~--~~ 106 (456)
.+....+.+.+.+.+++.+| |||+||+|+||+++|+.+++.+.+... ..++..+.. ..
T Consensus 6 W~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~ 85 (325)
T PRK06871 6 WLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNK 85 (325)
T ss_pred chHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCC
Confidence 34555678999999999999 999999999999999999999976321 113444433 23
Q ss_pred CcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccC
Q psy12150 107 DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186 (456)
Q Consensus 107 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~ 186 (456)
..+++.+++....+...+..+ ++||+|||++|.|+.++.++|++.||+|+++++||++++.+.++.++++|
T Consensus 86 ~I~id~iR~l~~~~~~~~~~g---------~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 86 DIGVDQVREINEKVSQHAQQG---------GNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred CCCHHHHHHHHHHHhhccccC---------CceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 457788888776666555443 78899999999999999999999999999999999999999999999999
Q ss_pred CceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q psy12150 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240 (456)
Q Consensus 187 r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~ 240 (456)
||+.+.|.+++.+++.+||.... ..++..+..++..++|.+..++..++
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~ 205 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLE 205 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhh
Confidence 99999999999999999998653 23444566778889999987766653
No 77
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.85 E-value=3.5e-18 Score=163.57 Aligned_cols=175 Identities=14% Similarity=0.192 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCC--------ccccceEEeeC-CCCcChHHHHHHHHHH
Q psy12150 51 QEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGD--------MYRERILELNA-SDDRGIQVIRDKVKTF 120 (456)
Q Consensus 51 ~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~--------~~~~~~~e~n~-~~~~~~~~i~~~l~~~ 120 (456)
..+++.+++.++.++.+| |||+|++|+||+.+++.+++.+.+. ..+.++..++. ....+.+.+++....+
T Consensus 2 ~~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~ 81 (299)
T PRK07132 2 NNWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKL 81 (299)
T ss_pred chHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHh
Confidence 356788999999999999 9999999999999999999998542 22334455542 1234566777666665
Q ss_pred HHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccCCceEEEecCCCHHH
Q psy12150 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200 (456)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~e 200 (456)
...+... +++||+|||+++.++.+++++|+++||+||++++||++++.+.++.++++|||+.++|.+++.++
T Consensus 82 ~~~~~~~--------~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~ 153 (299)
T PRK07132 82 YFSSFVQ--------SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQK 153 (299)
T ss_pred ccCCccc--------CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHH
Confidence 4443221 27889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q psy12150 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240 (456)
Q Consensus 201 l~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~ 240 (456)
+..||... + ++++....++..++| +.+++..+.
T Consensus 154 l~~~l~~~----~--~~~~~a~~~a~~~~~-~~~a~~~~~ 186 (299)
T PRK07132 154 ILAKLLSK----N--KEKEYNWFYAYIFSN-FEQAEKYIN 186 (299)
T ss_pred HHHHHHHc----C--CChhHHHHHHHHcCC-HHHHHHHHh
Confidence 99998743 2 677777778877774 888888753
No 78
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.83 E-value=2e-19 Score=187.12 Aligned_cols=211 Identities=20% Similarity=0.287 Sum_probs=138.7
Q ss_pred CCCCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-----EEEECCCCCcHHHHHHHHHHHhcCCccc-cceE-E
Q psy12150 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-----FLFYGPPGTGKTSTMIAACHQLFGDMYR-ERIL-E 101 (456)
Q Consensus 29 ~~~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-----~Ll~G~~G~GKT~~a~~l~~~l~~~~~~-~~~~-e 101 (456)
.+...||++||+|+++++++|+++.+..++.|+.....+. ++|+||+|+|||++++.+++.+...... .+.+ .
T Consensus 68 ~~~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~ 147 (637)
T TIGR00602 68 LDGNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLP 147 (637)
T ss_pred ccccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhh
Confidence 3456799999999999999999999999999998655432 9999999999999999999987543211 0100 0
Q ss_pred eeCCC---------------CcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH---HHHHHHH--HH
Q psy12150 102 LNASD---------------DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA---AQAALRR--TM 161 (456)
Q Consensus 102 ~n~~~---------------~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~---~~~~Ll~--~l 161 (456)
.+..+ ....+.+...+....... ... .+.....++||+|||++.+... .+..+++ +.
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~-~~~--g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~ 224 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKL-QML--GDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYV 224 (637)
T ss_pred cccccccccchhhhhccccccchHHHHHHHHHHHHhhh-ccc--ccccCCceeEEEeecchhhchhhHHHHHHHHHHHhh
Confidence 00000 011122222222211000 000 0001136779999999877543 2333444 33
Q ss_pred HhccCcceEEEEecCc--------cc-------ccccccC--CceEEEecCCCHHHHHHHHHHHHHHcCCC------C-C
Q psy12150 162 EKETKSTRFCLICNYV--------SC-------IIQPLTS--RCSKFRFKPLAENTMLTRLQYICEQESVM------C-D 217 (456)
Q Consensus 162 e~~~~~~~lIl~~~~~--------~k-------l~~~l~~--r~~~i~f~~~~~~el~~~l~~~~~~~~~~------i-~ 217 (456)
+. ..+.+|+++++. .. +.+++.+ |+..|.|+|++..++.+.|..++..++.. + +
T Consensus 225 e~--~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~ 302 (637)
T TIGR00602 225 SI--GRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPK 302 (637)
T ss_pred cC--CCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCC
Confidence 32 234455555421 11 2257776 56689999999999999999999876532 2 4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy12150 218 FKALETLVETSGGDMRRAITCLQSCAR 244 (456)
Q Consensus 218 ~~~l~~L~~~s~gdlr~~~~~L~~~~~ 244 (456)
+++++.|+..++||+|.|++.||.++.
T Consensus 303 ~~~l~~I~~~s~GDiRsAIn~LQf~~~ 329 (637)
T TIGR00602 303 KTSVELLCQGCSGDIRSAINSLQFSSS 329 (637)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHh
Confidence 689999999999999999999999864
No 79
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.82 E-value=4.9e-19 Score=170.76 Aligned_cols=177 Identities=23% Similarity=0.316 Sum_probs=142.7
Q ss_pred ccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccc----------------cceEEee--CCC---
Q psy12150 49 EQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYR----------------ERILELN--ASD--- 106 (456)
Q Consensus 49 g~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~----------------~~~~e~n--~~~--- 106 (456)
.++...+.+...+.+++.+| +||+||+|+||+++|.++++.+.+.... .++..+. ...
T Consensus 8 W~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~ 87 (319)
T PRK08769 8 WQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGD 87 (319)
T ss_pred cHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccc
Confidence 45677888999999999999 9999999999999999999998764210 1233332 211
Q ss_pred ----CcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccc
Q psy12150 107 ----DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQ 182 (456)
Q Consensus 107 ----~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~ 182 (456)
..+++.+++....+...+..+ ++||+|||++|.|+.++.++|++.||+|+++++||++++.+.++.+
T Consensus 88 k~~~~I~idqIR~l~~~~~~~p~~g---------~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLp 158 (319)
T PRK08769 88 KLRTEIVIEQVREISQKLALTPQYG---------IAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPA 158 (319)
T ss_pred cccccccHHHHHHHHHHHhhCcccC---------CcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCch
Confidence 123566666655554444332 6889999999999999999999999999999999999999999999
Q ss_pred cccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q psy12150 183 PLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240 (456)
Q Consensus 183 ~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~ 240 (456)
+|+|||+.+.|.+++.+++..||.. .+ ++++.+..++..++|.+..++..++
T Consensus 159 TIrSRCq~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~~~~ 210 (319)
T PRK08769 159 TIRSRCQRLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQWLR 210 (319)
T ss_pred HHHhhheEeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHHHhc
Confidence 9999999999999999999999974 23 5666677789999999998877763
No 80
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.82 E-value=1e-18 Score=163.28 Aligned_cols=200 Identities=15% Similarity=0.197 Sum_probs=145.2
Q ss_pred Cccccc--ccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHH
Q psy12150 43 TIDDVI--EQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120 (456)
Q Consensus 43 ~~~~iv--g~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~ 120 (456)
+|++++ ++...+..+.++......++++||||+|+|||++++++++.+..... .+.+++...... ...+.++.+
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~v~y~~~~~~~~--~~~~~~~~~ 95 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGR--AVGYVPLDKRAW--FVPEVLEGM 95 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC--eEEEEEHHHHhh--hhHHHHHHh
Confidence 677777 46777888888887666667999999999999999999998764433 333333322110 011111111
Q ss_pred HHhhccCCCCCCCCCCCcEEEEEcCCCCccH--HHHHHHHHHHHhc--cCcceEEEEecCc-c---cccccccCCc---e
Q psy12150 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTH--AAQAALRRTMEKE--TKSTRFCLICNYV-S---CIIQPLTSRC---S 189 (456)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~--~~~~~Ll~~le~~--~~~~~lIl~~~~~-~---kl~~~l~~r~---~ 189 (456)
. ...+|+|||++.+.. ..+..|...+... .....+|++++.+ . .+.+.|+||+ .
T Consensus 96 ~---------------~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~ 160 (235)
T PRK08084 96 E---------------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQ 160 (235)
T ss_pred h---------------hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCc
Confidence 1 123899999999864 3344444444332 2234566677643 2 2578999998 6
Q ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh--hCCCCCCHHHHHHHhC
Q psy12150 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL--KGGEGIVNEDVLEVTG 261 (456)
Q Consensus 190 ~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~--~~~~~It~~~v~~~~~ 261 (456)
++++.+|+.+++.+++++.+..+|+.++++++++|++.++||+|.+++.++.+... ..++.||.+.+++++.
T Consensus 161 ~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 161 IYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 234 (235)
T ss_pred eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence 99999999999999999989999999999999999999999999999999997543 3567899999988764
No 81
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.82 E-value=2.3e-19 Score=157.65 Aligned_cols=140 Identities=33% Similarity=0.576 Sum_probs=108.7
Q ss_pred ccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc------------------ccceEEeeCCCC--
Q psy12150 49 EQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY------------------RERILELNASDD-- 107 (456)
Q Consensus 49 g~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~------------------~~~~~e~n~~~~-- 107 (456)
||+.+++.|.+.++.++.+| |||+||+|+||+++|..+++.+.+... ..++..++....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 78999999999999999999 999999999999999999999986432 235566665543
Q ss_pred -cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccC
Q psy12150 108 -RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186 (456)
Q Consensus 108 -~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~ 186 (456)
...+.+++....+...+.. +++||+||||+|.|+.+++++|++.||+|+.+++||++++++.++.++++|
T Consensus 81 ~i~i~~ir~i~~~~~~~~~~---------~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~S 151 (162)
T PF13177_consen 81 SIKIDQIREIIEFLSLSPSE---------GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRS 151 (162)
T ss_dssp SBSHHHHHHHHHHCTSS-TT---------SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHT
T ss_pred hhhHHHHHHHHHHHHHHHhc---------CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHh
Confidence 4667777555554433322 378999999999999999999999999999999999999999999999999
Q ss_pred CceEEEecCCC
Q psy12150 187 RCSKFRFKPLA 197 (456)
Q Consensus 187 r~~~i~f~~~~ 197 (456)
||..+.|++++
T Consensus 152 Rc~~i~~~~ls 162 (162)
T PF13177_consen 152 RCQVIRFRPLS 162 (162)
T ss_dssp TSEEEEE----
T ss_pred hceEEecCCCC
Confidence 99999999875
No 82
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.82 E-value=3.2e-18 Score=177.93 Aligned_cols=235 Identities=19% Similarity=0.223 Sum_probs=166.0
Q ss_pred hccCCCCcccccccHHHHHHHHHHHh----cCCCCe-EEEECCCCCcHHHHHHHHHHHhcC-----CccccceEEeeCCC
Q psy12150 37 EKYRPKTIDDVIEQQEVVSVLKKCLS----GADLPH-FLFYGPPGTGKTSTMIAACHQLFG-----DMYRERILELNASD 106 (456)
Q Consensus 37 eky~P~~~~~ivg~~~~~~~l~~~l~----~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~-----~~~~~~~~e~n~~~ 106 (456)
..|.| +.+.+++..++.|..++. +....+ ++|+|+||||||.+++.+.+++.. ....+.++++||..
T Consensus 750 ~DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 750 LDVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred cccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 44666 467899998887776654 333334 579999999999999999988742 11235789999976
Q ss_pred CcChHHHHHHHHHHH-Hhhc-cCC----------CCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhc---cCcceEE
Q psy12150 107 DRGIQVIRDKVKTFA-QQTA-SGF----------NQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE---TKSTRFC 171 (456)
Q Consensus 107 ~~~~~~i~~~l~~~~-~~~~-~~~----------~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~---~~~~~lI 171 (456)
......+...+.... .... .+. ...........||||||+|.|....++.|+.+++.+ ...+++|
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLI 906 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLI 906 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEE
Confidence 555544433332111 0000 000 000000012348999999999876677777666543 3346677
Q ss_pred EEecC---cccccccccCCce--EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HcCCCHHHHHHHHHHHH
Q psy12150 172 LICNY---VSCIIQPLTSRCS--KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVE---TSGGDMRRAITCLQSCA 243 (456)
Q Consensus 172 l~~~~---~~kl~~~l~~r~~--~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~---~s~gdlr~~~~~L~~~~ 243 (456)
.++|. +..+.+.+++|+. .+.|+|++.+++.++|..++......+++++++++++ ..+||+|.|+..|+.++
T Consensus 907 GISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 907 AISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred EecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 77775 3566788888876 5999999999999999999986555689999999998 66899999999999998
Q ss_pred HhhCCCCCCHHHHHHHhCCCCHHHHHHHHcc
Q psy12150 244 RLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274 (456)
Q Consensus 244 ~~~~~~~It~~~v~~~~~~~~~~~i~~l~~~ 274 (456)
..+++..|+.++|.++......+.+.+.+..
T Consensus 987 EikegskVT~eHVrkAleeiE~srI~e~Ikt 1017 (1164)
T PTZ00112 987 ENKRGQKIVPRDITEATNQLFDSPLTNAINY 1017 (1164)
T ss_pred hhcCCCccCHHHHHHHHHHHHhhhHHHHHHc
Confidence 8777778999999998876655555555555
No 83
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.81 E-value=5.6e-17 Score=157.81 Aligned_cols=168 Identities=21% Similarity=0.281 Sum_probs=128.5
Q ss_pred HHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccc--------------------cceEEeeCC------
Q psy12150 53 VVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYR--------------------ERILELNAS------ 105 (456)
Q Consensus 53 ~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~--------------------~~~~e~n~~------ 105 (456)
..+++... .++.+| |||+||+|+||+++|+.+++.+.+.... .++..+...
T Consensus 9 ~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~ 86 (342)
T PRK06964 9 DWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEA 86 (342)
T ss_pred HHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccc
Confidence 33444443 457888 9999999999999999999999763210 122333211
Q ss_pred -----------------------CCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHH
Q psy12150 106 -----------------------DDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTME 162 (456)
Q Consensus 106 -----------------------~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le 162 (456)
...+++.+++....+...+.. +++||+|||++|.|+.++.++|++.||
T Consensus 87 ~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~---------~~~kV~iI~~ae~m~~~AaNaLLKtLE 157 (342)
T PRK06964 87 PGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHR---------GGARVVVLYPAEALNVAAANALLKTLE 157 (342)
T ss_pred cccccccccchhhcccccccccccccCHHHHHHHHHHhccCCcc---------CCceEEEEechhhcCHHHHHHHHHHhc
Confidence 123456666655544433322 378899999999999999999999999
Q ss_pred hccCcceEEEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q psy12150 163 KETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239 (456)
Q Consensus 163 ~~~~~~~lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L 239 (456)
+|+++++||++++.+.++.++++|||+.+.|.+++.+++.+||... + +++. +.++..++|++..++..+
T Consensus 158 EPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~--~~~~--~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 158 EPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----G--VADA--DALLAEAGGAPLAALALA 226 (342)
T ss_pred CCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----C--CChH--HHHHHHcCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999753 3 3332 335777899999888776
No 84
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.81 E-value=5.8e-17 Score=156.25 Aligned_cols=175 Identities=16% Similarity=0.272 Sum_probs=140.2
Q ss_pred ccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc------------------ccceEEeeCC---C
Q psy12150 49 EQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY------------------RERILELNAS---D 106 (456)
Q Consensus 49 g~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~------------------~~~~~e~n~~---~ 106 (456)
.+....+.+.+.+.+++.+| |||+||+|+||+++|+.+++.+.+... ..++..+... .
T Consensus 7 Wl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (319)
T PRK06090 7 WLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGK 86 (319)
T ss_pred cHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCC
Confidence 34556678999999999999 999999999999999999999875321 1134444432 2
Q ss_pred CcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccC
Q psy12150 107 DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186 (456)
Q Consensus 107 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~ 186 (456)
..+++.+++........+.. +++||+|||++|.|+.++.++|++.||+|+++++||++++.+.++.++++|
T Consensus 87 ~I~vdqiR~l~~~~~~~~~~---------~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 87 SITVEQIRQCNRLAQESSQL---------NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred cCCHHHHHHHHHHHhhCccc---------CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 34667777655444444332 378899999999999999999999999999999999999999999999999
Q ss_pred CceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q psy12150 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240 (456)
Q Consensus 187 r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~ 240 (456)
||+.+.|.+++.+++.+||.. .|.. ....++..++|++..++..++
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~----~~~~----~~~~~l~l~~G~p~~A~~~~~ 203 (319)
T PRK06090 158 RCQQWVVTPPSTAQAMQWLKG----QGIT----VPAYALKLNMGSPLKTLAMMK 203 (319)
T ss_pred cceeEeCCCCCHHHHHHHHHH----cCCc----hHHHHHHHcCCCHHHHHHHhC
Confidence 999999999999999999874 3433 234667889999998887763
No 85
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.81 E-value=1.1e-17 Score=167.39 Aligned_cols=227 Identities=19% Similarity=0.209 Sum_probs=153.8
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHh----cCCCCeEEEECCCCCcHHHHHHHHHHHhcCC----ccccceEEeeC
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLS----GADLPHFLFYGPPGTGKTSTMIAACHQLFGD----MYRERILELNA 104 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~----~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~----~~~~~~~e~n~ 104 (456)
..+...|.|. +++|++..++.|..++. ++..++++|+||||+|||++++.+++.+... ..++.++++|+
T Consensus 6 ~~l~~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 6 DLLEPDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred hhCCCCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 4567789996 67999999988887775 3444569999999999999999999887431 12257888998
Q ss_pred CCCcChHHHHH-HHHHHHHhhccCCCCCCC--------------CCCCcEEEEEcCCCCccHHH---HHHHHHH--HHhc
Q psy12150 105 SDDRGIQVIRD-KVKTFAQQTASGFNQDGK--------------PCPPFKIVILDEADSMTHAA---QAALRRT--MEKE 164 (456)
Q Consensus 105 ~~~~~~~~i~~-~l~~~~~~~~~~~~~~~~--------------~~~~~~iviIDE~d~l~~~~---~~~Ll~~--le~~ 164 (456)
........+.. ....+...... ....+. ......+|||||+|.+.... ...|.+. ..+.
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~ 161 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEE-VPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDL 161 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCC-CCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCC
Confidence 77555433322 22222110000 000000 01234589999999995332 3334433 1222
Q ss_pred c-CcceEEEEecCcc---cccccccCCce--EEEecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHH---HcCCCHH
Q psy12150 165 T-KSTRFCLICNYVS---CIIQPLTSRCS--KFRFKPLAENTMLTRLQYICEQ--ESVMCDFKALETLVE---TSGGDMR 233 (456)
Q Consensus 165 ~-~~~~lIl~~~~~~---kl~~~l~~r~~--~i~f~~~~~~el~~~l~~~~~~--~~~~i~~~~l~~L~~---~s~gdlr 233 (456)
+ ..+.+|+++|.+. .+.+.+.+|+. .+.|+|++.+++.++++.+++. .+..+++++++.++. .+.||+|
T Consensus 162 ~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R 241 (365)
T TIGR02928 162 DNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDAR 241 (365)
T ss_pred CCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHH
Confidence 2 4567788887653 46667777874 7999999999999999999863 234588888777554 5579999
Q ss_pred HHHHHHHHHHHhh---CCCCCCHHHHHHHhCCC
Q psy12150 234 RAITCLQSCARLK---GGEGIVNEDVLEVTGVI 263 (456)
Q Consensus 234 ~~~~~L~~~~~~~---~~~~It~~~v~~~~~~~ 263 (456)
.+++.|+.++..+ +...||.++|..+....
T Consensus 242 ~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 242 KAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 9999999987765 34579999998877654
No 86
>PRK06893 DNA replication initiation factor; Validated
Probab=99.81 E-value=1.4e-18 Score=161.76 Aligned_cols=203 Identities=15% Similarity=0.210 Sum_probs=141.4
Q ss_pred CCCCcccccccHHH--HHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHH
Q psy12150 40 RPKTIDDVIEQQEV--VSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKV 117 (456)
Q Consensus 40 ~P~~~~~ivg~~~~--~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l 117 (456)
.+.+|+++++.+.. ...+.+....+..+.++||||||+|||++++++++++.....+..++..+...... .+.+
T Consensus 11 ~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~----~~~~ 86 (229)
T PRK06893 11 DDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFS----PAVL 86 (229)
T ss_pred CcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhh----HHHH
Confidence 35689999976543 23344444444344589999999999999999999875443332333332111110 1111
Q ss_pred HHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH--HHHHHHHHHHHhcc--CcceEEEEecCc-c---cccccccCCce
Q psy12150 118 KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--AAQAALRRTMEKET--KSTRFCLICNYV-S---CIIQPLTSRCS 189 (456)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~--~~~~~Ll~~le~~~--~~~~lIl~~~~~-~---kl~~~l~~r~~ 189 (456)
..+ ....+|+|||++.+.. ..+..|..+++... ...+++++++.. . ...+.+.+|+.
T Consensus 87 ~~~---------------~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~ 151 (229)
T PRK06893 87 ENL---------------EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLT 151 (229)
T ss_pred hhc---------------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHh
Confidence 111 1334999999998853 23445666555432 234456666643 2 23478999986
Q ss_pred ---EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCHHHHHHHhC
Q psy12150 190 ---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNEDVLEVTG 261 (456)
Q Consensus 190 ---~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~--~~~~It~~~v~~~~~ 261 (456)
.+++.+|+.++...++++.+...++.++++++++|++.++||+|.+++.++.+...+ .++.||.+.|++++.
T Consensus 152 ~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 152 WGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPFVKEILG 228 (229)
T ss_pred cCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999999999875432 467899999998764
No 87
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.80 E-value=5.3e-18 Score=158.15 Aligned_cols=200 Identities=17% Similarity=0.217 Sum_probs=150.7
Q ss_pred CCCCccccc--ccHHHHHHHHHHHhcC-CCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHH
Q psy12150 40 RPKTIDDVI--EQQEVVSVLKKCLSGA-DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK 116 (456)
Q Consensus 40 ~P~~~~~iv--g~~~~~~~l~~~l~~~-~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~ 116 (456)
+|.+|++++ +++..+..+..+.... ...+++|+||+|+|||+++++++++...... .+..+++.... ..
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~--~~~~i~~~~~~------~~ 84 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGR--NARYLDAASPL------LA 84 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC--cEEEEehHHhH------HH
Confidence 355788877 3467778888887743 3345999999999999999999998754333 45666654421 11
Q ss_pred HHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc--CcceEEEEecCcc---cccccccCCc---
Q psy12150 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET--KSTRFCLICNYVS---CIIQPLTSRC--- 188 (456)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~--~~~~lIl~~~~~~---kl~~~l~~r~--- 188 (456)
+ . .. ....+|+|||++.+....+..|..+++... ...+++++++... .+.+.+.+|+
T Consensus 85 ~---~---~~---------~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~ 149 (227)
T PRK08903 85 F---D---FD---------PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWG 149 (227)
T ss_pred H---h---hc---------ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcC
Confidence 1 0 00 123499999999999888888888886533 2334555555332 3446677775
Q ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCHHHHHHHhCC
Q psy12150 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNEDVLEVTGV 262 (456)
Q Consensus 189 ~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~--~~~~It~~~v~~~~~~ 262 (456)
..+++++++.++...++...+.+.++.+++++++.|++.++||+|.+.+.++.+..++ .++.||...+++++..
T Consensus 150 ~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~~~~~~~~~~i~~~~~~~~l~~ 225 (227)
T PRK08903 150 LVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLLREMLAQ 225 (227)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999999999999987665 5678999999998863
No 88
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.80 E-value=7.5e-17 Score=152.45 Aligned_cols=157 Identities=17% Similarity=0.205 Sum_probs=129.5
Q ss_pred HHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCc-----------cccceEEeeCCC---CcChHHHHHHH
Q psy12150 53 VVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM-----------YRERILELNASD---DRGIQVIRDKV 117 (456)
Q Consensus 53 ~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~-----------~~~~~~e~n~~~---~~~~~~i~~~l 117 (456)
.-+.|.+.+++++.+| |||+||+|+||+++|..+++.+.+.. ...++..+.... ..+++.+++..
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~ 84 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIK 84 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHH
Confidence 4567899999999999 99999999999999999999998632 112343343322 24677787777
Q ss_pred HHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccCCceEEEecCCC
Q psy12150 118 KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197 (456)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~r~~~i~f~~~~ 197 (456)
..+...+..+ ++||+|||++|.|+.+++++|++.||+|+++++||++++.+.++.++++|||+.+.|+++
T Consensus 85 ~~~~~~p~e~---------~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~- 154 (290)
T PRK05917 85 KQIWIHPYES---------PYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME- 154 (290)
T ss_pred HHHhhCccCC---------CceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch-
Confidence 7666555443 788999999999999999999999999999999999999999999999999999999886
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Q psy12150 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR 233 (456)
Q Consensus 198 ~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr 233 (456)
+...++++.+..++..++|+++
T Consensus 155 --------------~~~~i~~~~~~~l~~~~~g~~~ 176 (290)
T PRK05917 155 --------------EKTLVSKEDIAYLIGYAQGKES 176 (290)
T ss_pred --------------hccCCCHHHHHHHHHHhCCChh
Confidence 1224789999999999999986
No 89
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.80 E-value=3.8e-17 Score=165.18 Aligned_cols=229 Identities=21% Similarity=0.256 Sum_probs=156.8
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHH----hcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCL----SGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l----~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~ 107 (456)
..|+...|.|. .++|++..++.|...+ .++.+++++||||||+|||++++.+++.+........++++|+...
T Consensus 20 ~~~l~~~~~P~---~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 20 EEVLEPDYVPE---NLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred hhhCCCCCcCC---CCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 35666777774 5799999988887776 3345566999999999999999999998755433457888888765
Q ss_pred cChHHHHHHH-HHHHHhhccCCCCC-C----------CCCCCcEEEEEcCCCCcc----HHHHHHHHHHHHhccC-cceE
Q psy12150 108 RGIQVIRDKV-KTFAQQTASGFNQD-G----------KPCPPFKIVILDEADSMT----HAAQAALRRTMEKETK-STRF 170 (456)
Q Consensus 108 ~~~~~i~~~l-~~~~~~~~~~~~~~-~----------~~~~~~~iviIDE~d~l~----~~~~~~Ll~~le~~~~-~~~l 170 (456)
.....+...+ ..+........... . .......+|+|||+|.+. .+....|.+.++.... .+.+
T Consensus 97 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~v 176 (394)
T PRK00411 97 RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGV 176 (394)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEE
Confidence 5433322221 21111000000000 0 000133589999999986 2345555555554333 5667
Q ss_pred EEEecCc---ccccccccCCc--eEEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHc---CCCHHHHHHHHH
Q psy12150 171 CLICNYV---SCIIQPLTSRC--SKFRFKPLAENTMLTRLQYICEQE--SVMCDFKALETLVETS---GGDMRRAITCLQ 240 (456)
Q Consensus 171 Il~~~~~---~kl~~~l~~r~--~~i~f~~~~~~el~~~l~~~~~~~--~~~i~~~~l~~L~~~s---~gdlr~~~~~L~ 240 (456)
|++++.. ..+.+.+.+++ ..+.|+|++.+++.++++.+++.. ...+++++++.+++.+ .||+|.+++.|.
T Consensus 177 I~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~ 256 (394)
T PRK00411 177 IGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLR 256 (394)
T ss_pred EEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 8887754 23455566665 378999999999999999998753 3468999999999887 899999999998
Q ss_pred HHHHhh---CCCCCCHHHHHHHhCCC
Q psy12150 241 SCARLK---GGEGIVNEDVLEVTGVI 263 (456)
Q Consensus 241 ~~~~~~---~~~~It~~~v~~~~~~~ 263 (456)
.++..+ +...|+.++|..+....
T Consensus 257 ~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 257 RAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 877665 35679999998877655
No 90
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.80 E-value=3.7e-18 Score=162.35 Aligned_cols=190 Identities=18% Similarity=0.209 Sum_probs=136.2
Q ss_pred CcccccccHHHHHHHHHHHh----------c-----CCCCeEEEECCCCCcHHHHHHHHHHHhcCCc--cccceEEeeCC
Q psy12150 43 TIDDVIEQQEVVSVLKKCLS----------G-----ADLPHFLFYGPPGTGKTSTMIAACHQLFGDM--YRERILELNAS 105 (456)
Q Consensus 43 ~~~~ivg~~~~~~~l~~~l~----------~-----~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~--~~~~~~e~n~~ 105 (456)
.+++++|.+.+++.+++... . +...|++|+||||||||++|+.+++.+.... ....+++++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 36789999998877764421 1 1234599999999999999999999864311 12356666665
Q ss_pred CCcCh--HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCcc--------HHHHHHHHHHHHhccCcceEEEEec
Q psy12150 106 DDRGI--QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT--------HAAQAALRRTMEKETKSTRFCLICN 175 (456)
Q Consensus 106 ~~~~~--~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~--------~~~~~~Ll~~le~~~~~~~lIl~~~ 175 (456)
+..+. ......+........ ..||||||+|.|. .+.++.|++.+++....+++|+++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~------------~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~ 151 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL------------GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGY 151 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc------------CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCC
Confidence 42211 111122222222221 1299999999875 3467889999998877777777654
Q ss_pred Cc-----ccccccccCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----------cCCCHHHHHHHH
Q psy12150 176 YV-----SCIIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVET----------SGGDMRRAITCL 239 (456)
Q Consensus 176 ~~-----~kl~~~l~~r~-~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~----------s~gdlr~~~~~L 239 (456)
.. ..+.+++.+|+ ..++|++++.+++.++++..+...+..++++++..|++. +.||.|.+.|.+
T Consensus 152 ~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~ 231 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNII 231 (261)
T ss_pred cchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 32 23568899998 479999999999999999999999999999999988643 369999999999
Q ss_pred HHHHH
Q psy12150 240 QSCAR 244 (456)
Q Consensus 240 ~~~~~ 244 (456)
+.+..
T Consensus 232 e~a~~ 236 (261)
T TIGR02881 232 EKAIR 236 (261)
T ss_pred HHHHH
Confidence 88654
No 91
>PRK08727 hypothetical protein; Validated
Probab=99.79 E-value=6.6e-18 Score=157.62 Aligned_cols=211 Identities=17% Similarity=0.235 Sum_probs=147.7
Q ss_pred CcchhccCC-CCcccccccH-HHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcCh
Q psy12150 33 VPWVEKYRP-KTIDDVIEQQ-EVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI 110 (456)
Q Consensus 33 ~~w~eky~P-~~~~~ivg~~-~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~ 110 (456)
.|+--.++| .+|+++++.+ ..+..+.....+.....++|+||+|+|||+++++++.++..... .+.+++..+..
T Consensus 6 l~l~~~~~~~~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~--~~~y~~~~~~~-- 81 (233)
T PRK08727 6 LPLALRYPSDQRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGR--SSAYLPLQAAA-- 81 (233)
T ss_pred ccccCCCCCcCChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC--cEEEEeHHHhh--
Confidence 444444444 3788888654 44454554444433344999999999999999999988755433 44555433211
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCcc--HHHHHHHHHHHHhcc-CcceEEEEecCc-c---ccccc
Q psy12150 111 QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT--HAAQAALRRTMEKET-KSTRFCLICNYV-S---CIIQP 183 (456)
Q Consensus 111 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~--~~~~~~Ll~~le~~~-~~~~lIl~~~~~-~---kl~~~ 183 (456)
..+.+.+..+. ...+|+|||++.+. ...+..+.++++... ....+|++++.. . .+.+.
T Consensus 82 ~~~~~~~~~l~---------------~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 82 GRLRDALEALE---------------GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred hhHHHHHHHHh---------------cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHH
Confidence 11112222111 22399999999886 334556666665422 234466777643 2 34688
Q ss_pred ccCC---ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCHHHHHH
Q psy12150 184 LTSR---CSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNEDVLE 258 (456)
Q Consensus 184 l~~r---~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~--~~~~It~~~v~~ 258 (456)
+.+| +..++|++|+.+++..+++.++..+++.+++++++.|++.++||+|.+++.|+.+..++ .++.||.+.+++
T Consensus 147 L~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~~~~~it~~~~~~ 226 (233)
T PRK08727 147 LRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRVTVPFLRR 226 (233)
T ss_pred HHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 9999 77999999999999999999999999999999999999999999999999999876432 467899999988
Q ss_pred HhCC
Q psy12150 259 VTGV 262 (456)
Q Consensus 259 ~~~~ 262 (456)
++..
T Consensus 227 ~l~~ 230 (233)
T PRK08727 227 VLEE 230 (233)
T ss_pred HHhh
Confidence 8753
No 92
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.77 E-value=9.2e-18 Score=156.39 Aligned_cols=201 Identities=18% Similarity=0.230 Sum_probs=146.8
Q ss_pred CCCccccc--ccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHH
Q psy12150 41 PKTIDDVI--EQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVK 118 (456)
Q Consensus 41 P~~~~~iv--g~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~ 118 (456)
+.+|++++ +++..++.+++++......+++|+||+|||||++++++++....... .++++++..... ...
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~--~~~~i~~~~~~~------~~~ 82 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGK--SAIYLPLAELAQ------ADP 82 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCC--cEEEEeHHHHHH------hHH
Confidence 34677776 36778899999987666667999999999999999999998754322 466666654221 111
Q ss_pred HHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHH--HHHHHHHHHhcc-CcceEEEEecCc-cc--cc-ccccCCc---
Q psy12150 119 TFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA--QAALRRTMEKET-KSTRFCLICNYV-SC--II-QPLTSRC--- 188 (456)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~--~~~Ll~~le~~~-~~~~lIl~~~~~-~k--l~-~~l~~r~--- 188 (456)
.+.... ...++|+|||++.+.... ++.|...++... ....+|++++.. .. .. +.+.+|+
T Consensus 83 ~~~~~~-----------~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~ 151 (226)
T TIGR03420 83 EVLEGL-----------EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG 151 (226)
T ss_pred HHHhhc-----------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC
Confidence 111110 022499999999997633 677777665421 223566666643 22 22 5667775
Q ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCHHHHHHHh
Q psy12150 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNEDVLEVT 260 (456)
Q Consensus 189 ~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~--~~~~It~~~v~~~~ 260 (456)
..+.+++++.++...+++..+.+.++.+++++++.|++.++||+|.+.+.++.+..++ .++.||.+.+++++
T Consensus 152 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 152 LVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVL 225 (226)
T ss_pred eeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 4899999999999999999998889999999999999999999999999998876533 56789999998875
No 93
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.77 E-value=1.1e-17 Score=150.74 Aligned_cols=212 Identities=24% Similarity=0.296 Sum_probs=149.4
Q ss_pred chhccCCCCcccccccHHHHHH---HHHHHh------cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCC
Q psy12150 35 WVEKYRPKTIDDVIEQQEVVSV---LKKCLS------GADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (456)
Q Consensus 35 w~eky~P~~~~~ivg~~~~~~~---l~~~l~------~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~ 105 (456)
..+...-.+|+|++||++.++. +.++++ .+.+.++|||||||||||.+|++++++.. .+++.+++.
T Consensus 111 ~~e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k-----vp~l~vkat 185 (368)
T COG1223 111 DREIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK-----VPLLLVKAT 185 (368)
T ss_pred hhhhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC-----CceEEechH
Confidence 3455666799999999998865 445554 35566799999999999999999999863 356666665
Q ss_pred CCcCh--HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH------------HHHHHHHHHHHh--ccCcce
Q psy12150 106 DDRGI--QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH------------AAQAALRRTMEK--ETKSTR 169 (456)
Q Consensus 106 ~~~~~--~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~------------~~~~~Ll~~le~--~~~~~~ 169 (456)
...+. ++-...+.++...+.. ..|| |+||||+|.+.- +..++|+.-|+. ....++
T Consensus 186 ~liGehVGdgar~Ihely~rA~~-----~aPc----ivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 186 ELIGEHVGDGARRIHELYERARK-----AAPC----IVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHh-----cCCe----EEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 43221 2222333333333222 2455 999999998743 234556555543 335688
Q ss_pred EEEEecCcccccccccCCce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH-----HHHH
Q psy12150 170 FCLICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITC-----LQSC 242 (456)
Q Consensus 170 lIl~~~~~~kl~~~l~~r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g-dlr~~~~~-----L~~~ 242 (456)
.|.++|.+.-+.+++++|+. .++|.-|+.++...+++..+++-.++++.. ++.++..+.| +-|.+..- |.++
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK~aLh~A 335 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLKTALHRA 335 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhHHHHHHHHHHHHH
Confidence 88899999999999999998 899999999999999999999888777766 7888888766 33433333 3332
Q ss_pred HHhhCCCCCCHHHHHHHhCC
Q psy12150 243 ARLKGGEGIVNEDVLEVTGV 262 (456)
Q Consensus 243 ~~~~~~~~It~~~v~~~~~~ 262 (456)
.. .+...|+.+|+..++..
T Consensus 336 i~-ed~e~v~~edie~al~k 354 (368)
T COG1223 336 IA-EDREKVEREDIEKALKK 354 (368)
T ss_pred HH-hchhhhhHHHHHHHHHh
Confidence 22 15678999998877653
No 94
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.77 E-value=1.4e-17 Score=170.38 Aligned_cols=211 Identities=22% Similarity=0.340 Sum_probs=137.9
Q ss_pred CCCCCcchhccCCCCcccccccHHHHHHHHHHHhcCC---C-C-eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEee
Q psy12150 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGAD---L-P-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELN 103 (456)
Q Consensus 29 ~~~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~---~-~-~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n 103 (456)
.+...||+++|+|++.+|++.++..+++++.|++... . . .++|+||+|||||++++.++++++.+ +.|..
T Consensus 3 ~~~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~-----v~Ew~ 77 (519)
T PF03215_consen 3 DDESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFE-----VQEWI 77 (519)
T ss_pred CcccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCe-----eEEec
Confidence 4667999999999999999999999999999997532 2 1 28999999999999999999998652 22211
Q ss_pred -CCC----------C----cChHHHHHHHHHHHHhhccCCC------CCCCCCCCcEEEEEcCCCCccHHH----HHHHH
Q psy12150 104 -ASD----------D----RGIQVIRDKVKTFAQQTASGFN------QDGKPCPPFKIVILDEADSMTHAA----QAALR 158 (456)
Q Consensus 104 -~~~----------~----~~~~~i~~~l~~~~~~~~~~~~------~~~~~~~~~~iviIDE~d~l~~~~----~~~Ll 158 (456)
... . ...+.....+..|......... ........++||+|||+..+.... .+.|.
T Consensus 78 np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~ 157 (519)
T PF03215_consen 78 NPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALR 157 (519)
T ss_pred CCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHH
Confidence 110 0 0001111222222221110000 011112468899999998875443 34455
Q ss_pred HHHHhccC-cceEEEEe-cC------cc-------cc-cccccC--CceEEEecCCCHHHHHHHHHHHHHHc-----CC-
Q psy12150 159 RTMEKETK-STRFCLIC-NY------VS-------CI-IQPLTS--RCSKFRFKPLAENTMLTRLQYICEQE-----SV- 214 (456)
Q Consensus 159 ~~le~~~~-~~~lIl~~-~~------~~-------kl-~~~l~~--r~~~i~f~~~~~~el~~~l~~~~~~~-----~~- 214 (456)
+++..... .++||++- +. .. .+ .+.+.. ++..|.|.|....-+.+.|.+++..+ +.
T Consensus 158 ~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~ 237 (519)
T PF03215_consen 158 QYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKN 237 (519)
T ss_pred HHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCc
Confidence 55554333 34444441 11 11 12 233443 35589999999999999999999987 32
Q ss_pred CCC--HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy12150 215 MCD--FKALETLVETSGGDMRRAITCLQSCAR 244 (456)
Q Consensus 215 ~i~--~~~l~~L~~~s~gdlr~~~~~L~~~~~ 244 (456)
..+ .+.++.|++.++||+|.|++.||.++.
T Consensus 238 ~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 238 KVPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred cCCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 233 446999999999999999999999987
No 95
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.3e-17 Score=155.54 Aligned_cols=202 Identities=20% Similarity=0.285 Sum_probs=145.7
Q ss_pred CCcccccccHHHHHHHHHHHh------------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC-
Q psy12150 42 KTIDDVIEQQEVVSVLKKCLS------------GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD- 107 (456)
Q Consensus 42 ~~~~~ivg~~~~~~~l~~~l~------------~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~- 107 (456)
-+++++-|.+..++++++.++ +-.+|. +|||||||||||.+|+++|++... .|+.+.++..
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A-----tFIrvvgSElV 222 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA-----TFIRVVGSELV 222 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc-----eEEEeccHHHH
Confidence 489999999999999999974 223444 999999999999999999998654 5666655541
Q ss_pred -----cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH-----------HHHHHHHHHHHh-----ccC
Q psy12150 108 -----RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEK-----ETK 166 (456)
Q Consensus 108 -----~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~-----------~~~~~Ll~~le~-----~~~ 166 (456)
.+..-++ +.+..+. ...|| ||||||+|.+.. +.|..++++|.+ +..
T Consensus 223 qKYiGEGaRlVR----elF~lAr-----ekaPs----IIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 223 QKYIGEGARLVR----ELFELAR-----EKAPS----IIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred HHHhccchHHHH----HHHHHHh-----hcCCe----EEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 1222222 2222221 22344 999999999843 357777777763 456
Q ss_pred cceEEEEecCcccccccccCCce---EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHH
Q psy12150 167 STRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGD-MRRAITCLQSC 242 (456)
Q Consensus 167 ~~~lIl~~~~~~kl~~~l~~r~~---~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gd-lr~~~~~L~~~ 242 (456)
++.+|++||.+.-+.|+|.+.+. .|+|+.|+.+....+++-+.++-+.. ++-.++.|++.++|- --.+.+.+..+
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~~g~sGAdlkaictEA 368 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLTEGFSGADLKAICTEA 368 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhcCCCchHHHHHHHHHH
Confidence 78999999999999999987765 89999999999999999888765432 334577788877653 23344444445
Q ss_pred HHhh---CCCCCCHHHHHHHhCC
Q psy12150 243 ARLK---GGEGIVNEDVLEVTGV 262 (456)
Q Consensus 243 ~~~~---~~~~It~~~v~~~~~~ 262 (456)
..++ .+..||.+|+.+++..
T Consensus 369 Gm~AiR~~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 369 GMFAIRERRDEVTMEDFLKAVEK 391 (406)
T ss_pred hHHHHHhccCeecHHHHHHHHHH
Confidence 4444 6788999998877653
No 96
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.76 E-value=6e-17 Score=170.49 Aligned_cols=232 Identities=18% Similarity=0.221 Sum_probs=166.2
Q ss_pred CCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCC---c--cccceEEeeCC
Q psy12150 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD---M--YRERILELNAS 105 (456)
Q Consensus 31 ~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~---~--~~~~~~e~n~~ 105 (456)
-+.|..+.+||.+|++++|++..+..+...+......+++|+||+|||||++++.+++..... . ....++.+++.
T Consensus 140 ~~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~ 219 (615)
T TIGR02903 140 LHKSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGT 219 (615)
T ss_pred hhhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEech
Confidence 456788899999999999999999988888877777779999999999999999998765321 0 13467888876
Q ss_pred CCcC-hHHHHHHH------------H-HHHHhhccCCCCCCCC-CCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----
Q psy12150 106 DDRG-IQVIRDKV------------K-TFAQQTASGFNQDGKP-CPPFKIVILDEADSMTHAAQAALRRTMEKET----- 165 (456)
Q Consensus 106 ~~~~-~~~i~~~l------------~-~~~~~~~~~~~~~~~~-~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~----- 165 (456)
.... ...+...+ . .+........ ..+.. .....++|+||++.|....+..|++++++..
T Consensus 220 ~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~-~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~ 298 (615)
T TIGR02903 220 TLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEP-KTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSS 298 (615)
T ss_pred hccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCch-hcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeec
Confidence 5321 11111100 0 0000000000 00000 0233499999999999999999999997632
Q ss_pred -----------------------CcceEEEEe-cCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q psy12150 166 -----------------------KSTRFCLIC-NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKAL 221 (456)
Q Consensus 166 -----------------------~~~~lIl~~-~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l 221 (456)
..++++.++ +++..+.+++++||..+.|.+++.+++..+++..+.+.+..++++++
T Consensus 299 ~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal 378 (615)
T TIGR02903 299 SYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVE 378 (615)
T ss_pred ceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 112333333 34567888999999999999999999999999999988888999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhh---------C--CCCCCHHHHHHHhCCCC
Q psy12150 222 ETLVETSGGDMRRAITCLQSCARLK---------G--GEGIVNEDVLEVTGVIP 264 (456)
Q Consensus 222 ~~L~~~s~gdlr~~~~~L~~~~~~~---------~--~~~It~~~v~~~~~~~~ 264 (456)
+.|.+++. +.|++++.|+.+..++ . ...|+.++|.++++...
T Consensus 379 ~~L~~ys~-~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 379 ELIARYTI-EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 99998765 6799999998775542 1 12688999999988664
No 97
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=8.6e-16 Score=151.41 Aligned_cols=238 Identities=21% Similarity=0.304 Sum_probs=167.6
Q ss_pred cchhccCCCCcccccccHHHHHHHH----HHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcC
Q psy12150 34 PWVEKYRPKTIDDVIEQQEVVSVLK----KCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG 109 (456)
Q Consensus 34 ~w~eky~P~~~~~ivg~~~~~~~l~----~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~ 109 (456)
-+.+-|.|.. +.+++..++++. .++.++.+.++++||+||||||.+++.+.+++........++++||.....
T Consensus 9 vl~~~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t 85 (366)
T COG1474 9 VLLEDYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRT 85 (366)
T ss_pred ccCCCCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCC
Confidence 3455677755 788888876665 455677777799999999999999999999997755544589999998766
Q ss_pred hHHHHHHHHH-HHHhhccCCCCCC---------CCCCCcEEEEEcCCCCccHHHHHHHHHHHH---hccCcceEEEEecC
Q psy12150 110 IQVIRDKVKT-FAQQTASGFNQDG---------KPCPPFKIVILDEADSMTHAAQAALRRTME---KETKSTRFCLICNY 176 (456)
Q Consensus 110 ~~~i~~~l~~-~~~~~~~~~~~~~---------~~~~~~~iviIDE~d~l~~~~~~~Ll~~le---~~~~~~~lIl~~~~ 176 (456)
...+...+-. +...+..+..... ......-||++||+|.|.....+.|..++. .....+.+|+++|+
T Consensus 86 ~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~ 165 (366)
T COG1474 86 PYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSND 165 (366)
T ss_pred HHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEecc
Confidence 6554443332 2111111100000 000244599999999998765455544443 33334567777776
Q ss_pred c---ccccccccCCce--EEEecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHH---HcCCCHHHHHHHHHHHHHhh
Q psy12150 177 V---SCIIQPLTSRCS--KFRFKPLAENTMLTRLQYICEQ--ESVMCDFKALETLVE---TSGGDMRRAITCLQSCARLK 246 (456)
Q Consensus 177 ~---~kl~~~l~~r~~--~i~f~~~~~~el~~~l~~~~~~--~~~~i~~~~l~~L~~---~s~gdlr~~~~~L~~~~~~~ 246 (456)
. ..+.+.+.++.. .+.|+|++.+|+..+|..+++. ....+++++++.++. ..+||.|.++..|..++..+
T Consensus 166 ~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiA 245 (366)
T COG1474 166 DKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIA 245 (366)
T ss_pred HHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 4 345677777765 6889999999999999999885 344688998888774 45789999999999998887
Q ss_pred ---CCCCCCHHHHHHHhCCCCHHHHHHHHcc
Q psy12150 247 ---GGEGIVNEDVLEVTGVIPKPWIEKLLKV 274 (456)
Q Consensus 247 ---~~~~It~~~v~~~~~~~~~~~i~~l~~~ 274 (456)
+.+.++.++|..+......+...+.++.
T Consensus 246 e~~~~~~v~~~~v~~a~~~~~~~~~~~~~~~ 276 (366)
T COG1474 246 EREGSRKVSEDHVREAQEEIERDVLEEVLKT 276 (366)
T ss_pred HhhCCCCcCHHHHHHHHHHhhHHHHHHHHHc
Confidence 5789999999999666655555555554
No 98
>PRK06620 hypothetical protein; Validated
Probab=99.74 E-value=6.5e-17 Score=148.51 Aligned_cols=192 Identities=15% Similarity=0.144 Sum_probs=134.5
Q ss_pred CcchhccCCCCcccccc---cHHHHHHHHHHHhcCC--C--CeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCC
Q psy12150 33 VPWVEKYRPKTIDDVIE---QQEVVSVLKKCLSGAD--L--PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg---~~~~~~~l~~~l~~~~--~--~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~ 105 (456)
.+|..+|+ |++++. +..+...++.+.+.+. + ++++||||+|+|||++++++++.... .++ ...
T Consensus 7 ~~~~~~~t---fd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~--~~~ 76 (214)
T PRK06620 7 FTTSSKYH---PDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNA-----YII--KDI 76 (214)
T ss_pred CCCCCCCC---chhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCC-----EEc--chh
Confidence 45555664 555553 4556777888776432 2 34999999999999999998886421 111 110
Q ss_pred CCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecC-cc--cccc
Q psy12150 106 DDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY-VS--CIIQ 182 (456)
Q Consensus 106 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~-~~--kl~~ 182 (456)
.. . ..+.. ...+++|||+|.+.....-.+.+.+.+.. ..++++++. +. .+ +
T Consensus 77 ~~-----~----~~~~~--------------~~d~lliDdi~~~~~~~lf~l~N~~~e~g--~~ilits~~~p~~l~l-~ 130 (214)
T PRK06620 77 FF-----N----EEILE--------------KYNAFIIEDIENWQEPALLHIFNIINEKQ--KYLLLTSSDKSRNFTL-P 130 (214)
T ss_pred hh-----c----hhHHh--------------cCCEEEEeccccchHHHHHHHHHHHHhcC--CEEEEEcCCCccccch-H
Confidence 00 0 01110 22399999999875443334444443332 244555543 22 24 8
Q ss_pred cccCCce---EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCHHHHH
Q psy12150 183 PLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNEDVL 257 (456)
Q Consensus 183 ~l~~r~~---~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~--~~~~It~~~v~ 257 (456)
.|++|+. .+++.+|+.+++..++++.++..|+.++++++++|++.++||+|.+++.|+.+..++ .++.||.+.++
T Consensus 131 ~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~~~ 210 (214)
T PRK06620 131 DLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVK 210 (214)
T ss_pred HHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 8999987 999999999999999999999899999999999999999999999999999976543 45679999988
Q ss_pred HHh
Q psy12150 258 EVT 260 (456)
Q Consensus 258 ~~~ 260 (456)
+++
T Consensus 211 ~~l 213 (214)
T PRK06620 211 EVL 213 (214)
T ss_pred HHh
Confidence 875
No 99
>KOG1970|consensus
Probab=99.74 E-value=5.8e-17 Score=160.02 Aligned_cols=211 Identities=22% Similarity=0.361 Sum_probs=141.6
Q ss_pred CCCCCcchhccCCCCcccccccHHHHHHHHHHHh-----cCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCccccceEE
Q psy12150 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLS-----GADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILE 101 (456)
Q Consensus 29 ~~~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~-----~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e 101 (456)
.....+|.++|+|.+.+++..++..+.+++.|++ ....++ +||+||+||||||+++.++++++.. +.|
T Consensus 66 ~d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~-----~~E 140 (634)
T KOG1970|consen 66 EDEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQ-----LIE 140 (634)
T ss_pred ccccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCce-----eee
Confidence 4567899999999999999999999999999998 555555 9999999999999999999998652 222
Q ss_pred eeC-----------CCCcC-hHHHHHHH---HHHHHhhc--cCCCCCC-CCCCCcEEEEEcCCCCccHH-H----HHHHH
Q psy12150 102 LNA-----------SDDRG-IQVIRDKV---KTFAQQTA--SGFNQDG-KPCPPFKIVILDEADSMTHA-A----QAALR 158 (456)
Q Consensus 102 ~n~-----------~~~~~-~~~i~~~l---~~~~~~~~--~~~~~~~-~~~~~~~iviIDE~d~l~~~-~----~~~Ll 158 (456)
.+. ....+ ...+...+ +.|..... ......+ ....++++|+|||+...... . ++.|.
T Consensus 141 w~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~ 220 (634)
T KOG1970|consen 141 WSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLR 220 (634)
T ss_pred ecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHHH
Confidence 110 00000 01122222 22332221 1111111 11135679999999876543 2 33344
Q ss_pred HHHHhccCcceEEEEec-------Ccccccccc--cCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC------HHHHHH
Q psy12150 159 RTMEKETKSTRFCLICN-------YVSCIIQPL--TSRCSKFRFKPLAENTMLTRLQYICEQESVMCD------FKALET 223 (456)
Q Consensus 159 ~~le~~~~~~~lIl~~~-------~~~kl~~~l--~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~------~~~l~~ 223 (456)
.|...+.-.++||++-. ......+.+ .-|...|.|.|+...-+.+.|+.+|..++...+ ...++.
T Consensus 221 ~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~ 300 (634)
T KOG1970|consen 221 LYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVEL 300 (634)
T ss_pred HHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHH
Confidence 44444333344444321 112233333 344559999999999999999999999887776 677899
Q ss_pred HHHHcCCCHHHHHHHHHHHHH
Q psy12150 224 LVETSGGDMRRAITCLQSCAR 244 (456)
Q Consensus 224 L~~~s~gdlr~~~~~L~~~~~ 244 (456)
++..++||+|.|++.||..+.
T Consensus 301 i~~~s~GDIRsAInsLQlsss 321 (634)
T KOG1970|consen 301 ICQGSGGDIRSAINSLQLSSS 321 (634)
T ss_pred HHHhcCccHHHHHhHhhhhcc
Confidence 999999999999999998853
No 100
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.74 E-value=4.1e-15 Score=144.73 Aligned_cols=136 Identities=20% Similarity=0.342 Sum_probs=111.5
Q ss_pred cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc--------------------ccceEEeeCCC----------CcChH
Q psy12150 63 GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY--------------------RERILELNASD----------DRGIQ 111 (456)
Q Consensus 63 ~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~--------------------~~~~~e~n~~~----------~~~~~ 111 (456)
.++.+| |||+||+|+|||++++.+++.+.+... ..++++++... ..+++
T Consensus 17 ~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id 96 (325)
T PRK08699 17 WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKID 96 (325)
T ss_pred cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHH
Confidence 457888 999999999999999999999875211 12466665531 13577
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccCCceEE
Q psy12150 112 VIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191 (456)
Q Consensus 112 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~r~~~i 191 (456)
.+++........+.. +++||+++|+++.|+...++.|++.|++++..+.||+++++...+.+.+.+||+.+
T Consensus 97 ~iR~l~~~~~~~p~~---------~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~ 167 (325)
T PRK08699 97 AVREIIDNVYLTSVR---------GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKM 167 (325)
T ss_pred HHHHHHHHHhhCccc---------CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhh
Confidence 788766555444333 27889999999999999999999999999888889999999999999999999999
Q ss_pred EecCCCHHHHHHHHHH
Q psy12150 192 RFKPLAENTMLTRLQY 207 (456)
Q Consensus 192 ~f~~~~~~el~~~l~~ 207 (456)
.|.+++.+++..||..
T Consensus 168 ~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 168 VLPAPSHEEALAYLRE 183 (325)
T ss_pred cCCCCCHHHHHHHHHh
Confidence 9999999999999974
No 101
>PRK05642 DNA replication initiation factor; Validated
Probab=99.73 E-value=4.1e-16 Score=145.58 Aligned_cols=210 Identities=15% Similarity=0.189 Sum_probs=145.5
Q ss_pred CcchhccCC-CCccccc-cc-HHHHHHHHHHHhc---CCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCC
Q psy12150 33 VPWVEKYRP-KTIDDVI-EQ-QEVVSVLKKCLSG---ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD 106 (456)
Q Consensus 33 ~~w~eky~P-~~~~~iv-g~-~~~~~~l~~~l~~---~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~ 106 (456)
.|+--...| .+|++++ |. ...+..+.++..+ +..++++|+||+|+|||++++++++++.... ..+++++..+
T Consensus 6 l~l~~~~~~~~tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~--~~v~y~~~~~ 83 (234)
T PRK05642 6 LPLGVRLRDDATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRG--EPAVYLPLAE 83 (234)
T ss_pred cccCCCCCCcccccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEeeHHH
Confidence 444444444 3788887 32 3334445555442 2234599999999999999999998775432 2456665543
Q ss_pred CcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH--HHHHHHHHHHHhcc-CcceEEEEecC-c---cc
Q psy12150 107 DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--AAQAALRRTMEKET-KSTRFCLICNY-V---SC 179 (456)
Q Consensus 107 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~--~~~~~Ll~~le~~~-~~~~lIl~~~~-~---~k 179 (456)
... ....+..... +..+++|||++.+.. ..++.|..+++... ....++++++. + ..
T Consensus 84 ~~~------~~~~~~~~~~-----------~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~ 146 (234)
T PRK05642 84 LLD------RGPELLDNLE-----------QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPI 146 (234)
T ss_pred HHh------hhHHHHHhhh-----------hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCc
Confidence 211 1111111110 223899999998853 34566777665432 23456666653 2 22
Q ss_pred ccccccCCc---eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCHH
Q psy12150 180 IIQPLTSRC---SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNE 254 (456)
Q Consensus 180 l~~~l~~r~---~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~--~~~~It~~ 254 (456)
..+.+.+|+ ..+.+.+++.++...+++..+...++.+++++++.|++.++||+|.+.+.++.+..++ .++.||..
T Consensus 147 ~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~ 226 (234)
T PRK05642 147 KLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLTIP 226 (234)
T ss_pred cCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCcCCHH
Confidence 368899998 6899999999999999998888889999999999999999999999999999886544 46789999
Q ss_pred HHHHHhC
Q psy12150 255 DVLEVTG 261 (456)
Q Consensus 255 ~v~~~~~ 261 (456)
.+++++.
T Consensus 227 ~~~~~L~ 233 (234)
T PRK05642 227 FLKETLG 233 (234)
T ss_pred HHHHHhc
Confidence 9988764
No 102
>CHL00181 cbbX CbbX; Provisional
Probab=99.73 E-value=1.8e-16 Score=151.94 Aligned_cols=188 Identities=18% Similarity=0.190 Sum_probs=132.6
Q ss_pred cccccHHHHHHHHHHHh----------cC-----CCCeEEEECCCCCcHHHHHHHHHHHhcCCcc--ccceEEeeCCCCc
Q psy12150 46 DVIEQQEVVSVLKKCLS----------GA-----DLPHFLFYGPPGTGKTSTMIAACHQLFGDMY--RERILELNASDDR 108 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~----------~~-----~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~--~~~~~e~n~~~~~ 108 (456)
+++|.+.+++++.+.+. .| ...|++|+||||||||++|+++++.+..... ...+++++..+..
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~ 103 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLV 103 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHH
Confidence 68999988887765531 11 1234999999999999999999997643111 2246666644311
Q ss_pred Ch--HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCc---------cHHHHHHHHHHHHhccCcceEEEEecCc
Q psy12150 109 GI--QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM---------THAAQAALRRTMEKETKSTRFCLICNYV 177 (456)
Q Consensus 109 ~~--~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l---------~~~~~~~Ll~~le~~~~~~~lIl~~~~~ 177 (456)
+. +............. ...||||||++.+ ..+.++.|+..|++....+++|++++..
T Consensus 104 ~~~~g~~~~~~~~~l~~a------------~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~ 171 (287)
T CHL00181 104 GQYIGHTAPKTKEVLKKA------------MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKD 171 (287)
T ss_pred HHHhccchHHHHHHHHHc------------cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcH
Confidence 10 00001111222221 1239999999987 3456788999999887778887776531
Q ss_pred -----ccccccccCCce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------cCCCHHHHHHHHHHHH
Q psy12150 178 -----SCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVET--------SGGDMRRAITCLQSCA 243 (456)
Q Consensus 178 -----~kl~~~l~~r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~--------s~gdlr~~~~~L~~~~ 243 (456)
....+++.+|+. .++|++++.+++..++...+++.+..+++++...+... ..||.|.+.+.++++.
T Consensus 172 ~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 172 RMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 133588999987 89999999999999999999999999999988777664 2489999999998875
Q ss_pred Hh
Q psy12150 244 RL 245 (456)
Q Consensus 244 ~~ 245 (456)
..
T Consensus 252 ~~ 253 (287)
T CHL00181 252 MR 253 (287)
T ss_pred HH
Confidence 53
No 103
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.73 E-value=3.6e-15 Score=141.58 Aligned_cols=172 Identities=21% Similarity=0.278 Sum_probs=135.4
Q ss_pred ccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc-------------------ccceEEeeCCC-C
Q psy12150 49 EQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY-------------------RERILELNASD-D 107 (456)
Q Consensus 49 g~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~-------------------~~~~~e~n~~~-~ 107 (456)
.++.+++.+++.+.+++.+| |||+|| +||+++|..+++.+.+... ..++..+.... .
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~ 83 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQV 83 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCc
Confidence 46788899999999999999 999996 6899999999998875321 01333443321 2
Q ss_pred cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccCC
Q psy12150 108 RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSR 187 (456)
Q Consensus 108 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~r 187 (456)
..++.+++.+..+...+..+ ++||+|||++|.|+.++.++|++.||+|+++++||++++.+.++.++++||
T Consensus 84 I~idqIR~l~~~~~~~p~~~---------~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SR 154 (290)
T PRK07276 84 IKTDTIRELVKNFSQSGYEG---------KQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSR 154 (290)
T ss_pred CCHHHHHHHHHHHhhCcccC---------CcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHc
Confidence 45678888777776655443 788999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q psy12150 188 CSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239 (456)
Q Consensus 188 ~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L 239 (456)
|+.+.|++ +.+++.+++. ++| ++.+....++..+ |++..++..+
T Consensus 155 cq~i~f~~-~~~~~~~~L~----~~g--~~~~~a~~la~~~-~s~~~A~~l~ 198 (290)
T PRK07276 155 TQIFHFPK-NEAYLIQLLE----QKG--LLKTQAELLAKLA-QSTSEAEKLA 198 (290)
T ss_pred ceeeeCCC-cHHHHHHHHH----HcC--CChHHHHHHHHHC-CCHHHHHHHh
Confidence 99999976 7777777665 345 4455555555554 5788888776
No 104
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.72 E-value=2e-15 Score=153.51 Aligned_cols=209 Identities=11% Similarity=0.161 Sum_probs=146.2
Q ss_pred CCCcccccc-c--HHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHH
Q psy12150 41 PKTIDDVIE-Q--QEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD 115 (456)
Q Consensus 41 P~~~~~ivg-~--~~~~~~l~~~l~~~--~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~ 115 (456)
+.+|+.++. . ..+......+.++. ..++++|||++|+|||++++++++.+........++++++.+.. ..+..
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~--~~~~~ 188 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA--RKAVD 188 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH--HHHHH
Confidence 468888883 2 22445555665532 23449999999999999999999987543233456676664421 11111
Q ss_pred H-------HHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCcc--HHHHHHHHHHHHhcc-CcceEEEEecCcc----ccc
Q psy12150 116 K-------VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT--HAAQAALRRTMEKET-KSTRFCLICNYVS----CII 181 (456)
Q Consensus 116 ~-------l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~--~~~~~~Ll~~le~~~-~~~~lIl~~~~~~----kl~ 181 (456)
. +..+.... ....+|+|||++.+. ...++.|..+++... ....+|++++... .+.
T Consensus 189 ~l~~~~~~~~~~~~~~-----------~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~ 257 (450)
T PRK14087 189 ILQKTHKEIEQFKNEI-----------CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFD 257 (450)
T ss_pred HHHHhhhHHHHHHHHh-----------ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhcc
Confidence 1 11111111 123499999999987 445666666654322 2224667777543 345
Q ss_pred ccccCCce---EEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--C--CCCCC
Q psy12150 182 QPLTSRCS---KFRFKPLAENTMLTRLQYICEQESV--MCDFKALETLVETSGGDMRRAITCLQSCARLK--G--GEGIV 252 (456)
Q Consensus 182 ~~l~~r~~---~i~f~~~~~~el~~~l~~~~~~~~~--~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~--~--~~~It 252 (456)
+.|.+|+. .+.+.+|+.+++.++|++.++..|. .+++++++.|+..++||+|.+.+.|.++..++ . +..||
T Consensus 258 ~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it 337 (450)
T PRK14087 258 NRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIIT 337 (450)
T ss_pred HHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 67888865 8999999999999999999998875 69999999999999999999999999986555 2 36899
Q ss_pred HHHHHHHhCC
Q psy12150 253 NEDVLEVTGV 262 (456)
Q Consensus 253 ~~~v~~~~~~ 262 (456)
.+.+++++..
T Consensus 338 ~~~v~~~l~~ 347 (450)
T PRK14087 338 IEIVSDLFRD 347 (450)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 105
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.72 E-value=3.5e-15 Score=152.85 Aligned_cols=207 Identities=14% Similarity=0.184 Sum_probs=146.3
Q ss_pred Cccccc-c--cHHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHH
Q psy12150 43 TIDDVI-E--QQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKV 117 (456)
Q Consensus 43 ~~~~iv-g--~~~~~~~l~~~l~~~--~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l 117 (456)
+|++++ | +......++.+.+.. ...+++||||+|+|||++++++++.+........++++++.+.. ..+...+
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~--~~~~~~~ 197 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT--NDFVNAL 197 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH--HHHHHHH
Confidence 677765 4 333556666666542 23449999999999999999999998654334467777765421 1111111
Q ss_pred -----HHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH--HHHHHHHHHHHhcc-CcceEEEEecCcc----ccccccc
Q psy12150 118 -----KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--AAQAALRRTMEKET-KSTRFCLICNYVS----CIIQPLT 185 (456)
Q Consensus 118 -----~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~--~~~~~Ll~~le~~~-~~~~lIl~~~~~~----kl~~~l~ 185 (456)
..+.... ....+|+|||++.+.. ..++.|...++... ....+|++++.+. .+.+.+.
T Consensus 198 ~~~~~~~~~~~~-----------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~ 266 (450)
T PRK00149 198 RNNTMEEFKEKY-----------RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLR 266 (450)
T ss_pred HcCcHHHHHHHH-----------hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 1111111 0233999999999854 24555665554321 1233556666432 2557788
Q ss_pred CCce---EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCHHHHHHHh
Q psy12150 186 SRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNEDVLEVT 260 (456)
Q Consensus 186 ~r~~---~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~--~~~~It~~~v~~~~ 260 (456)
+|+. .++|.+|+.+++.++++..++..++.+++++++.|++.++||+|.+...|..+..++ .++.||.+.+++++
T Consensus 267 SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l 346 (450)
T PRK00149 267 SRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEAL 346 (450)
T ss_pred hHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHH
Confidence 9984 899999999999999999999999999999999999999999999999999887776 46789999999887
Q ss_pred CC
Q psy12150 261 GV 262 (456)
Q Consensus 261 ~~ 262 (456)
..
T Consensus 347 ~~ 348 (450)
T PRK00149 347 KD 348 (450)
T ss_pred HH
Confidence 64
No 106
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.71 E-value=6.8e-16 Score=148.07 Aligned_cols=188 Identities=18% Similarity=0.185 Sum_probs=134.3
Q ss_pred cccccHHHHHHHHHHHh----------cCC----C-CeEEEECCCCCcHHHHHHHHHHHhcCCcc--ccceEEeeCCCCc
Q psy12150 46 DVIEQQEVVSVLKKCLS----------GAD----L-PHFLFYGPPGTGKTSTMIAACHQLFGDMY--RERILELNASDDR 108 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~----------~~~----~-~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~--~~~~~e~n~~~~~ 108 (456)
+++|.+.+++.+.+.+. .|. + .+++|+||||||||++|+++++.+..... ...++++++.+..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 68999988887765431 111 1 25999999999999999999987753221 2246666654321
Q ss_pred Ch--HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCc---------cHHHHHHHHHHHHhccCcceEEEEecCc
Q psy12150 109 GI--QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM---------THAAQAALRRTMEKETKSTRFCLICNYV 177 (456)
Q Consensus 109 ~~--~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l---------~~~~~~~Ll~~le~~~~~~~lIl~~~~~ 177 (456)
+. ......+........ ..+|||||++.| ..+.++.|++.|++....+++|++++..
T Consensus 103 ~~~~g~~~~~~~~~~~~a~------------~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~ 170 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAM------------GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKD 170 (284)
T ss_pred HhhcccchHHHHHHHHHcc------------CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcH
Confidence 10 000011122222211 139999999987 2456788999999887778777776532
Q ss_pred -----ccccccccCCce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------cCCCHHHHHHHHHHHH
Q psy12150 178 -----SCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVET--------SGGDMRRAITCLQSCA 243 (456)
Q Consensus 178 -----~kl~~~l~~r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~--------s~gdlr~~~~~L~~~~ 243 (456)
..+.+++.+|+. .++|++++.+++..+++..+++.+..+++++++.+..+ ..||.|.+.|.++.+.
T Consensus 171 ~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~ 250 (284)
T TIGR02880 171 RMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRAR 250 (284)
T ss_pred HHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 234688999986 89999999999999999999999999999999988775 4699999999999876
Q ss_pred Hh
Q psy12150 244 RL 245 (456)
Q Consensus 244 ~~ 245 (456)
..
T Consensus 251 ~~ 252 (284)
T TIGR02880 251 LR 252 (284)
T ss_pred HH
Confidence 54
No 107
>PRK09087 hypothetical protein; Validated
Probab=99.70 E-value=7.6e-16 Score=142.63 Aligned_cols=190 Identities=16% Similarity=0.145 Sum_probs=136.3
Q ss_pred Ccccccc---cHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHH
Q psy12150 43 TIDDVIE---QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119 (456)
Q Consensus 43 ~~~~ivg---~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~ 119 (456)
+|++++. +..++..+.++. ++..+.++|+||+|+|||++++++++... ..+++..+ ...+ .+..
T Consensus 19 ~~~~Fi~~~~N~~a~~~l~~~~-~~~~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~~-~~~~----~~~~ 85 (226)
T PRK09087 19 GRDDLLVTESNRAAVSLVDHWP-NWPSPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPNE-IGSD----AANA 85 (226)
T ss_pred ChhceeecCchHHHHHHHHhcc-cCCCCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHHH-cchH----HHHh
Confidence 6888884 445566666654 33334499999999999999999998642 22333321 0001 1111
Q ss_pred HHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-CcceEEEEecCc---cc-ccccccCCc---eEE
Q psy12150 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-KSTRFCLICNYV---SC-IIQPLTSRC---SKF 191 (456)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-~~~~lIl~~~~~---~k-l~~~l~~r~---~~i 191 (456)
.. ..+|+|||++.+.. .++.|..+++... ....+|++++.. .. ..+.+++|+ ..+
T Consensus 86 ~~----------------~~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~ 148 (226)
T PRK09087 86 AA----------------EGPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVV 148 (226)
T ss_pred hh----------------cCeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCcee
Confidence 10 12899999998743 3455655554322 234466666532 23 468899998 699
Q ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCHHHHHHHhCC
Q psy12150 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNEDVLEVTGV 262 (456)
Q Consensus 192 ~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~--~~~~It~~~v~~~~~~ 262 (456)
++.+|+.+++..++++.++..++.++++++++|++.++|++|.++..+.++..++ .++.||...+++++..
T Consensus 149 ~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~ 221 (226)
T PRK09087 149 EIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLNE 221 (226)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999888876655 4688999999988864
No 108
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.70 E-value=7.6e-15 Score=148.57 Aligned_cols=207 Identities=15% Similarity=0.201 Sum_probs=144.0
Q ss_pred Cccccc-ccHH--HHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHH-
Q psy12150 43 TIDDVI-EQQE--VVSVLKKCLSGAD--LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK- 116 (456)
Q Consensus 43 ~~~~iv-g~~~--~~~~l~~~l~~~~--~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~- 116 (456)
+|++++ |... ....+..+.+... ..+++||||+|+|||++++++++++........++++++.+.. ..+...
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~--~~~~~~~ 185 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT--NDFVNAL 185 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH--HHHHHHH
Confidence 566644 5433 3455555555422 2349999999999999999999988654323467777665421 111111
Q ss_pred ----HHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH--HHHHHHHHHHhc-cCcceEEEEecCc----cccccccc
Q psy12150 117 ----VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--AQAALRRTMEKE-TKSTRFCLICNYV----SCIIQPLT 185 (456)
Q Consensus 117 ----l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~--~~~~Ll~~le~~-~~~~~lIl~~~~~----~kl~~~l~ 185 (456)
+..+.... ....+|+|||++.+... .++.|...++.. .....+|++++.. ..+.+.+.
T Consensus 186 ~~~~~~~~~~~~-----------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~ 254 (405)
T TIGR00362 186 RNNKMEEFKEKY-----------RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLR 254 (405)
T ss_pred HcCCHHHHHHHH-----------HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhh
Confidence 11111111 02249999999998643 455566655432 1223466666643 23557788
Q ss_pred CCce---EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCHHHHHHHh
Q psy12150 186 SRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNEDVLEVT 260 (456)
Q Consensus 186 ~r~~---~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~--~~~~It~~~v~~~~ 260 (456)
+|+. .++|.+|+.+++..+++..++..++.+++++++.|++...||+|.+...|.++..++ .++.||.+.+++++
T Consensus 255 SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L 334 (405)
T TIGR00362 255 SRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEAL 334 (405)
T ss_pred hhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 8875 799999999999999999999999999999999999999999999999998887776 46789999998887
Q ss_pred CC
Q psy12150 261 GV 262 (456)
Q Consensus 261 ~~ 262 (456)
..
T Consensus 335 ~~ 336 (405)
T TIGR00362 335 KD 336 (405)
T ss_pred HH
Confidence 53
No 109
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.69 E-value=2.1e-15 Score=139.58 Aligned_cols=211 Identities=12% Similarity=0.076 Sum_probs=142.7
Q ss_pred CCe-EEEECCCCCcHHHHHHHHHHHhcCCccc-----------------cceEEeeC-CCCcChHHHHHHHHHHHHhhcc
Q psy12150 66 LPH-FLFYGPPGTGKTSTMIAACHQLFGDMYR-----------------ERILELNA-SDDRGIQVIRDKVKTFAQQTAS 126 (456)
Q Consensus 66 ~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~-----------------~~~~e~n~-~~~~~~~~i~~~l~~~~~~~~~ 126 (456)
++| +||+||+|+||..+|.++++.+.+.... .++..+.. ....+.+.+++....+...+..
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 455 9999999999999999999998753210 12233222 1234567777766665533321
Q ss_pred CCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccCCceEEEecCC----------
Q psy12150 127 GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPL---------- 196 (456)
Q Consensus 127 ~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~r~~~i~f~~~---------- 196 (456)
. +++||+||+++|.|+.++.++|++.+|+|++.++||++++.+.++.+.++|||+.+.|+++
T Consensus 86 ~--------~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~ 157 (261)
T PRK05818 86 S--------NGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVES 157 (261)
T ss_pred c--------CCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhccccccc
Confidence 1 2678999999999999999999999999999999999999999999999999999999888
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCCHHHHHHHHcc--
Q psy12150 197 AENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV-- 274 (456)
Q Consensus 197 ~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~~~~~~i~~l~~~-- 274 (456)
++.++.+++... . .+++ .++..++|++.+++..++.+ .......++..++......-....+..++..
T Consensus 158 ~~~~i~~~L~~~---~--~~d~----~i~~~a~g~~~~a~~l~~~l-~n~~~~~~~v~kl~~~~~~~~~q~~~~~l~~l~ 227 (261)
T PRK05818 158 NDRYFQYILLSF---Y--SVDE----QLQAYNNGSFSKLKNIIETL-INKKNKLIQIHKAWILFKTFSYYEIAQLLNLLI 227 (261)
T ss_pred ChHHHHHHHHHc---c--CccH----HHHHHcCCCHHHHHHHHHHH-HcccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 454555544422 1 2344 67778899999999999854 2222333444444444444433333333332
Q ss_pred --cchHHHHHHHHHHHHhccCH
Q psy12150 275 --DSFQVLEKYIEDLILEAYSA 294 (456)
Q Consensus 275 --~~~~~a~~~~~~l~~~~~~~ 294 (456)
++.++-..+++-+-..++++
T Consensus 228 ~~~~~~~k~~~~~~~~~l~~n~ 249 (261)
T PRK05818 228 PTVDPEKKSKLYNLLSNLKYNL 249 (261)
T ss_pred hccCchHHHHHHHHHHhcCCCC
Confidence 55555555555554444443
No 110
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.68 E-value=3.4e-14 Score=146.38 Aligned_cols=208 Identities=16% Similarity=0.171 Sum_probs=143.7
Q ss_pred Ccccccc-cHH--HHHHHHHHHhcC-C-CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcC--hHHHHH
Q psy12150 43 TIDDVIE-QQE--VVSVLKKCLSGA-D-LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG--IQVIRD 115 (456)
Q Consensus 43 ~~~~ivg-~~~--~~~~l~~~l~~~-~-~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~--~~~i~~ 115 (456)
+|++++. ... ....+...+.+. . ...++|||++|+|||++++++++.+........++++++.+... ...+.+
T Consensus 286 TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~ 365 (617)
T PRK14086 286 TFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRD 365 (617)
T ss_pred CHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHh
Confidence 7888874 222 334455555432 2 22399999999999999999999875422233566666644210 011111
Q ss_pred -HHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH--HHHHHHHHHHhccC-cceEEEEecCc----ccccccccCC
Q psy12150 116 -KVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--AQAALRRTMEKETK-STRFCLICNYV----SCIIQPLTSR 187 (456)
Q Consensus 116 -~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~--~~~~Ll~~le~~~~-~~~lIl~~~~~----~kl~~~l~~r 187 (456)
.+..|.... ....+|+|||++.+... .++.|..+++.... ...+|++++.. ..+.+.|.+|
T Consensus 366 ~~~~~f~~~y-----------~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SR 434 (617)
T PRK14086 366 GKGDSFRRRY-----------REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNR 434 (617)
T ss_pred ccHHHHHHHh-----------hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhh
Confidence 111111110 12349999999998542 35556655543322 23455677653 2456778899
Q ss_pred ce---EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCHHHHHHHhC
Q psy12150 188 CS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNEDVLEVTG 261 (456)
Q Consensus 188 ~~---~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~--~~~~It~~~v~~~~~ 261 (456)
+. .+++.+|+.+....+|+..++..++.++++++++|+....+|+|.+...|.++..++ .++.||.+.+++++.
T Consensus 435 f~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~ 513 (617)
T PRK14086 435 FEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLR 513 (617)
T ss_pred hhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Confidence 75 899999999999999999999999999999999999999999999999999987776 467899988887774
No 111
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.67 E-value=1.7e-15 Score=163.50 Aligned_cols=221 Identities=19% Similarity=0.201 Sum_probs=163.0
Q ss_pred CCCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCcc-----ccceEEeeC
Q psy12150 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY-----RERILELNA 104 (456)
Q Consensus 30 ~~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~-----~~~~~e~n~ 104 (456)
....++.++.+|..+++++|+++.++.+.+.+......+++|+||||||||++++.+++.+..... ...++.++.
T Consensus 167 ~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 167 KYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM 246 (731)
T ss_pred HHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence 356788999999999999999999999999998888778999999999999999999998744221 234566664
Q ss_pred CCC----cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH---------HHHHHHHHHHHhccCcceEE
Q psy12150 105 SDD----RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH---------AAQAALRRTMEKETKSTRFC 171 (456)
Q Consensus 105 ~~~----~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~---------~~~~~Ll~~le~~~~~~~lI 171 (456)
+.. ...+...+.+.......... ...|+||||+|.+.+ +..+.|..++++. .+.+|
T Consensus 247 ~~l~a~~~~~g~~e~~l~~i~~~~~~~---------~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~I 315 (731)
T TIGR02639 247 GSLLAGTKYRGDFEERLKAVVSEIEKE---------PNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCI 315 (731)
T ss_pred HHHhhhccccchHHHHHHHHHHHHhcc---------CCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEE
Confidence 331 11223334444444332111 123999999998853 3456777888753 46677
Q ss_pred EEecC-----cccccccccCCceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHH
Q psy12150 172 LICNY-----VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ----ESVMCDFKALETLVETSGGD------MRRAI 236 (456)
Q Consensus 172 l~~~~-----~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~----~~~~i~~~~l~~L~~~s~gd------lr~~~ 236 (456)
.+|+. .....+++.+|+..+.+.+|+.++...+|+..... .++.++++++..++..++.. ++.++
T Consensus 316 gaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai 395 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAI 395 (731)
T ss_pred EecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHH
Confidence 77664 23467899999999999999999999999977654 45789999999999988542 77889
Q ss_pred HHHHHHHHhhC-------CCCCCHHHHHHHhC
Q psy12150 237 TCLQSCARLKG-------GEGIVNEDVLEVTG 261 (456)
Q Consensus 237 ~~L~~~~~~~~-------~~~It~~~v~~~~~ 261 (456)
..++.++.... ...|+.++|..++.
T Consensus 396 ~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~ 427 (731)
T TIGR02639 396 DVIDEAGASFRLRPKAKKKANVSVKDIENVVA 427 (731)
T ss_pred HHHHHhhhhhhcCcccccccccCHHHHHHHHH
Confidence 99988765431 23589999888765
No 112
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.67 E-value=3.2e-14 Score=144.24 Aligned_cols=208 Identities=18% Similarity=0.261 Sum_probs=144.7
Q ss_pred cCC-CCccccc-ccHH--HHHHHHHHHhc------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCc
Q psy12150 39 YRP-KTIDDVI-EQQE--VVSVLKKCLSG------ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (456)
Q Consensus 39 y~P-~~~~~iv-g~~~--~~~~l~~~l~~------~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~ 108 (456)
..| .+|++++ |... ....++.+.+. ....+++||||+|+|||++++++++.+.... ..++++++....
T Consensus 104 l~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~--~~v~yi~~~~f~ 181 (445)
T PRK12422 104 LDPLMTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESG--GKILYVRSELFT 181 (445)
T ss_pred CCccccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcC--CCEEEeeHHHHH
Confidence 344 3888887 4322 33455555542 1234599999999999999999999875432 356666553211
Q ss_pred ChHHHHHHHH-----HHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH--HHHHHHHHHHHhc-cCcceEEEEecCc---
Q psy12150 109 GIQVIRDKVK-----TFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--AAQAALRRTMEKE-TKSTRFCLICNYV--- 177 (456)
Q Consensus 109 ~~~~i~~~l~-----~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~--~~~~~Ll~~le~~-~~~~~lIl~~~~~--- 177 (456)
..+...+. .+.... ....+++|||++.+.. ..++.|...++.. .....+|++++..
T Consensus 182 --~~~~~~l~~~~~~~f~~~~-----------~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~ 248 (445)
T PRK12422 182 --EHLVSAIRSGEMQRFRQFY-----------RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQD 248 (445)
T ss_pred --HHHHHHHhcchHHHHHHHc-----------ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHH
Confidence 11111111 111110 1334999999999864 3456665554421 1234566677653
Q ss_pred -ccccccccCCc---eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH---Hhh--CC
Q psy12150 178 -SCIIQPLTSRC---SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA---RLK--GG 248 (456)
Q Consensus 178 -~kl~~~l~~r~---~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~---~~~--~~ 248 (456)
..+.+.+.+|+ ..+.+.+|+.+++..+|+..++..++.++++++++|+....+|+|.+.+.|+.++ .++ .+
T Consensus 249 l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~~~ 328 (445)
T PRK12422 249 LKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKLSH 328 (445)
T ss_pred HhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 34567889998 4899999999999999999999999999999999999999999999999999985 454 46
Q ss_pred CCCCHHHHHHHhC
Q psy12150 249 EGIVNEDVLEVTG 261 (456)
Q Consensus 249 ~~It~~~v~~~~~ 261 (456)
..||.+.+++++.
T Consensus 329 ~~i~~~~~~~~l~ 341 (445)
T PRK12422 329 QLLYVDDIKALLH 341 (445)
T ss_pred CCCCHHHHHHHHH
Confidence 7899999988775
No 113
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.66 E-value=3.9e-15 Score=151.68 Aligned_cols=211 Identities=15% Similarity=0.140 Sum_probs=141.1
Q ss_pred CCCcccccccHHHHHHHHHHHh--------cC-CCC-eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcC-
Q psy12150 41 PKTIDDVIEQQEVVSVLKKCLS--------GA-DLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG- 109 (456)
Q Consensus 41 P~~~~~ivg~~~~~~~l~~~l~--------~~-~~~-~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~- 109 (456)
+.+|+++.|.+.+++.+.+... -| ..| ++|||||||||||.+|+++++.+.. +++.++++...+
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~-----~~~~l~~~~l~~~ 298 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL-----PLLRLDVGKLFGG 298 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEEhHHhccc
Confidence 3578999999888877765321 12 223 3999999999999999999998643 556665543111
Q ss_pred -hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH------------HHHHHHHHHHhccCcceEEEEecC
Q psy12150 110 -IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA------------AQAALRRTMEKETKSTRFCLICNY 176 (456)
Q Consensus 110 -~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~------------~~~~Ll~~le~~~~~~~lIl~~~~ 176 (456)
.+.-...+......... ..|| ||+|||+|.+... ....++..|.+....+++|.++|+
T Consensus 299 ~vGese~~l~~~f~~A~~-----~~P~----IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~ 369 (489)
T CHL00195 299 IVGESESRMRQMIRIAEA-----LSPC----ILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANN 369 (489)
T ss_pred ccChHHHHHHHHHHHHHh-----cCCc----EEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCC
Confidence 11112222222222111 1234 9999999977431 234566777766666778888899
Q ss_pred cccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhh--CCC
Q psy12150 177 VSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVM-CDFKALETLVETSGG-DMRRAITCLQSCARLK--GGE 249 (456)
Q Consensus 177 ~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~-i~~~~l~~L~~~s~g-dlr~~~~~L~~~~~~~--~~~ 249 (456)
+..+.+++.+ |+. .+.++.|+.++..++++..+++.+.. .++..++.|++.+.| +-..+.+.+..++..+ .++
T Consensus 370 ~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~ 449 (489)
T CHL00195 370 IDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR 449 (489)
T ss_pred hhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999876 554 78999999999999999998875433 346668889988765 2333333333333322 567
Q ss_pred CCCHHHHHHHhCCCCH
Q psy12150 250 GIVNEDVLEVTGVIPK 265 (456)
Q Consensus 250 ~It~~~v~~~~~~~~~ 265 (456)
.++.+|+..++....+
T Consensus 450 ~lt~~dl~~a~~~~~P 465 (489)
T CHL00195 450 EFTTDDILLALKQFIP 465 (489)
T ss_pred CcCHHHHHHHHHhcCC
Confidence 8999999988776654
No 114
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.66 E-value=5.5e-15 Score=153.14 Aligned_cols=214 Identities=21% Similarity=0.217 Sum_probs=138.4
Q ss_pred cchhccCCCCcccccccHHHHHHHHHHHh-----------cCCCC-eEEEECCCCCcHHHHHHHHHHHhcCCccccceEE
Q psy12150 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLS-----------GADLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILE 101 (456)
Q Consensus 34 ~w~eky~P~~~~~ivg~~~~~~~l~~~l~-----------~~~~~-~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e 101 (456)
-+.+.....+|++++|.++++..+.+.+. +...+ ++|||||||||||++++++++.... +++.
T Consensus 44 ~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~-----~~~~ 118 (495)
T TIGR01241 44 LLNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV-----PFFS 118 (495)
T ss_pred cccCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC-----Ceee
Confidence 34444556699999999998877776553 23333 3999999999999999999998643 4566
Q ss_pred eeCCCCcCh--HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH--------------HHHHHHHHHHhc-
Q psy12150 102 LNASDDRGI--QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--------------AQAALRRTMEKE- 164 (456)
Q Consensus 102 ~n~~~~~~~--~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~--------------~~~~Ll~~le~~- 164 (456)
+++++.... +.-...+......... ..|+ ||||||+|.+... ..+.|+..|+..
T Consensus 119 i~~~~~~~~~~g~~~~~l~~~f~~a~~-----~~p~----Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~ 189 (495)
T TIGR01241 119 ISGSDFVEMFVGVGASRVRDLFEQAKK-----NAPC----IIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 189 (495)
T ss_pred ccHHHHHHHHhcccHHHHHHHHHHHHh-----cCCC----EEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc
Confidence 655432110 0001122222222111 1233 9999999988532 223444445432
Q ss_pred -cCcceEEEEecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Q psy12150 165 -TKSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITCL 239 (456)
Q Consensus 165 -~~~~~lIl~~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g-dlr~~~~~L 239 (456)
...+++|.++|.+..+.+++.+ |+. .+.++.|+.++..++++..++..+.. ++..+..++..+.| +.+.+.+.+
T Consensus 190 ~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~ 268 (495)
T TIGR01241 190 TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLL 268 (495)
T ss_pred CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHH
Confidence 2346778888889999999987 443 79999999999999999888764433 34456788888765 334444444
Q ss_pred HHHHHhh---CCCCCCHHHHHHHhCC
Q psy12150 240 QSCARLK---GGEGIVNEDVLEVTGV 262 (456)
Q Consensus 240 ~~~~~~~---~~~~It~~~v~~~~~~ 262 (456)
+.++..+ +...|+.+++..++..
T Consensus 269 ~eA~~~a~~~~~~~i~~~~l~~a~~~ 294 (495)
T TIGR01241 269 NEAALLAARKNKTEITMNDIEEAIDR 294 (495)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4443322 4567999999987653
No 115
>KOG0730|consensus
Probab=99.65 E-value=2.8e-15 Score=151.40 Aligned_cols=202 Identities=21% Similarity=0.251 Sum_probs=139.1
Q ss_pred CCCcccccccHHHHHHHHHHHh-----------cC-CCC-eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCC-
Q psy12150 41 PKTIDDVIEQQEVVSVLKKCLS-----------GA-DLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD- 106 (456)
Q Consensus 41 P~~~~~ivg~~~~~~~l~~~l~-----------~~-~~~-~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~- 106 (456)
.-+|++|-|+++++..|++.+. -| .+| .+|||||||||||++|++++++... +++.+.+.+
T Consensus 430 ~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~-----nFlsvkgpEL 504 (693)
T KOG0730|consen 430 NVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM-----NFLSVKGPEL 504 (693)
T ss_pred CCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC-----CeeeccCHHH
Confidence 3589999999999999987763 12 233 3999999999999999999998644 455554433
Q ss_pred -----CcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHH-----------HHHHHHHHHhc--cCcc
Q psy12150 107 -----DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA-----------QAALRRTMEKE--TKST 168 (456)
Q Consensus 107 -----~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~-----------~~~Ll~~le~~--~~~~ 168 (456)
..+...+++.+....+.+ || |||+||+|.+..+. .+.|+.-|+.. ..++
T Consensus 505 ~sk~vGeSEr~ir~iF~kAR~~a---------P~----IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 505 FSKYVGESERAIREVFRKARQVA---------PC----IIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred HHHhcCchHHHHHHHHHHHhhcC---------Ce----EEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcE
Confidence 122233444433333222 22 99999999986542 33444444322 2467
Q ss_pred eEEEEecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHH
Q psy12150 169 RFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFK-ALETLVETSGG-DMRRAITCLQSCA 243 (456)
Q Consensus 169 ~lIl~~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~-~l~~L~~~s~g-dlr~~~~~L~~~~ 243 (456)
.+|.++|.+..+.+++.+ |+. .+.+++|+.+...++++..+++ .+++++ .++.|++.+.| +-..+...++.++
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk--mp~~~~vdl~~La~~T~g~SGAel~~lCq~A~ 649 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK--MPFSEDVDLEELAQATEGYSGAEIVAVCQEAA 649 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc--CCCCccccHHHHHHHhccCChHHHHHHHHHHH
Confidence 777788889999999998 444 7899999999999999988875 455655 78889998876 4556677777777
Q ss_pred Hhh-----CCCCCCHHHHHHHhCC
Q psy12150 244 RLK-----GGEGIVNEDVLEVTGV 262 (456)
Q Consensus 244 ~~~-----~~~~It~~~v~~~~~~ 262 (456)
.++ ....|+.++..+++..
T Consensus 650 ~~a~~e~i~a~~i~~~hf~~al~~ 673 (693)
T KOG0730|consen 650 LLALRESIEATEITWQHFEEALKA 673 (693)
T ss_pred HHHHHHhcccccccHHHHHHHHHh
Confidence 766 2334555555555443
No 116
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.64 E-value=5.9e-15 Score=148.23 Aligned_cols=216 Identities=17% Similarity=0.210 Sum_probs=139.1
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhc------------CCCC-eEEEECCCCCcHHHHHHHHHHHhcCCccccc
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG------------ADLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRER 98 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~------------~~~~-~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~ 98 (456)
...+.+++.+.+|+++.|.+..++.+.+++.- ...+ +++||||||||||++++++++.+.. .
T Consensus 170 ~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~-----~ 244 (438)
T PTZ00361 170 SVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA-----T 244 (438)
T ss_pred hhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC-----C
Confidence 34567777778999999999999999887741 1222 3999999999999999999998754 3
Q ss_pred eEEeeCCCCcC--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH-----------HHHHHHHHHH---H
Q psy12150 99 ILELNASDDRG--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTM---E 162 (456)
Q Consensus 99 ~~e~n~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~-----------~~~~~Ll~~l---e 162 (456)
++.+..++... .+.-...+......+.. ..|+ +|||||+|.+.. +.+..++.++ +
T Consensus 245 fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~-----~~P~----ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ld 315 (438)
T PTZ00361 245 FLRVVGSELIQKYLGDGPKLVRELFRVAEE-----NAPS----IVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLD 315 (438)
T ss_pred EEEEecchhhhhhcchHHHHHHHHHHHHHh-----CCCc----EEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHh
Confidence 55555544211 11111122222222211 1233 999999987742 1233344443 3
Q ss_pred h--ccCcceEEEEecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Q psy12150 163 K--ETKSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAI 236 (456)
Q Consensus 163 ~--~~~~~~lIl~~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g-dlr~~~ 236 (456)
. ....+.+|+++|....+.+++.+ |+. .++|++|+.++..++++..+.+.... ++-.++.++..+.| +...+.
T Consensus 316 g~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~dvdl~~la~~t~g~sgAdI~ 394 (438)
T PTZ00361 316 GFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAKDELSGADIK 394 (438)
T ss_pred hhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cCcCHHHHHHhcCCCCHHHHH
Confidence 2 23467788899988889888875 443 89999999999999999887765432 12235556655543 333344
Q ss_pred HHHHHHHHhh---CCCCCCHHHHHHHhCC
Q psy12150 237 TCLQSCARLK---GGEGIVNEDVLEVTGV 262 (456)
Q Consensus 237 ~~L~~~~~~~---~~~~It~~~v~~~~~~ 262 (456)
+.+..++..+ +...|+.+|+..++..
T Consensus 395 ~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~ 423 (438)
T PTZ00361 395 AICTEAGLLALRERRMKVTQADFRKAKEK 423 (438)
T ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHHHH
Confidence 4444444433 5678999999877654
No 117
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.64 E-value=8.3e-15 Score=146.82 Aligned_cols=207 Identities=19% Similarity=0.237 Sum_probs=135.9
Q ss_pred CCcccccccHHHHHHHHHHHhc------------CCC-CeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCc
Q psy12150 42 KTIDDVIEQQEVVSVLKKCLSG------------ADL-PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (456)
Q Consensus 42 ~~~~~ivg~~~~~~~l~~~l~~------------~~~-~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~ 108 (456)
.+|+++.|.+..++.+.+.+.. ..+ .++|||||||||||++|+++++.+.. .++.+++++..
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~-----~~i~v~~~~l~ 202 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA-----TFIRVVGSELV 202 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC-----CEEEeehHHHh
Confidence 4789999999999999887631 122 33999999999999999999998754 46666655421
Q ss_pred C--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCcc-----------HHHHHHHHHHHHh-----ccCcceE
Q psy12150 109 G--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT-----------HAAQAALRRTMEK-----ETKSTRF 170 (456)
Q Consensus 109 ~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~-----------~~~~~~Ll~~le~-----~~~~~~l 170 (456)
. .+.....+......... ..| .+|||||+|.+. .+.+..+..++.. ....+++
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~-----~~p----~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~V 273 (389)
T PRK03992 203 QKFIGEGARLVRELFELARE-----KAP----SIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKI 273 (389)
T ss_pred HhhccchHHHHHHHHHHHHh-----cCC----eEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEE
Confidence 1 11111222222222111 112 399999999984 2334455555532 1245778
Q ss_pred EEEecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhh
Q psy12150 171 CLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITCLQSCARLK 246 (456)
Q Consensus 171 Il~~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g-dlr~~~~~L~~~~~~~ 246 (456)
|.++|.+..+.+++.+ |+. .++|++|+.++..++++.+++..... .+..+..++..+.| ..+.+...+..++..+
T Consensus 274 I~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~~eA~~~a 352 (389)
T PRK03992 274 IAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAICTEAGMFA 352 (389)
T ss_pred EEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 8888988888888875 554 79999999999999999887654332 12346777887765 3344444444444433
Q ss_pred ---CCCCCCHHHHHHHhCCC
Q psy12150 247 ---GGEGIVNEDVLEVTGVI 263 (456)
Q Consensus 247 ---~~~~It~~~v~~~~~~~ 263 (456)
+...|+.+|+.+++...
T Consensus 353 ~~~~~~~i~~~d~~~A~~~~ 372 (389)
T PRK03992 353 IRDDRTEVTMEDFLKAIEKV 372 (389)
T ss_pred HHcCCCCcCHHHHHHHHHHH
Confidence 45679999998877654
No 118
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.63 E-value=3.9e-15 Score=137.38 Aligned_cols=191 Identities=18% Similarity=0.245 Sum_probs=126.0
Q ss_pred Cccccc-c--cHHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHH
Q psy12150 43 TIDDVI-E--QQEVVSVLKKCLSGAD--LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKV 117 (456)
Q Consensus 43 ~~~~iv-g--~~~~~~~l~~~l~~~~--~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l 117 (456)
||+.++ | ++.+............ ..+++||||+|+|||++++++++++........++++++.+.. ..+...+
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~--~~~~~~~ 83 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFI--REFADAL 83 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHH--HHHHHHH
T ss_pred ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHH--HHHHHHH
Confidence 788886 4 3444555665555433 2349999999999999999999987542223467777664311 1111111
Q ss_pred -----HHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHH--HHHHHHHHHhcc-CcceEEEEecC-cc---ccccccc
Q psy12150 118 -----KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA--QAALRRTMEKET-KSTRFCLICNY-VS---CIIQPLT 185 (456)
Q Consensus 118 -----~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~--~~~Ll~~le~~~-~~~~lIl~~~~-~~---kl~~~l~ 185 (456)
..+.... ....+++|||++.+.... ++.|..+++... ....+|++++. +. .+.+.+.
T Consensus 84 ~~~~~~~~~~~~-----------~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~ 152 (219)
T PF00308_consen 84 RDGEIEEFKDRL-----------RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLR 152 (219)
T ss_dssp HTTSHHHHHHHH-----------CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHH
T ss_pred Hcccchhhhhhh-----------hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhh
Confidence 1111111 133599999999997653 677776665421 22346666654 32 3456677
Q ss_pred CCce---EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q psy12150 186 SRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246 (456)
Q Consensus 186 ~r~~---~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~ 246 (456)
+|.. .+++.+|+.++..+++++.+...|+.+++++++.|++..++|+|.+...|.++..++
T Consensus 153 SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 153 SRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRLDAYA 216 (219)
T ss_dssp HHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred hhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Confidence 8854 899999999999999999999999999999999999999999999999999987764
No 119
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.63 E-value=1.6e-14 Score=146.72 Aligned_cols=207 Identities=14% Similarity=0.180 Sum_probs=144.2
Q ss_pred Cccccc-ccH--HHHHHHHHHHhc-CCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHH--
Q psy12150 43 TIDDVI-EQQ--EVVSVLKKCLSG-ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK-- 116 (456)
Q Consensus 43 ~~~~iv-g~~--~~~~~l~~~l~~-~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~-- 116 (456)
+|++++ |.. ........+..+ +.+.+++||||+|+|||++++++++.+........++++++.+.. ..+...
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~--~~~~~~~~ 180 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL--NDLVDSMK 180 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH--HHHHHHHh
Confidence 788887 432 334555555553 233459999999999999999999987653333466777664311 111111
Q ss_pred ---HHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH--HHHHHHHHHHHhcc-CcceEEEEecC-c---ccccccccC
Q psy12150 117 ---VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--AAQAALRRTMEKET-KSTRFCLICNY-V---SCIIQPLTS 186 (456)
Q Consensus 117 ---l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~--~~~~~Ll~~le~~~-~~~~lIl~~~~-~---~kl~~~l~~ 186 (456)
+..+..... ....+++|||++.+.+ ..++.|...+.... ....+|++++. + ..+.+.+.+
T Consensus 181 ~~~~~~f~~~~~----------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S 250 (440)
T PRK14088 181 EGKLNEFREKYR----------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS 250 (440)
T ss_pred cccHHHHHHHHH----------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh
Confidence 111211110 0234999999998853 23455555554321 12345566653 3 235677888
Q ss_pred Cce---EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCHHHHHHHhC
Q psy12150 187 RCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNEDVLEVTG 261 (456)
Q Consensus 187 r~~---~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~--~~~~It~~~v~~~~~ 261 (456)
|+. .+.+.+|+.+....++++.++.+++.+++++++.|++..+||+|.+...|.++..++ .++.||.+.+.+++.
T Consensus 251 R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~ 330 (440)
T PRK14088 251 RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLK 330 (440)
T ss_pred HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 876 899999999999999999999999999999999999999999999999999987766 467899998887775
No 120
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.63 E-value=3.3e-14 Score=133.86 Aligned_cols=122 Identities=20% Similarity=0.245 Sum_probs=104.5
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecC------------cccccccccCCceEEEecCCCHHHHHHHHH
Q psy12150 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY------------VSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206 (456)
Q Consensus 139 ~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~------------~~kl~~~l~~r~~~i~f~~~~~~el~~~l~ 206 (456)
.|+||||+|.|.-+++..|.+.||..- .+++|+++|. |+-+...|..|...+...|++.++++.+++
T Consensus 293 GVLFIDEvHmLDIE~FsFlnrAlEse~-aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi~ 371 (450)
T COG1224 293 GVLFIDEVHMLDIECFSFLNRALESEL-APIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREIIR 371 (450)
T ss_pred ceEEEechhhhhHHHHHHHHHHhhccc-CcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHHH
Confidence 399999999999999999999998653 4667788874 455777899999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhC
Q psy12150 207 YICEQESVMCDFKALETLVETS-GGDMRRAITCLQSCARLK---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 207 ~~~~~~~~~i~~~~l~~L~~~s-~gdlr~~~~~L~~~~~~~---~~~~It~~~v~~~~~ 261 (456)
.+++.+++.+++++++.|+... ..++|.+++.|.-+...+ +++.|..+||..+-.
T Consensus 372 iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~ 430 (450)
T COG1224 372 IRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKE 430 (450)
T ss_pred HhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHH
Confidence 9999999999999999999875 568999999997554444 577899999987653
No 121
>CHL00176 ftsH cell division protein; Validated
Probab=99.63 E-value=1.9e-14 Score=151.24 Aligned_cols=207 Identities=19% Similarity=0.207 Sum_probs=138.2
Q ss_pred CCCcccccccHHHHHHHHHHH---hc--------CC-CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCc
Q psy12150 41 PKTIDDVIEQQEVVSVLKKCL---SG--------AD-LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (456)
Q Consensus 41 P~~~~~ivg~~~~~~~l~~~l---~~--------~~-~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~ 108 (456)
..+|+++.|.++.+..+.+.+ +. .. +.++||+||||||||+++++++..... +++.+++++..
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~-----p~i~is~s~f~ 253 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV-----PFFSISGSEFV 253 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CeeeccHHHHH
Confidence 358999999998887776664 21 12 234999999999999999999998643 56666665421
Q ss_pred Ch--HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH-----------HH---HHHHHHHHHhc--cCcceE
Q psy12150 109 GI--QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AA---QAALRRTMEKE--TKSTRF 170 (456)
Q Consensus 109 ~~--~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~-----------~~---~~~Ll~~le~~--~~~~~l 170 (456)
.. +.-...+..+..... ...|| ||||||+|.+.. .. ...|+..++.. ...+++
T Consensus 254 ~~~~g~~~~~vr~lF~~A~-----~~~P~----ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViV 324 (638)
T CHL00176 254 EMFVGVGAARVRDLFKKAK-----ENSPC----IVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIV 324 (638)
T ss_pred HHhhhhhHHHHHHHHHHHh-----cCCCc----EEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeE
Confidence 10 111112222222221 12344 999999998842 22 23344444432 345678
Q ss_pred EEEecCcccccccccCCc---eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhh
Q psy12150 171 CLICNYVSCIIQPLTSRC---SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITCLQSCARLK 246 (456)
Q Consensus 171 Il~~~~~~kl~~~l~~r~---~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g-dlr~~~~~L~~~~~~~ 246 (456)
|.++|.+..+.+++.+++ ..+.|..|+.++...+++.+++.... .++..+..+++.+.| +.+.+.+.+..++..+
T Consensus 325 IaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a 403 (638)
T CHL00176 325 IAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLNEAAILT 403 (638)
T ss_pred EEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 888888888888888654 38999999999999999999887332 346678889998887 5555555555544332
Q ss_pred ---CCCCCCHHHHHHHhCC
Q psy12150 247 ---GGEGIVNEDVLEVTGV 262 (456)
Q Consensus 247 ---~~~~It~~~v~~~~~~ 262 (456)
+...|+.+++.+++.+
T Consensus 404 ~r~~~~~It~~dl~~Ai~r 422 (638)
T CHL00176 404 ARRKKATITMKEIDTAIDR 422 (638)
T ss_pred HHhCCCCcCHHHHHHHHHH
Confidence 5667999999988754
No 122
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.62 E-value=1.4e-14 Score=157.61 Aligned_cols=207 Identities=16% Similarity=0.159 Sum_probs=150.8
Q ss_pred CCCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCcc-----ccceEEeeC
Q psy12150 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY-----RERILELNA 104 (456)
Q Consensus 30 ~~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~-----~~~~~e~n~ 104 (456)
....++.++.||.++++++|+++.++++...+.+...++.+|+||||||||++++.+++.+..+.. ...++.++.
T Consensus 172 ~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l 251 (852)
T TIGR03345 172 QYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDL 251 (852)
T ss_pred HHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeeh
Confidence 345677888899999999999999999999998888888999999999999999999998854322 233454444
Q ss_pred CCC----cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH-----HHH---HHHHHHHHhccCcceEEE
Q psy12150 105 SDD----RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----AAQ---AALRRTMEKETKSTRFCL 172 (456)
Q Consensus 105 ~~~----~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~-----~~~---~~Ll~~le~~~~~~~lIl 172 (456)
+.. ...+...+.+.......... + ...|+||||+|.+.+ ..+ +.|..++++. ...+|.
T Consensus 252 ~~l~ag~~~~ge~e~~lk~ii~e~~~~----~----~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~Ig 321 (852)
T TIGR03345 252 GLLQAGASVKGEFENRLKSVIDEVKAS----P----QPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIA 321 (852)
T ss_pred hhhhcccccchHHHHHHHHHHHHHHhc----C----CCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEE
Confidence 331 12233444444443332111 1 234999999999964 222 3577777754 466666
Q ss_pred EecC-----cccccccccCCceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHH
Q psy12150 173 ICNY-----VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ----ESVMCDFKALETLVETSGGD------MRRAIT 237 (456)
Q Consensus 173 ~~~~-----~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~----~~~~i~~~~l~~L~~~s~gd------lr~~~~ 237 (456)
+|+. .....++|.+||+.|.+++|+.++...+|+..... .++.++++++..++..+.+. +..++.
T Consensus 322 aTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAId 401 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVS 401 (852)
T ss_pred ecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHH
Confidence 6664 23468899999999999999999999997665543 46889999999999998653 567899
Q ss_pred HHHHHHHhh
Q psy12150 238 CLQSCARLK 246 (456)
Q Consensus 238 ~L~~~~~~~ 246 (456)
.|+.++...
T Consensus 402 lldea~a~~ 410 (852)
T TIGR03345 402 LLDTACARV 410 (852)
T ss_pred HHHHHHHHH
Confidence 998876544
No 123
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.61 E-value=2.4e-14 Score=142.96 Aligned_cols=207 Identities=19% Similarity=0.203 Sum_probs=135.2
Q ss_pred CCCcccccccHHHHHHHHHHHh----------c-C-CC-CeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC
Q psy12150 41 PKTIDDVIEQQEVVSVLKKCLS----------G-A-DL-PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (456)
Q Consensus 41 P~~~~~ivg~~~~~~~l~~~l~----------~-~-~~-~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~ 107 (456)
.-+|+++.|.+..++.+++.+. . | .+ .+++||||||||||++++++++.+.. .++.+.++..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~-----~fi~i~~s~l 215 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA-----TFIRVVGSEF 215 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEehHHH
Confidence 3589999999999988887763 1 1 12 23999999999999999999998644 3444443321
Q ss_pred c--ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH-----------HHHHHHHHH---HHh--ccCcce
Q psy12150 108 R--GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRT---MEK--ETKSTR 169 (456)
Q Consensus 108 ~--~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~-----------~~~~~Ll~~---le~--~~~~~~ 169 (456)
. ..+.-...+......... ..| .||||||+|.+.. ..+..+..+ ++. ....++
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~-----~~P----~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~ 286 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLARE-----NAP----SIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVK 286 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHh-----cCC----eEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEE
Confidence 0 011111122222222111 123 3999999998742 123333343 332 234577
Q ss_pred EEEEecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Q psy12150 170 FCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITCLQSCARL 245 (456)
Q Consensus 170 lIl~~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g-dlr~~~~~L~~~~~~ 245 (456)
+|+++|.++.+.+++.+ |+. .++|+.|+.++...+++..+.+.+.. .+-.++.++..+.| +...+.+.++.+...
T Consensus 287 VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l~~eA~~~ 365 (398)
T PTZ00454 287 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAICQEAGMQ 365 (398)
T ss_pred EEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 88899999999999876 543 79999999999999999888765543 23346777877755 455556666666554
Q ss_pred h---CCCCCCHHHHHHHhCC
Q psy12150 246 K---GGEGIVNEDVLEVTGV 262 (456)
Q Consensus 246 ~---~~~~It~~~v~~~~~~ 262 (456)
+ +...|+.+|+.+++..
T Consensus 366 A~r~~~~~i~~~df~~A~~~ 385 (398)
T PTZ00454 366 AVRKNRYVILPKDFEKGYKT 385 (398)
T ss_pred HHHcCCCccCHHHHHHHHHH
Confidence 4 4568999998877643
No 124
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=99.61 E-value=6.2e-15 Score=116.21 Aligned_cols=86 Identities=36% Similarity=0.544 Sum_probs=76.5
Q ss_pred cCCCchHHHHHhh---hCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhhcCCChh
Q psy12150 362 GVIPNPWIEKLLK---VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438 (456)
Q Consensus 362 g~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~s~~di~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~ 438 (456)
|.|||..++++++ +++|.+++..+++++..|||..||+++||+.+.+. ++|+..|.++++.+|++|+||+.|+++.
T Consensus 1 ~~p~~~~i~~i~~~~~~~~~~~~~~~~~~l~~~G~s~~~Il~~l~~~l~~~-~~~~~~k~~i~~~la~~e~rl~~G~~e~ 79 (89)
T PF08542_consen 1 DWPPPEVIEEILESCLNGDFKEARKKLYELLVEGYSASDILKQLHEVLVES-DIPDSQKAEILKILAEIEYRLSDGASEI 79 (89)
T ss_dssp TS--HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTS-TSSHHHHHHHHHHHHHHHHHHHTTC-HH
T ss_pred CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHhHHHHCCCCHH
Confidence 5688888988885 58999999999999988999999999999999998 8999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy12150 439 IQILDLGSIV 448 (456)
Q Consensus 439 ~ql~~l~~~~ 448 (456)
+|+.+++++|
T Consensus 80 lQl~alva~~ 89 (89)
T PF08542_consen 80 LQLEALVAAF 89 (89)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhC
Confidence 9999999987
No 125
>KOG0733|consensus
Probab=99.60 E-value=1.4e-14 Score=144.59 Aligned_cols=185 Identities=21% Similarity=0.226 Sum_probs=130.0
Q ss_pred CcccccccHHHHHHHHHHHh----------cCC-CCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcC-
Q psy12150 43 TIDDVIEQQEVVSVLKKCLS----------GAD-LPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG- 109 (456)
Q Consensus 43 ~~~~ivg~~~~~~~l~~~l~----------~~~-~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~- 109 (456)
+|+++-|.+..+.+|.+.+- -|- +|. +|||||||||||.+|++++.++.- +++.+++....+
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v-----Pf~~isApeivSG 262 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV-----PFLSISAPEIVSG 262 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC-----ceEeecchhhhcc
Confidence 58999999999988877652 122 333 999999999999999999999743 566666654211
Q ss_pred -hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHH-----------HHHHHHHHHhc------cCcceEE
Q psy12150 110 -IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA-----------QAALRRTMEKE------TKSTRFC 171 (456)
Q Consensus 110 -~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~-----------~~~Ll~~le~~------~~~~~lI 171 (456)
.++-.+.+++++..+... .|| ||||||+|.+++.. ...|+..|++. ...+++|
T Consensus 263 vSGESEkkiRelF~~A~~~-----aPc----ivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVI 333 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSN-----APC----IVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVI 333 (802)
T ss_pred cCcccHHHHHHHHHHHhcc-----CCe----EEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEE
Confidence 122233444444333222 355 99999999998642 23455566543 2346677
Q ss_pred EEecCcccccccccCCce---EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy12150 172 LICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242 (456)
Q Consensus 172 l~~~~~~kl~~~l~~r~~---~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~ 242 (456)
.++|.+..+.++|++-+. .|.+.-|++.+..++|+.+|+.-...- +-.+..|+..++|.+..-+..|-..
T Consensus 334 gATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~AL~~~ 406 (802)
T KOG0733|consen 334 GATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMALCRE 406 (802)
T ss_pred ecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHHHHHH
Confidence 778889999999987654 799999999999999999998644432 3346789999999877766665443
No 126
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.58 E-value=5e-14 Score=140.55 Aligned_cols=207 Identities=16% Similarity=0.194 Sum_probs=131.7
Q ss_pred CCCcccccccHHHHHHHHHHHhc------------CC-CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC
Q psy12150 41 PKTIDDVIEQQEVVSVLKKCLSG------------AD-LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (456)
Q Consensus 41 P~~~~~ivg~~~~~~~l~~~l~~------------~~-~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~ 107 (456)
.-+|+++.|.+..++.+.+++.. .. +.+++||||||||||++++++++.+... ++.+.+...
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~-----~~~v~~~~l 192 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-----FIRVVGSEL 192 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC-----EEecchHHH
Confidence 45789999999999999887642 11 2339999999999999999999987543 444433221
Q ss_pred cC--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH-----------HHHHHHHHHHHh-----ccCcce
Q psy12150 108 RG--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEK-----ETKSTR 169 (456)
Q Consensus 108 ~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~-----------~~~~~Ll~~le~-----~~~~~~ 169 (456)
.. .......+......... ..| .+|||||+|.+.. ..+..+.+++.. ....++
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~-----~~p----~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~ 263 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKE-----KAP----SIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVK 263 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHh-----cCC----cEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEE
Confidence 00 11111122222222111 122 2999999998842 233445454432 134677
Q ss_pred EEEEecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHHHh
Q psy12150 170 FCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGD-MRRAITCLQSCARL 245 (456)
Q Consensus 170 lIl~~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gd-lr~~~~~L~~~~~~ 245 (456)
+|+++|.+..+.+++.+ |+. .++|+.|+.++..++++..+...... ++..+..+++.+.|- .+.+.+.+..+...
T Consensus 264 vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~~l~~~A~~~ 342 (364)
T TIGR01242 264 VIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICTEAGMF 342 (364)
T ss_pred EEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 88889988888888875 443 79999999999999998877543322 122467778877653 23344444444333
Q ss_pred h---CCCCCCHHHHHHHhCC
Q psy12150 246 K---GGEGIVNEDVLEVTGV 262 (456)
Q Consensus 246 ~---~~~~It~~~v~~~~~~ 262 (456)
+ +...|+.+|+.+++..
T Consensus 343 a~~~~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 343 AIREERDYVTMDDFIKAVEK 362 (364)
T ss_pred HHHhCCCccCHHHHHHHHHH
Confidence 3 5678999999887653
No 127
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.58 E-value=7e-14 Score=137.50 Aligned_cols=215 Identities=17% Similarity=0.251 Sum_probs=150.8
Q ss_pred cchhccCCCCcccccc---cHHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCc
Q psy12150 34 PWVEKYRPKTIDDVIE---QQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (456)
Q Consensus 34 ~w~eky~P~~~~~ivg---~~~~~~~l~~~l~~~--~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~ 108 (456)
....+| +|++++. +..+......+.+.. ..++++|||+.|+|||++++++++.......+..++++...+..
T Consensus 79 ~l~~~y---tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~ 155 (408)
T COG0593 79 GLNPKY---TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT 155 (408)
T ss_pred cCCCCC---chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHH
Confidence 344455 4555553 333444555555533 24559999999999999999999998776555566666554421
Q ss_pred C--hHHHH-HHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH--HHHHHHHHHHhccCc-ceEEEEecCccc---
Q psy12150 109 G--IQVIR-DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--AQAALRRTMEKETKS-TRFCLICNYVSC--- 179 (456)
Q Consensus 109 ~--~~~i~-~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~--~~~~Ll~~le~~~~~-~~lIl~~~~~~k--- 179 (456)
. ...++ +.+..|-... ...+++|||++++... .++.+...++.-... -.+|++++.+.+
T Consensus 156 ~~~v~a~~~~~~~~Fk~~y------------~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 156 NDFVKALRDNEMEKFKEKY------------SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred HHHHHHHHhhhHHHHHHhh------------ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 1 11111 1222222222 1239999999998764 366665555432211 256677765432
Q ss_pred -ccccccCCce---EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCH
Q psy12150 180 -IIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVN 253 (456)
Q Consensus 180 -l~~~l~~r~~---~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~--~~~~It~ 253 (456)
+.+.|+||+. .+++.+|+.+....+|+..+...++.++++++..++....+|+|.+...|.++..++ .+..||.
T Consensus 224 ~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi 303 (408)
T COG0593 224 GLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITI 303 (408)
T ss_pred cccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcH
Confidence 4567888865 899999999999999999999999999999999999999999999999999998887 4668999
Q ss_pred HHHHHHhCCC
Q psy12150 254 EDVLEVTGVI 263 (456)
Q Consensus 254 ~~v~~~~~~~ 263 (456)
+.+.+++...
T Consensus 304 ~~v~e~L~~~ 313 (408)
T COG0593 304 DLVKEILKDL 313 (408)
T ss_pred HHHHHHHHHh
Confidence 9998877543
No 128
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.55 E-value=1.2e-13 Score=150.04 Aligned_cols=203 Identities=20% Similarity=0.236 Sum_probs=135.8
Q ss_pred cccccHHHHHHHHHHHhc----C--CCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHH-----
Q psy12150 46 DVIEQQEVVSVLKKCLSG----A--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIR----- 114 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~~----~--~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~----- 114 (456)
+++|++.+++.+.+++.. + +.++++|+||||||||++++++++.+.. +++.++.........+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~-----~~~~i~~~~~~~~~~i~g~~~~ 395 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR-----KFVRFSLGGVRDEAEIRGHRRT 395 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC-----CeEEEeCCCcccHHHHcCCCCc
Confidence 578999999998887642 1 2345999999999999999999999854 34455443322211111
Q ss_pred ------HHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHH----HHHHHHHHHhc---------------cCcce
Q psy12150 115 ------DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA----QAALRRTMEKE---------------TKSTR 169 (456)
Q Consensus 115 ------~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~----~~~Ll~~le~~---------------~~~~~ 169 (456)
..+........ ....||+|||+|.+.+.. .+.|++.|+.. ...++
T Consensus 396 ~~g~~~g~i~~~l~~~~----------~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 396 YVGAMPGRIIQGLKKAK----------TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred eeCCCCchHHHHHHHhC----------cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 01111111110 022399999999997532 36677777530 13577
Q ss_pred EEEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHHcC--CCHHHHHH
Q psy12150 170 FCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC-----EQ-----ESVMCDFKALETLVETSG--GDMRRAIT 237 (456)
Q Consensus 170 lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~-----~~-----~~~~i~~~~l~~L~~~s~--gdlr~~~~ 237 (456)
||+++|....+.++|++|+..++|++++.++...+++..+ +. +++.++++++..|++... ..+|.+.+
T Consensus 466 ~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r 545 (775)
T TIGR00763 466 FIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLER 545 (775)
T ss_pred EEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHH
Confidence 8889999999999999999999999999999988887654 22 245789999999997542 35666666
Q ss_pred HHHHHHHhh-------CC--------CCCCHHHHHHHhCCC
Q psy12150 238 CLQSCARLK-------GG--------EGIVNEDVLEVTGVI 263 (456)
Q Consensus 238 ~L~~~~~~~-------~~--------~~It~~~v~~~~~~~ 263 (456)
.+++++... +. -.|+.+++...++..
T Consensus 546 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg~~ 586 (775)
T TIGR00763 546 QIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLGKP 586 (775)
T ss_pred HHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcCcc
Confidence 555543221 11 267777877777654
No 129
>KOG0738|consensus
Probab=99.55 E-value=7.3e-14 Score=132.90 Aligned_cols=170 Identities=23% Similarity=0.278 Sum_probs=109.8
Q ss_pred CcccccccHHHHHHHHHHH----------hcCCCC--eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcC-
Q psy12150 43 TIDDVIEQQEVVSVLKKCL----------SGADLP--HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG- 109 (456)
Q Consensus 43 ~~~~ivg~~~~~~~l~~~l----------~~~~~~--~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~- 109 (456)
.|+||.|..++++-|++++ ++.+-| .+|++||||||||.+|++++.+.+. .|+.++.+...+
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~t-----TFFNVSsstltSK 284 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGT-----TFFNVSSSTLTSK 284 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcC-----eEEEechhhhhhh
Confidence 6889999999988888775 344433 3999999999999999999999753 455665554221
Q ss_pred ----hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH------------HHHHHHHHHHhc---c--Ccc
Q psy12150 110 ----IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA------------AQAALRRTMEKE---T--KST 168 (456)
Q Consensus 110 ----~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~------------~~~~Ll~~le~~---~--~~~ 168 (456)
.+.+...+.+.+.... |+ +|||||+|.|... .-..|+-.|+.. . ..+
T Consensus 285 wRGeSEKlvRlLFemARfyA--------PS----tIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~ 352 (491)
T KOG0738|consen 285 WRGESEKLVRLLFEMARFYA--------PS----TIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKV 352 (491)
T ss_pred hccchHHHHHHHHHHHHHhC--------Cc----eeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccccccccee
Confidence 1223333334333322 22 9999999999642 233455444321 1 223
Q ss_pred eEEE-EecCcccccccccCCce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q psy12150 169 RFCL-ICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG 230 (456)
Q Consensus 169 ~lIl-~~~~~~kl~~~l~~r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g 230 (456)
++|+ ++|-++.+..++++|+. +|.++-|+.+.....|+..+. .-...++-.++.|++.+.|
T Consensus 353 VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~-~~~~~~~~~~~~lae~~eG 415 (491)
T KOG0738|consen 353 VMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLR-SVELDDPVNLEDLAERSEG 415 (491)
T ss_pred EEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhc-cccCCCCccHHHHHHHhcC
Confidence 5554 45779999999999998 666666666666665554443 3333455556777777655
No 130
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.55 E-value=1e-12 Score=125.67 Aligned_cols=219 Identities=17% Similarity=0.134 Sum_probs=136.2
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChH
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQ 111 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~ 111 (456)
..|+...-.|..|-.=.++..++..+...+..+ .+.++|+||+|+|||++++.+++.+..... ....+.... ....
T Consensus 10 ~~pF~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~--~~~~~~~~~-~~~~ 85 (269)
T TIGR03015 10 TKPFQLLPDPDFFYPSKGHKRAMAYLEYGLSQR-EGFILITGEVGAGKTTLIRNLLKRLDQERV--VAAKLVNTR-VDAE 85 (269)
T ss_pred CCCCCCCCCHHHhCCCHHHHHHHHHHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHhcCCCCe--EEeeeeCCC-CCHH
Confidence 456665555543322233455556666555533 234999999999999999999998753221 111111111 1111
Q ss_pred HHHH--------------------HHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhc---cCcc
Q psy12150 112 VIRD--------------------KVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE---TKST 168 (456)
Q Consensus 112 ~i~~--------------------~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~---~~~~ 168 (456)
.+.. .+..+...... . ..+.+++|||++.+.....+.|....+-. ...+
T Consensus 86 ~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~----~----~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~ 157 (269)
T TIGR03015 86 DLLRMVAADFGLETEGRDKAALLRELEDFLIEQFA----A----GKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLL 157 (269)
T ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHh----C----CCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeE
Confidence 1111 11111111000 0 13459999999999988777665443321 1223
Q ss_pred eEEEEecCc--cc----ccccccCCc-eEEEecCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHH
Q psy12150 169 RFCLICNYV--SC----IIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQES----VMCDFKALETLVETSGGDMRRAIT 237 (456)
Q Consensus 169 ~lIl~~~~~--~k----l~~~l~~r~-~~i~f~~~~~~el~~~l~~~~~~~~----~~i~~~~l~~L~~~s~gdlr~~~~ 237 (456)
.+++++... .. ....+.+|. ..+++++++.+++.+++...+...| ..+++++++.|++.++|++|.+..
T Consensus 158 ~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~ 237 (269)
T TIGR03015 158 QIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINI 237 (269)
T ss_pred EEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHH
Confidence 345555421 11 123466664 4889999999999999999988655 368999999999999999999888
Q ss_pred HHHHHHHhh---CCCCCCHHHHHHHhCC
Q psy12150 238 CLQSCARLK---GGEGIVNEDVLEVTGV 262 (456)
Q Consensus 238 ~L~~~~~~~---~~~~It~~~v~~~~~~ 262 (456)
.+..+...+ +.+.|+.++|..++..
T Consensus 238 l~~~~~~~a~~~~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 238 LCDRLLLSAFLEEKREIGGEEVREVIAE 265 (269)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 877765543 5678999999887754
No 131
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.54 E-value=1.5e-13 Score=148.87 Aligned_cols=174 Identities=20% Similarity=0.232 Sum_probs=119.3
Q ss_pred CCcccccccHHHHHHHHHHHh------------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCc
Q psy12150 42 KTIDDVIEQQEVVSVLKKCLS------------GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (456)
Q Consensus 42 ~~~~~ivg~~~~~~~l~~~l~------------~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~ 108 (456)
.+|+++.|.+.+++.|.+.+. +...+. +|||||||||||++++++++++.. +++.+++++..
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~-----~fi~v~~~~l~ 524 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA-----NFIAVRGPEIL 524 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEehHHHh
Confidence 479999999999998888764 122333 999999999999999999998753 56666655421
Q ss_pred --ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH------------HHHHHHHHHHh--ccCcceEEE
Q psy12150 109 --GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA------------AQAALRRTMEK--ETKSTRFCL 172 (456)
Q Consensus 109 --~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~------------~~~~Ll~~le~--~~~~~~lIl 172 (456)
..+.....+......+... ...+|||||+|.+.+. ..+.|+..|+. ....+++|.
T Consensus 525 ~~~vGese~~i~~~f~~A~~~---------~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~ 595 (733)
T TIGR01243 525 SKWVGESEKAIREIFRKARQA---------APAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIA 595 (733)
T ss_pred hcccCcHHHHHHHHHHHHHhc---------CCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEE
Confidence 1112222333333222111 2239999999988431 23445555653 345677888
Q ss_pred EecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCC
Q psy12150 173 ICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCD-FKALETLVETSGGD 231 (456)
Q Consensus 173 ~~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~-~~~l~~L~~~s~gd 231 (456)
++|.++.+.+++.+ |+. .+.|++|+.++..++++...++ ..++ +..++.|++.+.|.
T Consensus 596 aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~--~~~~~~~~l~~la~~t~g~ 656 (733)
T TIGR01243 596 ATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS--MPLAEDVDLEELAEMTEGY 656 (733)
T ss_pred eCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC--CCCCccCCHHHHHHHcCCC
Confidence 88999999999885 775 8999999999999999876654 3333 33578888887663
No 132
>KOG0727|consensus
Probab=99.52 E-value=7.1e-13 Score=119.37 Aligned_cols=201 Identities=18% Similarity=0.268 Sum_probs=127.9
Q ss_pred CcccccccHHHHHHHHHHHh------------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC--
Q psy12150 43 TIDDVIEQQEVVSVLKKCLS------------GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD-- 107 (456)
Q Consensus 43 ~~~~ivg~~~~~~~l~~~l~------------~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~-- 107 (456)
++.++-|.+-.++++++.++ +-.+|. +|+|||||||||.+++++++.... .++.++++..
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a-----~firvvgsefvq 227 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA-----AFIRVVGSEFVQ 227 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccch-----heeeeccHHHHH
Confidence 67888888888888887763 223333 999999999999999999987543 4666666541
Q ss_pred ----cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH-----------HHHHHHHHHHHh-----ccCc
Q psy12150 108 ----RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEK-----ETKS 167 (456)
Q Consensus 108 ----~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~-----------~~~~~Ll~~le~-----~~~~ 167 (456)
.+..-+++.++-. .. ..|+ +|||||+|.+.. +.|..|++.+.. ...+
T Consensus 228 kylgegprmvrdvfrla-ke--------naps----iifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~n 294 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLA-KE--------NAPS----IIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTN 294 (408)
T ss_pred HHhccCcHHHHHHHHHH-hc--------cCCc----EEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccc
Confidence 2222233322211 11 1222 999999998853 245566666653 3456
Q ss_pred ceEEEEecCcccccccccCCce---EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HcCCCHHHHHHHHHH
Q psy12150 168 TRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVE---TSGGDMRRAITCLQS 241 (456)
Q Consensus 168 ~~lIl~~~~~~kl~~~l~~r~~---~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~---~s~gdlr~~~~~L~~ 241 (456)
+.+|+++|....+.+++.+.+. .++|+-++..+-+-....+..+.+..-+-+.-+.+++ .++.|+..+.++.-.
T Consensus 295 vkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm 374 (408)
T KOG0727|consen 295 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGM 374 (408)
T ss_pred eEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhH
Confidence 7899999999999999987765 7999988888888888888877655423222233332 234444444333322
Q ss_pred HHHhhCCCCCCHHHHHHHhC
Q psy12150 242 CARLKGGEGIVNEDVLEVTG 261 (456)
Q Consensus 242 ~~~~~~~~~It~~~v~~~~~ 261 (456)
.+-....-.|...|+++...
T Consensus 375 ~avr~nryvvl~kd~e~ay~ 394 (408)
T KOG0727|consen 375 LAVRENRYVVLQKDFEKAYK 394 (408)
T ss_pred HHHHhcceeeeHHHHHHHHH
Confidence 22222344566667665543
No 133
>KOG0734|consensus
Probab=99.52 E-value=3.1e-13 Score=133.12 Aligned_cols=209 Identities=19% Similarity=0.200 Sum_probs=138.1
Q ss_pred hccCCCCcccccccHHHHHHHHHHHh-----------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeC
Q psy12150 37 EKYRPKTIDDVIEQQEVVSVLKKCLS-----------GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (456)
Q Consensus 37 eky~P~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~ 104 (456)
++-.-.+|+|+.|.++.+.+|.+.++ +|+.|. +||+||||||||.+|++++.+.. .++++..+
T Consensus 296 ~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~-----VPFF~~sG 370 (752)
T KOG0734|consen 296 EQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG-----VPFFYASG 370 (752)
T ss_pred hhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC-----CCeEeccc
Confidence 34445679999999999887776653 566766 99999999999999999998753 34555555
Q ss_pred CCCcC--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH-----------HHHHHHHHHHhc--cCcce
Q psy12150 105 SDDRG--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA-----------AQAALRRTMEKE--TKSTR 169 (456)
Q Consensus 105 ~~~~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~-----------~~~~Ll~~le~~--~~~~~ 169 (456)
+.... ++.=...++++...+. ..-|| ||||||+|.+... ..+.|+--|+.. ...++
T Consensus 371 SEFdEm~VGvGArRVRdLF~aAk-----~~APc----IIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiI 441 (752)
T KOG0734|consen 371 SEFDEMFVGVGARRVRDLFAAAK-----ARAPC----IIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGII 441 (752)
T ss_pred cchhhhhhcccHHHHHHHHHHHH-----hcCCe----EEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceE
Confidence 54211 1111233344433321 12455 9999999988532 234444444432 34577
Q ss_pred EEEEecCcccccccccCCce---EEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCH-HHHHHHHHHHHH
Q psy12150 170 FCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCD-FKALETLVETSGGDM-RRAITCLQSCAR 244 (456)
Q Consensus 170 lIl~~~~~~kl~~~l~~r~~---~i~f~~~~~~el~~~l~~~~~~~~~~i~-~~~l~~L~~~s~gdl-r~~~~~L~~~~~ 244 (456)
+|.++|.+..++++|.+.+. .+..+.|+..-..++|+.++.+ +.++ +-....|++-+.|.- -.+-|.+..++.
T Consensus 442 vigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k--i~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAl 519 (752)
T KOG0734|consen 442 VIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK--IPLDEDVDPKIIARGTPGFSGADLANLVNQAAL 519 (752)
T ss_pred EEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc--CCcccCCCHhHhccCCCCCchHHHHHHHHHHHH
Confidence 77788889999999987654 7888888888888899888864 3333 223556677776633 334455555555
Q ss_pred hh---CCCCCCHHHHHHHhC
Q psy12150 245 LK---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 245 ~~---~~~~It~~~v~~~~~ 261 (456)
++ +...+|..+++-.-.
T Consensus 520 kAa~dga~~VtM~~LE~akD 539 (752)
T KOG0734|consen 520 KAAVDGAEMVTMKHLEFAKD 539 (752)
T ss_pred HHHhcCcccccHHHHhhhhh
Confidence 55 567889888875543
No 134
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.52 E-value=3.7e-13 Score=128.98 Aligned_cols=102 Identities=25% Similarity=0.277 Sum_probs=78.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecC------------cccccccccCCceEEEecCCCHHHHHHHHHH
Q psy12150 140 IVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY------------VSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207 (456)
Q Consensus 140 iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~------------~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~ 207 (456)
|+||||+|.|.-+++..|.+.+|..- .+++|+++|+ ++-++..|.+|+..+...|++.+++.+++.-
T Consensus 281 VLFIDEvHmLDiEcFsfLnralEs~~-sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il~i 359 (398)
T PF06068_consen 281 VLFIDEVHMLDIECFSFLNRALESEL-SPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQILKI 359 (398)
T ss_dssp EEEEESGGGSBHHHHHHHHHHHTSTT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHHHH
T ss_pred eEEecchhhccHHHHHHHHHHhcCCC-CcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHHHh
Confidence 99999999999999999999998653 4678888884 2345667899999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHH
Q psy12150 208 ICEQESVMCDFKALETLVETS-GGDMRRAITCLQSC 242 (456)
Q Consensus 208 ~~~~~~~~i~~~~l~~L~~~s-~gdlr~~~~~L~~~ 242 (456)
+|+.+++.+++++++.|.... ..++|.+++.|.-+
T Consensus 360 R~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a 395 (398)
T PF06068_consen 360 RAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPA 395 (398)
T ss_dssp HHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHH
T ss_pred hhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhh
Confidence 999999999999999999865 57899999988654
No 135
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.52 E-value=3.6e-13 Score=141.09 Aligned_cols=220 Identities=17% Similarity=0.185 Sum_probs=148.7
Q ss_pred chhccCCCCcccccccHHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHH
Q psy12150 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGAD--LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQV 112 (456)
Q Consensus 35 w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~--~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~ 112 (456)
=.++++..+++.++|+...++.+.+.++.-. ..+++|+|++||||+++|++++..... ...+++.+||..... ..
T Consensus 186 ~~~~~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r--~~~pfv~i~c~~~~~-~~ 262 (534)
T TIGR01817 186 EIARRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR--AKRPFVKVNCAALSE-TL 262 (534)
T ss_pred cccccccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC--CCCCeEEeecCCCCH-HH
Confidence 3445666789999999998888877775432 234999999999999999999987543 233789999987422 22
Q ss_pred HHHHHHHHHHhhccCC--CCCCCC-CCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc-
Q psy12150 113 IRDKVKTFAQQTASGF--NQDGKP-CPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV- 177 (456)
Q Consensus 113 i~~~l~~~~~~~~~~~--~~~~~~-~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~- 177 (456)
+...+.......+.+. ...|.. .++..+|||||++.|+...|..|++++++.. ..+.+|++++..
T Consensus 263 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l 342 (534)
T TIGR01817 263 LESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDL 342 (534)
T ss_pred HHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCH
Confidence 2221110000000000 000000 1344599999999999999999999997642 135677777642
Q ss_pred ------ccccccccCCce--EEEecCCC--HHHHHHHHHHHHH----HcC--CCCCHHHHHHHHHH-cCCCHHHHHHHHH
Q psy12150 178 ------SCIIQPLTSRCS--KFRFKPLA--ENTMLTRLQYICE----QES--VMCDFKALETLVET-SGGDMRRAITCLQ 240 (456)
Q Consensus 178 ------~kl~~~l~~r~~--~i~f~~~~--~~el~~~l~~~~~----~~~--~~i~~~~l~~L~~~-s~gdlr~~~~~L~ 240 (456)
..+.+.|..|+. .+.++|+. .+++..++...+. +.+ ..+++++++.|..+ ++||+|++.+.++
T Consensus 343 ~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~ 422 (534)
T TIGR01817 343 EEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLE 422 (534)
T ss_pred HHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHH
Confidence 123344555554 57778886 4666655555443 222 56899999999988 5999999999999
Q ss_pred HHHHhhCCCCCCHHHHH
Q psy12150 241 SCARLKGGEGIVNEDVL 257 (456)
Q Consensus 241 ~~~~~~~~~~It~~~v~ 257 (456)
.++..+.+..|+.+++.
T Consensus 423 ~a~~~~~~~~I~~~~l~ 439 (534)
T TIGR01817 423 RTATLSRSGTITRSDFS 439 (534)
T ss_pred HHHHhCCCCcccHHHCc
Confidence 99887777789998875
No 136
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.51 E-value=3.2e-13 Score=137.58 Aligned_cols=181 Identities=19% Similarity=0.232 Sum_probs=115.9
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHhc------------CCCC-eEEEECCCCCcHHHHHHHHHHHhcCCc-----
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG------------ADLP-HFLFYGPPGTGKTSTMIAACHQLFGDM----- 94 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~------------~~~~-~~Ll~G~~G~GKT~~a~~l~~~l~~~~----- 94 (456)
....+++.+.+|++|.|.+..++.++..+.- -.++ ++|||||||||||++++++++.+....
T Consensus 170 ~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~ 249 (512)
T TIGR03689 170 DLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETG 249 (512)
T ss_pred cceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccC
Confidence 3445667678999999999999988887631 1223 399999999999999999999986431
Q ss_pred cccceEEeeCCCCc--ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH------------HHHHHHHH
Q psy12150 95 YRERILELNASDDR--GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA------------AQAALRRT 160 (456)
Q Consensus 95 ~~~~~~e~n~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~------------~~~~Ll~~ 160 (456)
....++.+..++.. ........+.......... ...+.|+ ||||||+|.+... ....|+..
T Consensus 250 ~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~-a~~g~p~----IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 250 DKSYFLNIKGPELLNKYVGETERQIRLIFQRAREK-ASDGRPV----IVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred CceeEEeccchhhcccccchHHHHHHHHHHHHHHH-hhcCCCc----eEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 11223333322210 1111111222211111100 0112344 9999999988532 12455666
Q ss_pred HHhcc--CcceEEEEecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q psy12150 161 MEKET--KSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFK 219 (456)
Q Consensus 161 le~~~--~~~~lIl~~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~ 219 (456)
|+... ..+++|.++|.+..+.+++.+ |+. .|+|++|+.++..++++.++.. ...++++
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~~~ 387 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLDAD 387 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCchHH
Confidence 65432 467788889999999999987 654 6999999999999999988764 3445333
No 137
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.51 E-value=1.1e-12 Score=131.10 Aligned_cols=213 Identities=16% Similarity=0.156 Sum_probs=148.3
Q ss_pred CCcccccccHHHHHHHHHHHhcCCC--CeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHH
Q psy12150 42 KTIDDVIEQQEVVSVLKKCLSGADL--PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119 (456)
Q Consensus 42 ~~~~~ivg~~~~~~~l~~~l~~~~~--~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~ 119 (456)
....+++|+...++++.+.+.+-.. .++||+|++||||..+|++|++.-.. ...+++.+||.. ...+.+...+..
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R--~~~PFVavNcaA-ip~~l~ESELFG 214 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPR--AKGPFIAVNCAA-IPENLLESELFG 214 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcc--cCCCceeeeccc-CCHHHHHHHhhc
Confidence 3567899999999998888764322 34999999999999999999997433 345899999986 333334433333
Q ss_pred HHHhhccCCCCCCCCC----CCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc-------
Q psy12150 120 FAQQTASGFNQDGKPC----PPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV------- 177 (456)
Q Consensus 120 ~~~~~~~~~~~~~~~~----~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~------- 177 (456)
....++.+-. ..+.+ ++...+|+||+..|+-+.|..|++.|++.. .++++|.+|+..
T Consensus 215 hekGAFTGA~-~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~ 293 (464)
T COG2204 215 HEKGAFTGAI-TRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAA 293 (464)
T ss_pred ccccCcCCcc-cccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHc
Confidence 3333222211 11111 466699999999999999999999998632 346788887742
Q ss_pred ccccccccCCceEEEe--cCCC--HHHH----HHHHHHHHHHcC---CCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHh
Q psy12150 178 SCIIQPLTSRCSKFRF--KPLA--ENTM----LTRLQYICEQES---VMCDFKALETLVET-SGGDMRRAITCLQSCARL 245 (456)
Q Consensus 178 ~kl~~~l~~r~~~i~f--~~~~--~~el----~~~l~~~~~~~~---~~i~~~~l~~L~~~-s~gdlr~~~~~L~~~~~~ 245 (456)
.++-+.|.-|..++.+ +|+. .+++ ..++++.+++.| ..++++++..|..+ ++||+|++.|.++.++..
T Consensus 294 G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il 373 (464)
T COG2204 294 GRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVIL 373 (464)
T ss_pred CCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhc
Confidence 2344455566554444 4443 2333 344555565554 46899999998876 599999999999999988
Q ss_pred hCCCCCCHHHHHH
Q psy12150 246 KGGEGIVNEDVLE 258 (456)
Q Consensus 246 ~~~~~It~~~v~~ 258 (456)
+.+..|+.+++..
T Consensus 374 ~~~~~i~~~~l~~ 386 (464)
T COG2204 374 SEGPEIEVEDLPL 386 (464)
T ss_pred CCccccchhhccc
Confidence 8888899888653
No 138
>KOG0731|consensus
Probab=99.50 E-value=9.6e-13 Score=137.11 Aligned_cols=209 Identities=19% Similarity=0.209 Sum_probs=143.7
Q ss_pred cCCCCcccccccHHHHHHHHHHHh-----------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCC
Q psy12150 39 YRPKTIDDVIEQQEVVSVLKKCLS-----------GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD 106 (456)
Q Consensus 39 y~P~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~ 106 (456)
-.+-+|.|+.|.++++.+|.++++ +.++|. +||+||||||||.+|+++|.+. ..+++.+++++
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-----gVPF~svSGSE 379 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSVSGSE 379 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-----CCceeeechHH
Confidence 345689999999999988877763 344555 9999999999999999999884 34677777776
Q ss_pred CcCh--HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH------------HHHHHHHHH---Hh--ccCc
Q psy12150 107 DRGI--QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA------------AQAALRRTM---EK--ETKS 167 (456)
Q Consensus 107 ~~~~--~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~------------~~~~Ll~~l---e~--~~~~ 167 (456)
.... ..-...++++...+.. ..|| +|+|||+|.+... ....|.+++ +. ....
T Consensus 380 FvE~~~g~~asrvr~lf~~ar~-----~aP~----iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 380 FVEMFVGVGASRVRDLFPLARK-----NAPS----IIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred HHHHhcccchHHHHHHHHHhhc-----cCCe----EEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 3211 1112233444333221 2344 9999999987432 223444444 32 3345
Q ss_pred ceEEEEecCcccccccccCCce---EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH-HHHH
Q psy12150 168 TRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL-QSCA 243 (456)
Q Consensus 168 ~~lIl~~~~~~kl~~~l~~r~~---~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L-~~~~ 243 (456)
++++.+||.+.-+.+++.+-+. .+....|+.....++++.+++.-....++..+..++..++|....-+..+ ..++
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa 530 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAA 530 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHH
Confidence 7777788888888999887665 78999999999999999998876665566666669999988555433333 3333
Q ss_pred Hhh---CCCCCCHHHHHHHhC
Q psy12150 244 RLK---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 244 ~~~---~~~~It~~~v~~~~~ 261 (456)
..+ +...|+..++..++.
T Consensus 531 ~~a~r~~~~~i~~~~~~~a~~ 551 (774)
T KOG0731|consen 531 LLAARKGLREIGTKDLEYAIE 551 (774)
T ss_pred HHHHHhccCccchhhHHHHHH
Confidence 322 577899988887776
No 139
>KOG0730|consensus
Probab=99.49 E-value=8e-13 Score=133.87 Aligned_cols=257 Identities=18% Similarity=0.211 Sum_probs=180.0
Q ss_pred CCCCcccccccHHHHHHHHHHHh------------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCC
Q psy12150 40 RPKTIDDVIEQQEVVSVLKKCLS------------GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD 106 (456)
Q Consensus 40 ~P~~~~~ivg~~~~~~~l~~~l~------------~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~ 106 (456)
.|-+ .++.|....+..++..+. +-++|. +|+|||||+|||.++++++++... .++.+|+..
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a-----~~~~i~~pe 253 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA-----FLFLINGPE 253 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCc-----eeEecccHH
Confidence 3444 577777777777666652 122333 999999999999999999998643 566666653
Q ss_pred C------cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH----------HHHHHHHHHHhcc--Ccc
Q psy12150 107 D------RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA----------AQAALRRTMEKET--KST 168 (456)
Q Consensus 107 ~------~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~----------~~~~Ll~~le~~~--~~~ 168 (456)
. .....++..+........ | .+++|||+|.+.+. ....|+.+++... ..+
T Consensus 254 li~k~~gEte~~LR~~f~~a~k~~~--------p----sii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~v 321 (693)
T KOG0730|consen 254 LISKFPGETESNLRKAFAEALKFQV--------P----SIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKV 321 (693)
T ss_pred HHHhcccchHHHHHHHHHHHhccCC--------C----eeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcE
Confidence 1 112223333333322211 2 39999999999751 2345666666544 567
Q ss_pred eEEEEecCcccccccccC-Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q psy12150 169 RFCLICNYVSCIIQPLTS-RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246 (456)
Q Consensus 169 ~lIl~~~~~~kl~~~l~~-r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~ 246 (456)
+++.++|.+..+.+++++ |+. .+.+.-|+..+..++++..++..+.. ++..+..++..++|.+..-+..+-+.+...
T Consensus 322 ivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~ 400 (693)
T KOG0730|consen 322 IVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQ 400 (693)
T ss_pred EEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHH
Confidence 777788889999999986 554 79999999999999999999887765 678899999999997755444443333322
Q ss_pred CCCCCCHHHHHHHhCCCCHHHHHHHHcccchHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy12150 247 GGEGIVNEDVLEVTGVIPKPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLV 326 (456)
Q Consensus 247 ~~~~It~~~v~~~~~~~~~~~i~~l~~~~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~~~~~~~~~~~~~l~~~~~~~~ 326 (456)
..+. +.+++..+...+.+..+.+.+-. +..+.
T Consensus 401 ~~r~-~~~~~~~A~~~i~psa~Re~~ve-----------------------------------------------~p~v~ 432 (693)
T KOG0730|consen 401 ATRR-TLEIFQEALMGIRPSALREILVE-----------------------------------------------MPNVS 432 (693)
T ss_pred Hhhh-hHHHHHHHHhcCCchhhhheecc-----------------------------------------------CCCCC
Confidence 1112 66777777777766655555433 45566
Q ss_pred hcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCch
Q psy12150 327 ETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP 367 (456)
Q Consensus 327 ~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~ 367 (456)
|...|.+..+...||++. .|++.+.+.|...|.-||+
T Consensus 433 W~dIGGlE~lK~elq~~V----~~p~~~pe~F~r~Gi~ppk 469 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAV----EWPLKHPEKFARFGISPPK 469 (693)
T ss_pred hhhccCHHHHHHHHHHHH----hhhhhchHHHHHhcCCCCc
Confidence 888899999999999998 5889999999999976654
No 140
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.49 E-value=7.6e-13 Score=142.63 Aligned_cols=225 Identities=20% Similarity=0.234 Sum_probs=146.3
Q ss_pred CCCCcchhccCCCCcc----------cccccHHHHHHHHHHHhc------CCCCeEEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 30 NKPVPWVEKYRPKTID----------DVIEQQEVVSVLKKCLSG------ADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 30 ~~~~~w~eky~P~~~~----------~ivg~~~~~~~l~~~l~~------~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
-.+.||.. |.+.+++ +..|.+.+++++.+++.. ...+.++|+||||+|||++++.+++.+..
T Consensus 298 ~~~~pw~~-~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~- 375 (784)
T PRK10787 298 MVQVPWNA-RSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGR- 375 (784)
T ss_pred HHhCCCCC-CCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCC-
Confidence 45688954 3444332 478999999999877752 22334999999999999999999998754
Q ss_pred ccccceEEeeCCCCcChHHHHHHHHHHHHhhcc----CCCCCCCCCCCcEEEEEcCCCCccHHH----HHHHHHHHHhc-
Q psy12150 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTAS----GFNQDGKPCPPFKIVILDEADSMTHAA----QAALRRTMEKE- 164 (456)
Q Consensus 94 ~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~----~~~~~~~~~~~~~iviIDE~d~l~~~~----~~~Ll~~le~~- 164 (456)
+++.++.+.......+......+...... .....+ ....|+++||+|.+.+.. +++|++.++..
T Consensus 376 ----~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~---~~~~villDEidk~~~~~~g~~~~aLlevld~~~ 448 (784)
T PRK10787 376 ----KYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVG---VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQ 448 (784)
T ss_pred ----CEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcC---CCCCEEEEEChhhcccccCCCHHHHHHHHhcccc
Confidence 35555554433333332211111000000 000000 122399999999998764 57888888641
Q ss_pred --------------cCcceEEEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHH-----H-----cCCCCCHHH
Q psy12150 165 --------------TKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE-----Q-----ESVMCDFKA 220 (456)
Q Consensus 165 --------------~~~~~lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~-----~-----~~~~i~~~~ 220 (456)
-.++.||+++|.. .+.++|++|+..+.|.+++.++...+++..+. + ..+.+++++
T Consensus 449 ~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~a 527 (784)
T PRK10787 449 NVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSA 527 (784)
T ss_pred EEEEecccccccccCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHH
Confidence 1456777777765 59999999999999999999999998877763 1 125689999
Q ss_pred HHHHHHHcC--CCHHHHHHHHHHHHHhh------CC----CCCCHHHHHHHhCCCC
Q psy12150 221 LETLVETSG--GDMRRAITCLQSCARLK------GG----EGIVNEDVLEVTGVIP 264 (456)
Q Consensus 221 l~~L~~~s~--gdlr~~~~~L~~~~~~~------~~----~~It~~~v~~~~~~~~ 264 (456)
++.|++.+. .-.|.+.+.+++.+... ++ -.|+.+++.+.++...
T Consensus 528 i~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~~~ 583 (784)
T PRK10787 528 IIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQR 583 (784)
T ss_pred HHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCCCc
Confidence 999997542 23555555555443321 21 2588888888888653
No 141
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.49 E-value=5.2e-13 Score=128.29 Aligned_cols=151 Identities=17% Similarity=0.243 Sum_probs=106.6
Q ss_pred CCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCc------ChHHHHHHHHHHHHhhccCCCCCCCCCCC
Q psy12150 65 DLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR------GIQVIRDKVKTFAQQTASGFNQDGKPCPP 137 (456)
Q Consensus 65 ~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~------~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 137 (456)
++|. ++||||||||||.++++++++++. .++.+++.+.. +...+++....+.... ...+.||
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~-----~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a----~~~~aPc-- 214 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI-----EPIVMSAGELESENAGEPGKLIRQRYREAADII----KKKGKMS-- 214 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC-----CeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHh----hccCCCe--
Confidence 3444 999999999999999999999855 45666655421 2233444444333221 1234566
Q ss_pred cEEEEEcCCCCccHH---------H---HHHHHHHHHh--------------ccCcceEEEEecCcccccccccC--Cce
Q psy12150 138 FKIVILDEADSMTHA---------A---QAALRRTMEK--------------ETKSTRFCLICNYVSCIIQPLTS--RCS 189 (456)
Q Consensus 138 ~~iviIDE~d~l~~~---------~---~~~Ll~~le~--------------~~~~~~lIl~~~~~~kl~~~l~~--r~~ 189 (456)
||||||+|.+.+. . ...|+..+++ ....+.+|.++|+++.++++|.+ |+.
T Consensus 215 --VLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfD 292 (413)
T PLN00020 215 --CLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRME 292 (413)
T ss_pred --EEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCC
Confidence 9999999987542 1 1345555543 23457788889999999999988 665
Q ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Q psy12150 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGD 231 (456)
Q Consensus 190 ~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gd 231 (456)
.+ +..|+.++..++++.+++..+ ++...+..|+...+|.
T Consensus 293 k~-i~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 293 KF-YWAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQ 331 (413)
T ss_pred ce-eCCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCC
Confidence 53 458999999999999988764 5688899999998875
No 142
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.48 E-value=1.5e-12 Score=129.91 Aligned_cols=216 Identities=18% Similarity=0.190 Sum_probs=150.9
Q ss_pred cCCCCcccccccHHHHHHHHHHHhcCCC-C-eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHH
Q psy12150 39 YRPKTIDDVIEQQEVVSVLKKCLSGADL-P-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK 116 (456)
Q Consensus 39 y~P~~~~~ivg~~~~~~~l~~~l~~~~~-~-~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~ 116 (456)
+.+-+|++|+|....+.++.+.++.... + .+|+.|++||||..+|+++++.-.. .+.+|+.+||.. ....-+...
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R--~~~PFIaiNCaA-iPe~LlESE 315 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPR--ANGPFIAINCAA-IPETLLESE 315 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcc--cCCCeEEEeccc-CCHHHHHHH
Confidence 3455899999998888777777665432 2 3999999999999999999997433 345899999986 333444455
Q ss_pred HHHHHHhhccCCCCCCCCC----CCcEEEEEcCCCCccHHHHHHHHHHHHhc-----------cCcceEEEEecCc-c--
Q psy12150 117 VKTFAQQTASGFNQDGKPC----PPFKIVILDEADSMTHAAQAALRRTMEKE-----------TKSTRFCLICNYV-S-- 178 (456)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~----~~~~iviIDE~d~l~~~~~~~Ll~~le~~-----------~~~~~lIl~~~~~-~-- 178 (456)
+..+...++.+....|+++ ++...+|+||+..|+..-|..|++.|++. +..+++|.++|.. .
T Consensus 316 LFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~ 395 (560)
T COG3829 316 LFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKM 395 (560)
T ss_pred HhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHH
Confidence 5555555555555555554 67779999999999999999999999863 2457788888753 2
Q ss_pred ----cccccccCCceE--EEecCCC--HHHHHHHHHHH----HHHcC---CCCCHHHHHHHHHH-cCCCHHHHHHHHHHH
Q psy12150 179 ----CIIQPLTSRCSK--FRFKPLA--ENTMLTRLQYI----CEQES---VMCDFKALETLVET-SGGDMRRAITCLQSC 242 (456)
Q Consensus 179 ----kl~~~l~~r~~~--i~f~~~~--~~el~~~l~~~----~~~~~---~~i~~~~l~~L~~~-s~gdlr~~~~~L~~~ 242 (456)
.+-..|.-|..+ +.++|+- ++++....... .++.+ ..++++++..|.++ ++||+|++-|.++.+
T Consensus 396 i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~ 475 (560)
T COG3829 396 IAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERA 475 (560)
T ss_pred HhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 223334444443 4445553 24444433333 33333 23889999998875 699999999999999
Q ss_pred HHhh-CCCCCCHHHHH
Q psy12150 243 ARLK-GGEGIVNEDVL 257 (456)
Q Consensus 243 ~~~~-~~~~It~~~v~ 257 (456)
..+. .+..|+.+++.
T Consensus 476 v~~~~~~~~I~~~~lp 491 (560)
T COG3829 476 VNLVESDGLIDADDLP 491 (560)
T ss_pred HhccCCcceeehhhcc
Confidence 8765 45567777765
No 143
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.48 E-value=4.8e-12 Score=120.29 Aligned_cols=199 Identities=15% Similarity=0.113 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHH---------HHHHHH
Q psy12150 51 QEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD---------KVKTFA 121 (456)
Q Consensus 51 ~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~---------~l~~~~ 121 (456)
...++.+..++..+. +++|+||||||||++|+++++.++. +++.+++.......++.. ....+.
T Consensus 8 ~~l~~~~l~~l~~g~--~vLL~G~~GtGKT~lA~~la~~lg~-----~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~ 80 (262)
T TIGR02640 8 KRVTSRALRYLKSGY--PVHLRGPAGTGKTTLAMHVARKRDR-----PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFI 80 (262)
T ss_pred HHHHHHHHHHHhcCC--eEEEEcCCCCCHHHHHHHHHHHhCC-----CEEEEeCCccCCHHHHhhhhcccchhhHHHHHH
Confidence 345566677777653 6899999999999999999997643 456666654333222211 111111
Q ss_pred Hhh-----ccCCCCCCCC----CCCcEEEEEcCCCCccHHHHHHHHHHHHhcc----------------CcceEEEEecC
Q psy12150 122 QQT-----ASGFNQDGKP----CPPFKIVILDEADSMTHAAQAALRRTMEKET----------------KSTRFCLICNY 176 (456)
Q Consensus 122 ~~~-----~~~~~~~~~~----~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~----------------~~~~lIl~~~~ 176 (456)
... .........+ .....++++||++.+.++.++.|+..|++.. +..++|+++|.
T Consensus 81 ~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~ 160 (262)
T TIGR02640 81 HNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNP 160 (262)
T ss_pred HHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCC
Confidence 000 0000000000 0123499999999999999999999997521 24567888875
Q ss_pred c-----ccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc------C----CCHHHHHHHHHH
Q psy12150 177 V-----SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETS------G----GDMRRAITCLQS 241 (456)
Q Consensus 177 ~-----~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s------~----gdlr~~~~~L~~ 241 (456)
. ..+.+++..|+..+.+..|+.++..+++...+ .++++.++.+++.. + -.+|.++...+.
T Consensus 161 ~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~ 235 (262)
T TIGR02640 161 VEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEV 235 (262)
T ss_pred ccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHH
Confidence 3 34567799999999999999999999988764 35777776665432 1 137888888888
Q ss_pred HHHhhCCCCCCHHHHHHHhC
Q psy12150 242 CARLKGGEGIVNEDVLEVTG 261 (456)
Q Consensus 242 ~~~~~~~~~It~~~v~~~~~ 261 (456)
+..++....++.+++.+++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~ 255 (262)
T TIGR02640 236 ATQQDIPVDVDDEDFVDLCI 255 (262)
T ss_pred HHHcCCCCCCCcHHHHHHHH
Confidence 87776666788899887764
No 144
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.48 E-value=1.8e-12 Score=118.40 Aligned_cols=190 Identities=19% Similarity=0.248 Sum_probs=132.2
Q ss_pred hccCCCCcccccccHHHHHHHH----HHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHH
Q psy12150 37 EKYRPKTIDDVIEQQEVVSVLK----KCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQV 112 (456)
Q Consensus 37 eky~P~~~~~ivg~~~~~~~l~----~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~ 112 (456)
....|-.+++++|-+..++.|. .++++....|+||+|++|||||++++++..++..... .++++...+......
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GL--RlIev~k~~L~~l~~ 96 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGL--RLIEVSKEDLGDLPE 96 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCc--eEEEECHHHhccHHH
Confidence 4456778999999887776654 4455555455999999999999999999999877654 788887776555555
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH-HHHHHHHHH----HhccCcceEEEEecCcccccc-----
Q psy12150 113 IRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA-AQAALRRTM----EKETKSTRFCLICNYVSCIIQ----- 182 (456)
Q Consensus 113 i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~-~~~~Ll~~l----e~~~~~~~lIl~~~~~~kl~~----- 182 (456)
+.+.+. ..+ .+=|||+||..+=..+ ....|...| +..|.++++..|+|.++-+..
T Consensus 97 l~~~l~---~~~------------~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~ 161 (249)
T PF05673_consen 97 LLDLLR---DRP------------YKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDR 161 (249)
T ss_pred HHHHHh---cCC------------CCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhc
Confidence 444433 222 1229999997654333 334444444 456788888888876432211
Q ss_pred ------------------cccCCce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH-----HHHHHHcCCCHHHHHHH
Q psy12150 183 ------------------PLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKAL-----ETLVETSGGDMRRAITC 238 (456)
Q Consensus 183 ------------------~l~~r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l-----~~L~~~s~gdlr~~~~~ 238 (456)
+|..|+. .+.|.+++.++..+++...+++.|+.++++.+ +.-..+.+.+-|.|.+.
T Consensus 162 ~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF 241 (249)
T PF05673_consen 162 EDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTARQF 241 (249)
T ss_pred cCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 1234444 89999999999999999999999999996444 33334445678888777
Q ss_pred HHHHH
Q psy12150 239 LQSCA 243 (456)
Q Consensus 239 L~~~~ 243 (456)
++.++
T Consensus 242 ~~~l~ 246 (249)
T PF05673_consen 242 IDDLA 246 (249)
T ss_pred HHHHh
Confidence 76553
No 145
>KOG0733|consensus
Probab=99.48 E-value=8.4e-13 Score=132.06 Aligned_cols=186 Identities=18% Similarity=0.244 Sum_probs=126.0
Q ss_pred CcccccccHHHHHHHHHHHh------------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC--
Q psy12150 43 TIDDVIEQQEVVSVLKKCLS------------GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD-- 107 (456)
Q Consensus 43 ~~~~ivg~~~~~~~l~~~l~------------~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~-- 107 (456)
+|+++-+.+++..+|..++- +-..|. +|++||||||||.+|++++++... +|+.+.+...
T Consensus 509 tW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~-----NFisVKGPELlN 583 (802)
T KOG0733|consen 509 TWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGA-----NFISVKGPELLN 583 (802)
T ss_pred ChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccC-----ceEeecCHHHHH
Confidence 68898888988888877763 122333 999999999999999999998643 5666544431
Q ss_pred cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH-----------HHHHHHHHHHhc--cCcceEEEEe
Q psy12150 108 RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA-----------AQAALRRTMEKE--TKSTRFCLIC 174 (456)
Q Consensus 108 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~-----------~~~~Ll~~le~~--~~~~~lIl~~ 174 (456)
..+++-...++..++.+.. ..|| |||+||+|.|.+. ..+.|+--|+.. ...+.+|.++
T Consensus 584 kYVGESErAVR~vFqRAR~-----saPC----VIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaAT 654 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARA-----SAPC----VIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAAT 654 (802)
T ss_pred HHhhhHHHHHHHHHHHhhc-----CCCe----EEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeec
Confidence 1123333444444444322 3566 9999999999652 234454444322 2346677778
Q ss_pred cCcccccccccCCce---EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc------CCCHHHHHHHHHHH
Q psy12150 175 NYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFK-ALETLVETS------GGDMRRAITCLQSC 242 (456)
Q Consensus 175 ~~~~kl~~~l~~r~~---~i~f~~~~~~el~~~l~~~~~~~~~~i~~~-~l~~L~~~s------~gdlr~~~~~L~~~ 242 (456)
|.+..+.+++.+-+. .+....|+.++..++|+.+.+..+..++++ .++.|+... |.|+..++++-..+
T Consensus 655 NRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~ 732 (802)
T KOG0733|consen 655 NRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASIL 732 (802)
T ss_pred CCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHH
Confidence 888999999987765 677788999999999999998666666544 467777643 34666555554433
No 146
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.48 E-value=8.9e-13 Score=129.39 Aligned_cols=209 Identities=19% Similarity=0.212 Sum_probs=144.6
Q ss_pred CCcccccccHHHHHHHHHHHhcCCCC--eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHH
Q psy12150 42 KTIDDVIEQQEVVSVLKKCLSGADLP--HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119 (456)
Q Consensus 42 ~~~~~ivg~~~~~~~l~~~l~~~~~~--~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~ 119 (456)
..+++++|......++.+.++.-.+. ++|++|++|+||+.+|++++.. ....+..+++.+||......-...+ +..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~-s~r~~~~PFI~~NCa~~~en~~~~e-LFG 152 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHAL-SARRAEAPFIAFNCAAYSENLQEAE-LFG 152 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHh-hhcccCCCEEEEEHHHhCcCHHHHH-Hhc
Confidence 46789999998888888888763332 2999999999999999999943 2222567899999998544332222 333
Q ss_pred HHHhhccCCCCCCCCC----CCcEEEEEcCCCCccHHHHHHHHHHHHh-----------ccCcceEEEEecCc--ccccc
Q psy12150 120 FAQQTASGFNQDGKPC----PPFKIVILDEADSMTHAAQAALRRTMEK-----------ETKSTRFCLICNYV--SCIIQ 182 (456)
Q Consensus 120 ~~~~~~~~~~~~~~~~----~~~~iviIDE~d~l~~~~~~~Ll~~le~-----------~~~~~~lIl~~~~~--~kl~~ 182 (456)
....++.+ +..++++ ++..++|+||++.|+...|..|+++|++ .+.++++|++++.. ..+.+
T Consensus 153 ~~kGaftG-a~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~ 231 (403)
T COG1221 153 HEKGAFTG-AQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLA 231 (403)
T ss_pred cccceeec-ccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHh
Confidence 33333333 3333333 5667999999999999999999999987 34567788777642 44555
Q ss_pred --cccCCce--EEEecCCCH--HHHHH----HHHHHHHHcCCCC---CHHHHHHHHHH-cCCCHHHHHHHHHHHHHhhCC
Q psy12150 183 --PLTSRCS--KFRFKPLAE--NTMLT----RLQYICEQESVMC---DFKALETLVET-SGGDMRRAITCLQSCARLKGG 248 (456)
Q Consensus 183 --~l~~r~~--~i~f~~~~~--~el~~----~l~~~~~~~~~~i---~~~~l~~L~~~-s~gdlr~~~~~L~~~~~~~~~ 248 (456)
.+..|.. .|+++|+.+ +++.. ++...+++.+..+ +++++..|..+ .+||+|++.|.++.++..+..
T Consensus 232 g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 232 GADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQASG 311 (403)
T ss_pred hcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhcc
Confidence 6666544 777877764 33333 3445555555443 35677776665 699999999999999987754
Q ss_pred CCCCH
Q psy12150 249 EGIVN 253 (456)
Q Consensus 249 ~~It~ 253 (456)
..++.
T Consensus 312 ~~~~~ 316 (403)
T COG1221 312 EGQDL 316 (403)
T ss_pred ccCCc
Confidence 44443
No 147
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.48 E-value=2.5e-12 Score=116.48 Aligned_cols=177 Identities=16% Similarity=0.182 Sum_probs=135.7
Q ss_pred HHHHHHHHhcCCCCe-EEEECCCC-CcHHHHHHHHHHHhcCCcc----ccceEEeeCC-------CCcChHHHHHHHHHH
Q psy12150 54 VSVLKKCLSGADLPH-FLFYGPPG-TGKTSTMIAACHQLFGDMY----RERILELNAS-------DDRGIQVIRDKVKTF 120 (456)
Q Consensus 54 ~~~l~~~l~~~~~~~-~Ll~G~~G-~GKT~~a~~l~~~l~~~~~----~~~~~e~n~~-------~~~~~~~i~~~l~~~ 120 (456)
++.+.+.++.+++.| |||.|..+ +||..++..+++.+.+... ..++..+... ...+++.+++....+
T Consensus 2 ~~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l 81 (263)
T PRK06581 2 IERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFL 81 (263)
T ss_pred hHHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHH
Confidence 467889999999988 99999998 9999999998888765211 1134444322 234677888876666
Q ss_pred HHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccCCceEEEecCCCHHH
Q psy12150 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200 (456)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~e 200 (456)
...+..+ ++||++|+++|.|+.++.++|++.+|+|++.++|+++++.+..+.+.++|||+.+.|..+....
T Consensus 82 ~~~p~~g---------~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~~ 152 (263)
T PRK06581 82 SKTSAIS---------GYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILHA 152 (263)
T ss_pred hhCcccC---------CcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHHH
Confidence 5554433 7889999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy12150 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242 (456)
Q Consensus 201 l~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~ 242 (456)
..++....+.- ..+..-++.|.+.+.-|........+.+
T Consensus 153 ~~e~~~~~~~p---~~~~~~l~~i~~~~~~d~~~w~~~~~~~ 191 (263)
T PRK06581 153 YNELYSQFIQP---IADNKTLDFINRFTTKDRELWLDFIDNL 191 (263)
T ss_pred HHHHHHHhccc---ccccHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 87776655432 2345557777776655555555444443
No 148
>KOG0739|consensus
Probab=99.48 E-value=4.3e-13 Score=123.49 Aligned_cols=175 Identities=18% Similarity=0.248 Sum_probs=118.1
Q ss_pred CcccccccHHHHHHHHHHH----------hcCCCC--eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCc--
Q psy12150 43 TIDDVIEQQEVVSVLKKCL----------SGADLP--HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR-- 108 (456)
Q Consensus 43 ~~~~ivg~~~~~~~l~~~l----------~~~~~~--~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~-- 108 (456)
.|+++.|.+..++.|++++ .+++.| .+|||||||+||+++|++++.+.+. .++.++.++..
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-----TFFSvSSSDLvSK 205 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-----TFFSVSSSDLVSK 205 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-----ceEEeehHHHHHH
Confidence 6999999999999999875 344433 3999999999999999999998653 56667666632
Q ss_pred ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHH----HH-------HHHHHHH---hccCcceEEEEe
Q psy12150 109 GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA----QA-------ALRRTME---KETKSTRFCLIC 174 (456)
Q Consensus 109 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~----~~-------~Ll~~le---~~~~~~~lIl~~ 174 (456)
..++....+..+...+.. .+|+ ||||||+|.+.... .+ .|+--|+ +....+.++-++
T Consensus 206 WmGESEkLVknLFemARe-----~kPS----IIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgAT 276 (439)
T KOG0739|consen 206 WMGESEKLVKNLFEMARE-----NKPS----IIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGAT 276 (439)
T ss_pred HhccHHHHHHHHHHHHHh-----cCCc----EEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecC
Confidence 223334444554444332 2333 99999999986421 11 1222232 223345555667
Q ss_pred cCcccccccccCCce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Q psy12150 175 NYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGD 231 (456)
Q Consensus 175 ~~~~kl~~~l~~r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gd 231 (456)
|-++.+..++++|+. +|.++-|.........+-.+-.....+++..+..|++.+.|.
T Consensus 277 NiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 277 NIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGY 334 (439)
T ss_pred CCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCC
Confidence 788999999999998 566655555554444554555555678999999999988763
No 149
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.47 E-value=1.2e-12 Score=128.05 Aligned_cols=206 Identities=16% Similarity=0.157 Sum_probs=134.4
Q ss_pred ccccHHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhh
Q psy12150 47 VIEQQEVVSVLKKCLSGAD--LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQT 124 (456)
Q Consensus 47 ivg~~~~~~~l~~~l~~~~--~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~ 124 (456)
++|....++.+.+.++.-. ..+++|+|++||||+++|++++..... ...+++.+||..... ..+...+.......
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r--~~~pfv~vnc~~~~~-~~l~~~lfG~~~g~ 77 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR--WQGPLVKLNCAALSE-NLLDSELFGHEAGA 77 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc--cCCCeEEEeCCCCCh-HHHHHHHhcccccc
Confidence 4677766666666554322 234999999999999999999986432 234789999986432 22222221111000
Q ss_pred ccCCC--CCCC-CCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc-------cccccc
Q psy12150 125 ASGFN--QDGK-PCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------SCIIQP 183 (456)
Q Consensus 125 ~~~~~--~~~~-~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~-------~kl~~~ 183 (456)
+.+.. ..|. ..++..+|||||++.|+...|..|+++|++.. ..+++|++++.. ..+.+.
T Consensus 78 ~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~d 157 (329)
T TIGR02974 78 FTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRAD 157 (329)
T ss_pred ccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHH
Confidence 00000 0000 01344599999999999999999999998643 345777777642 233455
Q ss_pred ccCCce--EEEecCCC--HHHHHHHHHHH----HHHcC----CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhCCCC
Q psy12150 184 LTSRCS--KFRFKPLA--ENTMLTRLQYI----CEQES----VMCDFKALETLVETS-GGDMRRAITCLQSCARLKGGEG 250 (456)
Q Consensus 184 l~~r~~--~i~f~~~~--~~el~~~l~~~----~~~~~----~~i~~~~l~~L~~~s-~gdlr~~~~~L~~~~~~~~~~~ 250 (456)
|..|+. .++++|+. .+++..++... +.+.| ..+++++++.|..+. +||+|++.+.++.++..+.+..
T Consensus 158 L~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~~~~~ 237 (329)
T TIGR02974 158 LLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGLEE 237 (329)
T ss_pred HHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCc
Confidence 666664 67778877 46666555444 33333 368999999999875 9999999999999888765556
Q ss_pred CCHHH
Q psy12150 251 IVNED 255 (456)
Q Consensus 251 It~~~ 255 (456)
++.++
T Consensus 238 ~~~~~ 242 (329)
T TIGR02974 238 APIDE 242 (329)
T ss_pred cchhh
Confidence 76665
No 150
>KOG1968|consensus
Probab=99.47 E-value=3e-13 Score=144.82 Aligned_cols=207 Identities=26% Similarity=0.382 Sum_probs=159.4
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhcC-----------CCC-----eEEEECCCCCcHHHHHHHHHHHhcCCcc
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGA-----------DLP-----HFLFYGPPGTGKTSTMIAACHQLFGDMY 95 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~-----------~~~-----~~Ll~G~~G~GKT~~a~~l~~~l~~~~~ 95 (456)
...|.++|+|....++.|.......+.+|+... ... .++++||||+|||+.+..+++.++.
T Consensus 307 ~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~--- 383 (871)
T KOG1968|consen 307 GAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGF--- 383 (871)
T ss_pred ccccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhccc---
Confidence 578999999999999999988887888888654 111 1499999999999999999998744
Q ss_pred ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCC--CCC-C--CCCcEEEEEcCCCCccHHH---HHHHHHHHHhccCc
Q psy12150 96 RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ--DGK-P--CPPFKIVILDEADSMTHAA---QAALRRTMEKETKS 167 (456)
Q Consensus 96 ~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~--~~~-~--~~~~~iviIDE~d~l~~~~---~~~Ll~~le~~~~~ 167 (456)
.++++|+++.++...+.+.+..+.......... .+- . ...+-||++||+|.+..+. ...+..++.+ ..
T Consensus 384 --~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~k--s~ 459 (871)
T KOG1968|consen 384 --KVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCKK--SS 459 (871)
T ss_pred --ceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHHHh--cc
Confidence 799999999888777777776654332211110 000 0 0234499999999998833 3444455552 22
Q ss_pred ceEEEEecCccc-ccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q psy12150 168 TRFCLICNYVSC-IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245 (456)
Q Consensus 168 ~~lIl~~~~~~k-l~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~ 245 (456)
..+|++||++.. ..+++.+.|..++|..|+.+.+..++..+|..+++.++++.++.+.+.++||+|++++.|+.+...
T Consensus 460 ~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~lq~~~~~ 538 (871)
T KOG1968|consen 460 RPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQLQFWSLS 538 (871)
T ss_pred CCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHHHhhhhcc
Confidence 346677887644 345677778999999999999999999999999999999999999999999999999999998543
No 151
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.46 E-value=1.3e-12 Score=139.79 Aligned_cols=211 Identities=16% Similarity=0.143 Sum_probs=144.2
Q ss_pred CCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCcc-----ccceEEeeCCCC----cCh
Q psy12150 40 RPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY-----RERILELNASDD----RGI 110 (456)
Q Consensus 40 ~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~-----~~~~~e~n~~~~----~~~ 110 (456)
+-..++.++|++..++.+.+.+......+++|+||||||||++++.++..+..... ...++.++.... ...
T Consensus 181 ~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~ 260 (758)
T PRK11034 181 RVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYR 260 (758)
T ss_pred HcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchh
Confidence 45678899999999999999998877777999999999999999999987643221 112333322210 111
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH---------HHHHHHHHHHHhccCcceEEEEecCc----
Q psy12150 111 QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH---------AAQAALRRTMEKETKSTRFCLICNYV---- 177 (456)
Q Consensus 111 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~---------~~~~~Ll~~le~~~~~~~lIl~~~~~---- 177 (456)
+...+.+..+....... ...+|||||+|.+.. +..+.|..++++ ....+|.+++..
T Consensus 261 Ge~e~rl~~l~~~l~~~---------~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 261 GDFEKRFKALLKQLEQD---------TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSN 329 (758)
T ss_pred hhHHHHHHHHHHHHHhc---------CCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCChHHHHH
Confidence 23333333332221111 223999999998832 123345556654 345666666642
Q ss_pred -ccccccccCCceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHHHHHHHHHhh
Q psy12150 178 -SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ----ESVMCDFKALETLVETSGG------DMRRAITCLQSCARLK 246 (456)
Q Consensus 178 -~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~----~~~~i~~~~l~~L~~~s~g------dlr~~~~~L~~~~~~~ 246 (456)
....++|.+|+..+.+++|+.++...+|+....+ .++.++++++..++..+.. -+..++..|+.++...
T Consensus 330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~ 409 (758)
T PRK11034 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARA 409 (758)
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhh
Confidence 2467889999999999999999999999876543 5788999999998877643 3568999998887533
Q ss_pred -------CCCCCCHHHHHHHhC
Q psy12150 247 -------GGEGIVNEDVLEVTG 261 (456)
Q Consensus 247 -------~~~~It~~~v~~~~~ 261 (456)
....|+.++|.++++
T Consensus 410 ~~~~~~~~~~~v~~~~i~~v~~ 431 (758)
T PRK11034 410 RLMPVSKRKKTVNVADIESVVA 431 (758)
T ss_pred ccCcccccccccChhhHHHHHH
Confidence 133588888887764
No 152
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.46 E-value=8e-13 Score=144.94 Aligned_cols=207 Identities=16% Similarity=0.160 Sum_probs=148.3
Q ss_pred CCCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCc-----cccceEEeeC
Q psy12150 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-----YRERILELNA 104 (456)
Q Consensus 30 ~~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~-----~~~~~~e~n~ 104 (456)
....++.++.+|..++.++|+++.++.+...+.+....+.+|+||||+|||++++.++..+.... ....++.++.
T Consensus 158 ~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~ 237 (852)
T TIGR03346 158 KYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM 237 (852)
T ss_pred HHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH
Confidence 45568899999999999999999999999999887777799999999999999999999874421 1234555543
Q ss_pred CCC----cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH--------HHHHHHHHHHHhccCcceEEE
Q psy12150 105 SDD----RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------AAQAALRRTMEKETKSTRFCL 172 (456)
Q Consensus 105 ~~~----~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~--------~~~~~Ll~~le~~~~~~~lIl 172 (456)
... .........+..+....... + ...||||||+|.+.+ +..+.|..++++ ....+|.
T Consensus 238 ~~l~a~~~~~g~~e~~l~~~l~~~~~~----~----~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~--g~i~~Ig 307 (852)
T TIGR03346 238 GALIAGAKYRGEFEERLKAVLNEVTKS----E----GQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GELHCIG 307 (852)
T ss_pred HHHhhcchhhhhHHHHHHHHHHHHHhc----C----CCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc--CceEEEE
Confidence 321 11122333333333222110 0 234999999998863 234555566654 3456666
Q ss_pred EecCc-----ccccccccCCceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC---C---HHHHHH
Q psy12150 173 ICNYV-----SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ----ESVMCDFKALETLVETSGG---D---MRRAIT 237 (456)
Q Consensus 173 ~~~~~-----~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~----~~~~i~~~~l~~L~~~s~g---d---lr~~~~ 237 (456)
+++.. ....+++.+|+..+.+..|+.++...+++....+ .++.++++++..++..+.+ | +..++.
T Consensus 308 aTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAid 387 (852)
T TIGR03346 308 ATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAID 387 (852)
T ss_pred eCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHH
Confidence 66532 3467899999999999999999999998876554 4677899999999988764 3 778999
Q ss_pred HHHHHHHhh
Q psy12150 238 CLQSCARLK 246 (456)
Q Consensus 238 ~L~~~~~~~ 246 (456)
.|+.+++..
T Consensus 388 lld~a~a~~ 396 (852)
T TIGR03346 388 LIDEAAARI 396 (852)
T ss_pred HHHHHHHHH
Confidence 999887654
No 153
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.46 E-value=2.6e-12 Score=139.35 Aligned_cols=183 Identities=17% Similarity=0.224 Sum_probs=122.1
Q ss_pred CCCcccccccHHHHHHHHHHHhc-----------C-C-CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC
Q psy12150 41 PKTIDDVIEQQEVVSVLKKCLSG-----------A-D-LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (456)
Q Consensus 41 P~~~~~ivg~~~~~~~l~~~l~~-----------~-~-~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~ 107 (456)
..+|+++.|.+..++.+.+++.. + . ..+++||||||||||++++++++.+.. .++.+++.+.
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~-----~~i~i~~~~i 248 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA-----YFISINGPEI 248 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC-----eEEEEecHHH
Confidence 35899999999999999887631 1 1 223999999999999999999998743 4566665431
Q ss_pred cC--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH-----------HHHHHHHHHHHhcc--CcceEEE
Q psy12150 108 RG--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEKET--KSTRFCL 172 (456)
Q Consensus 108 ~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~-----------~~~~~Ll~~le~~~--~~~~lIl 172 (456)
.. .......+..+....... .| .+|||||+|.+.. ..+..|+..++... ..+++|.
T Consensus 249 ~~~~~g~~~~~l~~lf~~a~~~-----~p----~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~ 319 (733)
T TIGR01243 249 MSKYYGESEERLREIFKEAEEN-----AP----SIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIG 319 (733)
T ss_pred hcccccHHHHHHHHHHHHHHhc-----CC----cEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEe
Confidence 11 111222233333222111 12 2999999998753 23456777776432 3455666
Q ss_pred EecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHH
Q psy12150 173 ICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCD-FKALETLVETSGGDMRRAITCL 239 (456)
Q Consensus 173 ~~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~-~~~l~~L~~~s~gdlr~~~~~L 239 (456)
++|.+..+.+++++ |+. .+.|..|+.++..++++...+. ..+. +..++.+++.++|....-+..+
T Consensus 320 atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~--~~l~~d~~l~~la~~t~G~~gadl~~l 388 (733)
T TIGR01243 320 ATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN--MPLAEDVDLDKLAEVTHGFVGADLAAL 388 (733)
T ss_pred ecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC--CCCccccCHHHHHHhCCCCCHHHHHHH
Confidence 78888888888876 443 7899999999999999866543 3343 4457889999988655444443
No 154
>KOG1942|consensus
Probab=99.45 E-value=6.3e-12 Score=115.61 Aligned_cols=122 Identities=23% Similarity=0.279 Sum_probs=102.6
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecC-------------cccccccccCCceEEEecCCCHHHHHHHH
Q psy12150 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY-------------VSCIIQPLTSRCSKFRFKPLAENTMLTRL 205 (456)
Q Consensus 139 ~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~-------------~~kl~~~l~~r~~~i~f~~~~~~el~~~l 205 (456)
.++||||++.|.-+++..|.+.++.+- .+++||++|. ++-+.+.+..|...+...+++++++++++
T Consensus 298 GVLFIDEVhMLDiEcFTyL~kalES~i-aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~Ii 376 (456)
T KOG1942|consen 298 GVLFIDEVHMLDIECFTYLHKALESPI-APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQII 376 (456)
T ss_pred cceEeeehhhhhhHHHHHHHHHhcCCC-CceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHHH
Confidence 399999999999999999999998764 4667888874 34567789999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHH---HHhhCCCCCCHHHHHHHhC
Q psy12150 206 QYICEQESVMCDFKALETLVETS-GGDMRRAITCLQSC---ARLKGGEGIVNEDVLEVTG 261 (456)
Q Consensus 206 ~~~~~~~~~~i~~~~l~~L~~~s-~gdlr~~~~~L~~~---~~~~~~~~It~~~v~~~~~ 261 (456)
+.+++.+|+.+++++++.+++.. ..++|.+++.|--+ +...+++.|..+||.++..
T Consensus 377 ~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~ 436 (456)
T KOG1942|consen 377 KIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTE 436 (456)
T ss_pred HHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHH
Confidence 99999999999999999999864 56899999998643 3333677899999877653
No 155
>KOG0737|consensus
Probab=99.45 E-value=6.5e-13 Score=126.34 Aligned_cols=188 Identities=22% Similarity=0.267 Sum_probs=126.2
Q ss_pred CcccccccHHHHHHHHHHHh----------cC---CCC-eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC-
Q psy12150 43 TIDDVIEQQEVVSVLKKCLS----------GA---DLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD- 107 (456)
Q Consensus 43 ~~~~ivg~~~~~~~l~~~l~----------~~---~~~-~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~- 107 (456)
+|+||-|.+.+++.+++.+- .+ +++ ++|+|||||||||.+|++++++.+.. ++.+..+..
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~-----fInv~~s~lt 164 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGAN-----FINVSVSNLT 164 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCC-----cceeeccccc
Confidence 78999999999999887751 12 122 39999999999999999999998664 444444432
Q ss_pred -cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHH-------HHHH-HHHH-------HhccCcceEE
Q psy12150 108 -RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA-------QAAL-RRTM-------EKETKSTRFC 171 (456)
Q Consensus 108 -~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~-------~~~L-l~~l-------e~~~~~~~lI 171 (456)
...++-...+......+ ..-.|+ +|||||+|.+.... .... .++| .+....+.+.
T Consensus 165 ~KWfgE~eKlv~AvFslA-----sKl~P~----iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVl 235 (386)
T KOG0737|consen 165 SKWFGEAQKLVKAVFSLA-----SKLQPS----IIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVL 235 (386)
T ss_pred hhhHHHHHHHHHHHHhhh-----hhcCcc----eeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEE
Confidence 22233333333332222 223455 99999999886321 1111 1111 1222334455
Q ss_pred EEecCcccccccccCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q psy12150 172 LICNYVSCIIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245 (456)
Q Consensus 172 l~~~~~~kl~~~l~~r~-~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~ 245 (456)
.++|.+..+..++.+|. .+++..-|+..+..++|+-+++.+.+. ++-.+..++..+.|.-..-+.++...+.+
T Consensus 236 gATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~Aa~ 309 (386)
T KOG0737|consen 236 GATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRLAAL 309 (386)
T ss_pred eCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHHHhH
Confidence 56678899999988885 589999999999999999999988876 55567889999988655555555454444
No 156
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.45 E-value=2.6e-12 Score=140.05 Aligned_cols=193 Identities=18% Similarity=0.296 Sum_probs=135.4
Q ss_pred ccccccHHHHHHHHHHHhc--------CCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHH
Q psy12150 45 DDVIEQQEVVSVLKKCLSG--------ADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD 115 (456)
Q Consensus 45 ~~ivg~~~~~~~l~~~l~~--------~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~ 115 (456)
+.++||+..+..+.+.+.. .++.. ++|+||+|+|||.+++++++.+.+... .++.+|+++......+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~--~~~~~dmse~~~~~~~~~ 643 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQ--NLITINMSEFQEAHTVSR 643 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCc--ceEEEeHHHhhhhhhhcc
Confidence 3678999999888888742 12222 899999999999999999999875432 566777665322221111
Q ss_pred HHHHHHHhhccCCC--CCCC-----CCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc
Q psy12150 116 KVKTFAQQTASGFN--QDGK-----PCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV 177 (456)
Q Consensus 116 ~l~~~~~~~~~~~~--~~~~-----~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~ 177 (456)
.+ ..++...+ ..|. ...++.||++||++.+.++.++.|++++++.. .++++|+++|-.
T Consensus 644 l~----g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg 719 (852)
T TIGR03345 644 LK----GSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAG 719 (852)
T ss_pred cc----CCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCc
Confidence 10 00000000 0000 00245699999999999999999999998764 578899988721
Q ss_pred -----------c------------------cccccccCCceEEEecCCCHHHHHHHHHHHHHH-------c-C--CCCCH
Q psy12150 178 -----------S------------------CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ-------E-S--VMCDF 218 (456)
Q Consensus 178 -----------~------------------kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~-------~-~--~~i~~ 218 (456)
. .+.++|.+|+.++.|.|++.+++.+++...+.+ . | +.+++
T Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d 799 (852)
T TIGR03345 720 SDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSE 799 (852)
T ss_pred hHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECH
Confidence 0 134667899999999999999999988776543 1 4 36799
Q ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHH
Q psy12150 219 KALETLVETSGG---DMRRAITCLQSCA 243 (456)
Q Consensus 219 ~~l~~L~~~s~g---dlr~~~~~L~~~~ 243 (456)
++++.|++.+.+ +.|.+.+.++...
T Consensus 800 ~a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 800 ALVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 999999998876 7899999987743
No 157
>KOG0743|consensus
Probab=99.44 E-value=3e-12 Score=125.12 Aligned_cols=160 Identities=18% Similarity=0.208 Sum_probs=112.8
Q ss_pred CCCcchh--ccCCCCcccccccHHHHH----HHHHHHhc-------CCCC--eEEEECCCCCcHHHHHHHHHHHhcCCcc
Q psy12150 31 KPVPWVE--KYRPKTIDDVIEQQEVVS----VLKKCLSG-------ADLP--HFLFYGPPGTGKTSTMIAACHQLFGDMY 95 (456)
Q Consensus 31 ~~~~w~e--ky~P~~~~~ivg~~~~~~----~l~~~l~~-------~~~~--~~Ll~G~~G~GKT~~a~~l~~~l~~~~~ 95 (456)
....|.. --.|.+|+.++-.+..++ .|.+++++ |++. .||||||||||||+++.|+|+.+..
T Consensus 185 ~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~y--- 261 (457)
T KOG0743|consen 185 KGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNY--- 261 (457)
T ss_pred cCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCC---
Confidence 3556633 334789999887665554 45555543 3332 3999999999999999999999865
Q ss_pred ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH------------------HHHHHH
Q psy12150 96 RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH------------------AAQAAL 157 (456)
Q Consensus 96 ~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~------------------~~~~~L 157 (456)
++..++.+....-.+++..+... +++.||+|+|+|.-.. -....|
T Consensus 262 --dIydLeLt~v~~n~dLr~LL~~t---------------~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGL 324 (457)
T KOG0743|consen 262 --DIYDLELTEVKLDSDLRHLLLAT---------------PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGL 324 (457)
T ss_pred --ceEEeeeccccCcHHHHHHHHhC---------------CCCcEEEEeecccccccccccccccccccCCcceeehHHh
Confidence 44555555444444454443332 2455999999987521 124578
Q ss_pred HHHHHhccCc----ceEEEEecCcccccccccCCce---EEEecCCCHHHHHHHHHHHHH
Q psy12150 158 RRTMEKETKS----TRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICE 210 (456)
Q Consensus 158 l~~le~~~~~----~~lIl~~~~~~kl~~~l~~r~~---~i~f~~~~~~el~~~l~~~~~ 210 (456)
++.++..... -++||++|...+++|+|.+++. .+++...+.+.+.....+.+.
T Consensus 325 LNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 325 LNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred hhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcC
Confidence 8888765543 4799999999999999999775 788888899888887777654
No 158
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.44 E-value=3.1e-12 Score=132.02 Aligned_cols=215 Identities=15% Similarity=0.140 Sum_probs=141.9
Q ss_pred CCcccccccHHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHH
Q psy12150 42 KTIDDVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119 (456)
Q Consensus 42 ~~~~~ivg~~~~~~~l~~~l~~~--~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~ 119 (456)
.+|++++|....+..+.+.++.- ...+++|+|++||||+.+|+.+++.-.. ...+++.+||..... ..+...+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r--~~~pfv~inC~~l~e-~lleseLFG 285 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGR--RDFPFVAINCGAIAE-SLLEAELFG 285 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCc--CCCCEEEeccccCCh-hHHHHHhcC
Confidence 56889999999888888777532 2235999999999999999999986432 234789999987432 222222211
Q ss_pred HHHhhccCCCCCCCCC----CCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc-c-----
Q psy12150 120 FAQQTASGFNQDGKPC----PPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-S----- 178 (456)
Q Consensus 120 ~~~~~~~~~~~~~~~~----~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~-~----- 178 (456)
....++.+....++++ ++...||+||++.|+...|..|+++|++.. ..+.+|++++.. .
T Consensus 286 ~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~ 365 (526)
T TIGR02329 286 YEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQ 365 (526)
T ss_pred CcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhh
Confidence 1111111110001111 345699999999999999999999998642 234677777643 1
Q ss_pred -cccccccCCc--eEEEecCCCH--HHHHHHHHHHH----HHcCCCCCHHHHHH-------HHHH-cCCCHHHHHHHHHH
Q psy12150 179 -CIIQPLTSRC--SKFRFKPLAE--NTMLTRLQYIC----EQESVMCDFKALET-------LVET-SGGDMRRAITCLQS 241 (456)
Q Consensus 179 -kl~~~l~~r~--~~i~f~~~~~--~el~~~l~~~~----~~~~~~i~~~~l~~-------L~~~-s~gdlr~~~~~L~~ 241 (456)
.+.+.|..|. ..++++|+.+ +++..++...+ ...++.++++++.. |..+ ++||+|++.|.++.
T Consensus 366 g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier 445 (526)
T TIGR02329 366 GRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVER 445 (526)
T ss_pred cchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 2223344444 3677888864 45555544443 34566799999887 6554 59999999999999
Q ss_pred HHHhh---CCCCCCHHHHHHH
Q psy12150 242 CARLK---GGEGIVNEDVLEV 259 (456)
Q Consensus 242 ~~~~~---~~~~It~~~v~~~ 259 (456)
++... .+..|+.+++..+
T Consensus 446 ~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 446 LALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred HHHhcccCCCCccCHHHhhhh
Confidence 88754 2457888887654
No 159
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.44 E-value=4.6e-12 Score=124.12 Aligned_cols=210 Identities=16% Similarity=0.175 Sum_probs=137.1
Q ss_pred cccccccHHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHH
Q psy12150 44 IDDVIEQQEVVSVLKKCLSGAD--LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFA 121 (456)
Q Consensus 44 ~~~ivg~~~~~~~l~~~l~~~~--~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~ 121 (456)
+++++|....++.+.+.+..-. ..+++|+|++||||+++|++++..... ...+++.+||..... ..+...+....
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~~~-~~~~~~lfg~~ 81 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAALNE-NLLDSELFGHE 81 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCCCH-HHHHHHHcccc
Confidence 5679999888877776665322 234999999999999999999975432 234789999987432 22322221111
Q ss_pred HhhccCCCC--CCC-CCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc-------ccc
Q psy12150 122 QQTASGFNQ--DGK-PCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------SCI 180 (456)
Q Consensus 122 ~~~~~~~~~--~~~-~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~-------~kl 180 (456)
...+.+... .+. ..++..+++|||++.|+...|..|++++++.. ..+++|++++.. ..+
T Consensus 82 ~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f 161 (326)
T PRK11608 82 AGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKF 161 (326)
T ss_pred ccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCc
Confidence 000000000 000 01244589999999999999999999997632 236677776542 234
Q ss_pred cccccCCce--EEEecCCCH--HHHHHHHHHH----HHHcC----CCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhhC
Q psy12150 181 IQPLTSRCS--KFRFKPLAE--NTMLTRLQYI----CEQES----VMCDFKALETLVET-SGGDMRRAITCLQSCARLKG 247 (456)
Q Consensus 181 ~~~l~~r~~--~i~f~~~~~--~el~~~l~~~----~~~~~----~~i~~~~l~~L~~~-s~gdlr~~~~~L~~~~~~~~ 247 (456)
.+.|..++. .+.++|+.+ +++..++... +.+.+ ..+++++++.|..+ .+||+|++.+.++.++..+.
T Consensus 162 ~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~~ 241 (326)
T PRK11608 162 RADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 (326)
T ss_pred hHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC
Confidence 455666654 677888764 4555554443 44433 35899999999886 59999999999999887665
Q ss_pred CCCCCHHHH
Q psy12150 248 GEGIVNEDV 256 (456)
Q Consensus 248 ~~~It~~~v 256 (456)
+..++.+++
T Consensus 242 ~~~~~~~~l 250 (326)
T PRK11608 242 TSEYPLDNI 250 (326)
T ss_pred CCCCchhhc
Confidence 556665553
No 160
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.43 E-value=6.4e-12 Score=122.29 Aligned_cols=219 Identities=15% Similarity=0.158 Sum_probs=131.4
Q ss_pred CCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCC----ccccceEE--------------
Q psy12150 40 RPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD----MYRERILE-------------- 101 (456)
Q Consensus 40 ~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~----~~~~~~~e-------------- 101 (456)
.|-.|++++|+++++..+.-.+-.....|+||+|+||+|||++++++++-+..- ...+....
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 82 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTT 82 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCc
Confidence 477899999999999988765543334579999999999999999999987320 00000000
Q ss_pred ----------e--eCCCC--cChHHHHHHHHHHHHhhccCCCCCCCC-CCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-
Q psy12150 102 ----------L--NASDD--RGIQVIRDKVKTFAQQTASGFNQDGKP-CPPFKIVILDEADSMTHAAQAALRRTMEKET- 165 (456)
Q Consensus 102 ----------~--n~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~- 165 (456)
+ +.+.. .|.-++...+. ...+... .|.- .++..++++||++.+++..++.|++.|++..
T Consensus 83 ~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~----~g~~~~~-~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v 157 (334)
T PRK13407 83 MIERPTPVVDLPLGVTEDRVVGALDIERALT----RGEKAFE-PGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGEN 157 (334)
T ss_pred ccccCCccccCCCCCCcceeecchhhhhhhh----cCCeeec-CCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCe
Confidence 0 00000 00001111110 0000000 0000 0344699999999999999999999998643
Q ss_pred ------------CcceEEEEecCc-ccccccccCCce-EEEecCCCH-HHHHHHHHHHHH--------------------
Q psy12150 166 ------------KSTRFCLICNYV-SCIIQPLTSRCS-KFRFKPLAE-NTMLTRLQYICE-------------------- 210 (456)
Q Consensus 166 ------------~~~~lIl~~~~~-~kl~~~l~~r~~-~i~f~~~~~-~el~~~l~~~~~-------------------- 210 (456)
...+++.+.|.. ..+.+++..|+. .+.+.++.. ++..+++.....
T Consensus 158 ~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (334)
T PRK13407 158 VVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLR 237 (334)
T ss_pred EEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCH
Confidence 223333333432 246677888876 666766655 554444443211
Q ss_pred ---------HcCCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhCCC
Q psy12150 211 ---------QESVMCDFKALETLVETS---G-GDMRRAITCLQSCARLK---GGEGIVNEDVLEVTGVI 263 (456)
Q Consensus 211 ---------~~~~~i~~~~l~~L~~~s---~-gdlr~~~~~L~~~~~~~---~~~~It~~~v~~~~~~~ 263 (456)
-..+.++++.++++++.+ + ..+|..+..+..+..++ +...|+.+||+.+....
T Consensus 238 ~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~v 306 (334)
T PRK13407 238 GRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVATMA 306 (334)
T ss_pred HHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHHHh
Confidence 134668888888877653 2 35777666665554444 78899999998877433
No 161
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.43 E-value=4.3e-12 Score=130.90 Aligned_cols=215 Identities=16% Similarity=0.177 Sum_probs=138.5
Q ss_pred CCcccccccHHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHhc------CCccccceEEeeCCCCcChHHH
Q psy12150 42 KTIDDVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLF------GDMYRERILELNASDDRGIQVI 113 (456)
Q Consensus 42 ~~~~~ivg~~~~~~~l~~~l~~~--~~~~~Ll~G~~G~GKT~~a~~l~~~l~------~~~~~~~~~e~n~~~~~~~~~i 113 (456)
.+|++++|....+..+.+.+..- ...+++|+|++||||+.+|+++++.+. ......+++.+||..... ..+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e-~ll 294 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE-SLL 294 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh-hhH
Confidence 36889999998888888777532 223599999999999999999998721 122344799999987432 222
Q ss_pred HHHHHHHHHhhccCCCCCCCC----CCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc-
Q psy12150 114 RDKVKTFAQQTASGFNQDGKP----CPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV- 177 (456)
Q Consensus 114 ~~~l~~~~~~~~~~~~~~~~~----~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~- 177 (456)
...+......++.+....+++ .++..+||+||++.|+...|..|+++|++.. .++++|++++..
T Consensus 295 eseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L 374 (538)
T PRK15424 295 EAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDL 374 (538)
T ss_pred HHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCH
Confidence 222211111111111000111 1345699999999999999999999998632 234677777643
Q ss_pred cc------ccccccCCce--EEEecCCCH--HHHHHHHHHHHH----HcCCCCCHHHH-------HHHHHH-cCCCHHHH
Q psy12150 178 SC------IIQPLTSRCS--KFRFKPLAE--NTMLTRLQYICE----QESVMCDFKAL-------ETLVET-SGGDMRRA 235 (456)
Q Consensus 178 ~k------l~~~l~~r~~--~i~f~~~~~--~el~~~l~~~~~----~~~~~i~~~~l-------~~L~~~-s~gdlr~~ 235 (456)
.. +.+.+..|.. .++++|+.+ +++..++...++ +.+..++++++ +.|..+ ++||+|++
T Consensus 375 ~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL 454 (538)
T PRK15424 375 EEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVREL 454 (538)
T ss_pred HHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHH
Confidence 11 2223444443 677777764 566655555544 35667888776 344433 69999999
Q ss_pred HHHHHHHHHhhCC---CCCCHHHHH
Q psy12150 236 ITCLQSCARLKGG---EGIVNEDVL 257 (456)
Q Consensus 236 ~~~L~~~~~~~~~---~~It~~~v~ 257 (456)
.|.++.++.+..+ ..|+.+++.
T Consensus 455 ~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 455 RNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred HHHHHHHHHhcCCCCcCccCHHHhh
Confidence 9999999887532 467766654
No 162
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.43 E-value=8.6e-13 Score=144.18 Aligned_cols=207 Identities=17% Similarity=0.155 Sum_probs=146.5
Q ss_pred CCCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCcc-----ccceEEeeC
Q psy12150 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY-----RERILELNA 104 (456)
Q Consensus 30 ~~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~-----~~~~~e~n~ 104 (456)
....++.++-+|..++.++|+++.++++.+.+.+...++.+|+||||+|||++++.++..+..+.. ...++.++.
T Consensus 163 ~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l 242 (857)
T PRK10865 163 KYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 242 (857)
T ss_pred HHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEeh
Confidence 445688899999999999999999999999998887778999999999999999999998754221 234555544
Q ss_pred CCC----cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH--------HHHHHHHHHHhccCcceEEE
Q psy12150 105 SDD----RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--------AQAALRRTMEKETKSTRFCL 172 (456)
Q Consensus 105 ~~~----~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~--------~~~~Ll~~le~~~~~~~lIl 172 (456)
... ...+...+.+.......... + ...|+||||+|.+.+. ..+.|..++++. ...+|.
T Consensus 243 ~~l~ag~~~~g~~e~~lk~~~~~~~~~----~----~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g--~l~~Ig 312 (857)
T PRK10865 243 GALVAGAKYRGEFEERLKGVLNDLAKQ----E----GNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--ELHCVG 312 (857)
T ss_pred hhhhhccchhhhhHHHHHHHHHHHHHc----C----CCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC--CCeEEE
Confidence 431 11223333343333221110 1 2239999999999642 466677777653 466666
Q ss_pred EecCc-----ccccccccCCceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHH
Q psy12150 173 ICNYV-----SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ----ESVMCDFKALETLVETSGG------DMRRAIT 237 (456)
Q Consensus 173 ~~~~~-----~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~----~~~~i~~~~l~~L~~~s~g------dlr~~~~ 237 (456)
+++.. ....+++.+|++.+.+..|+.++...+++....+ .++.++++++...+..+++ -+..++.
T Consensus 313 aTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~ 392 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAID 392 (857)
T ss_pred cCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHH
Confidence 66543 2467899999999999999999999988776644 3578889998887776643 4556777
Q ss_pred HHHHHHHhh
Q psy12150 238 CLQSCARLK 246 (456)
Q Consensus 238 ~L~~~~~~~ 246 (456)
.++.++...
T Consensus 393 LiD~aaa~~ 401 (857)
T PRK10865 393 LIDEAASSI 401 (857)
T ss_pred HHHHHhccc
Confidence 777766543
No 163
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.43 E-value=2.9e-12 Score=140.14 Aligned_cols=201 Identities=14% Similarity=0.133 Sum_probs=143.6
Q ss_pred chhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCcc-----ccceEEeeCCCC--
Q psy12150 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY-----RERILELNASDD-- 107 (456)
Q Consensus 35 w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~-----~~~~~e~n~~~~-- 107 (456)
+.++-+...++.++|++..++.+.+++.....++++|+||||||||++++.++..+..... ...+++++....
T Consensus 169 l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~a 248 (821)
T CHL00095 169 LTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLA 248 (821)
T ss_pred HHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhc
Confidence 3344456789999999999999999998888778999999999999999999998753221 235667765431
Q ss_pred --cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH--------HHHHHHHHHHhccCcceEEEEecCc
Q psy12150 108 --RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--------AQAALRRTMEKETKSTRFCLICNYV 177 (456)
Q Consensus 108 --~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~--------~~~~Ll~~le~~~~~~~lIl~~~~~ 177 (456)
...++..+.+.......... ...|+||||+|.+... ..+.|..++.+. .+.+|.+++..
T Consensus 249 g~~~~ge~e~rl~~i~~~~~~~---------~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~~ 317 (821)
T CHL00095 249 GTKYRGEFEERLKRIFDEIQEN---------NNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTLD 317 (821)
T ss_pred cCCCccHHHHHHHHHHHHHHhc---------CCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCHH
Confidence 11233444444444332111 2239999999987542 345566677653 35666666532
Q ss_pred -----ccccccccCCceEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCC------CHHHHHHHHHHH
Q psy12150 178 -----SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE----QESVMCDFKALETLVETSGG------DMRRAITCLQSC 242 (456)
Q Consensus 178 -----~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~----~~~~~i~~~~l~~L~~~s~g------dlr~~~~~L~~~ 242 (456)
....+++.+|+..+.+..++.++...+++.... ..++.++++++..++..+++ -++.++..|+.+
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a 397 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEA 397 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHH
Confidence 235688999999999999999998888776543 24667999999999998875 267899999887
Q ss_pred HHhh
Q psy12150 243 ARLK 246 (456)
Q Consensus 243 ~~~~ 246 (456)
+...
T Consensus 398 ~a~~ 401 (821)
T CHL00095 398 GSRV 401 (821)
T ss_pred HHHH
Confidence 7644
No 164
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.42 E-value=6.4e-12 Score=133.61 Aligned_cols=208 Identities=17% Similarity=0.178 Sum_probs=138.3
Q ss_pred cchhccCCCCcccccccHHHHHHHHHHHh-----------cCCCC-eEEEECCCCCcHHHHHHHHHHHhcCCccccceEE
Q psy12150 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLS-----------GADLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILE 101 (456)
Q Consensus 34 ~w~eky~P~~~~~ivg~~~~~~~l~~~l~-----------~~~~~-~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e 101 (456)
.|.......+|+++.|.+.....+.+.+. ++..+ +++|+||||+|||++++++++++.. +++.
T Consensus 141 ~~~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~-----~f~~ 215 (644)
T PRK10733 141 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-----PFFT 215 (644)
T ss_pred ccCchhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC-----CEEE
Confidence 34444556679999998888777665542 12223 4999999999999999999998743 4566
Q ss_pred eeCCCCc------ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH--------------HHHHHHHHH
Q psy12150 102 LNASDDR------GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--------------AQAALRRTM 161 (456)
Q Consensus 102 ~n~~~~~------~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~--------------~~~~Ll~~l 161 (456)
+++++.. +...++..+.... . ..|+ +|||||+|.+... ..+.|+..|
T Consensus 216 is~~~~~~~~~g~~~~~~~~~f~~a~----~-----~~P~----IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~m 282 (644)
T PRK10733 216 ISGSDFVEMFVGVGASRVRDMFEQAK----K-----AAPC----IIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEM 282 (644)
T ss_pred EehHHhHHhhhcccHHHHHHHHHHHH----h-----cCCc----EEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhh
Confidence 6665421 1122333222211 1 1233 9999999998431 233444444
Q ss_pred Hhc--cCcceEEEEecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CH
Q psy12150 162 EKE--TKSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG----DM 232 (456)
Q Consensus 162 e~~--~~~~~lIl~~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g----dl 232 (456)
+.. ...+++|.++|.+..+.+++.+ |+. .+.|+.|+.++..++++..+++.... .+..+..+++.+.| |+
T Consensus 283 dg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G~sgadl 361 (644)
T PRK10733 283 DGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADL 361 (644)
T ss_pred hcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCCCCHHHH
Confidence 433 2356788888999999999885 554 88999999999999999888764332 12235668888877 66
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHh
Q psy12150 233 RRAITCLQSCARLKGGEGIVNEDVLEVT 260 (456)
Q Consensus 233 r~~~~~L~~~~~~~~~~~It~~~v~~~~ 260 (456)
..++++....+...+...|+.+++..+.
T Consensus 362 ~~l~~eAa~~a~r~~~~~i~~~d~~~a~ 389 (644)
T PRK10733 362 ANLVNEAALFAARGNKRVVSMVEFEKAK 389 (644)
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 6666666554443356789999988765
No 165
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=7.2e-12 Score=130.26 Aligned_cols=210 Identities=20% Similarity=0.243 Sum_probs=144.9
Q ss_pred CCcccccccHHHHHHHHHHHh------------cCCCC-eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCc
Q psy12150 42 KTIDDVIEQQEVVSVLKKCLS------------GADLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (456)
Q Consensus 42 ~~~~~ivg~~~~~~~l~~~l~------------~~~~~-~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~ 108 (456)
.+|.++.|.+.....+++.+. +-+.+ .+|||||||||||.+++++++... .+++.+..++..
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~-----~~fi~v~~~~l~ 313 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR-----SRFISVKGSELL 313 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC-----CeEEEeeCHHHh
Confidence 478888888888877776652 12233 399999999999999999999753 366776666432
Q ss_pred C--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH-----------HHHHHHHHHHH--hccCcceEEEE
Q psy12150 109 G--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTME--KETKSTRFCLI 173 (456)
Q Consensus 109 ~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~-----------~~~~~Ll~~le--~~~~~~~lIl~ 173 (456)
+ ..+....+......+.. ..|| +||+||+|.+.. .....|+..++ +....+++|.+
T Consensus 314 sk~vGesek~ir~~F~~A~~-----~~p~----iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~a 384 (494)
T COG0464 314 SKWVGESEKNIRELFEKARK-----LAPS----IIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAA 384 (494)
T ss_pred ccccchHHHHHHHHHHHHHc-----CCCc----EEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEec
Confidence 2 34444455544444332 2344 999999999853 23445565554 33445667888
Q ss_pred ecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhh--
Q psy12150 174 CNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVM-CDFKALETLVETSGG-DMRRAITCLQSCARLK-- 246 (456)
Q Consensus 174 ~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~-i~~~~l~~L~~~s~g-dlr~~~~~L~~~~~~~-- 246 (456)
+|.++.+.+++.+ |+. .+.|++|+..+..++++..+...+.. ..+-.++.+++.+.| .-..+...++.++..+
T Consensus 385 TN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~ 464 (494)
T COG0464 385 TNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALR 464 (494)
T ss_pred CCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 8899999999988 766 89999999999999999998866654 345667778876655 3344455555554443
Q ss_pred -C-CCCCCHHHHHHHhCCCCH
Q psy12150 247 -G-GEGIVNEDVLEVTGVIPK 265 (456)
Q Consensus 247 -~-~~~It~~~v~~~~~~~~~ 265 (456)
. ...||.+|+.++.....+
T Consensus 465 ~~~~~~~~~~~~~~a~~~~~p 485 (494)
T COG0464 465 EARRREVTLDDFLDALKKIKP 485 (494)
T ss_pred HhccCCccHHHHHHHHHhcCC
Confidence 2 457899998888776543
No 166
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.41 E-value=5.7e-12 Score=131.04 Aligned_cols=213 Identities=16% Similarity=0.163 Sum_probs=142.0
Q ss_pred CCCCcccccccHHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHH
Q psy12150 40 RPKTIDDVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKV 117 (456)
Q Consensus 40 ~P~~~~~ivg~~~~~~~l~~~l~~~--~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l 117 (456)
...+|++++|....++.+.+.++.- ...+++|+|++||||+++|++++..... ...+++.+||..... ..+...+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r--~~~pfv~inca~~~~-~~~e~el 275 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPR--GKKPFLALNCASIPD-DVVESEL 275 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCC--CCCCeEEeccccCCH-HHHHHHh
Confidence 3458999999988777776665421 2234999999999999999999876432 223788999987432 2222111
Q ss_pred HHHHHhhccCCCCCCCC----CCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc-----
Q psy12150 118 KTFAQQTASGFNQDGKP----CPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV----- 177 (456)
Q Consensus 118 ~~~~~~~~~~~~~~~~~----~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~----- 177 (456)
.......+.+ ...+++ .++..+|+|||++.|+...|..|++++++.. ..+.+|++++..
T Consensus 276 FG~~~~~~~~-~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~ 354 (520)
T PRK10820 276 FGHAPGAYPN-ALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELV 354 (520)
T ss_pred cCCCCCCcCC-cccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHH
Confidence 1100000000 000110 1244589999999999999999999998632 235677776542
Q ss_pred --ccccccccCCce--EEEecCCCH--HHHHHH----HHHHHHHcCC---CCCHHHHHHHHHH-cCCCHHHHHHHHHHHH
Q psy12150 178 --SCIIQPLTSRCS--KFRFKPLAE--NTMLTR----LQYICEQESV---MCDFKALETLVET-SGGDMRRAITCLQSCA 243 (456)
Q Consensus 178 --~kl~~~l~~r~~--~i~f~~~~~--~el~~~----l~~~~~~~~~---~i~~~~l~~L~~~-s~gdlr~~~~~L~~~~ 243 (456)
..+.+.|..|.. .++++|+.+ +++..+ +...+.+.|. .+++++++.|..+ ++||+|++.|.++.++
T Consensus 355 ~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~ 434 (520)
T PRK10820 355 QKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRAL 434 (520)
T ss_pred HcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 123344556643 677777765 345443 4444555543 6899999999988 7999999999999998
Q ss_pred HhhCCCCCCHHHH
Q psy12150 244 RLKGGEGIVNEDV 256 (456)
Q Consensus 244 ~~~~~~~It~~~v 256 (456)
..+.+..|+.+++
T Consensus 435 ~~~~~~~i~~~~~ 447 (520)
T PRK10820 435 TQLEGYELRPQDI 447 (520)
T ss_pred HhCCCCcccHHHc
Confidence 8777778998886
No 167
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.41 E-value=4.8e-12 Score=135.48 Aligned_cols=187 Identities=18% Similarity=0.228 Sum_probs=125.7
Q ss_pred cccccHHHHHHHHHHHhc--------CCC-CeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHH
Q psy12150 46 DVIEQQEVVSVLKKCLSG--------ADL-PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK 116 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~~--------~~~-~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~ 116 (456)
.++||+++++.+.+++.. +++ .+++|+||||||||++|+.+++.+.. +++.+|++.......+...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~id~se~~~~~~~~~L 533 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERHTVSRL 533 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----CcEEeechhhcccccHHHH
Confidence 478999999999888763 222 23999999999999999999998843 5667777654332222111
Q ss_pred HHHHHHhhccCCC--CCCC-----CCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc-
Q psy12150 117 VKTFAQQTASGFN--QDGK-----PCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV- 177 (456)
Q Consensus 117 l~~~~~~~~~~~~--~~~~-----~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~- 177 (456)
+. .+....+ ..+. ...++.||++||++.+.++.++.|+++|++.. .++++|+++|.-
T Consensus 534 iG----~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~ 609 (758)
T PRK11034 534 IG----APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGV 609 (758)
T ss_pred cC----CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCH
Confidence 11 0000000 0000 00245699999999999999999999998642 367788888721
Q ss_pred ------------------------ccccccccCCce-EEEecCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHHH
Q psy12150 178 ------------------------SCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICE-------QES--VMCDFKALET 223 (456)
Q Consensus 178 ------------------------~kl~~~l~~r~~-~i~f~~~~~~el~~~l~~~~~-------~~~--~~i~~~~l~~ 223 (456)
..+.|.+.+|+. ++.|.+++.+++..++...+. ..| +.+++++++.
T Consensus 610 ~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~ 689 (758)
T PRK11034 610 RETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDW 689 (758)
T ss_pred HHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHH
Confidence 113466778886 899999999999988876554 234 3568999999
Q ss_pred HHHHcC---CCHHHHHHHHHH
Q psy12150 224 LVETSG---GDMRRAITCLQS 241 (456)
Q Consensus 224 L~~~s~---gdlr~~~~~L~~ 241 (456)
|++..- ...|-+.+.+++
T Consensus 690 l~~~~~~~~~GAR~l~r~i~~ 710 (758)
T PRK11034 690 LAEKGYDRAMGARPMARVIQD 710 (758)
T ss_pred HHHhCCCCCCCCchHHHHHHH
Confidence 997641 234555555544
No 168
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.41 E-value=5.7e-12 Score=134.93 Aligned_cols=212 Identities=15% Similarity=0.098 Sum_probs=141.8
Q ss_pred CCcccccccHHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHH
Q psy12150 42 KTIDDVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119 (456)
Q Consensus 42 ~~~~~ivg~~~~~~~l~~~l~~~--~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~ 119 (456)
.+|++++|....+..+.+.++.. ...+++|+|++||||+++|+++++.... ...+++.+||..... +.+...+
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r--~~~pfv~vnc~~~~~-~~~~~el-- 396 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESER--AAGPYIAVNCQLYPD-EALAEEF-- 396 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCc--cCCCeEEEECCCCCh-HHHHHHh--
Confidence 37999999988877766665432 2234999999999999999999987543 233789999987432 2222211
Q ss_pred HHHhhccCCCCCCCC----CCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc-------
Q psy12150 120 FAQQTASGFNQDGKP----CPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV------- 177 (456)
Q Consensus 120 ~~~~~~~~~~~~~~~----~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~------- 177 (456)
.... .+....+.+ .++..+|||||++.|+...|..|++++++.. ..+.+|++++..
T Consensus 397 -fg~~-~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~ 474 (638)
T PRK11388 397 -LGSD-RTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQ 474 (638)
T ss_pred -cCCC-CcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhc
Confidence 1100 000001111 1344599999999999999999999998642 135677776642
Q ss_pred ccccccccCCce--EEEecCCCH--HHHHHHHHHHHH----HcC--CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhh
Q psy12150 178 SCIIQPLTSRCS--KFRFKPLAE--NTMLTRLQYICE----QES--VMCDFKALETLVETS-GGDMRRAITCLQSCARLK 246 (456)
Q Consensus 178 ~kl~~~l~~r~~--~i~f~~~~~--~el~~~l~~~~~----~~~--~~i~~~~l~~L~~~s-~gdlr~~~~~L~~~~~~~ 246 (456)
..+.+.|..|.. .+.++|+.+ +++..++...+. +.+ +.+++++++.|..+. +||+|++.+.++.++..+
T Consensus 475 ~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 475 NRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSS 554 (638)
T ss_pred CCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhC
Confidence 123333444443 567777765 355555554443 222 468999999999886 999999999999988766
Q ss_pred CCCCCCHHHHHHHh
Q psy12150 247 GGEGIVNEDVLEVT 260 (456)
Q Consensus 247 ~~~~It~~~v~~~~ 260 (456)
.+..|+.+++...+
T Consensus 555 ~~~~i~~~~lp~~~ 568 (638)
T PRK11388 555 DNGRIRLSDLPEHL 568 (638)
T ss_pred CCCeecHHHCchhh
Confidence 67789888876543
No 169
>KOG1514|consensus
Probab=99.40 E-value=5.3e-11 Score=121.48 Aligned_cols=217 Identities=19% Similarity=0.223 Sum_probs=151.1
Q ss_pred ccccHHHHHHHHHHHhcCCC----C-eEEEECCCCCcHHHHHHHHHHHhc-----CCccccceEEeeCCCCcChHHHHHH
Q psy12150 47 VIEQQEVVSVLKKCLSGADL----P-HFLFYGPPGTGKTSTMIAACHQLF-----GDMYRERILELNASDDRGIQVIRDK 116 (456)
Q Consensus 47 ivg~~~~~~~l~~~l~~~~~----~-~~Ll~G~~G~GKT~~a~~l~~~l~-----~~~~~~~~~e~n~~~~~~~~~i~~~ 116 (456)
+.+++.....|..+++..-. . -++++|.||||||.+++.+.+.+. ++...+.++++|+-...+...+...
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~ 477 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEK 477 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHH
Confidence 34566666666666543222 2 399999999999999999998775 2445678999999988887777666
Q ss_pred HHHHHHh-----------hccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc---CcceEEEEecCc---cc
Q psy12150 117 VKTFAQQ-----------TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET---KSTRFCLICNYV---SC 179 (456)
Q Consensus 117 l~~~~~~-----------~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~---~~~~lIl~~~~~---~k 179 (456)
+-..... ..+.+. ..+++....||+|||.|.|....|+.|.++++.+. ..+++|.++|.. .+
T Consensus 478 I~~~lsg~~~~~~~al~~L~~~f~-~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr 556 (767)
T KOG1514|consen 478 IWEALSGERVTWDAALEALNFRFT-VPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPER 556 (767)
T ss_pred HHHhcccCcccHHHHHHHHHHhhc-cCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHH
Confidence 5432110 001111 22333455699999999999888988888887654 345666666642 33
Q ss_pred -ccccccCCc--eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHHhhCCC----
Q psy12150 180 -IIQPLTSRC--SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVET---SGGDMRRAITCLQSCARLKGGE---- 249 (456)
Q Consensus 180 -l~~~l~~r~--~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~---s~gdlr~~~~~L~~~~~~~~~~---- 249 (456)
+...+.+|. .++.|.|++.+++..++..+++.. ..|..++++.+++. ..||.|+++..+..++..+...
T Consensus 557 ~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~ 635 (767)
T KOG1514|consen 557 LLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKG 635 (767)
T ss_pred HhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccc
Confidence 334566664 499999999999999999888754 46788999888875 4799999999999998887422
Q ss_pred ------CCCHHHHHHHhCCCCH
Q psy12150 250 ------GIVNEDVLEVTGVIPK 265 (456)
Q Consensus 250 ------~It~~~v~~~~~~~~~ 265 (456)
.|+.-+|.+++.....
T Consensus 636 k~~~~q~v~~~~v~~Ai~em~~ 657 (767)
T KOG1514|consen 636 KLAVSQLVGILHVMEAINEMLA 657 (767)
T ss_pred cccccceeehHHHHHHHHHHhh
Confidence 2455555555544433
No 170
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.39 E-value=1.3e-11 Score=135.20 Aligned_cols=191 Identities=19% Similarity=0.267 Sum_probs=128.9
Q ss_pred ccccccHHHHHHHHHHHhcC--------CCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHH
Q psy12150 45 DDVIEQQEVVSVLKKCLSGA--------DLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD 115 (456)
Q Consensus 45 ~~ivg~~~~~~~l~~~l~~~--------~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~ 115 (456)
+.++||+++++.+.+.+... ++.+ ++|+||+|+|||++|+++++.+.+... .++.++.+.......+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~--~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSED--AMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCcc--ceEEEEchhccccccHHH
Confidence 46789999999998887532 2223 899999999999999999999876432 567777765433222211
Q ss_pred HHHHHHHhhccCCC--CCCC-----CCCCcEEEEEcCCCCccHHHHHHHHHHHHhc-----------cCcceEEEEecCc
Q psy12150 116 KVKTFAQQTASGFN--QDGK-----PCPPFKIVILDEADSMTHAAQAALRRTMEKE-----------TKSTRFCLICNYV 177 (456)
Q Consensus 116 ~l~~~~~~~~~~~~--~~~~-----~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~-----------~~~~~lIl~~~~~ 177 (456)
.+. .+....+ ..+. ...+++||++||++.+.++.++.|++.++++ ..+++||+++|..
T Consensus 587 l~g----~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g 662 (821)
T CHL00095 587 LIG----SPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLG 662 (821)
T ss_pred hcC----CCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcc
Confidence 110 0000000 0000 0025679999999999999999999999874 2568888887731
Q ss_pred cc-------------------------------------ccccccCCc-eEEEecCCCHHHHHHHHHHHHHH-------c
Q psy12150 178 SC-------------------------------------IIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQ-------E 212 (456)
Q Consensus 178 ~k-------------------------------------l~~~l~~r~-~~i~f~~~~~~el~~~l~~~~~~-------~ 212 (456)
.. +.|.+.+|+ .++.|.|++.+++.+++...+.+ .
T Consensus 663 ~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~ 742 (821)
T CHL00095 663 SKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQ 742 (821)
T ss_pred hHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 10 124567888 68999999999999988776653 2
Q ss_pred C--CCCCHHHHHHHHHHc---CCCHHHHHHHHHH
Q psy12150 213 S--VMCDFKALETLVETS---GGDMRRAITCLQS 241 (456)
Q Consensus 213 ~--~~i~~~~l~~L~~~s---~gdlr~~~~~L~~ 241 (456)
| +.+++++.+.|++.. ..-.|-+.+.+++
T Consensus 743 ~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~ 776 (821)
T CHL00095 743 GIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMR 776 (821)
T ss_pred CcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHH
Confidence 3 467899999999863 1234555555544
No 171
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.37 E-value=6.8e-12 Score=140.11 Aligned_cols=128 Identities=9% Similarity=0.104 Sum_probs=89.1
Q ss_pred CCCCCcEEEEEcCCCCccHH-----HHHHHHHHHHhc-----cCcceEEEEecCcccccccccC--Cce-EEEecCCCHH
Q psy12150 133 KPCPPFKIVILDEADSMTHA-----AQAALRRTMEKE-----TKSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAEN 199 (456)
Q Consensus 133 ~~~~~~~iviIDE~d~l~~~-----~~~~Ll~~le~~-----~~~~~lIl~~~~~~kl~~~l~~--r~~-~i~f~~~~~~ 199 (456)
.|| ||+|||+|.+... ....|+..|... ...+++|.+||.+..++++|.+ |+. .|.++.|+..
T Consensus 1732 SPC----IIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p 1807 (2281)
T CHL00206 1732 SPC----IIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIP 1807 (2281)
T ss_pred CCe----EEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCch
Confidence 466 9999999999754 245666777532 3456777888889999999987 444 7888888887
Q ss_pred HHHHHHHHHHHHcCCCCCHH--HHHHHHHHcCC-CHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhCCCC
Q psy12150 200 TMLTRLQYICEQESVMCDFK--ALETLVETSGG-DMRRAITCLQSCARLK---GGEGIVNEDVLEVTGVIP 264 (456)
Q Consensus 200 el~~~l~~~~~~~~~~i~~~--~l~~L~~~s~g-dlr~~~~~L~~~~~~~---~~~~It~~~v~~~~~~~~ 264 (456)
+..+.+.......|+.+.++ .++.+++.+.| ..+.+.+.+..++..+ +...|+.++++.++.+..
T Consensus 1808 ~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1808 QQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQT 1878 (2281)
T ss_pred hHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 77777765555456666543 47889999876 3444444444454444 567899999988876543
No 172
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.37 E-value=1.8e-11 Score=132.56 Aligned_cols=180 Identities=18% Similarity=0.236 Sum_probs=126.4
Q ss_pred cccccHHHHHHHHHHHhcC--------CCC-eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHH
Q psy12150 46 DVIEQQEVVSVLKKCLSGA--------DLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK 116 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~~~--------~~~-~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~ 116 (456)
.++||+++++.+.+.+... ++. +++|+||+|||||++|+++++.+.. .++.++++.......+...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~-----~~~~~d~se~~~~~~~~~l 529 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV-----HLERFDMSEYMEKHTVSRL 529 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC-----CeEEEeCchhhhcccHHHH
Confidence 5789999999988887632 233 3999999999999999999998843 4566666543221111111
Q ss_pred ---------------HHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhc-----------cCcceE
Q psy12150 117 ---------------VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE-----------TKSTRF 170 (456)
Q Consensus 117 ---------------l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~-----------~~~~~l 170 (456)
+...... .++.||++||++.+.++.++.|++++++. -.++++
T Consensus 530 ig~~~gyvg~~~~~~l~~~~~~------------~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ii 597 (731)
T TIGR02639 530 IGAPPGYVGFEQGGLLTEAVRK------------HPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVIL 597 (731)
T ss_pred hcCCCCCcccchhhHHHHHHHh------------CCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEE
Confidence 1111111 24569999999999999999999999864 135778
Q ss_pred EEEecCcc-------------------------cccccccCCce-EEEecCCCHHHHHHHHHHHHHH-------cC--CC
Q psy12150 171 CLICNYVS-------------------------CIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQ-------ES--VM 215 (456)
Q Consensus 171 Il~~~~~~-------------------------kl~~~l~~r~~-~i~f~~~~~~el~~~l~~~~~~-------~~--~~ 215 (456)
|+++|... .+.+.+.+|+. ++.|.|++.+++.+++...+++ .| +.
T Consensus 598 i~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~ 677 (731)
T TIGR02639 598 IMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLE 677 (731)
T ss_pred EECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 88876321 13456778875 8999999999999998877653 22 56
Q ss_pred CCHHHHHHHHHHc---CCCHHHHHHHHHHH
Q psy12150 216 CDFKALETLVETS---GGDMRRAITCLQSC 242 (456)
Q Consensus 216 i~~~~l~~L~~~s---~gdlr~~~~~L~~~ 242 (456)
+++++++.|++.. ....|.+.+.+++.
T Consensus 678 i~~~a~~~La~~~~~~~~GaR~l~r~i~~~ 707 (731)
T TIGR02639 678 LTDDAKKYLAEKGYDEEFGARPLARVIQEE 707 (731)
T ss_pred eCHHHHHHHHHhCCCcccCchHHHHHHHHH
Confidence 7999999999864 23456666666543
No 173
>KOG0728|consensus
Probab=99.37 E-value=1.7e-11 Score=110.39 Aligned_cols=212 Identities=20% Similarity=0.226 Sum_probs=130.4
Q ss_pred hhccCCCCcccccccHHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEe
Q psy12150 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSG-------------ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILEL 102 (456)
Q Consensus 36 ~eky~P~~~~~ivg~~~~~~~l~~~l~~-------------~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~ 102 (456)
++|---.+++-+-|.+..+.++++.++- ..+..+|+|||||+|||.++++++....+ .++.+
T Consensus 138 VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c-----~firv 212 (404)
T KOG0728|consen 138 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC-----TFIRV 212 (404)
T ss_pred hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcce-----EEEEe
Confidence 4443333444444578888888887741 12334999999999999999999987533 56666
Q ss_pred eCCCCc--ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH-----------HHHHHHHHHHHh-----c
Q psy12150 103 NASDDR--GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEK-----E 164 (456)
Q Consensus 103 n~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~-----------~~~~~Ll~~le~-----~ 164 (456)
+++... -.++=...+++++-.+.. ..|+ +||+||+|.+.. +.|...++.++. .
T Consensus 213 sgselvqk~igegsrmvrelfvmare-----haps----iifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 213 SGSELVQKYIGEGSRMVRELFVMARE-----HAPS----IIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred chHHHHHHHhhhhHHHHHHHHHHHHh-----cCCc----eEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 655410 000001122222222211 1222 999999999843 345555555543 3
Q ss_pred cCcceEEEEecCcccccccccCCce---EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Q psy12150 165 TKSTRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITCLQ 240 (456)
Q Consensus 165 ~~~~~lIl~~~~~~kl~~~l~~r~~---~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g-dlr~~~~~L~ 240 (456)
..+..+|+++|...-+.+++.+.+. .++|+||+++...++|+-..++.+.. .--.+..+++.-+| +-..+...|-
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~-rgi~l~kiaekm~gasgaevk~vct 362 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT-RGINLRKIAEKMPGASGAEVKGVCT 362 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-cccCHHHHHHhCCCCccchhhhhhh
Confidence 4567899999998888899887765 79999999999999998777654321 01124445554433 2233344444
Q ss_pred HHHHhh---CCCCCCHHHHHHHhCC
Q psy12150 241 SCARLK---GGEGIVNEDVLEVTGV 262 (456)
Q Consensus 241 ~~~~~~---~~~~It~~~v~~~~~~ 262 (456)
.+..|+ ..-.+|.+|++-+++.
T Consensus 363 eagm~alrerrvhvtqedfemav~k 387 (404)
T KOG0728|consen 363 EAGMYALRERRVHVTQEDFEMAVAK 387 (404)
T ss_pred hhhHHHHHHhhccccHHHHHHHHHH
Confidence 455555 2446888888766653
No 174
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.37 E-value=2.4e-11 Score=132.85 Aligned_cols=194 Identities=20% Similarity=0.261 Sum_probs=130.0
Q ss_pred cccccccHHHHHHHHHHHhcC--------CC-CeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHH
Q psy12150 44 IDDVIEQQEVVSVLKKCLSGA--------DL-PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIR 114 (456)
Q Consensus 44 ~~~ivg~~~~~~~l~~~l~~~--------~~-~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~ 114 (456)
.+.++|++.++..+...+... ++ ..++|+||+|+|||++|+++++.+.+... .++.++++.........
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~--~~i~id~se~~~~~~~~ 644 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDD--AMVRIDMSEFMEKHSVS 644 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCC--cEEEEEhHHhhhhhhHH
Confidence 457899999999988887632 12 23999999999999999999998865322 46777776532211111
Q ss_pred HHHHHHHHhhccCCCCC-CC------CCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecC
Q psy12150 115 DKVKTFAQQTASGFNQD-GK------PCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNY 176 (456)
Q Consensus 115 ~~l~~~~~~~~~~~~~~-~~------~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~ 176 (456)
..+ ..+....+.. +. ...++.+|++||++.+.+..++.|++++++.. .++++|+++|.
T Consensus 645 ~Li----G~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~ 720 (857)
T PRK10865 645 RLV----GAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred HHh----CCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCc
Confidence 111 0000000000 00 00134599999999999999999999998642 34668888874
Q ss_pred c-------------------------ccccccccCCc-eEEEecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHH
Q psy12150 177 V-------------------------SCIIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQ-------ES--VMCDFKAL 221 (456)
Q Consensus 177 ~-------------------------~kl~~~l~~r~-~~i~f~~~~~~el~~~l~~~~~~-------~~--~~i~~~~l 221 (456)
. ..+.+.|.+|+ ..+.|.|++.+++..++...+.+ .+ +.++++++
T Consensus 721 g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al 800 (857)
T PRK10865 721 GSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEAL 800 (857)
T ss_pred chHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHH
Confidence 1 11345678888 68999999999999888766643 23 45799999
Q ss_pred HHHHHHcC---CCHHHHHHHHHHHH
Q psy12150 222 ETLVETSG---GDMRRAITCLQSCA 243 (456)
Q Consensus 222 ~~L~~~s~---gdlr~~~~~L~~~~ 243 (456)
+.|++..- -..|.+.+.+++.+
T Consensus 801 ~~L~~~gy~~~~GARpL~r~I~~~i 825 (857)
T PRK10865 801 KLLSENGYDPVYGARPLKRAIQQQI 825 (857)
T ss_pred HHHHHcCCCccCChHHHHHHHHHHH
Confidence 99998642 24666666666543
No 175
>KOG0652|consensus
Probab=99.37 E-value=1.1e-11 Score=112.34 Aligned_cols=200 Identities=21% Similarity=0.293 Sum_probs=123.2
Q ss_pred CcccccccHHHHHHHHHHHh------------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcccc---ceEEeeCCC
Q psy12150 43 TIDDVIEQQEVVSVLKKCLS------------GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRE---RILELNASD 106 (456)
Q Consensus 43 ~~~~ivg~~~~~~~l~~~l~------------~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~---~~~e~n~~~ 106 (456)
+++++-|.+..+++|.+++- +-++|. +|+|||||+|||.++++++.+.+..+... ..+.+--
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfI-- 246 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFI-- 246 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhh--
Confidence 67899999999999887762 223343 99999999999999999998765422110 1111111
Q ss_pred CcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH-----------HHHHHHHHHHHh-----ccCcceE
Q psy12150 107 DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEK-----ETKSTRF 170 (456)
Q Consensus 107 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~-----------~~~~~Ll~~le~-----~~~~~~l 170 (456)
..+... +++....+ ....|+ +|||||+|.+.. +.|...++.+.. +...+.+
T Consensus 247 GdGAkL----VRDAFaLA-----KEkaP~----IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKv 313 (424)
T KOG0652|consen 247 GDGAKL----VRDAFALA-----KEKAPT----IIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKV 313 (424)
T ss_pred cchHHH----HHHHHHHh-----hccCCe----EEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEE
Confidence 111222 22222221 222333 999999998843 245555555543 2345668
Q ss_pred EEEecCcccccccccCCce---EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHH---HH
Q psy12150 171 CLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGD-MRRAITCLQS---CA 243 (456)
Q Consensus 171 Il~~~~~~kl~~~l~~r~~---~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gd-lr~~~~~L~~---~~ 243 (456)
|.++|...-+.|++.+.+. .++|+-|+++...++++-+.++.++. ++--.+.|++.+.+. -.++...+-. ++
T Consensus 314 iAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeELaRsTddFNGAQcKAVcVEAGMiA 392 (424)
T KOG0652|consen 314 IAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEELARSTDDFNGAQCKAVCVEAGMIA 392 (424)
T ss_pred EeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHHhhcccccCchhheeeehhhhHHH
Confidence 8888888888898876665 79999999999999998887765543 333467788877542 2222222222 22
Q ss_pred HhhCCCCCCHHHHHH
Q psy12150 244 RLKGGEGIVNEDVLE 258 (456)
Q Consensus 244 ~~~~~~~It~~~v~~ 258 (456)
...+...|+.+|..+
T Consensus 393 LRr~atev~heDfme 407 (424)
T KOG0652|consen 393 LRRGATEVTHEDFME 407 (424)
T ss_pred HhcccccccHHHHHH
Confidence 222445666666544
No 176
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.37 E-value=2.3e-11 Score=133.54 Aligned_cols=194 Identities=19% Similarity=0.266 Sum_probs=135.0
Q ss_pred ccccccHHHHHHHHHHHhcC--------CCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHH
Q psy12150 45 DDVIEQQEVVSVLKKCLSGA--------DLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD 115 (456)
Q Consensus 45 ~~ivg~~~~~~~l~~~l~~~--------~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~ 115 (456)
+.++||+.+++.+...+... ++.+ ++|+||+|+|||++|+++++.+.+... .++.+|++.......+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~--~~i~~d~s~~~~~~~~~~ 642 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDED--AMVRIDMSEYMEKHSVAR 642 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCC--cEEEEechhhcccchHHH
Confidence 46899999999998888642 2223 999999999999999999999876433 677777776433222211
Q ss_pred HHHHHHHhhccCCCC--CCC-----CCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc
Q psy12150 116 KVKTFAQQTASGFNQ--DGK-----PCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV 177 (456)
Q Consensus 116 ~l~~~~~~~~~~~~~--~~~-----~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~ 177 (456)
.+ ..+....+. .+. ...++.||++||++.+.++.++.|++++++.. .++++|+++|-.
T Consensus 643 l~----g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g 718 (852)
T TIGR03346 643 LI----GAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG 718 (852)
T ss_pred hc----CCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcc
Confidence 11 000000000 000 00245699999999999999999999998652 467788888741
Q ss_pred cc-------------------------ccccccCCce-EEEecCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHH
Q psy12150 178 SC-------------------------IIQPLTSRCS-KFRFKPLAENTMLTRLQYICE-------QES--VMCDFKALE 222 (456)
Q Consensus 178 ~k-------------------------l~~~l~~r~~-~i~f~~~~~~el~~~l~~~~~-------~~~--~~i~~~~l~ 222 (456)
.. +.+.|..|+. ++.|.|++.+++.+++...+. ..+ +.+++++++
T Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~ 798 (852)
T TIGR03346 719 SQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALD 798 (852)
T ss_pred hHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHH
Confidence 11 2345667774 899999999999888776554 222 568999999
Q ss_pred HHHHHc---CCCHHHHHHHHHHHHH
Q psy12150 223 TLVETS---GGDMRRAITCLQSCAR 244 (456)
Q Consensus 223 ~L~~~s---~gdlr~~~~~L~~~~~ 244 (456)
.|++.. .++.|.+.+.+++...
T Consensus 799 ~L~~~~~~~~~gaR~L~~~i~~~i~ 823 (852)
T TIGR03346 799 FLAEAGYDPVYGARPLKRAIQREIE 823 (852)
T ss_pred HHHHhCCCCCCCchhHHHHHHHHHH
Confidence 999873 5889999999887654
No 177
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.37 E-value=1.4e-11 Score=121.35 Aligned_cols=209 Identities=19% Similarity=0.159 Sum_probs=138.7
Q ss_pred CcccccccHHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHH
Q psy12150 43 TIDDVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120 (456)
Q Consensus 43 ~~~~ivg~~~~~~~l~~~l~~~--~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~ 120 (456)
.+.+|+|+...+..+.+.++.= ..-.+||.|++||||..+|++|++.-.. ..-+++.+||.... ...+...+...
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R--~~kPfV~~NCAAlP-esLlESELFGH 297 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPR--RDKPFVKLNCAALP-ESLLESELFGH 297 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcc--cCCCceeeeccccc-hHHHHHHHhcc
Confidence 4678999999998888777532 1123999999999999999999986433 23478999998632 22222223222
Q ss_pred HHhhccCCCCCCCC----CCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc-------c
Q psy12150 121 AQQTASGFNQDGKP----CPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------S 178 (456)
Q Consensus 121 ~~~~~~~~~~~~~~----~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~-------~ 178 (456)
...++.+- ...++ .++...+|+||+..|+.+.|..|++.|++.. ..+++|.+||.. .
T Consensus 298 eKGAFTGA-~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V~~G 376 (550)
T COG3604 298 EKGAFTGA-INTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVRDG 376 (550)
T ss_pred cccccccc-hhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHHHcC
Confidence 22222221 11111 1466699999999999999999999998642 347788888842 2
Q ss_pred cccccccCCceEEEe--cCCCH--HH----HHHHHHHHHHHcCC---CCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhh
Q psy12150 179 CIIQPLTSRCSKFRF--KPLAE--NT----MLTRLQYICEQESV---MCDFKALETLVET-SGGDMRRAITCLQSCARLK 246 (456)
Q Consensus 179 kl~~~l~~r~~~i~f--~~~~~--~e----l~~~l~~~~~~~~~---~i~~~~l~~L~~~-s~gdlr~~~~~L~~~~~~~ 246 (456)
++-..|.-|..++.+ +|+-+ ++ ...++++...+.|. .+++++++.|..+ .+||+|++.|.++.++..+
T Consensus 377 ~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 377 EFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred cchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 233334444444333 33321 22 23445555555554 6899999999986 4999999999999999987
Q ss_pred CCCCCCHHHH
Q psy12150 247 GGEGIVNEDV 256 (456)
Q Consensus 247 ~~~~It~~~v 256 (456)
++.++..++
T Consensus 457 -~~~~~~~d~ 465 (550)
T COG3604 457 -GRLTRRGDL 465 (550)
T ss_pred -cccCCCcce
Confidence 566665553
No 178
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.9e-12 Score=130.13 Aligned_cols=229 Identities=20% Similarity=0.242 Sum_probs=148.3
Q ss_pred CCCCcchhccCCC----C-----cccccccHHHHHHHHHHHhc----CCC--CeEEEECCCCCcHHHHHHHHHHHhcCCc
Q psy12150 30 NKPVPWVEKYRPK----T-----IDDVIEQQEVVSVLKKCLSG----ADL--PHFLFYGPPGTGKTSTMIAACHQLFGDM 94 (456)
Q Consensus 30 ~~~~~w~eky~P~----~-----~~~ivg~~~~~~~l~~~l~~----~~~--~~~Ll~G~~G~GKT~~a~~l~~~l~~~~ 94 (456)
--+.||..+-.-. . =.+-.|.+.+++++.+++.- ... |-++|+||||+|||++++.+|+.++.+
T Consensus 299 ll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk- 377 (782)
T COG0466 299 LLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK- 377 (782)
T ss_pred HHhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC-
Confidence 4568997654321 1 12557888999998888742 122 339999999999999999999999774
Q ss_pred cccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCC-CCCCCCcEEEEEcCCCCccHHH----HHHHHHHHH-------
Q psy12150 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD-GKPCPPFKIVILDEADSMTHAA----QAALRRTME------- 162 (456)
Q Consensus 95 ~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~-~~~~~~~~iviIDE~d~l~~~~----~~~Ll~~le------- 162 (456)
|+.++....+...+++..-+++....+...-.. .+......++++||+|.|..+. ..+|++.|+
T Consensus 378 ----fvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F 453 (782)
T COG0466 378 ----FVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTF 453 (782)
T ss_pred ----EEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCch
Confidence 555555444444444332222211100000000 0000112399999999997542 356666653
Q ss_pred ------hc--cCcceEEEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHH-----HHcC-----CCCCHHHHHHH
Q psy12150 163 ------KE--TKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC-----EQES-----VMCDFKALETL 224 (456)
Q Consensus 163 ------~~--~~~~~lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~-----~~~~-----~~i~~~~l~~L 224 (456)
-+ -..+.||.++|....+..+|..|..++++..++++|-..+.++++ +..| +.++++++..|
T Consensus 454 ~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~i 533 (782)
T COG0466 454 SDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDI 533 (782)
T ss_pred hhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHH
Confidence 11 135789999999999999999999999999999999888776653 3333 56899999998
Q ss_pred HHHc--CCCHHHHHHHHHHHHHhh-------C-CC--CCCHHHHHHHhCCC
Q psy12150 225 VETS--GGDMRRAITCLQSCARLK-------G-GE--GIVNEDVLEVTGVI 263 (456)
Q Consensus 225 ~~~s--~gdlr~~~~~L~~~~~~~-------~-~~--~It~~~v~~~~~~~ 263 (456)
++.. ..-+|.+-+.+.+++.-+ . .. .|+..++.+.++..
T Consensus 534 I~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~ 584 (782)
T COG0466 534 IRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGVP 584 (782)
T ss_pred HHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCCc
Confidence 8754 334777777776655432 1 11 47777888887754
No 179
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.36 E-value=4.9e-12 Score=107.08 Aligned_cols=112 Identities=23% Similarity=0.280 Sum_probs=80.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCc--ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR--GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~ 146 (456)
++|+||||+|||++++.+++.+. .+++++++.... ........+..+........ . ..+|+|||+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~-----~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~----~~vl~iDe~ 67 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG-----FPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSA----K----PCVLFIDEI 67 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT-----SEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS----T----SEEEEEETG
T ss_pred CEEECcCCCCeeHHHHHHHhhcc-----cccccccccccccccccccccccccccccccccc----c----ceeeeeccc
Confidence 68999999999999999999974 367788877643 12223333333333322110 1 239999999
Q ss_pred CCccHHH-----------HHHHHHHHHhccC---cceEEEEecCccccccccc-CCce-EEEe
Q psy12150 147 DSMTHAA-----------QAALRRTMEKETK---STRFCLICNYVSCIIQPLT-SRCS-KFRF 193 (456)
Q Consensus 147 d~l~~~~-----------~~~Ll~~le~~~~---~~~lIl~~~~~~kl~~~l~-~r~~-~i~f 193 (456)
|.+.... .+.|+..+++... .+++|+++|..+++.+++. +|+. .++|
T Consensus 68 d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~ 130 (132)
T PF00004_consen 68 DKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEF 130 (132)
T ss_dssp GGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE
T ss_pred hhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEc
Confidence 9998765 6778888887665 4789999999999999999 8887 4554
No 180
>KOG0726|consensus
Probab=99.35 E-value=4e-12 Score=116.82 Aligned_cols=206 Identities=22% Similarity=0.299 Sum_probs=135.1
Q ss_pred hhccCCCCcccccccHHHHHHHHHHHh------------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEe
Q psy12150 36 VEKYRPKTIDDVIEQQEVVSVLKKCLS------------GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILEL 102 (456)
Q Consensus 36 ~eky~P~~~~~ivg~~~~~~~l~~~l~------------~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~ 102 (456)
.+|--..++.++-|.+..++++++.++ +-.+|. +++||+||+|||.+|++++++....+. .+
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFl-----Rv 250 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFL-----RV 250 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhh-----hh
Confidence 445444689999999999999999874 223343 999999999999999999998654332 22
Q ss_pred eCCC------CcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH-----------HHHHHHHHHHHh--
Q psy12150 103 NASD------DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEK-- 163 (456)
Q Consensus 103 n~~~------~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~-----------~~~~~Ll~~le~-- 163 (456)
-+++ ..+...+++.+.-.... .|+ ||||||+|.+.. +.|..++++|+.
T Consensus 251 vGseLiQkylGdGpklvRqlF~vA~e~---------apS----IvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQld 317 (440)
T KOG0726|consen 251 VGSELIQKYLGDGPKLVRELFRVAEEH---------APS----IVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD 317 (440)
T ss_pred hhHHHHHHHhccchHHHHHHHHHHHhc---------CCc----eEEeehhhhhccccccCCCccHHHHHHHHHHHHHhcc
Confidence 2221 12233333333222211 122 999999999843 245566666653
Q ss_pred ---ccCcceEEEEecCcccccccccCCce---EEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHH----HHcCCCH
Q psy12150 164 ---ETKSTRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKA-LETLV----ETSGGDM 232 (456)
Q Consensus 164 ---~~~~~~lIl~~~~~~kl~~~l~~r~~---~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~-l~~L~----~~s~gdl 232 (456)
....+.+|+++|....+.|+|.+.+. .++|+.|++..-+.++.-+-. +..+.+++ ++.++ ..++.|+
T Consensus 318 GFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs--~Mtl~~dVnle~li~~kddlSGAdI 395 (440)
T KOG0726|consen 318 GFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTS--RMTLAEDVNLEELIMTKDDLSGADI 395 (440)
T ss_pred CccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeec--ccchhccccHHHHhhcccccccccH
Confidence 23457799999999999999987765 799999998887776654332 23333222 33333 3467787
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHhC
Q psy12150 233 RRAITCLQSCARLKGGEGIVNEDVLEVTG 261 (456)
Q Consensus 233 r~~~~~L~~~~~~~~~~~It~~~v~~~~~ 261 (456)
..+..+.-.++....+..++.+|+.....
T Consensus 396 kAictEaGllAlRerRm~vt~~DF~ka~e 424 (440)
T KOG0726|consen 396 KAICTEAGLLALRERRMKVTMEDFKKAKE 424 (440)
T ss_pred HHHHHHHhHHHHHHHHhhccHHHHHHHHH
Confidence 77766665555544566788888876543
No 181
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.35 E-value=4e-11 Score=116.94 Aligned_cols=226 Identities=15% Similarity=0.190 Sum_probs=135.5
Q ss_pred hccCCC-CcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCc-cc-cceEEeeCCC-------
Q psy12150 37 EKYRPK-TIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YR-ERILELNASD------- 106 (456)
Q Consensus 37 eky~P~-~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~-~~-~~~~e~n~~~------- 106 (456)
++-+|. .|.+++||++.+..|...+.+.+..+++|.|++|||||++++.+++-+.... .. .++. .+...
T Consensus 8 ~~~~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~p~~~~~~ 86 (350)
T CHL00081 8 KKERPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSDPELMSDE 86 (350)
T ss_pred hccCCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCChhhhchh
Confidence 333444 7999999999999999998887777799999999999999999988764211 00 0010 00000
Q ss_pred -------------------------CcChHHHHHHH--HHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHH
Q psy12150 107 -------------------------DRGIQVIRDKV--KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRR 159 (456)
Q Consensus 107 -------------------------~~~~~~i~~~l--~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~ 159 (456)
....+.+...+ ............+.--..++..++++||++.+++..|..|++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLe 166 (350)
T CHL00081 87 VREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLD 166 (350)
T ss_pred hhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHH
Confidence 00000000000 000000000000000001355699999999999999999999
Q ss_pred HHHhcc-----------CcceEEEEe--cCc-ccccccccCCce-EEEecCCCH-HHHHHHHHHHHH-------------
Q psy12150 160 TMEKET-----------KSTRFCLIC--NYV-SCIIQPLTSRCS-KFRFKPLAE-NTMLTRLQYICE------------- 210 (456)
Q Consensus 160 ~le~~~-----------~~~~lIl~~--~~~-~kl~~~l~~r~~-~i~f~~~~~-~el~~~l~~~~~------------- 210 (456)
.|++.. ....|++++ |.. ..+.+++..|+. .+.+..++. ++..++++....
T Consensus 167 am~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~ 246 (350)
T CHL00081 167 SAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYE 246 (350)
T ss_pred HHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhc
Confidence 997621 012233333 322 246677778876 677777763 444444443211
Q ss_pred ----------------HcCCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhCCC
Q psy12150 211 ----------------QESVMCDFKALETLVETS---G-GDMRRAITCLQSCARLK---GGEGIVNEDVLEVTGVI 263 (456)
Q Consensus 211 ----------------~~~~~i~~~~l~~L~~~s---~-gdlr~~~~~L~~~~~~~---~~~~It~~~v~~~~~~~ 263 (456)
-..+.++++.++++++.+ + ...|..+..++.+..++ +...|+.+||..++...
T Consensus 247 ~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~v 322 (350)
T CHL00081 247 ESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLC 322 (350)
T ss_pred cccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 134678898888877654 3 25888777776554444 78899999999887544
No 182
>KOG2004|consensus
Probab=99.35 E-value=3.9e-12 Score=129.48 Aligned_cols=184 Identities=18% Similarity=0.276 Sum_probs=126.4
Q ss_pred cccccHHHHHHHHHHHhcCCCC----e--EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHH---
Q psy12150 46 DVIEQQEVVSVLKKCLSGADLP----H--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK--- 116 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~~~~~~----~--~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~--- 116 (456)
+-.|.+.+++++.+++.-+.+. . +.|+||||+|||++++.+|++++.++++ ++........+|+.-
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR-----fSvGG~tDvAeIkGHRRT 486 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFR-----FSVGGMTDVAEIKGHRRT 486 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEE-----EeccccccHHhhccccee
Confidence 6678899999999998654432 2 9999999999999999999999876543 333322222222221
Q ss_pred --------HHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH----HHHHHHHHHHh-------------cc--Ccce
Q psy12150 117 --------VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA----AQAALRRTMEK-------------ET--KSTR 169 (456)
Q Consensus 117 --------l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~----~~~~Ll~~le~-------------~~--~~~~ 169 (456)
+-+....-. ....+++|||+|.+... -..+|++.|+- |- ..+.
T Consensus 487 YVGAMPGkiIq~LK~v~----------t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 487 YVGAMPGKIIQCLKKVK----------TENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred eeccCChHHHHHHHhhC----------CCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence 111111100 12239999999998642 23456665531 11 2467
Q ss_pred EEEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHH-----H-----cCCCCCHHHHHHHHHHc--CCCHHHHHH
Q psy12150 170 FCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE-----Q-----ESVMCDFKALETLVETS--GGDMRRAIT 237 (456)
Q Consensus 170 lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~-----~-----~~~~i~~~~l~~L~~~s--~gdlr~~~~ 237 (456)
||+++|....+.++|+.|..+|+++.+..+|-..+.++++- + +.++++++++..|++.. ..-+|.+-.
T Consensus 557 FicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk 636 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQK 636 (906)
T ss_pred EEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHH
Confidence 88888999999999999999999999999998777665542 2 44679999998887653 345777777
Q ss_pred HHHHHHH
Q psy12150 238 CLQSCAR 244 (456)
Q Consensus 238 ~L~~~~~ 244 (456)
.+++++.
T Consensus 637 ~iekI~R 643 (906)
T KOG2004|consen 637 QIEKICR 643 (906)
T ss_pred HHHHHHH
Confidence 7766544
No 183
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.35 E-value=4.2e-11 Score=124.54 Aligned_cols=211 Identities=19% Similarity=0.161 Sum_probs=137.6
Q ss_pred CcccccccHHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHH
Q psy12150 43 TIDDVIEQQEVVSVLKKCLSGAD--LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120 (456)
Q Consensus 43 ~~~~ivg~~~~~~~l~~~l~~~~--~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~ 120 (456)
.+.+++|+...++.+.+.++.-. ..+++|+|++||||+++|++++..... ...+++.+||..... ..+...+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~~~~-~~~e~~lfG~ 261 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR--ADKPLVYLNCAALPE-SLAESELFGH 261 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc--CCCCeEEEEcccCCh-HHHHHHhcCc
Confidence 56789999988888877776432 234999999999999999999997543 234789999987432 2222111110
Q ss_pred HHhhccCCC--CCCC-CCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc-------cc
Q psy12150 121 AQQTASGFN--QDGK-PCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------SC 179 (456)
Q Consensus 121 ~~~~~~~~~--~~~~-~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~-------~k 179 (456)
....+.+.. ..+. ..++..++||||++.|+.+.|..|++++++.. ..+.+|++++.. ..
T Consensus 262 ~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~ 341 (509)
T PRK05022 262 VKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGR 341 (509)
T ss_pred cccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCC
Confidence 000000000 0000 01344589999999999999999999997643 246788877643 22
Q ss_pred ccccccCCce--EEEecCCCH--HHHHHHHHH----HHHHcC---CCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhhC
Q psy12150 180 IIQPLTSRCS--KFRFKPLAE--NTMLTRLQY----ICEQES---VMCDFKALETLVET-SGGDMRRAITCLQSCARLKG 247 (456)
Q Consensus 180 l~~~l~~r~~--~i~f~~~~~--~el~~~l~~----~~~~~~---~~i~~~~l~~L~~~-s~gdlr~~~~~L~~~~~~~~ 247 (456)
+...|..|.. .|+++|+.+ +++..++.. .+.+.| ..+++++++.|..+ ++||+|++.|.++.++..+.
T Consensus 342 f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 342 FRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred ccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 3344545544 567777764 455444443 333333 56999999999886 59999999999999988764
Q ss_pred CC------CCCHHHH
Q psy12150 248 GE------GIVNEDV 256 (456)
Q Consensus 248 ~~------~It~~~v 256 (456)
+. .|+.+++
T Consensus 422 ~~~~~~~~~i~~~~l 436 (509)
T PRK05022 422 ARGAGRIVTLEAQHL 436 (509)
T ss_pred CCccCccceecHHHc
Confidence 43 3665554
No 184
>KOG2227|consensus
Probab=99.34 E-value=1.2e-10 Score=113.82 Aligned_cols=208 Identities=18% Similarity=0.206 Sum_probs=143.6
Q ss_pred hhccCCCCcccccccHHHHHHHHHHHhc----CCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChH
Q psy12150 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSG----ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQ 111 (456)
Q Consensus 36 ~eky~P~~~~~ivg~~~~~~~l~~~l~~----~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~ 111 (456)
...+.|. .+.|++..++.+++|+.. .....+++.|.||+|||.....+...+.........+++|+.......
T Consensus 144 ~~t~~p~---~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 144 LNTAPPG---TLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred HhcCCCC---CccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 3345554 478999999999998753 333349999999999999999998887665555567899998755555
Q ss_pred HHHHHHHH-HHHhhccCCCCC---------CCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhc---cCcceEEEEecCc-
Q psy12150 112 VIRDKVKT-FAQQTASGFNQD---------GKPCPPFKIVILDEADSMTHAAQAALRRTMEKE---TKSTRFCLICNYV- 177 (456)
Q Consensus 112 ~i~~~l~~-~~~~~~~~~~~~---------~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~---~~~~~lIl~~~~~- 177 (456)
.+...+.. +.+......... ......--++++||.|+|....+..|..+.+.+ ....++|.++|..
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslD 300 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLD 300 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhh
Confidence 44443322 211111100000 000011238999999999887777777776654 3456667777753
Q ss_pred --ccccccccCCce----EEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHc---CCCHHHHHHHHHHHHHhh
Q psy12150 178 --SCIIQPLTSRCS----KFRFKPLAENTMLTRLQYICEQESVM-CDFKALETLVETS---GGDMRRAITCLQSCARLK 246 (456)
Q Consensus 178 --~kl~~~l~~r~~----~i~f~~~~~~el~~~l~~~~~~~~~~-i~~~~l~~L~~~s---~gdlr~~~~~L~~~~~~~ 246 (456)
..+.+.|..++. .+.|+|++.+++.++++.++..+... +-+.+++..++.. .||+|+++..++.+...+
T Consensus 301 lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~ 379 (529)
T KOG2227|consen 301 LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIA 379 (529)
T ss_pred HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 455666666543 89999999999999999999876544 4456888877653 699999999999776655
No 185
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.33 E-value=5.9e-11 Score=119.11 Aligned_cols=211 Identities=13% Similarity=0.123 Sum_probs=125.7
Q ss_pred ccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHH--HHHHHH
Q psy12150 45 DDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK--VKTFAQ 122 (456)
Q Consensus 45 ~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~--l~~~~~ 122 (456)
+.++|++++++.+...+..+. |++|+||||+|||++|+++++.+.... .+...++..... .++... +.....
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~---~F~~~~~~fttp-~DLfG~l~i~~~~~ 93 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNAR---AFEYLMTRFSTP-EEVFGPLSIQALKD 93 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccC---cceeeeeeecCc-HHhcCcHHHhhhhh
Confidence 357899999999988887653 699999999999999999999864321 122222221011 111110 111100
Q ss_pred hhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc----------CcceEEEEecCcc---cccccccCCce
Q psy12150 123 QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET----------KSTRFCLICNYVS---CIIQPLTSRCS 189 (456)
Q Consensus 123 ~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~----------~~~~lIl~~~~~~---kl~~~l~~r~~ 189 (456)
...+.....| +.....++|+||+..+++..++.|+..|++.. +..++++++|+.. ...+++..|+.
T Consensus 94 ~g~f~r~~~G-~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~DRFl 172 (498)
T PRK13531 94 EGRYQRLTSG-YLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYDRML 172 (498)
T ss_pred cCchhhhcCC-ccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHhhEE
Confidence 0000000011 11123399999999999999999999996532 2234455555432 23346777775
Q ss_pred -EEEecCCC-HHHHHHHHHHHHH-----------------------HcCCCCCHHHHHHHHHHc------C----CCHHH
Q psy12150 190 -KFRFKPLA-ENTMLTRLQYICE-----------------------QESVMCDFKALETLVETS------G----GDMRR 234 (456)
Q Consensus 190 -~i~f~~~~-~~el~~~l~~~~~-----------------------~~~~~i~~~~l~~L~~~s------~----gdlr~ 234 (456)
.+.+++++ .++..++|..... -..+.+++..++.+.+.. . -+.|.
T Consensus 173 iri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~ 252 (498)
T PRK13531 173 IRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRR 252 (498)
T ss_pred EEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHH
Confidence 67778886 4554666643211 134567777777766543 2 24666
Q ss_pred HHHHHHHH---HHhhCCCCCCHHHHHHHhCCC
Q psy12150 235 AITCLQSC---ARLKGGEGIVNEDVLEVTGVI 263 (456)
Q Consensus 235 ~~~~L~~~---~~~~~~~~It~~~v~~~~~~~ 263 (456)
.+..+..+ +.+.|+..|+++||. ++...
T Consensus 253 ~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~v 283 (498)
T PRK13531 253 WKKAIRLLQASAFFSGRDAIAPIDLI-LLKDC 283 (498)
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHH
Confidence 66655443 334478899999999 55433
No 186
>KOG0742|consensus
Probab=99.31 E-value=4.9e-11 Score=114.38 Aligned_cols=152 Identities=20% Similarity=0.250 Sum_probs=103.7
Q ss_pred cccccccHHHHHHHHHHHh--------cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChH--HH
Q psy12150 44 IDDVIEQQEVVSVLKKCLS--------GADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQ--VI 113 (456)
Q Consensus 44 ~~~ivg~~~~~~~l~~~l~--------~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~--~i 113 (456)
|+++|-++....+|.+... ++.+.+++||||||||||.+++.++..-+- ++.-+.+.|....+ .+
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGl-----DYA~mTGGDVAPlG~qaV 428 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGL-----DYAIMTGGDVAPLGAQAV 428 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCC-----ceehhcCCCccccchHHH
Confidence 8888888888777776642 344566999999999999999999987432 34444444433222 22
Q ss_pred HH--HHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH---------H---HHHHHHHHHHhccCcceEEEEecCccc
Q psy12150 114 RD--KVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH---------A---AQAALRRTMEKETKSTRFCLICNYVSC 179 (456)
Q Consensus 114 ~~--~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~---------~---~~~~Ll~~le~~~~~~~lIl~~~~~~k 179 (456)
.. .+.+...... ..-++||||+|.+.- + +.++|+-.--+.+...++++++|.+..
T Consensus 429 TkiH~lFDWakkS~-----------rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgd 497 (630)
T KOG0742|consen 429 TKIHKLFDWAKKSR-----------RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD 497 (630)
T ss_pred HHHHHHHHHHhhcc-----------cceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccc
Confidence 11 1222222221 223899999997632 1 233333322345567889999999999
Q ss_pred ccccccCCce-EEEecCCCHHHHHHHHHHHHHH
Q psy12150 180 IIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQ 211 (456)
Q Consensus 180 l~~~l~~r~~-~i~f~~~~~~el~~~l~~~~~~ 211 (456)
++.++..|+. +++|+-|-+++...+|...+.+
T Consensus 498 lDsAV~DRide~veFpLPGeEERfkll~lYlnk 530 (630)
T KOG0742|consen 498 LDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNK 530 (630)
T ss_pred hhHHHHhhhhheeecCCCChHHHHHHHHHHHHH
Confidence 9999999986 8999999999988888777664
No 187
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.31 E-value=1.1e-10 Score=113.98 Aligned_cols=216 Identities=15% Similarity=0.154 Sum_probs=130.4
Q ss_pred cccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcC-------Ccc-------------cc------
Q psy12150 44 IDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-------DMY-------------RE------ 97 (456)
Q Consensus 44 ~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~-------~~~-------------~~------ 97 (456)
|..++|+++++..+.-.+-.....+++|.|++|+|||+++++++..+.. +.. +.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 82 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQE 82 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhccc
Confidence 7889999999988876666555667999999999999999999987621 000 00
Q ss_pred ---------ceEEeeC--CC--CcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhc
Q psy12150 98 ---------RILELNA--SD--DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE 164 (456)
Q Consensus 98 ---------~~~e~n~--~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~ 164 (456)
++.++.. .. ..+..++...+. .......+.--..++..++++||++.+.+..|..|++.|++.
T Consensus 83 ~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~----~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g 158 (337)
T TIGR02030 83 PLSIIKKPVPVVDLPLGATEDRVCGTLDIERALT----EGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASG 158 (337)
T ss_pred ccccccCCCCcCCCCCCCcccceecchhHhhHhh----cCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhC
Confidence 0000000 00 001111111110 000000000000134569999999999999999999999764
Q ss_pred c-------------CcceEEEEecCc-ccccccccCCce-EEEecCCCH-HHHHHHHHHHHH------------------
Q psy12150 165 T-------------KSTRFCLICNYV-SCIIQPLTSRCS-KFRFKPLAE-NTMLTRLQYICE------------------ 210 (456)
Q Consensus 165 ~-------------~~~~lIl~~~~~-~kl~~~l~~r~~-~i~f~~~~~-~el~~~l~~~~~------------------ 210 (456)
. ..++++.+.|.. ..+.+++..|+. .+.+..+.. ++..++++....
T Consensus 159 ~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~ 238 (337)
T TIGR02030 159 WNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEA 238 (337)
T ss_pred CeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhc
Confidence 2 122333333322 346677888877 667777765 555555544211
Q ss_pred -----------HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhCCC
Q psy12150 211 -----------QESVMCDFKALETLVETS---GG-DMRRAITCLQSCARLK---GGEGIVNEDVLEVTGVI 263 (456)
Q Consensus 211 -----------~~~~~i~~~~l~~L~~~s---~g-dlr~~~~~L~~~~~~~---~~~~It~~~v~~~~~~~ 263 (456)
-..+.++++.+++++..+ +. ..|..+..+..+..++ +...|+.+||+.++...
T Consensus 239 ~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~v 309 (337)
T TIGR02030 239 LQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLA 309 (337)
T ss_pred CHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 134668888888776643 43 4788777776655544 77899999999876543
No 188
>KOG0729|consensus
Probab=99.30 E-value=3.7e-11 Score=109.21 Aligned_cols=204 Identities=17% Similarity=0.199 Sum_probs=128.4
Q ss_pred CCcccccccHHHHHHHHHHHhc------------CCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCc
Q psy12150 42 KTIDDVIEQQEVVSVLKKCLSG------------ADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (456)
Q Consensus 42 ~~~~~ivg~~~~~~~l~~~l~~------------~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~ 108 (456)
-++.++-|..+.+..+++.++- -.+|. +|+|||||+|||..++++++.... -++.+-.+...
T Consensus 174 vty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda-----cfirvigselv 248 (435)
T KOG0729|consen 174 VTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA-----CFIRVIGSELV 248 (435)
T ss_pred cccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc-----eEEeehhHHHH
Confidence 4789999999999999887642 22333 999999999999999999997533 34433232200
Q ss_pred --ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH-----------HHHHHHHHHHH-----hccCcceE
Q psy12150 109 --GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTME-----KETKSTRF 170 (456)
Q Consensus 109 --~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~-----------~~~~~Ll~~le-----~~~~~~~l 170 (456)
-+++=...+.++...+. ..+.| +||+||+|.+.. +.|...++++. ++..+..+
T Consensus 249 qkyvgegarmvrelf~mar-----tkkac----iiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikv 319 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMAR-----TKKAC----IIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKV 319 (435)
T ss_pred HHHhhhhHHHHHHHHHHhc-----ccceE----EEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 00111122333333332 22344 999999998853 34556666664 35567889
Q ss_pred EEEecCcccccccccCCce---EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCCCHH-HHHHHHHHHHHh
Q psy12150 171 CLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFK-ALETLVETSGGDMR-RAITCLQSCARL 245 (456)
Q Consensus 171 Il~~~~~~kl~~~l~~r~~---~i~f~~~~~~el~~~l~~~~~~~~~~i~~~-~l~~L~~~s~gdlr-~~~~~L~~~~~~ 245 (456)
++++|.+..+.++|.+.+. .++|.-|+-+-...+++-+++.. .++.+ -.++|++.|+.+-. .+...+-.+..+
T Consensus 320 lmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksm--sverdir~ellarlcpnstgaeirsvcteagmf 397 (435)
T KOG0729|consen 320 LMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSM--SVERDIRFELLARLCPNSTGAEIRSVCTEAGMF 397 (435)
T ss_pred EeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEecccc--ccccchhHHHHHhhCCCCcchHHHHHHHHhhHH
Confidence 9999999999999987765 79999888877777776655532 23322 35667777654322 222333333333
Q ss_pred h---CCCCCCHHHHHHHhC
Q psy12150 246 K---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 246 ~---~~~~It~~~v~~~~~ 261 (456)
+ ..+..|..|..+++.
T Consensus 398 airarrk~atekdfl~av~ 416 (435)
T KOG0729|consen 398 AIRARRKVATEKDFLDAVN 416 (435)
T ss_pred HHHHHhhhhhHHHHHHHHH
Confidence 3 455667777655543
No 189
>PRK14700 recombination factor protein RarA; Provisional
Probab=99.30 E-value=8.3e-11 Score=110.46 Aligned_cols=138 Identities=12% Similarity=0.049 Sum_probs=110.4
Q ss_pred cceEEEEec--CcccccccccCCceEEEecCCCHHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCCHHHHHHH
Q psy12150 167 STRFCLICN--YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE------SVMCDFKALETLVETSGGDMRRAITC 238 (456)
Q Consensus 167 ~~~lIl~~~--~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~------~~~i~~~~l~~L~~~s~gdlr~~~~~ 238 (456)
.+++|.+|+ +...+.++|+|||.++.|.+++.+++..++++.+..+ .+.+++++++.|+..++||.|.++|.
T Consensus 8 ~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN~ 87 (300)
T PRK14700 8 KIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILNL 87 (300)
T ss_pred cEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHHH
Confidence 345555553 4578999999999999999999999999999988752 36799999999999999999999999
Q ss_pred HHHHHHhh-CC--CCCCHHHHHHHhCCC------CHHHHHHHHcc-------cchHHHHHHHHHHHHhccCHHHHHHHHH
Q psy12150 239 LQSCARLK-GG--EGIVNEDVLEVTGVI------PKPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFH 302 (456)
Q Consensus 239 L~~~~~~~-~~--~~It~~~v~~~~~~~------~~~~i~~l~~~-------~~~~~a~~~~~~l~~~~~~~~~i~~q~~ 302 (456)
|+.++... +. ..||.+.+++++... ..+.-++++.+ .|.+.|+.|+..|++.||+|.-|.|.+-
T Consensus 88 LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLi 167 (300)
T PRK14700 88 LERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRML 167 (300)
T ss_pred HHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99976533 22 239999999987633 12344444444 7889999999999999999999988654
Q ss_pred HH
Q psy12150 303 DI 304 (456)
Q Consensus 303 ~l 304 (456)
.+
T Consensus 168 i~ 169 (300)
T PRK14700 168 CI 169 (300)
T ss_pred HH
Confidence 33
No 190
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=99.30 E-value=6.5e-12 Score=111.76 Aligned_cols=163 Identities=15% Similarity=0.201 Sum_probs=113.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC-CccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCC-
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA- 146 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~-~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~- 146 (456)
|+|||+.-.-+...++.+.+.+.. +....++..++..+. ...+.+..+.+.+.+ +++++|+|.++
T Consensus 1 Yll~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~s~slF---------~~~klvii~~~~ 67 (172)
T PF06144_consen 1 YLLYGEDSFLIEEYIKKIRKALIKKDFDDFNVIVFDGSED----DIDELLEELQSPSLF---------GDKKLVIIKNAP 67 (172)
T ss_dssp EEEEES-HHHHHHHHHHHHHHHHTTTEEEEEEEE-STTS-----HHH-HTTTSTTTTSS---------SSEEEEEEE---
T ss_pred CEEEeCcHHHHHHHHHHHHHHhhcCCCccceEEEEccccC----cHHHHHHHHhcCCcc---------CCCeEEEEecCc
Confidence 799999988888888888888443 333345555555541 122222222222222 37889999999
Q ss_pred ---CCccHHHHHHHHHHHHhccCcceEEEEec-Cc---ccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q psy12150 147 ---DSMTHAAQAALRRTMEKETKSTRFCLICN-YV---SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFK 219 (456)
Q Consensus 147 ---d~l~~~~~~~Ll~~le~~~~~~~lIl~~~-~~---~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~ 219 (456)
+....+....|..+++++++++.+|+.++ .. .++.+.+.+.+.++.|.+++..++..|++..+++.|+.++++
T Consensus 68 ~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~ 147 (172)
T PF06144_consen 68 FLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAKKNGLKIDPD 147 (172)
T ss_dssp --TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HH
T ss_pred cccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 44556678899999999999888888877 32 356788888999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH
Q psy12150 220 ALETLVETSGGDMRRAITCLQSCAR 244 (456)
Q Consensus 220 ~l~~L~~~s~gdlr~~~~~L~~~~~ 244 (456)
+++.|+..+++|++.+.+++++++.
T Consensus 148 a~~~L~~~~~~d~~~l~~EleKL~L 172 (172)
T PF06144_consen 148 AAQYLIERVGNDLSLLQNELEKLSL 172 (172)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcC
Confidence 9999999999999999999999863
No 191
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.29 E-value=4.7e-11 Score=111.20 Aligned_cols=187 Identities=18% Similarity=0.263 Sum_probs=107.5
Q ss_pred ccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHH---------H
Q psy12150 47 VIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK---------V 117 (456)
Q Consensus 47 ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~---------l 117 (456)
++|++..++.|.+++.++...+++|+||.|+|||++++.+.+.+..... ..+.++............. +
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGY--KVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EE--CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC--cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 5799999999999999877677999999999999999999998743222 2222333222211111111 0
Q ss_pred HHHHHhhccCCC-------CCCCC-------------CCCcEEEEEcCCCCcc------HHHHHHHHHHHHh--ccCcce
Q psy12150 118 KTFAQQTASGFN-------QDGKP-------------CPPFKIVILDEADSMT------HAAQAALRRTMEK--ETKSTR 169 (456)
Q Consensus 118 ~~~~~~~~~~~~-------~~~~~-------------~~~~~iviIDE~d~l~------~~~~~~Ll~~le~--~~~~~~ 169 (456)
............ ..... ...+-+|+|||++.+. ......|..+++. ...+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS 158 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce
Confidence 011111000000 00000 0123599999999998 3445666666665 234455
Q ss_pred EEEEecCc------ccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Q psy12150 170 FCLICNYV------SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMC--DFKALETLVETSGGDMRRAI 236 (456)
Q Consensus 170 lIl~~~~~------~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i--~~~~l~~L~~~s~gdlr~~~ 236 (456)
+|+++... ..-..++..|+..+.+++++.++..+++...+... ..+ +++.++.++..++|.++.+.
T Consensus 159 ~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 159 IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHH
T ss_pred EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHh
Confidence 55555432 12345577888889999999999999999988766 655 99999999999999998764
No 192
>KOG0740|consensus
Probab=99.28 E-value=3.4e-11 Score=118.66 Aligned_cols=180 Identities=17% Similarity=0.175 Sum_probs=125.0
Q ss_pred hccCCCCcccccccHHHHHHHHHHHh----------cCCC--CeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeC
Q psy12150 37 EKYRPKTIDDVIEQQEVVSVLKKCLS----------GADL--PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (456)
Q Consensus 37 eky~P~~~~~ivg~~~~~~~l~~~l~----------~~~~--~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~ 104 (456)
++-++-.|+++.|.+.+.+.+.+.+- +-+. ..+|+.||||+|||.+++++|.+... .++.+.+
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~a-----tff~iSa 219 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGA-----TFFNISA 219 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcc-----eEeeccH
Confidence 34455678899998888877776642 2222 23999999999999999999999755 4555555
Q ss_pred CCCcC--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH------------HHHHHHHHHH---hccCc
Q psy12150 105 SDDRG--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA------------AQAALRRTME---KETKS 167 (456)
Q Consensus 105 ~~~~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~------------~~~~Ll~~le---~~~~~ 167 (456)
+...+ .+.....+..+...+... .| .|+||||+|.+... ..+.|++..- .+.+.
T Consensus 220 ssLtsK~~Ge~eK~vralf~vAr~~-----qP----svifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~dr 290 (428)
T KOG0740|consen 220 SSLTSKYVGESEKLVRALFKVARSL-----QP----SVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDR 290 (428)
T ss_pred HHhhhhccChHHHHHHHHHHHHHhc-----CC----eEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCe
Confidence 54221 222233333333332221 22 39999999988543 1234444332 23456
Q ss_pred ceEEEEecCcccccccccCCce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q psy12150 168 TRFCLICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG 230 (456)
Q Consensus 168 ~~lIl~~~~~~kl~~~l~~r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g 230 (456)
++++.++|.++.+..++++|+. ++.++.|+.+....++.+.+.+.+..+.+..++.|++.+.|
T Consensus 291 vlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Teg 354 (428)
T KOG0740|consen 291 VLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEG 354 (428)
T ss_pred EEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence 7777788899999999999988 66778888888888888888888888999999999998765
No 193
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=5.6e-11 Score=124.99 Aligned_cols=190 Identities=20% Similarity=0.289 Sum_probs=135.7
Q ss_pred cccccHHHHHHHHHHHhcCC--------C-CeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHH
Q psy12150 46 DVIEQQEVVSVLKKCLSGAD--------L-PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK 116 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~~~~--------~-~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~ 116 (456)
.++||++++..+.+.++..+ + ..++|.||+|+|||.++++++..++++.. .++.+|+|+......+...
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~--aliR~DMSEy~EkHsVSrL 569 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQ--ALIRIDMSEYMEKHSVSRL 569 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCc--cceeechHHHHHHHHHHHH
Confidence 57899999999988886322 2 23999999999999999999999987543 6888888886555444333
Q ss_pred HHHHHHhhccCCCCC--CCC-----CCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc-
Q psy12150 117 VKTFAQQTASGFNQD--GKP-----CPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV- 177 (456)
Q Consensus 117 l~~~~~~~~~~~~~~--~~~-----~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~- 177 (456)
...++...+.. |.. ..+|.||++||++.-.++.++.|++.|++.. .++++|+|+|--
T Consensus 570 ----IGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs 645 (786)
T COG0542 570 ----IGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGS 645 (786)
T ss_pred ----hCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccch
Confidence 22332222111 110 1467899999999999999999999998642 468899998721
Q ss_pred --------c-------------------cccccccCCce-EEEecCCCHHHHHHHHHHHHHH-------cCC--CCCHHH
Q psy12150 178 --------S-------------------CIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQ-------ESV--MCDFKA 220 (456)
Q Consensus 178 --------~-------------------kl~~~l~~r~~-~i~f~~~~~~el~~~l~~~~~~-------~~~--~i~~~~ 220 (456)
. .+.|.+.+|.. +|.|.+++.+.+.+++...+.+ .++ .+++++
T Consensus 646 ~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a 725 (786)
T COG0542 646 EEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEA 725 (786)
T ss_pred HHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHH
Confidence 0 02355677776 8999999999998887766542 343 578999
Q ss_pred HHHHHHHcC---CCHHHHHHHHHH
Q psy12150 221 LETLVETSG---GDMRRAITCLQS 241 (456)
Q Consensus 221 l~~L~~~s~---gdlr~~~~~L~~ 241 (456)
.+.|++.+- .-.|-+.+.++.
T Consensus 726 ~~~l~~~gyd~~~GARpL~R~Iq~ 749 (786)
T COG0542 726 KDFLAEKGYDPEYGARPLRRAIQQ 749 (786)
T ss_pred HHHHHHhccCCCcCchHHHHHHHH
Confidence 999998753 234555555554
No 194
>KOG2680|consensus
Probab=99.27 E-value=1.2e-10 Score=107.64 Aligned_cols=121 Identities=20% Similarity=0.277 Sum_probs=100.0
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecC------------cccccccccCCceEEEecCCCHHHHHHHHH
Q psy12150 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY------------VSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206 (456)
Q Consensus 139 ~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~------------~~kl~~~l~~r~~~i~f~~~~~~el~~~l~ 206 (456)
.++||||++.|.-+++..|.+.+++.- .+++++++|. ++-+.-.+..|...+...|++.+++..+|+
T Consensus 290 GVLFIDEvHMLDIEcFsFlNrAlE~d~-~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL~ 368 (454)
T KOG2680|consen 290 GVLFIDEVHMLDIECFSFLNRALENDM-APIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKILR 368 (454)
T ss_pred ceEEEeeehhhhhHHHHHHHHHhhhcc-CcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHHH
Confidence 499999999999999999999998643 3456666653 345666788999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhh---CCCCCCHHHHHHHh
Q psy12150 207 YICEQESVMCDFKALETLVETS-GGDMRRAITCLQSCARLK---GGEGIVNEDVLEVT 260 (456)
Q Consensus 207 ~~~~~~~~~i~~~~l~~L~~~s-~gdlr~~~~~L~~~~~~~---~~~~It~~~v~~~~ 260 (456)
-+|.++.+.+++++++.|.... ..++|.+++.+..+...+ .+..+..+||..+.
T Consensus 369 iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y 426 (454)
T KOG2680|consen 369 IRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVY 426 (454)
T ss_pred hhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHH
Confidence 9999999999999999998865 568999999997665544 46778888887654
No 195
>KOG0736|consensus
Probab=99.27 E-value=5.3e-11 Score=122.24 Aligned_cols=168 Identities=19% Similarity=0.262 Sum_probs=103.4
Q ss_pred CcccccccHHHHHHHHHHHhc-----------CCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCC----
Q psy12150 43 TIDDVIEQQEVVSVLKKCLSG-----------ADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD---- 106 (456)
Q Consensus 43 ~~~~ivg~~~~~~~l~~~l~~-----------~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~---- 106 (456)
+|+|+-|-++++..+.+.++- -+.+. +|||||||||||.+|+++|.++. .+++.+.+.+
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-----L~FlSVKGPELLNM 744 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-----LNFLSVKGPELLNM 744 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-----eeEEeecCHHHHHH
Confidence 799999999999999888742 22233 99999999999999999999863 3455443332
Q ss_pred --CcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH-------------HHHHHHHHHH---h-ccCc
Q psy12150 107 --DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA-------------AQAALRRTME---K-ETKS 167 (456)
Q Consensus 107 --~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~-------------~~~~Ll~~le---~-~~~~ 167 (456)
..+...+++..+ .+. ...|| |||+||+|.+.++ ....|+.-|+ + ....
T Consensus 745 YVGqSE~NVR~VFe----rAR-----~A~PC----VIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~ 811 (953)
T KOG0736|consen 745 YVGQSEENVREVFE----RAR-----SAAPC----VIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQD 811 (953)
T ss_pred HhcchHHHHHHHHH----Hhh-----ccCCe----EEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCc
Confidence 112233333332 221 23566 9999999999653 2233444343 2 2334
Q ss_pred ceEEEEecCcccccccccCCce---EEEecCCCHHHH-HHHHHHHHHHcCCCCCHH-HHHHHHHHcCC
Q psy12150 168 TRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTM-LTRLQYICEQESVMCDFK-ALETLVETSGG 230 (456)
Q Consensus 168 ~~lIl~~~~~~kl~~~l~~r~~---~i~f~~~~~~el-~~~l~~~~~~~~~~i~~~-~l~~L~~~s~g 230 (456)
+.+|-++|+++-++++|.+-+. -+...+....+- .++|+..-+ ..+++++ .+..|++.++-
T Consensus 812 VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTr--kFkLdedVdL~eiAk~cp~ 877 (953)
T KOG0736|consen 812 VFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTR--KFKLDEDVDLVEIAKKCPP 877 (953)
T ss_pred eEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHH--HccCCCCcCHHHHHhhCCc
Confidence 5556666778888888886654 455555554443 333443333 3444433 36677776643
No 196
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.27 E-value=1.9e-10 Score=124.11 Aligned_cols=209 Identities=17% Similarity=0.192 Sum_probs=134.3
Q ss_pred CCcccccccHHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHH
Q psy12150 42 KTIDDVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119 (456)
Q Consensus 42 ~~~~~ivg~~~~~~~l~~~l~~~--~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~ 119 (456)
.+|++++|+...+..+.+.++.. ...+++|+|++|||||++|++++...... ..+++.+||..... ..+...+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~~~~-~~~~~~lfg 449 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAAMPA-GLLESDLFG 449 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEecccCCh-hHhhhhhcC
Confidence 46889999998888877666532 22359999999999999999999875332 33788889886421 222221111
Q ss_pred HHHhhccCCCC--CC-CCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc-c------
Q psy12150 120 FAQQTASGFNQ--DG-KPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-S------ 178 (456)
Q Consensus 120 ~~~~~~~~~~~--~~-~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~-~------ 178 (456)
.....+.+... .+ -..++..++||||++.|+...|..|++++++.. ..+++|++++.. .
T Consensus 450 ~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~ 529 (686)
T PRK15429 450 HERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 529 (686)
T ss_pred cccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcC
Confidence 00000000000 00 000234599999999999999999999997642 345787777643 1
Q ss_pred cccccccCCce--EEEecCCCH--HHHHHHHH----HHHHHcCC---CCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhh
Q psy12150 179 CIIQPLTSRCS--KFRFKPLAE--NTMLTRLQ----YICEQESV---MCDFKALETLVET-SGGDMRRAITCLQSCARLK 246 (456)
Q Consensus 179 kl~~~l~~r~~--~i~f~~~~~--~el~~~l~----~~~~~~~~---~i~~~~l~~L~~~-s~gdlr~~~~~L~~~~~~~ 246 (456)
.+...+..|.. .++++|+.+ +++..+++ +.+.+.|. .+++++++.|..+ ++||+|++.+.++.++..+
T Consensus 530 ~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 530 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred cccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 12223444433 577777764 45544444 33443343 4799999998876 5999999999999998876
Q ss_pred CCCCCCH
Q psy12150 247 GGEGIVN 253 (456)
Q Consensus 247 ~~~~It~ 253 (456)
.+..|+.
T Consensus 610 ~~~~i~~ 616 (686)
T PRK15429 610 RGNVLQL 616 (686)
T ss_pred CCCcccc
Confidence 6666665
No 197
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.27 E-value=5.4e-11 Score=119.25 Aligned_cols=187 Identities=20% Similarity=0.220 Sum_probs=113.1
Q ss_pred cccccHHHHHHHHHHHhc-------C---------CCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcC
Q psy12150 46 DVIEQQEVVSVLKKCLSG-------A---------DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG 109 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~~-------~---------~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~ 109 (456)
.++||+.+++.+...+.+ + ...++||+||||||||++|+++++.+.. +++.++++....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~-----pf~~id~~~l~~ 146 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV-----PFAIADATTLTE 146 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC-----Cceecchhhccc
Confidence 479999999888665511 0 1235999999999999999999998744 455555543221
Q ss_pred h----HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH--------------HHHHHHHHHHhcc------
Q psy12150 110 I----QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--------------AQAALRRTMEKET------ 165 (456)
Q Consensus 110 ~----~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~--------------~~~~Ll~~le~~~------ 165 (456)
. ..+...+..+......... . ..+.+|||||+|.+... .|+.|++.|+...
T Consensus 147 ~gyvG~d~e~~l~~l~~~~~~~~~-~----a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~ 221 (412)
T PRK05342 147 AGYVGEDVENILLKLLQAADYDVE-K----AQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQ 221 (412)
T ss_pred CCcccchHHHHHHHHHHhccccHH-H----cCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCC
Confidence 1 1222223222221110000 0 13459999999999753 7899999997421
Q ss_pred ---------------CcceEEEEecCc---------------------c-----------------------cccccccC
Q psy12150 166 ---------------KSTRFCLICNYV---------------------S-----------------------CIIQPLTS 186 (456)
Q Consensus 166 ---------------~~~~lIl~~~~~---------------------~-----------------------kl~~~l~~ 186 (456)
.++.||+.++.. . .+.|.+..
T Consensus 222 gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg 301 (412)
T PRK05342 222 GGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG 301 (412)
T ss_pred CCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC
Confidence 112233222100 0 02455666
Q ss_pred Cce-EEEecCCCHHHHHHHHHH----HH-------HHcCC--CCCHHHHHHHHHHc---CCCHHHHHHHHHHH
Q psy12150 187 RCS-KFRFKPLAENTMLTRLQY----IC-------EQESV--MCDFKALETLVETS---GGDMRRAITCLQSC 242 (456)
Q Consensus 187 r~~-~i~f~~~~~~el~~~l~~----~~-------~~~~~--~i~~~~l~~L~~~s---~gdlr~~~~~L~~~ 242 (456)
|.. ++.|.+++.+++.+++.. .+ ...++ .+++++++.|++.+ ..-.|.+.+.+++.
T Consensus 302 Rld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~ 374 (412)
T PRK05342 302 RLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEI 374 (412)
T ss_pred CCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHH
Confidence 765 789999999999998872 22 33444 57999999999874 22345555555443
No 198
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=9.3e-11 Score=120.33 Aligned_cols=203 Identities=21% Similarity=0.234 Sum_probs=129.3
Q ss_pred CCCCcccccccHHHHHHHHHHH---h--------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC
Q psy12150 40 RPKTIDDVIEQQEVVSVLKKCL---S--------GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (456)
Q Consensus 40 ~P~~~~~ivg~~~~~~~l~~~l---~--------~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~ 107 (456)
...+|.|+.|.++.+.++.+.+ + ++++|. ++++||||||||.+|++++.+.. .+++.++.++.
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~-----VPFf~iSGS~F 219 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG-----VPFFSISGSDF 219 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC-----CCceeccchhh
Confidence 3458999999999887776665 3 345555 99999999999999999998753 35666666652
Q ss_pred ------cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH--------------HHHHHHHHHHhcc--
Q psy12150 108 ------RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--------------AQAALRRTMEKET-- 165 (456)
Q Consensus 108 ------~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~--------------~~~~Ll~~le~~~-- 165 (456)
.+...+++...+.... .|| ||||||+|..... ..+.|+--|+...
T Consensus 220 VemfVGvGAsRVRdLF~qAkk~---------aP~----IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 220 VEMFVGVGASRVRDLFEQAKKN---------APC----IIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred hhhhcCCCcHHHHHHHHHhhcc---------CCC----eEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 2223344443333222 344 9999999988542 2334444444333
Q ss_pred CcceEEEEecCcccccccccCCce---EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHHH
Q psy12150 166 KSTRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR-RAITCLQS 241 (456)
Q Consensus 166 ~~~~lIl~~~~~~kl~~~l~~r~~---~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr-~~~~~L~~ 241 (456)
..++++.++|.+.-++++|.+-+. .+....|+-....++++-+++.-... .+-.+..+++.++|... .+.|.+..
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfsGAdL~nl~NE 365 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFSGADLANLLNE 365 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcccchHhhhHHH
Confidence 234555556666667788875543 78888888899999999777654433 12234448888876332 23344434
Q ss_pred HHHhh---CCCCCCHHHHHHHhC
Q psy12150 242 CARLK---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 242 ~~~~~---~~~~It~~~v~~~~~ 261 (456)
++.++ ....|+..++.+...
T Consensus 366 Aal~aar~n~~~i~~~~i~ea~d 388 (596)
T COG0465 366 AALLAARRNKKEITMRDIEEAID 388 (596)
T ss_pred HHHHHHHhcCeeEeccchHHHHH
Confidence 44433 566788877776553
No 199
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.25 E-value=1.3e-10 Score=99.51 Aligned_cols=141 Identities=28% Similarity=0.346 Sum_probs=91.2
Q ss_pred cccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccC
Q psy12150 48 IEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASG 127 (456)
Q Consensus 48 vg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~ 127 (456)
+|++..+..+...+......+++++||+|+|||++++.+++.+... ...++.+++.......................
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHFLVRLLFE 78 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhhhHhHHHH
Confidence 3677888889888877555679999999999999999999987532 23566666665333222222111000000000
Q ss_pred CCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhc------cCcceEEEEecCcc--cccccccCCc-eEEEec
Q psy12150 128 FNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE------TKSTRFCLICNYVS--CIIQPLTSRC-SKFRFK 194 (456)
Q Consensus 128 ~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~------~~~~~lIl~~~~~~--kl~~~l~~r~-~~i~f~ 194 (456)
.... ....++++||++.+.......+.+.++.. ...+.+|++++... .+.+.+.+|+ ..+.++
T Consensus 79 ~~~~----~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 79 LAEK----AKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred hhcc----CCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 0000 13459999999999777777777777765 34667777777655 6677788888 466554
No 200
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=7.8e-11 Score=103.99 Aligned_cols=128 Identities=16% Similarity=0.145 Sum_probs=109.4
Q ss_pred CCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccc
Q psy12150 105 SDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPL 184 (456)
Q Consensus 105 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l 184 (456)
.+..+++++++.+......+. ..+ +||++++.|+.+++++|++.+|+|+.+++|+++++.+.++.+.+
T Consensus 34 ~~~i~Vd~iReii~~~~~~~~-----------~~k-~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI 101 (206)
T PRK08485 34 KEEFKIEDAKEVIAEAYIAES-----------EEK-IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTI 101 (206)
T ss_pred CCCCCHHHHHHHHHHHhhCCC-----------CcE-EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHH
Confidence 335788888888776654431 223 56789999999999999999999999999999999999999999
Q ss_pred cCCceE-------------EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q psy12150 185 TSRCSK-------------FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245 (456)
Q Consensus 185 ~~r~~~-------------i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~ 245 (456)
+|||+. +.|.+++.+++.++++. +.+++....+++.+.|+..+.|.+|.++...+....+
T Consensus 102 ~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~l~~ 174 (206)
T PRK08485 102 RSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEEELEY 174 (206)
T ss_pred HhhheeccccccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence 999985 77899999999999999 7788888899999999999999999987777766554
No 201
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.23 E-value=2.9e-10 Score=116.90 Aligned_cols=212 Identities=17% Similarity=0.184 Sum_probs=137.1
Q ss_pred CcccccccHHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHH
Q psy12150 43 TIDDVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120 (456)
Q Consensus 43 ~~~~ivg~~~~~~~l~~~l~~~--~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~ 120 (456)
.+..++|....+..+...+..- ...+++++|++|+||+++|+.++..... ...+++.+||..... ..+...+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~--~~~~~v~v~c~~~~~-~~~~~~lfg~ 213 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDR--KDKRFVAINCAAIPE-NLLESELFGY 213 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCc--CCCCeEEEECCCCCh-HHHHHHhcCC
Confidence 4567888887777777666532 2234999999999999999999986433 234688899987432 2222221110
Q ss_pred HHhhccCC--CCCCCC-CCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc-------cc
Q psy12150 121 AQQTASGF--NQDGKP-CPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------SC 179 (456)
Q Consensus 121 ~~~~~~~~--~~~~~~-~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~-------~k 179 (456)
....+.+. ...|.. .++..+|||||++.|+...|..|++++++.. ..+.+|++++.. ..
T Consensus 214 ~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~ 293 (445)
T TIGR02915 214 EKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGT 293 (445)
T ss_pred CCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCC
Confidence 00010000 000000 1345599999999999999999999998642 245777777643 22
Q ss_pred ccccccCCce--EEEecCCCH--HHHHHH----HHHHHHHcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhC
Q psy12150 180 IIQPLTSRCS--KFRFKPLAE--NTMLTR----LQYICEQES---VMCDFKALETLVETS-GGDMRRAITCLQSCARLKG 247 (456)
Q Consensus 180 l~~~l~~r~~--~i~f~~~~~--~el~~~----l~~~~~~~~---~~i~~~~l~~L~~~s-~gdlr~~~~~L~~~~~~~~ 247 (456)
+.+.|..|.. .++++|+.+ +++..+ +...+.+.+ ..+++++++.|..+. +||+|++.+.++.++..+.
T Consensus 294 ~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~ 373 (445)
T TIGR02915 294 FREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAE 373 (445)
T ss_pred ccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 3333445544 566666653 344333 333343334 458999999998875 9999999999999988777
Q ss_pred CCCCCHHHHH
Q psy12150 248 GEGIVNEDVL 257 (456)
Q Consensus 248 ~~~It~~~v~ 257 (456)
+..|+.+++.
T Consensus 374 ~~~i~~~~l~ 383 (445)
T TIGR02915 374 GNQITAEDLG 383 (445)
T ss_pred CCcccHHHcC
Confidence 7789888763
No 202
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.23 E-value=4.9e-10 Score=100.78 Aligned_cols=192 Identities=18% Similarity=0.218 Sum_probs=132.1
Q ss_pred hhccCCCCcccccccHHHHHHHHH----HHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChH
Q psy12150 36 VEKYRPKTIDDVIEQQEVVSVLKK----CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQ 111 (456)
Q Consensus 36 ~eky~P~~~~~ivg~~~~~~~l~~----~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~ 111 (456)
+..+.|-.+.+++|-+...+.|.+ ++++....|+|++|..|+|||++++++..++..... ..+|++..+.....
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl--rLVEV~k~dl~~Lp 128 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGL--RLVEVDKEDLATLP 128 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCC--eEEEEcHHHHhhHH
Confidence 345556678899998887766643 444444444999999999999999999999987665 58999887755444
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH-HHHHHHHHHH----hccCcceEEEEecCcccccc----
Q psy12150 112 VIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA-AQAALRRTME----KETKSTRFCLICNYVSCIIQ---- 182 (456)
Q Consensus 112 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~-~~~~Ll~~le----~~~~~~~lIl~~~~~~kl~~---- 182 (456)
.+.+.++.. + .+=|||+|+..+=..+ ....|...|+ ..|.+++|..++|.++-+..
T Consensus 129 ~l~~~Lr~~---~------------~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~d 193 (287)
T COG2607 129 DLVELLRAR---P------------EKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKD 193 (287)
T ss_pred HHHHHHhcC---C------------ceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhh
Confidence 444443332 1 2339999998665444 3444444554 55677777777775432210
Q ss_pred ------------------cccCCce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH-----HHcCCCHHHHHHH
Q psy12150 183 ------------------PLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLV-----ETSGGDMRRAITC 238 (456)
Q Consensus 183 ------------------~l~~r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~-----~~s~gdlr~~~~~ 238 (456)
.+..|+. .+.|.|.+.++...++...+++.++.++++.++.=+ .+.+.+-|.+-+.
T Consensus 194 n~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF 273 (287)
T COG2607 194 NEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQF 273 (287)
T ss_pred CCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhHHHH
Confidence 1234444 899999999999999999999999999876665533 3335567777777
Q ss_pred HHHHHH
Q psy12150 239 LQSCAR 244 (456)
Q Consensus 239 L~~~~~ 244 (456)
++.++.
T Consensus 274 ~~~~~g 279 (287)
T COG2607 274 IRDLAG 279 (287)
T ss_pred HHHHHh
Confidence 766553
No 203
>KOG0735|consensus
Probab=99.23 E-value=2.3e-10 Score=116.66 Aligned_cols=177 Identities=21% Similarity=0.226 Sum_probs=114.8
Q ss_pred CCcccccccHHHHHHHHHHHhc----------CC--CC-eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCc
Q psy12150 42 KTIDDVIEQQEVVSVLKKCLSG----------AD--LP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (456)
Q Consensus 42 ~~~~~ivg~~~~~~~l~~~l~~----------~~--~~-~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~ 108 (456)
-.|+++-|..++++.+.+.+.- -. .+ ++|+|||||||||.+|-+++... +.+++.+.+.+.-
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~-----~~~fisvKGPElL 738 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS-----NLRFISVKGPELL 738 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-----CeeEEEecCHHHH
Confidence 4689999999888888877641 11 22 29999999999999999999874 4466665443310
Q ss_pred --ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH-----------HHHHHHHHHHhc--cCcceEEEE
Q psy12150 109 --GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA-----------AQAALRRTMEKE--TKSTRFCLI 173 (456)
Q Consensus 109 --~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~-----------~~~~Ll~~le~~--~~~~~lIl~ 173 (456)
-.+...+.+++....+ ...+|| |+|+||+|.+.+. ..+.|+.-|+.. -..+.++.+
T Consensus 739 ~KyIGaSEq~vR~lF~rA-----~~a~PC----iLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aa 809 (952)
T KOG0735|consen 739 SKYIGASEQNVRDLFERA-----QSAKPC----ILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAA 809 (952)
T ss_pred HHHhcccHHHHHHHHHHh-----hccCCe----EEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEe
Confidence 0111122333333332 234677 9999999998642 345555555422 233444444
Q ss_pred ecCcccccccccCCce---EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Q psy12150 174 CNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR 233 (456)
Q Consensus 174 ~~~~~kl~~~l~~r~~---~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr 233 (456)
+.++.-+.++|.+.+. .+.++.|++.+..++++.....-.+ -++-.++.++..+.|.-.
T Consensus 810 TsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-~~~vdl~~~a~~T~g~tg 871 (952)
T KOG0735|consen 810 TSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-DTDVDLECLAQKTDGFTG 871 (952)
T ss_pred cCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-ccccchHHHhhhcCCCch
Confidence 4566677888887765 6888999999999999877653322 245567778888766433
No 204
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.22 E-value=4.8e-10 Score=116.04 Aligned_cols=213 Identities=16% Similarity=0.181 Sum_probs=138.9
Q ss_pred CcccccccHHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHH
Q psy12150 43 TIDDVIEQQEVVSVLKKCLSGAD--LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120 (456)
Q Consensus 43 ~~~~ivg~~~~~~~l~~~l~~~~--~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~ 120 (456)
.+.+++|....+..+.+.+.... ..+++++|++||||+++|++++..... ...+++.+||..... ..+...+...
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~--~~~~~i~i~c~~~~~-~~~~~~lfg~ 212 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR--AKAPFIALNMAAIPK-DLIESELFGH 212 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCC--CCCCeEeeeCCCCCH-HHHHHHhcCC
Confidence 35678898877776666654322 224999999999999999999987533 234788999987422 2222222110
Q ss_pred HHhhccCCCC--CCC-CCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc-------cc
Q psy12150 121 AQQTASGFNQ--DGK-PCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------SC 179 (456)
Q Consensus 121 ~~~~~~~~~~--~~~-~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~-------~k 179 (456)
....+.+... .+. ..+....+||||++.|+...|..|++++++.. .++++|++++.. ..
T Consensus 213 ~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~ 292 (469)
T PRK10923 213 EKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGK 292 (469)
T ss_pred CCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCC
Confidence 0000000000 000 01234489999999999999999999998642 234777777642 23
Q ss_pred ccccccCCce--EEEecCCCH--HHHHHHHHHHH----HHcCC---CCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhhC
Q psy12150 180 IIQPLTSRCS--KFRFKPLAE--NTMLTRLQYIC----EQESV---MCDFKALETLVET-SGGDMRRAITCLQSCARLKG 247 (456)
Q Consensus 180 l~~~l~~r~~--~i~f~~~~~--~el~~~l~~~~----~~~~~---~i~~~~l~~L~~~-s~gdlr~~~~~L~~~~~~~~ 247 (456)
+.+.|..|+. .+.++|+.+ +++..++...+ .+.+. .++++++..|..+ .+||+|++.+.++.++..+.
T Consensus 293 ~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~ 372 (469)
T PRK10923 293 FREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAA 372 (469)
T ss_pred chHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 4455666654 666677654 45554444443 33333 4899999999886 49999999999999988777
Q ss_pred CCCCCHHHHHH
Q psy12150 248 GEGIVNEDVLE 258 (456)
Q Consensus 248 ~~~It~~~v~~ 258 (456)
+..|+.+++..
T Consensus 373 ~~~i~~~~l~~ 383 (469)
T PRK10923 373 GQEVLIQDLPG 383 (469)
T ss_pred CCcccHHHCcH
Confidence 78899888753
No 205
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.21 E-value=6.6e-10 Score=118.21 Aligned_cols=214 Identities=15% Similarity=0.099 Sum_probs=131.7
Q ss_pred cccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcC-----------C-------------------
Q psy12150 44 IDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-----------D------------------- 93 (456)
Q Consensus 44 ~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~-----------~------------------- 93 (456)
|.+|+||+.++..+.-.+-.....++||+|++|+|||++++++++.+-. .
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~ 82 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSE 82 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccc
Confidence 7899999999998888877766667999999999999999999988620 0
Q ss_pred ccccceEEeeCCCC----cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc----
Q psy12150 94 MYRERILELNASDD----RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET---- 165 (456)
Q Consensus 94 ~~~~~~~e~n~~~~----~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~---- 165 (456)
....+++.+.++.. .+..++...+. .........--..++..+++|||++.+....++.|+..|++..
T Consensus 83 ~~~~pfv~~p~~~t~~~l~G~~d~~~~l~----~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~ 158 (633)
T TIGR02442 83 QRPVPFVNLPLGATEDRVVGSLDIERALR----EGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVE 158 (633)
T ss_pred cCCCCeeeCCCCCcHHHcCCcccHHHHhh----cCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEE
Confidence 00123444333211 01111111111 0000000000001355699999999999999999999998642
Q ss_pred ---------CcceEEEEecCc-ccccccccCCce-EEEecCCC-HHHHHHHHHHHH------------------------
Q psy12150 166 ---------KSTRFCLICNYV-SCIIQPLTSRCS-KFRFKPLA-ENTMLTRLQYIC------------------------ 209 (456)
Q Consensus 166 ---------~~~~lIl~~~~~-~kl~~~l~~r~~-~i~f~~~~-~~el~~~l~~~~------------------------ 209 (456)
..+.+|.+.|.. ..+.++|..|+. .+.+..+. .++..+++....
T Consensus 159 r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i 238 (633)
T TIGR02442 159 REGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRI 238 (633)
T ss_pred ECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHH
Confidence 234555555532 346677888885 45555554 233333332210
Q ss_pred -----HHcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHH---hhCCCCCCHHHHHHHhC
Q psy12150 210 -----EQESVMCDFKALETLVETS---GG-DMRRAITCLQSCAR---LKGGEGIVNEDVLEVTG 261 (456)
Q Consensus 210 -----~~~~~~i~~~~l~~L~~~s---~g-dlr~~~~~L~~~~~---~~~~~~It~~~v~~~~~ 261 (456)
....+.++++.++.|+..+ +- .+|..+..++-+.. +.+...|+.+||..++.
T Consensus 239 ~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~ 302 (633)
T TIGR02442 239 ARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAE 302 (633)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 0124678999988888765 22 46777766655433 33788999999987654
No 206
>PRK15115 response regulator GlrR; Provisional
Probab=99.18 E-value=1.8e-09 Score=110.98 Aligned_cols=212 Identities=17% Similarity=0.192 Sum_probs=131.2
Q ss_pred cccccHHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHh
Q psy12150 46 DVIEQQEVVSVLKKCLSG--ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQ 123 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~~--~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~ 123 (456)
.++|....+..+.+.+.. ....+++++|++|+||+++|+.+++.... ....++.+||.... ...+...+......
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r--~~~~f~~i~c~~~~-~~~~~~~lfg~~~~ 211 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPR--ASKPFIAINCGALP-EQLLESELFGHARG 211 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCC--CCCCeEEEeCCCCC-HHHHHHHhcCCCcC
Confidence 466665555444443322 12234999999999999999999987543 23478899988742 22222221111101
Q ss_pred hccCCC--CCCCC-CCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc-------ccccc
Q psy12150 124 TASGFN--QDGKP-CPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------SCIIQ 182 (456)
Q Consensus 124 ~~~~~~--~~~~~-~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~-------~kl~~ 182 (456)
.+.+.. ..+.. .+...+|||||++.|+...|..|++++++.. ..+++|++++.. ..+.+
T Consensus 212 ~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~ 291 (444)
T PRK15115 212 AFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFRE 291 (444)
T ss_pred CCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccH
Confidence 100000 00000 1234599999999999999999999998643 145677776632 12223
Q ss_pred cccCCce--EEEecCCCH--HHHHHHHHHH----HHHcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhCCCC
Q psy12150 183 PLTSRCS--KFRFKPLAE--NTMLTRLQYI----CEQES---VMCDFKALETLVETS-GGDMRRAITCLQSCARLKGGEG 250 (456)
Q Consensus 183 ~l~~r~~--~i~f~~~~~--~el~~~l~~~----~~~~~---~~i~~~~l~~L~~~s-~gdlr~~~~~L~~~~~~~~~~~ 250 (456)
.+..+.. .++++|+.+ +++..++... +.+.+ ..+++++++.|..+. +||+|++.+.++.++..+.+..
T Consensus 292 ~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~~~~ 371 (444)
T PRK15115 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPV 371 (444)
T ss_pred HHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCc
Confidence 3334433 455566543 3454443333 33333 248999999999987 9999999999999888777778
Q ss_pred CCHHHHHHHh
Q psy12150 251 IVNEDVLEVT 260 (456)
Q Consensus 251 It~~~v~~~~ 260 (456)
|+.+++...+
T Consensus 372 i~~~~l~~~~ 381 (444)
T PRK15115 372 ISDALVEQAL 381 (444)
T ss_pred cChhhhhhhh
Confidence 9988876433
No 207
>KOG0744|consensus
Probab=99.17 E-value=6.5e-10 Score=103.94 Aligned_cols=156 Identities=21% Similarity=0.271 Sum_probs=101.4
Q ss_pred cccccccHHHHHHHHHHHh-------cCCC-----Ce--EEEECCCCCcHHHHHHHHHHHhcC----CccccceEEeeCC
Q psy12150 44 IDDVIEQQEVVSVLKKCLS-------GADL-----PH--FLFYGPPGTGKTSTMIAACHQLFG----DMYRERILELNAS 105 (456)
Q Consensus 44 ~~~ivg~~~~~~~l~~~l~-------~~~~-----~~--~Ll~G~~G~GKT~~a~~l~~~l~~----~~~~~~~~e~n~~ 105 (456)
|+.++-....++++..+.. .+.. .+ +|+|||||||||++.+++|+.+.- .......+|+|+.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 5555655666666666542 1111 12 899999999999999999998852 3344578899887
Q ss_pred CCc---------ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH---------------HHHHHHHHH
Q psy12150 106 DDR---------GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA---------------AQAALRRTM 161 (456)
Q Consensus 106 ~~~---------~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~---------------~~~~Ll~~l 161 (456)
... .+..+.+++.++.... ...-.|+|||++.+... ..++|+.-|
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~-----------~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQl 289 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDR-----------GNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQL 289 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCC-----------CcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHH
Confidence 521 1222334444443321 13347999999988542 245566555
Q ss_pred Hhc--cCcceEEEEecCcccccccccCCce-EEEecCCCHHHHHHHHHHHHH
Q psy12150 162 EKE--TKSTRFCLICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICE 210 (456)
Q Consensus 162 e~~--~~~~~lIl~~~~~~kl~~~l~~r~~-~i~f~~~~~~el~~~l~~~~~ 210 (456)
++- .+++.++.++|-...++.++..|.. +....+|+...+.++++.-..
T Consensus 290 DrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 290 DRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred HHhccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHH
Confidence 532 3455555555566888999999987 677789999998888876654
No 208
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.16 E-value=1.2e-09 Score=112.93 Aligned_cols=213 Identities=17% Similarity=0.191 Sum_probs=139.4
Q ss_pred ccccccHHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHH
Q psy12150 45 DDVIEQQEVVSVLKKCLSG--ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQ 122 (456)
Q Consensus 45 ~~ivg~~~~~~~l~~~l~~--~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~ 122 (456)
..++|.......+.+.+.. +...++++.|++|+||+++++++++..... ...++.+||.... .+.+...+.....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~--~~~~~~~~c~~~~-~~~~~~~lfg~~~ 210 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRA--NGPFIALNMAAIP-KDLIESELFGHEK 210 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCC--CCCeEEEeCCCCC-HHHHHHHhcCCCC
Confidence 4577776666665555432 222349999999999999999999865432 3478888988742 2222222211000
Q ss_pred hhccCCCC--CCC-CCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc-------cccc
Q psy12150 123 QTASGFNQ--DGK-PCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------SCII 181 (456)
Q Consensus 123 ~~~~~~~~--~~~-~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~-------~kl~ 181 (456)
..+.+... .+. ..++..+|+|||++.|+.+.|..|++++++.. ..+.+|++++.. ..+.
T Consensus 211 ~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~ 290 (463)
T TIGR01818 211 GAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFR 290 (463)
T ss_pred CCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcH
Confidence 00000000 000 00234589999999999999999999998642 135677777642 1233
Q ss_pred ccccCCce--EEEecCCC--HHHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhCCC
Q psy12150 182 QPLTSRCS--KFRFKPLA--ENTMLTRLQYICE----QES---VMCDFKALETLVETS-GGDMRRAITCLQSCARLKGGE 249 (456)
Q Consensus 182 ~~l~~r~~--~i~f~~~~--~~el~~~l~~~~~----~~~---~~i~~~~l~~L~~~s-~gdlr~~~~~L~~~~~~~~~~ 249 (456)
+.|..|.. .++++|+. .+++..++...++ +.+ ..+++++++.|..+. +||+|++.+.++.++..+.+.
T Consensus 291 ~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~~~ 370 (463)
T TIGR01818 291 EDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASGD 370 (463)
T ss_pred HHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCC
Confidence 35555544 67788887 5677766655443 333 468999999999874 999999999999999887778
Q ss_pred CCCHHHHHHHh
Q psy12150 250 GIVNEDVLEVT 260 (456)
Q Consensus 250 ~It~~~v~~~~ 260 (456)
.|+.+++...+
T Consensus 371 ~i~~~~l~~~~ 381 (463)
T TIGR01818 371 EVLVSDLPAEL 381 (463)
T ss_pred cccHHhchHHH
Confidence 89998876443
No 209
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.15 E-value=1.1e-09 Score=109.37 Aligned_cols=188 Identities=18% Similarity=0.185 Sum_probs=113.6
Q ss_pred cccccHHHHHHHHHHHh-------c---CC--------CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC
Q psy12150 46 DVIEQQEVVSVLKKCLS-------G---AD--------LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~-------~---~~--------~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~ 107 (456)
.++||+++++.+..++. . .. ..++||+||||+|||++++++++.+.. ++..+++...
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~-----pf~~~da~~L 152 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNV-----PFAIADATTL 152 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCC-----CeEEechhhc
Confidence 46899999988866651 1 11 135999999999999999999988743 3444444332
Q ss_pred cC----hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH--------------HHHHHHHHHHHhcc----
Q psy12150 108 RG----IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------------AAQAALRRTMEKET---- 165 (456)
Q Consensus 108 ~~----~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~--------------~~~~~Ll~~le~~~---- 165 (456)
.. ..+....+........... .. +...+|+|||+|.+.. ..|+.|++.|+...
T Consensus 153 ~~~gyvG~d~e~~L~~~~~~~~~~l-~~----a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~ 227 (413)
T TIGR00382 153 TEAGYVGEDVENILLKLLQAADYDV-EK----AQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVP 227 (413)
T ss_pred cccccccccHHHHHHHHHHhCcccH-Hh----cccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecc
Confidence 11 0112222322222111100 00 1223999999999976 57899999996311
Q ss_pred ---------CcceEEEEecC-----------------c------------c---------------------cccccccC
Q psy12150 166 ---------KSTRFCLICNY-----------------V------------S---------------------CIIQPLTS 186 (456)
Q Consensus 166 ---------~~~~lIl~~~~-----------------~------------~---------------------kl~~~l~~ 186 (456)
.++++|.|+|- + . .+.|.|..
T Consensus 228 ~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg 307 (413)
T TIGR00382 228 PQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG 307 (413)
T ss_pred cCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC
Confidence 12344444332 0 0 02355677
Q ss_pred Cce-EEEecCCCHHHHHHHHHHH----HHH-------cCC--CCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Q psy12150 187 RCS-KFRFKPLAENTMLTRLQYI----CEQ-------ESV--MCDFKALETLVETS---GGDMRRAITCLQSCA 243 (456)
Q Consensus 187 r~~-~i~f~~~~~~el~~~l~~~----~~~-------~~~--~i~~~~l~~L~~~s---~gdlr~~~~~L~~~~ 243 (456)
|.. ++.|.+++.+++.+++... +++ .|+ .+++++++.|++.+ ..-.|.+.+.+++..
T Consensus 308 Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l 381 (413)
T TIGR00382 308 RLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLL 381 (413)
T ss_pred CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhh
Confidence 775 7889999999999988652 221 243 57899999999874 223555555555543
No 210
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.14 E-value=1.2e-09 Score=107.73 Aligned_cols=108 Identities=21% Similarity=0.242 Sum_probs=78.2
Q ss_pred CcEEEEEcCCCCccH------------HHHHHHHHHHHhcc----------CcceEEEEec----CcccccccccCCce-
Q psy12150 137 PFKIVILDEADSMTH------------AAQAALRRTMEKET----------KSTRFCLICN----YVSCIIQPLTSRCS- 189 (456)
Q Consensus 137 ~~~iviIDE~d~l~~------------~~~~~Ll~~le~~~----------~~~~lIl~~~----~~~kl~~~l~~r~~- 189 (456)
.+.||||||+|.+.. ..|..|+.++|... .+..||+++. .+..+.|.|..|+.
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 326 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPI 326 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 567999999999863 25888999998522 2334544432 35678899999987
Q ss_pred EEEecCCCHHHHHHHHH----HH-------HHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH
Q psy12150 190 KFRFKPLAENTMLTRLQ----YI-------CEQESV--MCDFKALETLVETS--------GGDMRRAITCLQSCAR 244 (456)
Q Consensus 190 ~i~f~~~~~~el~~~l~----~~-------~~~~~~--~i~~~~l~~L~~~s--------~gdlr~~~~~L~~~~~ 244 (456)
++.+.+++.+++.++|. .. ++.+|+ .|+++++..|++.+ +--.|.+...++++..
T Consensus 327 ~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~ 402 (441)
T TIGR00390 327 RVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLE 402 (441)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence 89999999999998882 22 234564 47899999999865 3346777777777654
No 211
>KOG0732|consensus
Probab=99.13 E-value=1.1e-09 Score=117.72 Aligned_cols=192 Identities=18% Similarity=0.180 Sum_probs=135.8
Q ss_pred CCCcccccccHHHHHHHHHHHh------------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCC-
Q psy12150 41 PKTIDDVIEQQEVVSVLKKCLS------------GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD- 106 (456)
Q Consensus 41 P~~~~~ivg~~~~~~~l~~~l~------------~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~- 106 (456)
-.+|+++-|.+.+++.|++.+- +-.+|. +|+|||||||||..+++++..+....-++.+..-.+.+
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ 340 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC 340 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh
Confidence 3469999999999999988762 122333 99999999999999999999887654444443333333
Q ss_pred -CcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH-----------HHHHHHHHHHhc--cCcceEEE
Q psy12150 107 -DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA-----------AQAALRRTMEKE--TKSTRFCL 172 (456)
Q Consensus 107 -~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~-----------~~~~Ll~~le~~--~~~~~lIl 172 (456)
..+++.....+.-+...+... .| .|+++||+|.|.+- ....|+..|..- .+.+++|-
T Consensus 341 lskwvgEaERqlrllFeeA~k~-----qP----SIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvig 411 (1080)
T KOG0732|consen 341 LSKWVGEAERQLRLLFEEAQKT-----QP----SIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIG 411 (1080)
T ss_pred hccccCcHHHHHHHHHHHHhcc-----Cc----eEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEc
Confidence 122333334444333333221 22 39999999988542 123456566533 24577777
Q ss_pred EecCcccccccccCCce---EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q psy12150 173 ICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241 (456)
Q Consensus 173 ~~~~~~kl~~~l~~r~~---~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~ 241 (456)
++|++..+.+++++.+. .+.|+-++.+....++.-+-.+..-.+....+..|++.+.|..+.-+..|-.
T Consensus 412 ATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCT 483 (1080)
T KOG0732|consen 412 ATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCT 483 (1080)
T ss_pred ccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHH
Confidence 88899999999987765 7999999999999998888777778899999999999998877776666543
No 212
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.11 E-value=2.3e-09 Score=113.01 Aligned_cols=127 Identities=14% Similarity=0.141 Sum_probs=88.2
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHhcc---------------------CcceEEEEecCc--ccccccccCCce---
Q psy12150 136 PPFKIVILDEADSMTHAAQAALRRTMEKET---------------------KSTRFCLICNYV--SCIIQPLTSRCS--- 189 (456)
Q Consensus 136 ~~~~iviIDE~d~l~~~~~~~Ll~~le~~~---------------------~~~~lIl~~~~~--~kl~~~l~~r~~--- 189 (456)
++..+++|||++.|....|..|++.|++.. -.+++|++++.. ..+.++|.+|+.
T Consensus 216 AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~ 295 (608)
T TIGR00764 216 AHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYG 295 (608)
T ss_pred CCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCe
Confidence 455799999999999999999999996431 134577777643 567788888876
Q ss_pred -EEEecC---CCHHH---HHHHHHHHHHHcC--CCCCHHHHHHHHHHc----------CCCHHHHHHHHHHHHHhh---C
Q psy12150 190 -KFRFKP---LAENT---MLTRLQYICEQES--VMCDFKALETLVETS----------GGDMRRAITCLQSCARLK---G 247 (456)
Q Consensus 190 -~i~f~~---~~~~e---l~~~l~~~~~~~~--~~i~~~~l~~L~~~s----------~gdlr~~~~~L~~~~~~~---~ 247 (456)
.+.|.. .+.+. +..++.+.+++.| ..++++++..|++.. ..+.|.+-+.++.+...+ +
T Consensus 296 v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~ 375 (608)
T TIGR00764 296 YEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSG 375 (608)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcC
Confidence 345533 23433 4555666666663 358999999988532 245788888888775444 4
Q ss_pred CCCCCHHHHHHHhCC
Q psy12150 248 GEGIVNEDVLEVTGV 262 (456)
Q Consensus 248 ~~~It~~~v~~~~~~ 262 (456)
...|+.++|.+++..
T Consensus 376 ~~~I~~ehV~~Ai~~ 390 (608)
T TIGR00764 376 KVYVTAEHVLKAKKL 390 (608)
T ss_pred CceecHHHHHHHHHH
Confidence 568999999887653
No 213
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.11 E-value=3.5e-09 Score=109.27 Aligned_cols=212 Identities=17% Similarity=0.188 Sum_probs=132.7
Q ss_pred cccccccHHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHH
Q psy12150 44 IDDVIEQQEVVSVLKKCLSGAD--LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFA 121 (456)
Q Consensus 44 ~~~ivg~~~~~~~l~~~l~~~~--~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~ 121 (456)
+..++|....+..+.+.+.... ..+++++|++|+||+++++.++..... ...+++.+||..... ..+...+....
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~--~~~~~~~i~c~~~~~-~~~~~~lfg~~ 218 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRR--AKGPFIKVNCAALPE-SLLESELFGHE 218 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCC--CCCCeEEEECCCCCH-HHHHHHhcCCC
Confidence 3457777666655555543322 234999999999999999999886433 234788899887432 22222111100
Q ss_pred HhhccCCC--CCCC-CCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc-------ccc
Q psy12150 122 QQTASGFN--QDGK-PCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------SCI 180 (456)
Q Consensus 122 ~~~~~~~~--~~~~-~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~-------~kl 180 (456)
...+.+.. ..+. ..++..+|||||++.|+...|..|++++++.. .++++|++++.. ..+
T Consensus 219 ~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~ 298 (457)
T PRK11361 219 KGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTF 298 (457)
T ss_pred CCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCc
Confidence 00000000 0000 01345599999999999999999999997532 235777777643 123
Q ss_pred cccccCCce--EEEecCCCH--HHHHHHH----HHHHHHcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhCC
Q psy12150 181 IQPLTSRCS--KFRFKPLAE--NTMLTRL----QYICEQES---VMCDFKALETLVETS-GGDMRRAITCLQSCARLKGG 248 (456)
Q Consensus 181 ~~~l~~r~~--~i~f~~~~~--~el~~~l----~~~~~~~~---~~i~~~~l~~L~~~s-~gdlr~~~~~L~~~~~~~~~ 248 (456)
.+.+..+.. .+.++|+.+ +++..++ .....+.+ ..+++++++.|..+. +||+|++.+.++.++..+.+
T Consensus 299 ~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~~ 378 (457)
T PRK11361 299 REDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSG 378 (457)
T ss_pred hHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCCC
Confidence 333444433 556666652 4444333 33333323 358999999998865 99999999999999887777
Q ss_pred CCCCHHHHHH
Q psy12150 249 EGIVNEDVLE 258 (456)
Q Consensus 249 ~~It~~~v~~ 258 (456)
..|+.+++..
T Consensus 379 ~~i~~~~l~~ 388 (457)
T PRK11361 379 PIIFSEDLPP 388 (457)
T ss_pred CcccHHHChH
Confidence 7898888754
No 214
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.09 E-value=3.5e-09 Score=100.06 Aligned_cols=217 Identities=15% Similarity=0.083 Sum_probs=135.7
Q ss_pred ccccHHH---HHHHHHHH---hcCCCCeEEEECCCCCcHHHHHHHHHHHhcC----CccccceEEeeCCCCcChHHHHHH
Q psy12150 47 VIEQQEV---VSVLKKCL---SGADLPHFLFYGPPGTGKTSTMIAACHQLFG----DMYRERILELNASDDRGIQVIRDK 116 (456)
Q Consensus 47 ivg~~~~---~~~l~~~l---~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~----~~~~~~~~e~n~~~~~~~~~i~~~ 116 (456)
.+|.+.. ++.|...+ +..++|+++|+|++|.|||++++.+.+.... +....+++.+.+....+...+...
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~ 115 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSA 115 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHH
Confidence 4665544 34444544 4567788999999999999999999986532 112346677766665555555555
Q ss_pred HHHHHHhhccCCCCCCCC---------CCCcEEEEEcCCCCccH---HHHHHH---HHHHHhccCcceEEEEecCc---c
Q psy12150 117 VKTFAQQTASGFNQDGKP---------CPPFKIVILDEADSMTH---AAQAAL---RRTMEKETKSTRFCLICNYV---S 178 (456)
Q Consensus 117 l~~~~~~~~~~~~~~~~~---------~~~~~iviIDE~d~l~~---~~~~~L---l~~le~~~~~~~lIl~~~~~---~ 178 (456)
+-.....+.......... .-+-+++||||++++.. ..|..+ +++|.+.-.-+++.+.+... -
T Consensus 116 IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al 195 (302)
T PF05621_consen 116 ILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRAL 195 (302)
T ss_pred HHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHh
Confidence 444433332221110000 01456999999999732 233333 34454444444444433322 2
Q ss_pred cccccccCCceEEEecCCCHH-HHHHHHHHHHHHc----CCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh---CCC
Q psy12150 179 CIIQPLTSRCSKFRFKPLAEN-TMLTRLQYICEQE----SVM-CDFKALETLVETSGGDMRRAITCLQSCARLK---GGE 249 (456)
Q Consensus 179 kl~~~l~~r~~~i~f~~~~~~-el~~~l~~~~~~~----~~~-i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~---~~~ 249 (456)
.-++++.+|+..+.+++...+ +....|...-..- .-. -+++....|...|+|.+..+.+.+..++..+ |.+
T Consensus 196 ~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~aA~~AI~sG~E 275 (302)
T PF05621_consen 196 RTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLNAAAIAAIRSGEE 275 (302)
T ss_pred ccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhcCCc
Confidence 345789999999999888754 4555554443321 112 3567778999999999999999999988877 678
Q ss_pred CCCHHHHHHHhCCC
Q psy12150 250 GIVNEDVLEVTGVI 263 (456)
Q Consensus 250 ~It~~~v~~~~~~~ 263 (456)
.||.+.+..+-=..
T Consensus 276 ~It~~~l~~~~~~~ 289 (302)
T PF05621_consen 276 RITREILDKIDWVP 289 (302)
T ss_pred eecHHHHhhCCCcC
Confidence 89999887754433
No 215
>KOG0735|consensus
Probab=99.09 E-value=1.6e-08 Score=103.56 Aligned_cols=269 Identities=16% Similarity=0.149 Sum_probs=169.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcC--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEE
Q psy12150 66 LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143 (456)
Q Consensus 66 ~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviI 143 (456)
.++++|+||+|+|||.+++++++.+..+ ....+..++|+...+ .+.++..+.......... .|+ +|++
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~-~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~-----~PS----iIvL 500 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKD-LIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWY-----APS----IIVL 500 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccc-cceEEEEEechhccchhHHHHHHHHHHHHHHHHhh-----CCc----EEEE
Confidence 3459999999999999999999998743 334555667776443 455666665554443322 222 9999
Q ss_pred cCCCCccHH----------HHHHHH----HHHH---hccCcceEEEEecCcccccccccCC--ce-EEEecCCCHHHHHH
Q psy12150 144 DEADSMTHA----------AQAALR----RTME---KETKSTRFCLICNYVSCIIQPLTSR--CS-KFRFKPLAENTMLT 203 (456)
Q Consensus 144 DE~d~l~~~----------~~~~Ll----~~le---~~~~~~~lIl~~~~~~kl~~~l~~r--~~-~i~f~~~~~~el~~ 203 (456)
|++|.+... ..+.+. +.+. +....+.+|++.+....+.+.|.+. ++ ++.+++|...+...
T Consensus 501 Ddld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~ 580 (952)
T KOG0735|consen 501 DDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKE 580 (952)
T ss_pred cchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHH
Confidence 999988541 111121 2222 2233456777777666666665444 33 78899999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhh-------CCCCCCHHHHHHHhCCCCHHHHHHHHcc-
Q psy12150 204 RLQYICEQESVMCDFKALETLVETSGG-DMRRAITCLQSCARLK-------GGEGIVNEDVLEVTGVIPKPWIEKLLKV- 274 (456)
Q Consensus 204 ~l~~~~~~~~~~i~~~~l~~L~~~s~g-dlr~~~~~L~~~~~~~-------~~~~It~~~v~~~~~~~~~~~i~~l~~~- 274 (456)
+|...+++.......+.++.++..++| +.+.+....+++..++ +.+.+|.+++.+.+....+..+..+-..
T Consensus 581 IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik~~k 660 (952)
T KOG0735|consen 581 ILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIKLVK 660 (952)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhccccc
Confidence 999999988777788889999999988 4556666666665443 2347888999888877766655544222
Q ss_pred ---------cchHHHHHHHHHHHHhccCHHHHHHHHHHHHH---HHhcCCHHHHHHH------------------HHHHH
Q psy12150 275 ---------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVM---LASSLSDKQKALF------------------KALET 324 (456)
Q Consensus 275 ---------~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~~---~~~~~~~~~~~l~------------------~~~~~ 324 (456)
+-..++...+.+.++-.-.--.|+.+...=+- +=..+.+-.+.++ +-+..
T Consensus 661 ~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~K 740 (952)
T KOG0735|consen 661 STGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSK 740 (952)
T ss_pred cCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHH
Confidence 44567777777776532221223322211000 0001111111111 45667
Q ss_pred HHhcchHHHHHHHHHHhhhh
Q psy12150 325 LVETSGGDMRRAITCLQSCA 344 (456)
Q Consensus 325 ~~~~~~gd~r~~~~~lq~~~ 344 (456)
.+..|....|.+++.-|++.
T Consensus 741 yIGaSEq~vR~lF~rA~~a~ 760 (952)
T KOG0735|consen 741 YIGASEQNVRDLFERAQSAK 760 (952)
T ss_pred HhcccHHHHHHHHHHhhccC
Confidence 77888888888888888774
No 216
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.07 E-value=2.3e-09 Score=105.76 Aligned_cols=108 Identities=22% Similarity=0.237 Sum_probs=78.2
Q ss_pred CcEEEEEcCCCCccH------------HHHHHHHHHHHhcc----------CcceEEEEec----CcccccccccCCce-
Q psy12150 137 PFKIVILDEADSMTH------------AAQAALRRTMEKET----------KSTRFCLICN----YVSCIIQPLTSRCS- 189 (456)
Q Consensus 137 ~~~iviIDE~d~l~~------------~~~~~Ll~~le~~~----------~~~~lIl~~~----~~~kl~~~l~~r~~- 189 (456)
...||||||+|.+.. ..|..|+.++|... .+..||+++. .+..++|.|..|+.
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI 328 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 567999999999853 25888999988522 2334444432 35678899999987
Q ss_pred EEEecCCCHHHHHHHHHH----HH-------HHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH
Q psy12150 190 KFRFKPLAENTMLTRLQY----IC-------EQESV--MCDFKALETLVETS--------GGDMRRAITCLQSCAR 244 (456)
Q Consensus 190 ~i~f~~~~~~el~~~l~~----~~-------~~~~~--~i~~~~l~~L~~~s--------~gdlr~~~~~L~~~~~ 244 (456)
++.+.+++.+++.++|.. .. +.+|+ .|++++++.|++.+ +--.|.+...++++..
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~ 404 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLE 404 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence 899999999999988832 33 33565 57899999999865 3346777777777654
No 217
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.07 E-value=4.6e-09 Score=99.54 Aligned_cols=207 Identities=19% Similarity=0.180 Sum_probs=138.2
Q ss_pred CCcccccccHHHHHHHHHHHhcCCC--CeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHH
Q psy12150 42 KTIDDVIEQQEVVSVLKKCLSGADL--PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119 (456)
Q Consensus 42 ~~~~~ivg~~~~~~~l~~~l~~~~~--~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~ 119 (456)
..|+.+++....++.+....++-.+ .++||+|+.||||..+|++++..-.. ...+++-+||..... +.....+.
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R--~~~pFlalNCA~lPe-~~aEsElF- 276 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPR--HSKPFLALNCASLPE-DAAESELF- 276 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCcc--cCCCeeEeecCCCch-hHhHHHHh-
Confidence 4688999988888777666554322 24999999999999999999876433 344788999986322 11111111
Q ss_pred HHHhhccCCCCCCCCC----CCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc-------
Q psy12150 120 FAQQTASGFNQDGKPC----PPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV------- 177 (456)
Q Consensus 120 ~~~~~~~~~~~~~~~~----~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~------- 177 (456)
.... ...++++ +....|++||+..|++.-|..|++++.+.+ .++++|+++...
T Consensus 277 --G~ap---g~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~ 351 (511)
T COG3283 277 --GHAP---GDEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQK 351 (511)
T ss_pred --cCCC---CCCCccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhc
Confidence 1111 0122221 455589999999999999999999998654 246677666432
Q ss_pred ccccccccCCceEEEe--cCCCH--H----HHHHHHHHHHHHcCC---CCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHh
Q psy12150 178 SCIIQPLTSRCSKFRF--KPLAE--N----TMLTRLQYICEQESV---MCDFKALETLVET-SGGDMRRAITCLQSCARL 245 (456)
Q Consensus 178 ~kl~~~l~~r~~~i~f--~~~~~--~----el~~~l~~~~~~~~~---~i~~~~l~~L~~~-s~gdlr~~~~~L~~~~~~ 245 (456)
.++-..+.-|..++.+ +|+.+ + -..-++++++.+-|+ +++++.+..|.++ ++||+|++-|.+-.++..
T Consensus 352 g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~ 431 (511)
T COG3283 352 GKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTL 431 (511)
T ss_pred CchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence 2233334444443333 33322 1 234456677776664 5788888888875 699999999999999888
Q ss_pred hCCCCCCHHHHH
Q psy12150 246 KGGEGIVNEDVL 257 (456)
Q Consensus 246 ~~~~~It~~~v~ 257 (456)
..+..++.+++.
T Consensus 432 ~Eg~~l~i~~i~ 443 (511)
T COG3283 432 LEGYELRIEDIL 443 (511)
T ss_pred hccCccchhhcc
Confidence 888888888875
No 218
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.05 E-value=5.1e-09 Score=110.13 Aligned_cols=126 Identities=16% Similarity=0.229 Sum_probs=84.7
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHhcc---------------------CcceEEEEecCc--ccccccccCCce---
Q psy12150 136 PPFKIVILDEADSMTHAAQAALRRTMEKET---------------------KSTRFCLICNYV--SCIIQPLTSRCS--- 189 (456)
Q Consensus 136 ~~~~iviIDE~d~l~~~~~~~Ll~~le~~~---------------------~~~~lIl~~~~~--~kl~~~l~~r~~--- 189 (456)
++..++|+||++.|....|..|++.|++.. -.+.+|++++.. ..+.+.|.+|+.
T Consensus 225 AnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~~ 304 (637)
T PRK13765 225 AHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGYG 304 (637)
T ss_pred CCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccCe
Confidence 445799999999999999999999986432 134677777653 345667777763
Q ss_pred -EEEecC---CCHHHHHHHHHHHHHH---c--CCCCCHHHHHHHHHHc---CCC-------HHHHHHHHHHHHHhh---C
Q psy12150 190 -KFRFKP---LAENTMLTRLQYICEQ---E--SVMCDFKALETLVETS---GGD-------MRRAITCLQSCARLK---G 247 (456)
Q Consensus 190 -~i~f~~---~~~~el~~~l~~~~~~---~--~~~i~~~~l~~L~~~s---~gd-------lr~~~~~L~~~~~~~---~ 247 (456)
.++|.. -+.+....+++.+++. . -..++++++..|++.. .|+ .|.+.+.+..+..++ +
T Consensus 305 v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~ 384 (637)
T PRK13765 305 YEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEG 384 (637)
T ss_pred EEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhc
Confidence 466654 3356666666655543 2 2368999999988743 232 566666666655444 4
Q ss_pred CCCCCHHHHHHHhC
Q psy12150 248 GEGIVNEDVLEVTG 261 (456)
Q Consensus 248 ~~~It~~~v~~~~~ 261 (456)
.+.|+.++|.++..
T Consensus 385 ~~~i~~~~v~~a~~ 398 (637)
T PRK13765 385 AELTTAEHVLEAKK 398 (637)
T ss_pred cceecHHHHHHHHH
Confidence 56788888877653
No 219
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.04 E-value=2.7e-09 Score=102.64 Aligned_cols=165 Identities=15% Similarity=0.052 Sum_probs=103.5
Q ss_pred ccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHH-
Q psy12150 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK- 116 (456)
Q Consensus 38 ky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~- 116 (456)
.|.|..-.+.+..+.....+..++..+ .+++|.|+||||||++++.+++.++. +++.+++.......++...
T Consensus 38 ~~~p~~d~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~-----~~~rV~~~~~l~~~DliG~~ 110 (327)
T TIGR01650 38 EHVPDIDPAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNW-----PCVRVNLDSHVSRIDLVGKD 110 (327)
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCC-----CeEEEEecCCCChhhcCCCc
Confidence 444554445666667777777777543 36999999999999999999999864 4455555443222211110
Q ss_pred ---HHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHh--------------ccCcceEEEEecCc--
Q psy12150 117 ---VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEK--------------ETKSTRFCLICNYV-- 177 (456)
Q Consensus 117 ---l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~--------------~~~~~~lIl~~~~~-- 177 (456)
++.-.....+..++-........++++||++...++.+..|...|+. +.+..++|.+.|..
T Consensus 111 ~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~ 190 (327)
T TIGR01650 111 AIVLKDGKQITEFRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGL 190 (327)
T ss_pred eeeccCCcceeEEecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCc
Confidence 00000000000000000001234799999999999999998888873 12345567777753
Q ss_pred ----------ccccccccCCce-EEEecCCCHHHHHHHHHHHH
Q psy12150 178 ----------SCIIQPLTSRCS-KFRFKPLAENTMLTRLQYIC 209 (456)
Q Consensus 178 ----------~kl~~~l~~r~~-~i~f~~~~~~el~~~l~~~~ 209 (456)
..+..++..|+. ++.+..++.++-.+++...+
T Consensus 191 Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 191 GDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred CCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 235678899997 56899999999999887654
No 220
>KOG0651|consensus
Probab=99.01 E-value=1.9e-09 Score=100.41 Aligned_cols=174 Identities=21% Similarity=0.258 Sum_probs=105.3
Q ss_pred CcccccccHHHHHHHHHHHh------------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC--
Q psy12150 43 TIDDVIEQQEVVSVLKKCLS------------GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD-- 107 (456)
Q Consensus 43 ~~~~ivg~~~~~~~l~~~l~------------~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~-- 107 (456)
+|+++-|.-..+..+.+.+. +-.+|. ++||||||+|||.++++++..+..+ ++-+.++..
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~n-----fl~v~ss~lv~ 204 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVN-----FLKVVSSALVD 204 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCc-----eEEeeHhhhhh
Confidence 78888888888888887763 223343 9999999999999999999998653 444333321
Q ss_pred cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH-----------HHHHHHHHHHHhc-----cCcceEE
Q psy12150 108 RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEKE-----TKSTRFC 171 (456)
Q Consensus 108 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~-----------~~~~~Ll~~le~~-----~~~~~lI 171 (456)
...++....+++....+... .|| ++|+||+|.... ..+..|.++++.- ...+.+|
T Consensus 205 kyiGEsaRlIRemf~yA~~~-----~pc----iifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~I 275 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREV-----IPC----IIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTI 275 (388)
T ss_pred hhcccHHHHHHHHHHHHhhh-----Cce----EEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEE
Confidence 11122223333332222111 234 999999998742 2355666665432 2457799
Q ss_pred EEecCcccccccccCCce---EEEecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHcCC
Q psy12150 172 LICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQ--ESVMCDFKALETLVETSGG 230 (456)
Q Consensus 172 l~~~~~~kl~~~l~~r~~---~i~f~~~~~~el~~~l~~~~~~--~~~~i~~~~l~~L~~~s~g 230 (456)
+++|++..++++|.+-+. .++.+-|++.....+++-.... ..-.++.+++-.+.+-.+|
T Consensus 276 matNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~g 339 (388)
T KOG0651|consen 276 MATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNG 339 (388)
T ss_pred EecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccCh
Confidence 999999999999987665 4555544444433333322221 1124566665555554444
No 221
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.00 E-value=1.5e-08 Score=103.99 Aligned_cols=211 Identities=15% Similarity=0.165 Sum_probs=130.3
Q ss_pred cccccHHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHh
Q psy12150 46 DVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQ 123 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~~~--~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~ 123 (456)
.++|.......+.+.+..- ...+++++|++|+||++++++++..... ...+++.+||.... ...+...+......
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~--~~~~~i~~~c~~~~-~~~~~~~lfg~~~~ 216 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSAR--SEKPLVTLNCAALN-ESLLESELFGHEKG 216 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCC--CCCCeeeeeCCCCC-HHHHHHHhcCCCCC
Confidence 3566555555544443321 2234999999999999999999986433 23478999998643 23232222111100
Q ss_pred hccCCC--CCCC-CCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc-------ccccc
Q psy12150 124 TASGFN--QDGK-PCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------SCIIQ 182 (456)
Q Consensus 124 ~~~~~~--~~~~-~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~-------~kl~~ 182 (456)
.+.+.. ..|. ..++..++||||++.|+...|..|++++++.. ..+++|++++.. ..+.+
T Consensus 217 ~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~ 296 (441)
T PRK10365 217 AFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQ 296 (441)
T ss_pred CcCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchH
Confidence 000000 0000 01344589999999999999999999998643 134567666532 11223
Q ss_pred cccCCce--EEEecCCCH--HHHHHHHHHHH----HHcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhCCCC
Q psy12150 183 PLTSRCS--KFRFKPLAE--NTMLTRLQYIC----EQES---VMCDFKALETLVETS-GGDMRRAITCLQSCARLKGGEG 250 (456)
Q Consensus 183 ~l~~r~~--~i~f~~~~~--~el~~~l~~~~----~~~~---~~i~~~~l~~L~~~s-~gdlr~~~~~L~~~~~~~~~~~ 250 (456)
.|..+.. .+.++|+.+ +++..++...+ .+.+ ..+++++++.|..+. +||+|++.+.++.++..+.+..
T Consensus 297 ~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~~~~~ 376 (441)
T PRK10365 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEY 376 (441)
T ss_pred HHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCc
Confidence 3334433 455566653 34444444433 3333 358999999999876 9999999999999887777778
Q ss_pred CCHHHHHHH
Q psy12150 251 IVNEDVLEV 259 (456)
Q Consensus 251 It~~~v~~~ 259 (456)
|+.+++...
T Consensus 377 i~~~~l~~~ 385 (441)
T PRK10365 377 ISERELPLA 385 (441)
T ss_pred cchHhCchh
Confidence 998887543
No 222
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.99 E-value=9.5e-09 Score=101.18 Aligned_cols=152 Identities=19% Similarity=0.132 Sum_probs=99.7
Q ss_pred ccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHH--
Q psy12150 45 DDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQ-- 122 (456)
Q Consensus 45 ~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~-- 122 (456)
..++|++..+..+..++..++ |++|-||||+|||++++.+++.++. +++.+++.......++.....-...
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l~~-----~~~~i~~t~~l~p~d~~G~~~~~~~~~ 96 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARALGL-----PFVRIQCTPDLLPSDLLGTYAYAALLL 96 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHhCC-----CeEEEecCCCCCHHHhcCchhHhhhhc
Confidence 347888888888777776654 6999999999999999999999863 6777777765554443322111111
Q ss_pred -hhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhc------------cCcceEEEEec-----Ccccccccc
Q psy12150 123 -QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE------------TKSTRFCLICN-----YVSCIIQPL 184 (456)
Q Consensus 123 -~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~------------~~~~~lIl~~~-----~~~kl~~~l 184 (456)
...+...+.....+.+.++++||++...+..++.|+..|++. +....++.+.| ..+.+.+++
T Consensus 97 ~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ 176 (329)
T COG0714 97 EPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEAL 176 (329)
T ss_pred cCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHH
Confidence 111111111111112249999999999999999999999862 12233444446 235578899
Q ss_pred cCCc-eEEEecCCCHHHHHH
Q psy12150 185 TSRC-SKFRFKPLAENTMLT 203 (456)
Q Consensus 185 ~~r~-~~i~f~~~~~~el~~ 203 (456)
.+|| ..+.+..|...+...
T Consensus 177 ldRf~~~~~v~yp~~~~e~~ 196 (329)
T COG0714 177 LDRFLLRIYVDYPDSEEEER 196 (329)
T ss_pred HhhEEEEEecCCCCchHHHH
Confidence 9999 678888884444333
No 223
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.99 E-value=4.5e-09 Score=92.75 Aligned_cols=124 Identities=17% Similarity=0.175 Sum_probs=76.0
Q ss_pred ccccHHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhh
Q psy12150 47 VIEQQEVVSVLKKCLSG--ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQT 124 (456)
Q Consensus 47 ivg~~~~~~~l~~~l~~--~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~ 124 (456)
++|.+..+..+.+.++. ....+++|+|++||||+.+|+++++.... ...+++.+||+... .+.+...+ ....
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r--~~~pfi~vnc~~~~-~~~~e~~L---FG~~ 74 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPR--KNGPFISVNCAALP-EELLESEL---FGHE 74 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTT--TTS-EEEEETTTS--HHHHHHHH---HEBC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhc--ccCCeEEEehhhhh-cchhhhhh---hccc
Confidence 46777777777666653 22345999999999999999999995432 23479999998742 22222221 1111
Q ss_pred ccCCCC--CCCCC----CCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecC
Q psy12150 125 ASGFNQ--DGKPC----PPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNY 176 (456)
Q Consensus 125 ~~~~~~--~~~~~----~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~ 176 (456)
...... ....+ ++..+++|||++.|+...|..|+++|++.. .++++|++++.
T Consensus 75 ~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 75 KGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp SSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 000000 00000 355699999999999999999999998532 35677777764
No 224
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.97 E-value=3.2e-10 Score=97.11 Aligned_cols=116 Identities=21% Similarity=0.183 Sum_probs=71.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d 147 (456)
+++|+||||||||++++.+++.+.. ++..++++.....+++..........................++++||++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin 75 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEIN 75 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcc
Confidence 4899999999999999999999833 56667777655555443221111000000000000001245699999999
Q ss_pred CccHHHHHHHHHHHHhcc-------------C------cceEEEEecCcc----cccccccCCc
Q psy12150 148 SMTHAAQAALRRTMEKET-------------K------STRFCLICNYVS----CIIQPLTSRC 188 (456)
Q Consensus 148 ~l~~~~~~~Ll~~le~~~-------------~------~~~lIl~~~~~~----kl~~~l~~r~ 188 (456)
...++.++.|+..+++.. . +.++|.++|... .+.+++++||
T Consensus 76 ~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 76 RAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp G--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred cCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 999999999999886421 1 267888888765 6777888875
No 225
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=7.9e-09 Score=109.06 Aligned_cols=201 Identities=18% Similarity=0.175 Sum_probs=140.0
Q ss_pred chhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccc-----cceEEeeCCCC--
Q psy12150 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYR-----ERILELNASDD-- 107 (456)
Q Consensus 35 w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~-----~~~~e~n~~~~-- 107 (456)
..+.-|-..++-++|+++.++++.+.+.+....|-+|.|+||+|||.++.-++..+..+..+ ..++.++....
T Consensus 160 lt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvA 239 (786)
T COG0542 160 LTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVA 239 (786)
T ss_pred hHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhc
Confidence 34444556788899999999999999988777778999999999999999999998764432 23444444431
Q ss_pred --cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH---------HHHHHHHHHHHhccCcceEEEEec-
Q psy12150 108 --RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH---------AAQAALRRTMEKETKSTRFCLICN- 175 (456)
Q Consensus 108 --~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~---------~~~~~Ll~~le~~~~~~~lIl~~~- 175 (456)
.-.+++.+.++......... +.-|+||||+|.+.+ ++.+.|...|.... ..+|.+|+
T Consensus 240 GakyRGeFEeRlk~vl~ev~~~---------~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe--L~~IGATT~ 308 (786)
T COG0542 240 GAKYRGEFEERLKAVLKEVEKS---------KNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE--LRCIGATTL 308 (786)
T ss_pred cccccCcHHHHHHHHHHHHhcC---------CCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC--eEEEEeccH
Confidence 11123334443333222111 233999999998843 23455666776544 44555554
Q ss_pred -Ccc---cccccccCCceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHHHH
Q psy12150 176 -YVS---CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ----ESVMCDFKALETLVETSGGD------MRRAITCLQS 241 (456)
Q Consensus 176 -~~~---kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~----~~~~i~~~~l~~L~~~s~gd------lr~~~~~L~~ 241 (456)
.+. .-.++|.+|++.|....|+.++...+|+....+ .++.++++++...+..+... +..++..++.
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDe 388 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDE 388 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHH
Confidence 222 346789999999999999999999999877654 57899999999988877533 4568888887
Q ss_pred HHHhh
Q psy12150 242 CARLK 246 (456)
Q Consensus 242 ~~~~~ 246 (456)
+++..
T Consensus 389 A~a~~ 393 (786)
T COG0542 389 AGARV 393 (786)
T ss_pred HHHHH
Confidence 76654
No 226
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.95 E-value=5.3e-08 Score=101.24 Aligned_cols=207 Identities=16% Similarity=0.153 Sum_probs=116.5
Q ss_pred cccccHHHHHHHHHHHhcCCC------------CeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcCh--H
Q psy12150 46 DVIEQQEVVSVLKKCLSGADL------------PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI--Q 111 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~~~~~------------~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~--~ 111 (456)
.+.|++.++..+.-.+-+|.. .|+||+|+||+|||++++.+++..... .+......+..+. .
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~----~~~~~~~~~~~~l~~~ 279 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA----VYTTGKGSSAVGLTAA 279 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc----eEcCCCCCCcCCcccc
Confidence 456777766665555544421 169999999999999999999865321 1111100110000 0
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-------------CcceEEEEecCcc
Q psy12150 112 VIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-------------KSTRFCLICNYVS 178 (456)
Q Consensus 112 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-------------~~~~lIl~~~~~~ 178 (456)
.+++. . ... ..........++..+++|||++.+....+..|++.|++.. ..+.+|.++|...
T Consensus 280 ~~~~~---~-~g~-~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~ 354 (509)
T smart00350 280 VTRDP---E-TRE-FTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIG 354 (509)
T ss_pred ceEcc---C-cce-EEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCC
Confidence 00000 0 000 0000000001345599999999999999999999997632 3456777777431
Q ss_pred -------------cccccccCCce-E-EEecCCCHHHHHHHHHHHH------------------------------HH-c
Q psy12150 179 -------------CIIQPLTSRCS-K-FRFKPLAENTMLTRLQYIC------------------------------EQ-E 212 (456)
Q Consensus 179 -------------kl~~~l~~r~~-~-i~f~~~~~~el~~~l~~~~------------------------------~~-~ 212 (456)
.+.+++.+|+. . +-...++.+.-..++..++ +. -
T Consensus 355 g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~ 434 (509)
T smart00350 355 GRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKI 434 (509)
T ss_pred cccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcC
Confidence 46778889984 2 3334455444333333322 11 1
Q ss_pred CCCCCHHHHHHHHHHc-----C-----------CCHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhC
Q psy12150 213 SVMCDFKALETLVETS-----G-----------GDMRRAITCLQSCARLK---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 213 ~~~i~~~~l~~L~~~s-----~-----------gdlr~~~~~L~~~~~~~---~~~~It~~~v~~~~~ 261 (456)
...+++++.+.|.... . -.+|.+...++-+.+.| ....|+.+||..++.
T Consensus 435 ~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~ 502 (509)
T smart00350 435 KPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIR 502 (509)
T ss_pred CCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 1256788777765421 1 14566666665444433 577888888887764
No 227
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.94 E-value=3.7e-08 Score=103.82 Aligned_cols=192 Identities=16% Similarity=0.132 Sum_probs=114.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCC--CCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEE
Q psy12150 65 DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS--DDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142 (456)
Q Consensus 65 ~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ivi 142 (456)
...++||.|++|+|||++++++++.+... ..++.++.. ...-...+ .+............+.--..++..+++
T Consensus 15 ~~g~vLl~G~~GtgKs~lar~l~~~~~~~---~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~ 89 (589)
T TIGR02031 15 SLGGVAIRARAGTGKTALARALAEILPPI---MPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLY 89 (589)
T ss_pred CcceEEEEcCCCcHHHHHHHHHHHhCCcC---CCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEe
Confidence 35679999999999999999999976432 134544431 11111111 000000000000000000013455999
Q ss_pred EcCCCCccHHHHHHHHHHHHhcc-------------CcceEEEEecCcc---cccccccCCce-EEEecCC-CHHHHHHH
Q psy12150 143 LDEADSMTHAAQAALRRTMEKET-------------KSTRFCLICNYVS---CIIQPLTSRCS-KFRFKPL-AENTMLTR 204 (456)
Q Consensus 143 IDE~d~l~~~~~~~Ll~~le~~~-------------~~~~lIl~~~~~~---kl~~~l~~r~~-~i~f~~~-~~~el~~~ 204 (456)
+||++.+.+..+..|++.|++.. ..+.+|.+.|... .+.+++..|+. .+.+..+ +.++..++
T Consensus 90 lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~ei 169 (589)
T TIGR02031 90 VDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEI 169 (589)
T ss_pred ccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHHH
Confidence 99999999999999999998643 2345665555433 56677888876 3444333 44443444
Q ss_pred HHHHH---------------------H--HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHh---hCCCCCCHH
Q psy12150 205 LQYIC---------------------E--QESVMCDFKALETLVETS---GG-DMRRAITCLQSCARL---KGGEGIVNE 254 (456)
Q Consensus 205 l~~~~---------------------~--~~~~~i~~~~l~~L~~~s---~g-dlr~~~~~L~~~~~~---~~~~~It~~ 254 (456)
+.... + ...+.++++.++.|+..+ +- .+|..+..+.-+... .+...|+.+
T Consensus 170 l~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr~~V~~~ 249 (589)
T TIGR02031 170 VRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGRTEVTEE 249 (589)
T ss_pred HHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 43321 1 135678999888887754 32 367777766554433 378899999
Q ss_pred HHHHHhC
Q psy12150 255 DVLEVTG 261 (456)
Q Consensus 255 ~v~~~~~ 261 (456)
||..++.
T Consensus 250 Dv~~a~~ 256 (589)
T TIGR02031 250 DLKLAVE 256 (589)
T ss_pred HHHHHHH
Confidence 9998865
No 228
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.92 E-value=3.8e-08 Score=101.18 Aligned_cols=217 Identities=21% Similarity=0.218 Sum_probs=123.5
Q ss_pred CCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCc-ChHHHHHHHH--
Q psy12150 42 KTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR-GIQVIRDKVK-- 118 (456)
Q Consensus 42 ~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~-~~~~i~~~l~-- 118 (456)
..|+++.|++..++.+.-.+.++ .+++|.||||+|||++++.+...+.... ....++....... +.......+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~~g--~~vlliG~pGsGKTtlar~l~~llp~~~-~~~~le~~~i~s~~g~~~~~~~~~~~ 265 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAAGG--HNLLLFGPPGSGKTMLASRLQGILPPLT-NEEAIETARIWSLVGKLIDRKQIKQR 265 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhccCC--CEEEEEecCCCCHHHHHHHHhcccCCCC-CcEEEeccccccchhhhccccccccC
Confidence 37999999999998888887655 3699999999999999999987543211 1112221111000 0000000000
Q ss_pred HHH-------HhhccCCCCCCCC----CCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-------------CcceEEEEe
Q psy12150 119 TFA-------QQTASGFNQDGKP----CPPFKIVILDEADSMTHAAQAALRRTMEKET-------------KSTRFCLIC 174 (456)
Q Consensus 119 ~~~-------~~~~~~~~~~~~~----~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-------------~~~~lIl~~ 174 (456)
-|. .....+.....+| .++..++||||++.+....++.|++.|++.. ..+.+|.++
T Consensus 266 Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~ 345 (499)
T TIGR00368 266 PFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAM 345 (499)
T ss_pred CccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEec
Confidence 000 0000000000011 1455699999999999999999999998642 356677777
Q ss_pred cCc-----------------------ccccccccCCce-EEEecCCCHHH------------HHHHHHHH-HHH----cC
Q psy12150 175 NYV-----------------------SCIIQPLTSRCS-KFRFKPLAENT------------MLTRLQYI-CEQ----ES 213 (456)
Q Consensus 175 ~~~-----------------------~kl~~~l~~r~~-~i~f~~~~~~e------------l~~~l~~~-~~~----~~ 213 (456)
|.- .++..+|.+|+. .+.+++++.++ +++.+... ..+ .+
T Consensus 346 Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~ 425 (499)
T TIGR00368 346 NPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEK 425 (499)
T ss_pred CCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 631 146677888887 56777665443 33333211 111 01
Q ss_pred ------------------CCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHH---hhCCCCCCHHHHHHHhC
Q psy12150 214 ------------------VMCDFKALETLVET---SGGDMRRAITCLQSCAR---LKGGEGIVNEDVLEVTG 261 (456)
Q Consensus 214 ------------------~~i~~~~l~~L~~~---s~gdlr~~~~~L~~~~~---~~~~~~It~~~v~~~~~ 261 (456)
..+++++.+.+... .+=..|.....|.-+.. ..+...|+.++|.+++.
T Consensus 426 ~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 426 FANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred CCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 12355554444332 23355655555544433 34678899999988764
No 229
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.90 E-value=9.3e-08 Score=87.38 Aligned_cols=201 Identities=18% Similarity=0.195 Sum_probs=126.4
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHH-------
Q psy12150 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQ------- 122 (456)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~------- 122 (456)
+.+.+..+...+..++ .-+.++|+-|+|||.+.+++...+..+.. ..+.++.........+...+-++..
T Consensus 36 h~e~l~~l~~~i~d~q-g~~~vtGevGsGKTv~~Ral~~s~~~d~~--~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~ 112 (269)
T COG3267 36 HNEALLMLHAAIADGQ-GILAVTGEVGSGKTVLRRALLASLNEDQV--AVVVIDKPTLSDATLLEAIVADLESQPKVNVN 112 (269)
T ss_pred hhHHHHHHHHHHhcCC-ceEEEEecCCCchhHHHHHHHHhcCCCce--EEEEecCcchhHHHHHHHHHHHhccCccchhH
Confidence 4566677777777654 13899999999999999977777665432 2234444332221111111111111
Q ss_pred --------hhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHH---hccCcceEEEEecCc--c----ccccccc
Q psy12150 123 --------QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTME---KETKSTRFCLICNYV--S----CIIQPLT 185 (456)
Q Consensus 123 --------~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le---~~~~~~~lIl~~~~~--~----kl~~~l~ 185 (456)
.......... ...++++||++.+..+..+.|+.+.+ +..+...+++++.+. . -....+.
T Consensus 113 ~~~e~~~~~L~al~~~g~----r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~ 188 (269)
T COG3267 113 AVLEQIDRELAALVKKGK----RPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELE 188 (269)
T ss_pred HHHHHHHHHHHHHHHhCC----CCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhh
Confidence 0000000111 11499999999999999888876654 333334455555321 1 1234466
Q ss_pred CCceE-EEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh---CCCCCCHHHHH
Q psy12150 186 SRCSK-FRFKPLAENTMLTRLQYICEQESVM---CDFKALETLVETSGGDMRRAITCLQSCARLK---GGEGIVNEDVL 257 (456)
Q Consensus 186 ~r~~~-i~f~~~~~~el~~~l~~~~~~~~~~---i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~---~~~~It~~~v~ 257 (456)
.|+.. ++.+|++.++...+|+.+++..+.. ++++++..+...+.|-+|.+-+.+.++...+ ++..|+...++
T Consensus 189 ~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 189 QRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred heEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 77775 9999999999999999999876543 6899999999999997777666665543322 56677766553
No 230
>PHA02244 ATPase-like protein
Probab=98.90 E-value=2.6e-08 Score=96.90 Aligned_cols=129 Identities=15% Similarity=0.116 Sum_probs=83.2
Q ss_pred HHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHH---HHHHhhccCCCCC
Q psy12150 55 SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVK---TFAQQTASGFNQD 131 (456)
Q Consensus 55 ~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~---~~~~~~~~~~~~~ 131 (456)
..+.+++..+. +++|+||+|||||+++++++..+.. +++.++.... ...+...+. .+...+...
T Consensus 110 ~ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~lg~-----pfv~In~l~d--~~~L~G~i~~~g~~~dgpLl~---- 176 (383)
T PHA02244 110 ADIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEALDL-----DFYFMNAIMD--EFELKGFIDANGKFHETPFYE---- 176 (383)
T ss_pred HHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEecChH--HHhhcccccccccccchHHHH----
Confidence 45566666543 5999999999999999999998754 3444542210 000000000 000000000
Q ss_pred CCCCCCcEEEEEcCCCCccHHHHHHHHHHHHh-----------ccCcceEEEEecCc-----------ccccccccCCce
Q psy12150 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEK-----------ETKSTRFCLICNYV-----------SCIIQPLTSRCS 189 (456)
Q Consensus 132 ~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~-----------~~~~~~lIl~~~~~-----------~kl~~~l~~r~~ 189 (456)
......+++|||++.+.++.+..|...+++ ..++..+|+++|.. +.+.+++.+|+.
T Consensus 177 --A~~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv 254 (383)
T PHA02244 177 --AFKKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFA 254 (383)
T ss_pred --HhhcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcE
Confidence 001334999999999999999999888863 23567888888852 456788999999
Q ss_pred EEEecCCCH
Q psy12150 190 KFRFKPLAE 198 (456)
Q Consensus 190 ~i~f~~~~~ 198 (456)
.++|..+++
T Consensus 255 ~I~~dyp~~ 263 (383)
T PHA02244 255 PIEFDYDEK 263 (383)
T ss_pred EeeCCCCcH
Confidence 999988874
No 231
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.89 E-value=7.3e-09 Score=92.97 Aligned_cols=117 Identities=23% Similarity=0.276 Sum_probs=67.1
Q ss_pred CcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCC----------------
Q psy12150 43 TIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD---------------- 106 (456)
Q Consensus 43 ~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~---------------- 106 (456)
.|++|+||+..++.+.-+..++ .|++++||||+|||++++++..-+-. .......++....
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~lLP~-l~~~e~le~~~i~s~~~~~~~~~~~~~~P 77 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSLLPP-LTEEEALEVSKIYSVAGLGPDEGLIRQRP 77 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS---CCEECCESS--S-TT---S---EEEE---
T ss_pred ChhhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHhCCC-CchHHHhhhccccccccCCCCCceecCCC
Confidence 3789999999999999988875 47999999999999999999975421 1111111111100
Q ss_pred CcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhc
Q psy12150 107 DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE 164 (456)
Q Consensus 107 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~ 164 (456)
.+....- .....+..... ...+..-..+++.|+|+||+..+.+...+.|++.+++.
T Consensus 78 fr~phhs-~s~~~liGgg~-~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g 133 (206)
T PF01078_consen 78 FRAPHHS-ASEAALIGGGR-PPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDG 133 (206)
T ss_dssp EEEE-TT---HHHHHEEGG-GEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHS
T ss_pred cccCCCC-cCHHHHhCCCc-CCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCC
Confidence 0000000 00011111100 00000000146679999999999999999999999864
No 232
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.86 E-value=2.8e-08 Score=101.41 Aligned_cols=186 Identities=20% Similarity=0.203 Sum_probs=123.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCC----CCcEEEEE
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC----PPFKIVIL 143 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~----~~~~iviI 143 (456)
++++.|++|+||..+++++++... ...+++-+||.-. ....+...+..+...++.+....+..+ ++...+|+
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~---~~gpfvAvNCaAi-p~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFl 413 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSE---AAGPFVAVNCAAI-PEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFL 413 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhccc---ccCCeEEEEeccc-hHHhhhHHHhccCccccccchhccccccceecCCCccHH
Confidence 399999999999999999999754 3447888998762 223344444443333333222222211 56679999
Q ss_pred cCCCCccHHHHHHHHHHHHhcc----------CcceEEEEecCc-------ccccccccCCce--EEEecCCCHH-HHHH
Q psy12150 144 DEADSMTHAAQAALRRTMEKET----------KSTRFCLICNYV-------SCIIQPLTSRCS--KFRFKPLAEN-TMLT 203 (456)
Q Consensus 144 DE~d~l~~~~~~~Ll~~le~~~----------~~~~lIl~~~~~-------~kl~~~l~~r~~--~i~f~~~~~~-el~~ 203 (456)
||+..|+-+.|..|++.|++.. ..+.+|.+++.. .++-+.|.-|.. +++++|+.+. +...
T Consensus 414 deIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~ 493 (606)
T COG3284 414 DEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIP 493 (606)
T ss_pred HHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcCeeeccCchhcccccHH
Confidence 9999999999999999998642 234466555432 122233333333 6777777542 2223
Q ss_pred HHHHHHHH---cCCCCCHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhCCCCCCHHHHH
Q psy12150 204 RLQYICEQ---ESVMCDFKALETLVE-TSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257 (456)
Q Consensus 204 ~l~~~~~~---~~~~i~~~~l~~L~~-~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~ 257 (456)
.|.++.++ .+..++++++..|.. ..+||+|++.|.++.++..++++.|...|..
T Consensus 494 ~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g~~~~~dlp 551 (606)
T COG3284 494 LLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSDGGRIRVSDLP 551 (606)
T ss_pred HHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCCCeeEcccCC
Confidence 33444443 457899999988665 5799999999999999998877777655543
No 233
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.85 E-value=1.3e-08 Score=90.11 Aligned_cols=102 Identities=25% Similarity=0.362 Sum_probs=69.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc-CCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF-GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~-~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~ 146 (456)
+++|.||+|+|||.+++++++.+. +... +++.+|++.....+.....+..+...+..... ..+..||++||+
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~--~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~-----~~~~gVVllDEi 77 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSER--PLIRIDMSEYSEGDDVESSVSKLLGSPPGYVG-----AEEGGVVLLDEI 77 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCC--EEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHH-----HHHHTEEEEETG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCcc--chHHHhhhcccccchHHhhhhhhhhcccceee-----ccchhhhhhHHH
Confidence 499999999999999999999997 4433 67888888766533222222222221110000 012239999999
Q ss_pred CCccH-----------HHHHHHHHHHHhc-----------cCcceEEEEecC
Q psy12150 147 DSMTH-----------AAQAALRRTMEKE-----------TKSTRFCLICNY 176 (456)
Q Consensus 147 d~l~~-----------~~~~~Ll~~le~~-----------~~~~~lIl~~~~ 176 (456)
|...+ ..++.|++.+++. ..+++||+++|-
T Consensus 78 dKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~ 129 (171)
T PF07724_consen 78 DKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNF 129 (171)
T ss_dssp GGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESS
T ss_pred hhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccc
Confidence 99999 9999999999863 245778888773
No 234
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.85 E-value=3.3e-08 Score=98.75 Aligned_cols=154 Identities=19% Similarity=0.263 Sum_probs=93.5
Q ss_pred cccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCc--cccceEEeeCCCC----------c--C
Q psy12150 44 IDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM--YRERILELNASDD----------R--G 109 (456)
Q Consensus 44 ~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~--~~~~~~e~n~~~~----------~--~ 109 (456)
++++++.+..++.+...+..+ .+++|+||||||||++|+.+++.+.... .+...+.+..+.. . +
T Consensus 174 l~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vg 251 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVG 251 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCC
Confidence 567788888888888888754 3699999999999999999999886532 1222333322110 0 0
Q ss_pred hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHH-HHHHHHHHHh----------------------ccC
Q psy12150 110 IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA-QAALRRTMEK----------------------ETK 166 (456)
Q Consensus 110 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~-~~~Ll~~le~----------------------~~~ 166 (456)
.......+..+...+... + ....++||||+++...+. ...++..|+. .+.
T Consensus 252 y~~~~G~f~~~~~~A~~~------p-~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~ 324 (459)
T PRK11331 252 FRRKDGIFYNFCQQAKEQ------P-EKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPE 324 (459)
T ss_pred eEecCchHHHHHHHHHhc------c-cCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCC
Confidence 000000111111111100 0 123499999999987553 4555555542 134
Q ss_pred cceEEEEecCcc----cccccccCCceEEEecC-CCHHHHHHHHH
Q psy12150 167 STRFCLICNYVS----CIIQPLTSRCSKFRFKP-LAENTMLTRLQ 206 (456)
Q Consensus 167 ~~~lIl~~~~~~----kl~~~l~~r~~~i~f~~-~~~~el~~~l~ 206 (456)
++.+|.+.|... .+..++++|+..+++.| ++...+.+++.
T Consensus 325 Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l~ 369 (459)
T PRK11331 325 NVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFLL 369 (459)
T ss_pred CeEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHHH
Confidence 566777777543 46788999999988887 45555666654
No 235
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.83 E-value=7.5e-09 Score=88.54 Aligned_cols=106 Identities=15% Similarity=0.197 Sum_probs=69.7
Q ss_pred cccHHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhc
Q psy12150 48 IEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTA 125 (456)
Q Consensus 48 vg~~~~~~~l~~~l~~~--~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~ 125 (456)
+|....++.+++.++.- ...+++|+|++||||+++|+.++..-.. ....++.+++.... .+.+.. ..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~--~~~~~~~~~~~~~~-----~~~l~~----a~ 69 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR--ANGPFIVIDCASLP-----AELLEQ----AK 69 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT--CCS-CCCCCHHCTC-----HHHHHH----CT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc--cCCCeEEechhhCc-----HHHHHH----cC
Confidence 46666666666666532 2235999999999999999999986433 22244444554422 111111 11
Q ss_pred cCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhc-cCcceEEEEecC
Q psy12150 126 SGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE-TKSTRFCLICNY 176 (456)
Q Consensus 126 ~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~-~~~~~lIl~~~~ 176 (456)
. ..++|+|++.|+.+.|..|.+++++. ..++++|+++..
T Consensus 70 ~------------gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 70 G------------GTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp T------------SEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred C------------CEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 1 28999999999999999999999864 566788888764
No 236
>PF13173 AAA_14: AAA domain
Probab=98.78 E-value=8e-08 Score=81.03 Aligned_cols=120 Identities=21% Similarity=0.316 Sum_probs=76.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d 147 (456)
.++|+||.|+|||++++.+++.+. ...+++++|..+..........+......... .+..+|||||++
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~iDEiq 71 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPDLLEYFLELIK---------PGKKYIFIDEIQ 71 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhhhHHHHHHhhc---------cCCcEEEEehhh
Confidence 489999999999999999998875 12367777777633322111001111111110 033499999999
Q ss_pred CccHHHHHHHHHHHHhccCcceEEEEecCc----ccccccccCCceEEEecCCCHHHH
Q psy12150 148 SMTHAAQAALRRTMEKETKSTRFCLICNYV----SCIIQPLTSRCSKFRFKPLAENTM 201 (456)
Q Consensus 148 ~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~----~kl~~~l~~r~~~i~f~~~~~~el 201 (456)
.+. +....+..+.++. .+..+++++... .+....+..|...+++.|++-.|.
T Consensus 72 ~~~-~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 72 YLP-DWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hhc-cHHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 986 3445555555554 455566666543 344567888988999999998774
No 237
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.75 E-value=1.9e-07 Score=90.10 Aligned_cols=185 Identities=12% Similarity=0.130 Sum_probs=100.6
Q ss_pred cHHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHH--hcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhc
Q psy12150 50 QQEVVSVLKKCLSGAD--LPHFLFYGPPGTGKTSTMIAACHQ--LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTA 125 (456)
Q Consensus 50 ~~~~~~~l~~~l~~~~--~~~~Ll~G~~G~GKT~~a~~l~~~--l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~ 125 (456)
++..+++|.+.+.... ...+.|+|++|+|||++|..+++. ....+ . .++-++.+.......+...+........
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f-~-~v~wv~~~~~~~~~~~~~~i~~~l~~~~ 78 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRF-D-GVIWVSLSKNPSLEQLLEQILRQLGEPD 78 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCC-T-EEEEEEEES-SCCHHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccc-c-cccccccccccccccccccccccccccc
Confidence 4667888999988733 333999999999999999999977 33322 2 2333333332222332222222211110
Q ss_pred cCC-CCCCC----------CCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccCCceEEEec
Q psy12150 126 SGF-NQDGK----------PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194 (456)
Q Consensus 126 ~~~-~~~~~----------~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~r~~~i~f~ 194 (456)
... ..... -...+-++|+|+++... ..+.+...+.....++.+|+|+... .+..........+++.
T Consensus 79 ~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~-~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 79 SSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDR-SVAGSLGGTDKVIELE 155 (287)
T ss_dssp STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCG-GGGTTHHSCEEEEECS
T ss_pred cccccccccccccccchhhhccccceeeeeeecccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence 000 00000 00234599999987654 3444555454444566777776543 3333333336689999
Q ss_pred CCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHHHH
Q psy12150 195 PLAENTMLTRLQYICEQES---VMCDFKALETLVETSGGDMRRAITCL 239 (456)
Q Consensus 195 ~~~~~el~~~l~~~~~~~~---~~i~~~~l~~L~~~s~gdlr~~~~~L 239 (456)
+++.++..+++...+.... ..-.++..+.|++.++|.+-.+....
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a 203 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIA 203 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999998876544 12235567889999998776544443
No 238
>KOG2170|consensus
Probab=98.74 E-value=2.4e-07 Score=86.30 Aligned_cols=123 Identities=19% Similarity=0.279 Sum_probs=79.4
Q ss_pred ccccHHHH----HHHHHHHhcCCCCe---EEEECCCCCcHHHHHHHHHHHhcCCccccceE-----EeeCCCCcChHHHH
Q psy12150 47 VIEQQEVV----SVLKKCLSGADLPH---FLFYGPPGTGKTSTMIAACHQLFGDMYRERIL-----ELNASDDRGIQVIR 114 (456)
Q Consensus 47 ivg~~~~~----~~l~~~l~~~~~~~---~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~-----e~n~~~~~~~~~i~ 114 (456)
+.||.-++ +.++..+.+..+.. +-|||.+||||+..++.+++.+.....+.+++ ..+.......+..+
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk 163 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYK 163 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHH
Confidence 45654444 44455555554332 78999999999999999999987654443333 22333333444444
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-------CcceEEEEecCc
Q psy12150 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-------KSTRFCLICNYV 177 (456)
Q Consensus 115 ~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-------~~~~lIl~~~~~ 177 (456)
..+.......... | .+.+.|+||+|.|.+...+.|...++-++ ...+|||.+|..
T Consensus 164 ~eL~~~v~~~v~~-------C-~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~g 225 (344)
T KOG2170|consen 164 EELKNRVRGTVQA-------C-QRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAG 225 (344)
T ss_pred HHHHHHHHHHHHh-------c-CCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCc
Confidence 4444433332221 1 55599999999999999988888887433 357889988753
No 239
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.69 E-value=7.1e-07 Score=87.02 Aligned_cols=91 Identities=10% Similarity=-0.079 Sum_probs=64.1
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc-------ccccccccCCceEEEecCCC
Q psy12150 136 PPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------SCIIQPLTSRCSKFRFKPLA 197 (456)
Q Consensus 136 ~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~-------~kl~~~l~~r~~~i~f~~~~ 197 (456)
+++.++-++|+.....+.+..|+..+++.. ...+||.++|.. .+..++|++||..+.++.+.
T Consensus 235 aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~l 314 (361)
T smart00763 235 ANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPYCL 314 (361)
T ss_pred ccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeCCCcC
Confidence 567899999999999999999999887532 123456666643 36689999999988886554
Q ss_pred -HHHHHHHHHHHHHHc---CCCCCHHHHHHHHH
Q psy12150 198 -ENTMLTRLQYICEQE---SVMCDFKALETLVE 226 (456)
Q Consensus 198 -~~el~~~l~~~~~~~---~~~i~~~~l~~L~~ 226 (456)
.++-.++.++.+... +..+.+.+++.++.
T Consensus 315 ~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~ 347 (361)
T smart00763 315 RVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAAL 347 (361)
T ss_pred CHHHHHHHHHHHhccCcCcccccCchHHHHHHH
Confidence 455566666666543 44566666665554
No 240
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.66 E-value=4.7e-07 Score=97.29 Aligned_cols=136 Identities=17% Similarity=0.161 Sum_probs=78.0
Q ss_pred cccccHHHHHHHHHHHhcCC------------------C---CeEEEECCCCCcHHHHHHHHHHHhcCCcc--ccceEEe
Q psy12150 46 DVIEQQEVVSVLKKCLSGAD------------------L---PHFLFYGPPGTGKTSTMIAACHQLFGDMY--RERILEL 102 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~~~~------------------~---~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~--~~~~~e~ 102 (456)
.|.|++.++..+.-.+-+|. . .|+||.|+||+|||.+++.+++......+ ......+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 45677777766655543321 1 15999999999999999999985322110 0011122
Q ss_pred eCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-------------Ccce
Q psy12150 103 NASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-------------KSTR 169 (456)
Q Consensus 103 n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-------------~~~~ 169 (456)
++... . . . .... ........+....++..+++|||++.|+...+..|++.|++.. ..+.
T Consensus 531 gLTa~---~-~--~-~d~~-tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~r 602 (915)
T PTZ00111 531 GLTAS---I-K--F-NESD-NGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETA 602 (915)
T ss_pred cccch---h-h--h-cccc-cCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeE
Confidence 22110 0 0 0 0000 0000000000011355699999999999999999999998642 3466
Q ss_pred EEEEecCc-------------ccccccccCCce
Q psy12150 170 FCLICNYV-------------SCIIQPLTSRCS 189 (456)
Q Consensus 170 lIl~~~~~-------------~kl~~~l~~r~~ 189 (456)
+|.++|+. -.+.++|.+|+.
T Consensus 603 VIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFD 635 (915)
T PTZ00111 603 ILASCNPINSRYNKNKAVIENINISPSLFTRFD 635 (915)
T ss_pred EEEEcCCcccccCcccCcccccCCChHHhhhhc
Confidence 77777752 124577888875
No 241
>KOG0741|consensus
Probab=98.64 E-value=3.6e-08 Score=97.90 Aligned_cols=152 Identities=20% Similarity=0.236 Sum_probs=93.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCC------CcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEE
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD------DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~------~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ivi 142 (456)
+|||||||||||..|+.+.+-+++.... ++ |+.. ..+.+.+++...++....... | ..++-+|||
T Consensus 259 iLLyGPPGTGKTLiARqIGkMLNArePK--IV--NGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~----g-~~SgLHIII 329 (744)
T KOG0741|consen 259 ILLYGPPGTGKTLIARQIGKMLNAREPK--IV--NGPEILNKYVGESEENVRKLFADAEEEQRRL----G-ANSGLHIII 329 (744)
T ss_pred EEEECCCCCChhHHHHHHHHHhcCCCCc--cc--CcHHHHHHhhcccHHHHHHHHHhHHHHHHhh----C-ccCCceEEE
Confidence 9999999999999999999999874331 22 2221 223345555555544332211 1 113567999
Q ss_pred EcCCCCccHH-------------HHHHHHHHHHhc--cCcceEEEEecCcccccccccCCce---EEEecCCCHHHHHHH
Q psy12150 143 LDEADSMTHA-------------AQAALRRTMEKE--TKSTRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTR 204 (456)
Q Consensus 143 IDE~d~l~~~-------------~~~~Ll~~le~~--~~~~~lIl~~~~~~kl~~~l~~r~~---~i~f~~~~~~el~~~ 204 (456)
+||+|.+.+. ..+.|+.-|+.. -.+..+|-.+|+++-+..+|.+.+. .+++.-|++.-..++
T Consensus 330 FDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQI 409 (744)
T KOG0741|consen 330 FDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQI 409 (744)
T ss_pred ehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEE
Confidence 9999998653 244555444321 1345666677888888888887765 567777887776666
Q ss_pred HHHHHH---HcCCCCCHHHHHHHHHHcC
Q psy12150 205 LQYICE---QESVMCDFKALETLVETSG 229 (456)
Q Consensus 205 l~~~~~---~~~~~i~~~~l~~L~~~s~ 229 (456)
++-+-+ ..++--++-.++.|+.++.
T Consensus 410 l~IHT~rMre~~~l~~dVdl~elA~lTK 437 (744)
T KOG0741|consen 410 LKIHTKRMRENNKLSADVDLKELAALTK 437 (744)
T ss_pred EEhhhhhhhhcCCCCCCcCHHHHHHHhc
Confidence 654333 2333223444667777653
No 242
>PRK12377 putative replication protein; Provisional
Probab=98.64 E-value=1.4e-07 Score=88.27 Aligned_cols=125 Identities=20% Similarity=0.302 Sum_probs=73.2
Q ss_pred hccCCCCccccc----ccHHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcCh
Q psy12150 37 EKYRPKTIDDVI----EQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI 110 (456)
Q Consensus 37 eky~P~~~~~iv----g~~~~~~~l~~~l~~~--~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~ 110 (456)
..+...+|+.+. |+..++.....+++.. ...+++|+||||||||+++.++++.+..... .++.++..+ ..
T Consensus 66 ~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~--~v~~i~~~~--l~ 141 (248)
T PRK12377 66 PLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGR--SVIVVTVPD--VM 141 (248)
T ss_pred cccccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCC--CeEEEEHHH--HH
Confidence 345556777775 3334555555554422 2345999999999999999999999865443 344444332 11
Q ss_pred HHHHHHH------HHHHHhhccCCCCCCCCCCCcEEEEEcCC--CCccHHHHHHHHHHHHhccC-cceEEEEecC
Q psy12150 111 QVIRDKV------KTFAQQTASGFNQDGKPCPPFKIVILDEA--DSMTHAAQAALRRTMEKETK-STRFCLICNY 176 (456)
Q Consensus 111 ~~i~~~l------~~~~~~~~~~~~~~~~~~~~~~iviIDE~--d~l~~~~~~~Ll~~le~~~~-~~~lIl~~~~ 176 (456)
..+.... ..+.... ....+|||||+ ...+...++.|..+++.... ....|+++|.
T Consensus 142 ~~l~~~~~~~~~~~~~l~~l-----------~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 142 SRLHESYDNGQSGEKFLQEL-----------CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred HHHHHHHhccchHHHHHHHh-----------cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1111111 0011000 13449999999 45566677888888876443 2345667774
No 243
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.63 E-value=2.4e-06 Score=83.76 Aligned_cols=214 Identities=16% Similarity=0.126 Sum_probs=122.2
Q ss_pred cccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEE---eeCCCCcCh---HHHHHH-
Q psy12150 44 IDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILE---LNASDDRGI---QVIRDK- 116 (456)
Q Consensus 44 ~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e---~n~~~~~~~---~~i~~~- 116 (456)
|..++|++.....|....-......+||-|+.|+||||++++++.-|-.. .++. ++|...... +..+.+
T Consensus 16 f~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~----~~V~gc~f~cdP~~P~~~c~~c~~k~ 91 (423)
T COG1239 16 FTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEI----EVVIGCPFNCDPDDPEEMCDECRAKG 91 (423)
T ss_pred hhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCcc----ceecCCCCCCCCCChhhhhHHHHhhc
Confidence 67789999888776555444455569999999999999999999976321 1111 111111110 000000
Q ss_pred --------------------------------HHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhc
Q psy12150 117 --------------------------------VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE 164 (456)
Q Consensus 117 --------------------------------l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~ 164 (456)
+..........+.+.-.+.+++.|+.|||+..|....++.|+..++..
T Consensus 92 ~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG 171 (423)
T COG1239 92 DELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEG 171 (423)
T ss_pred cccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhC
Confidence 000111111111111122368889999999999999999999998763
Q ss_pred -------------cCcceEEEEecC-cccccccccCCce-EEEecCCC-HHHHHHHHHHHHHH-----------------
Q psy12150 165 -------------TKSTRFCLICNY-VSCIIQPLTSRCS-KFRFKPLA-ENTMLTRLQYICEQ----------------- 211 (456)
Q Consensus 165 -------------~~~~~lIl~~~~-~~kl~~~l~~r~~-~i~f~~~~-~~el~~~l~~~~~~----------------- 211 (456)
+..+++|.+.|. ...+.++|+.|+. .+...++. .++...++.+...-
T Consensus 172 ~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~ 251 (423)
T COG1239 172 VNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRA 251 (423)
T ss_pred CceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Confidence 334566666664 4678899999965 66665554 34444444443331
Q ss_pred ------------cCCCCCHHHHHHHHHHc-----CCCHHHHHHHHH---HHHHhhCCCCCCHHHHHHHhCC
Q psy12150 212 ------------ESVMCDFKALETLVETS-----GGDMRRAITCLQ---SCARLKGGEGIVNEDVLEVTGV 262 (456)
Q Consensus 212 ------------~~~~i~~~~l~~L~~~s-----~gdlr~~~~~L~---~~~~~~~~~~It~~~v~~~~~~ 262 (456)
..+.+++++...++..+ .| .|..+...+ .++.+.+..+++.+|+++....
T Consensus 252 lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g-~radi~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l 321 (423)
T COG1239 252 LRARIIAARSLLSEVELDDDAETKIAELCARLAVDG-HRADIVVVRAAKALAALRGRTEVEEEDIREAAEL 321 (423)
T ss_pred HHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCC-CchhhHHHHHHHHHHHhcCceeeehhhHHHHHhh
Confidence 12345666665555543 12 333333332 2233335667777777766543
No 244
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.60 E-value=1.7e-06 Score=88.82 Aligned_cols=216 Identities=19% Similarity=0.155 Sum_probs=122.4
Q ss_pred CCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCC-------------Cc
Q psy12150 42 KTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD-------------DR 108 (456)
Q Consensus 42 ~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~-------------~~ 108 (456)
..|.++.|+..+++.+.-.+.++ .+++|.||+|+|||++++.+...+..... ...++...-. .+
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~G--~~llliG~~GsGKTtLak~L~gllpp~~g-~e~le~~~i~s~~g~~~~~~~~~~r 264 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAGG--HNLLLIGPPGTGKTMLASRINGLLPDLSN-EEALESAAILSLVNAESVQKQWRQR 264 (506)
T ss_pred cCeEEEECcHHHHhhhheeccCC--cEEEEECCCCCcHHHHHHHHhccCCCCCC-cEEEecchhhhhhccccccCCcCCC
Confidence 37889999998888876666554 36999999999999999999876532111 0112211100 00
Q ss_pred ChHHHHHHHHHHHHhhccCCCCCCCC----CCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-------------CcceEE
Q psy12150 109 GIQVIRDKVKTFAQQTASGFNQDGKP----CPPFKIVILDEADSMTHAAQAALRRTMEKET-------------KSTRFC 171 (456)
Q Consensus 109 ~~~~i~~~l~~~~~~~~~~~~~~~~~----~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-------------~~~~lI 171 (456)
.....-.... .....+.....+| .++..++|+||++.+....++.|++.|++.. ..+.+|
T Consensus 265 Pfr~ph~~~s---~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lI 341 (506)
T PRK09862 265 PFRSPHHSAS---LTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLV 341 (506)
T ss_pred CccCCCccch---HHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEE
Confidence 0000000000 0000000000111 1456699999999999999999999997532 345677
Q ss_pred EEecCc---------------------ccccccccCCce-EEEecCCCHHH-------------HHHHHH---HHHHHc-
Q psy12150 172 LICNYV---------------------SCIIQPLTSRCS-KFRFKPLAENT-------------MLTRLQ---YICEQE- 212 (456)
Q Consensus 172 l~~~~~---------------------~kl~~~l~~r~~-~i~f~~~~~~e-------------l~~~l~---~~~~~~- 212 (456)
.++|.. .++..++.+|+. .+.+++++.++ +++.+. .+...+
T Consensus 342 Aa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~ 421 (506)
T PRK09862 342 AAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQ 421 (506)
T ss_pred EeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHH
Confidence 777642 135567888887 56777664322 322221 000000
Q ss_pred ---C-----------CCCCHHHHHHHH---HHcCCCHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhCCC
Q psy12150 213 ---S-----------VMCDFKALETLV---ETSGGDMRRAITCLQSCARLK---GGEGIVNEDVLEVTGVI 263 (456)
Q Consensus 213 ---~-----------~~i~~~~l~~L~---~~s~gdlr~~~~~L~~~~~~~---~~~~It~~~v~~~~~~~ 263 (456)
+ +.+++++...+. ...+-+.|.....+.-+...+ +...|+.+||.+++.-.
T Consensus 422 ~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~yR 492 (506)
T PRK09862 422 NKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSYR 492 (506)
T ss_pred HHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Confidence 1 234444444332 233446777777765554444 78899999999888744
No 245
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.59 E-value=1.5e-08 Score=83.51 Aligned_cols=84 Identities=25% Similarity=0.231 Sum_probs=47.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCC-----CCCCCCCcEEEE
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ-----DGKPCPPFKIVI 142 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~-----~~~~~~~~~ivi 142 (456)
|+||.|+||+|||++++++++.+..+ +..+.+..+....++.. ........ ...|. -..+++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~-----f~RIq~tpdllPsDi~G-------~~v~~~~~~~f~~~~GPi-f~~ill 67 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLS-----FKRIQFTPDLLPSDILG-------FPVYDQETGEFEFRPGPI-FTNILL 67 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT-------EEEEE--TT--HHHHHE-------EEEEETTTTEEEEEE-TT--SSEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCc-----eeEEEecCCCCccccee-------eeeeccCCCeeEeecChh-hhceee
Confidence 58999999999999999999998654 33344432222222211 11000000 00111 224999
Q ss_pred EcCCCCccHHHHHHHHHHHHhc
Q psy12150 143 LDEADSMTHAAQAALRRTMEKE 164 (456)
Q Consensus 143 IDE~d~l~~~~~~~Ll~~le~~ 164 (456)
+||+.+.++..|.+|++.|++.
T Consensus 68 ~DEiNrappktQsAlLeam~Er 89 (131)
T PF07726_consen 68 ADEINRAPPKTQSALLEAMEER 89 (131)
T ss_dssp EETGGGS-HHHHHHHHHHHHHS
T ss_pred ecccccCCHHHHHHHHHHHHcC
Confidence 9999999999999999999874
No 246
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=6.2e-07 Score=84.18 Aligned_cols=86 Identities=21% Similarity=0.242 Sum_probs=58.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcC----hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEE
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG----IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~----~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviI 143 (456)
|+|+.||.|+|||.+|+.+++.++- ++.--++..... .+++.+.+..+.+....... .+.+.+|+|
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~LnV-----PFaiADATtLTEAGYVGEDVENillkLlqaadydV~-----rAerGIIyI 168 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKILNV-----PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVE-----RAERGIIYI 168 (408)
T ss_pred cEEEECCCCCcHHHHHHHHHHHhCC-----CeeeccccchhhccccchhHHHHHHHHHHHcccCHH-----HHhCCeEEE
Confidence 4999999999999999999998743 344444443222 23455555555554432211 135569999
Q ss_pred cCCCCccH--------------HHHHHHHHHHHh
Q psy12150 144 DEADSMTH--------------AAQAALRRTMEK 163 (456)
Q Consensus 144 DE~d~l~~--------------~~~~~Ll~~le~ 163 (456)
||+|.+.. ..|++|++++|.
T Consensus 169 DEIDKIarkSeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 169 DEIDKIARKSENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred echhhhhccCCCCCcccccCchHHHHHHHHHHcC
Confidence 99999853 368999999974
No 247
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.52 E-value=1.8e-06 Score=72.87 Aligned_cols=99 Identities=24% Similarity=0.210 Sum_probs=57.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChH----------------HHHHHHHHHHHhhccCCCC
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQ----------------VIRDKVKTFAQQTASGFNQ 130 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~----------------~i~~~l~~~~~~~~~~~~~ 130 (456)
.+++|+||||+|||++++.++..+.... ..++.++++...... .-..............
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL--- 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc---
Confidence 3599999999999999999999886643 134555444321110 0011111111111111
Q ss_pred CCCCCCCcEEEEEcCCCCccHHHHHHHHH--------HHHhccCcceEEEEecC
Q psy12150 131 DGKPCPPFKIVILDEADSMTHAAQAALRR--------TMEKETKSTRFCLICNY 176 (456)
Q Consensus 131 ~~~~~~~~~iviIDE~d~l~~~~~~~Ll~--------~le~~~~~~~lIl~~~~ 176 (456)
...+|++||++.+.......... ..........+|+++|.
T Consensus 78 ------~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 78 ------KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred ------CCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 12499999999998765544332 22334455667777774
No 248
>PRK08181 transposase; Validated
Probab=98.51 E-value=5.4e-07 Score=85.45 Aligned_cols=109 Identities=20% Similarity=0.313 Sum_probs=60.8
Q ss_pred HHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCC
Q psy12150 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135 (456)
Q Consensus 56 ~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 135 (456)
.+..|+..+ .+++|+||+|+|||+++.++++++..... .++.++..+ +.+.+.......... ..-...
T Consensus 98 ~~~~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~~~g~--~v~f~~~~~------L~~~l~~a~~~~~~~--~~l~~l 165 (269)
T PRK08181 98 AGDSWLAKG--ANLLLFGPPGGGKSHLAAAIGLALIENGW--RVLFTRTTD------LVQKLQVARRELQLE--SAIAKL 165 (269)
T ss_pred HHHHHHhcC--ceEEEEecCCCcHHHHHHHHHHHHHHcCC--ceeeeeHHH------HHHHHHHHHhCCcHH--HHHHHH
Confidence 344677644 46999999999999999999988754433 344443322 112111110000000 000000
Q ss_pred CCcEEEEEcCCCCccH--HHHHHHHHHHHhccCcceEEEEecC
Q psy12150 136 PPFKIVILDEADSMTH--AAQAALRRTMEKETKSTRFCLICNY 176 (456)
Q Consensus 136 ~~~~iviIDE~d~l~~--~~~~~Ll~~le~~~~~~~lIl~~~~ 176 (456)
....+|||||++.... ...+.|.++++.......+|+++|.
T Consensus 166 ~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 166 DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 1334999999987744 3455677777653333456677774
No 249
>PRK08116 hypothetical protein; Validated
Probab=98.51 E-value=6e-07 Score=85.49 Aligned_cols=147 Identities=16% Similarity=0.232 Sum_probs=83.2
Q ss_pred hccCCCCccccccc---HHHHHHHHHHHhc----CC-CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCc
Q psy12150 37 EKYRPKTIDDVIEQ---QEVVSVLKKCLSG----AD-LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (456)
Q Consensus 37 eky~P~~~~~ivg~---~~~~~~l~~~l~~----~~-~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~ 108 (456)
++|.-.+|+.+... ..++...++++++ .. ..+++|+|++|+|||+++.++++.+..... .++.++..+.
T Consensus 77 ~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~--~v~~~~~~~l- 153 (268)
T PRK08116 77 EKFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGV--PVIFVNFPQL- 153 (268)
T ss_pred HHHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCC--eEEEEEHHHH-
Confidence 45555677776532 2334445544442 11 123999999999999999999999865422 4555554321
Q ss_pred ChHHHHHHH--------HHHHHhhccCCCCCCCCCCCcEEEEEcCC--CCccHHHHHHHHHHHHhc-cCcceEEEEecCc
Q psy12150 109 GIQVIRDKV--------KTFAQQTASGFNQDGKPCPPFKIVILDEA--DSMTHAAQAALRRTMEKE-TKSTRFCLICNYV 177 (456)
Q Consensus 109 ~~~~i~~~l--------~~~~~~~~~~~~~~~~~~~~~~iviIDE~--d~l~~~~~~~Ll~~le~~-~~~~~lIl~~~~~ 177 (456)
...+.... ..+.... ....+|||||+ +..+...++.|..+++.. .....+|+++|..
T Consensus 154 -l~~i~~~~~~~~~~~~~~~~~~l-----------~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 154 -LNRIKSTYKSSGKEDENEIIRSL-----------VNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -HHHHHHHHhccccccHHHHHHHh-----------cCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 11111110 0011000 13349999999 455666777788777653 2334567777753
Q ss_pred c-c----ccccccCC----ceEEEecCCCH
Q psy12150 178 S-C----IIQPLTSR----CSKFRFKPLAE 198 (456)
Q Consensus 178 ~-k----l~~~l~~r----~~~i~f~~~~~ 198 (456)
. . +...+.+| |..+.|...+.
T Consensus 222 ~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 222 LEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred HHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 2 2 23345555 55677766553
No 250
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.49 E-value=5.4e-06 Score=86.89 Aligned_cols=190 Identities=14% Similarity=0.108 Sum_probs=117.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEe--eCCCCc--ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEE
Q psy12150 65 DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILEL--NASDDR--GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140 (456)
Q Consensus 65 ~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~--n~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i 140 (456)
....++|.|+.|++|+++++.++.-+-.. .+++.+ +.++.. +..++...+.. ......+.--..+++.|
T Consensus 24 ~~gGv~i~g~~G~~ks~~~r~l~~llp~~---~p~r~~p~~~t~~~L~Gg~Dl~~~l~~----g~~~~~pGlla~Ah~Gv 96 (584)
T PRK13406 24 GLGGVVLRARAGPVRDRWLAALRALLPAG---TPLRRLPPGIADDRLLGGLDLAATLRA----GRPVAQRGLLAEADGGV 96 (584)
T ss_pred ccceEEEEcCCCcHHHHHHHHHHHhcCCC---CCcccCCCCCcHHHccCCchHHhHhhc----CCcCCCCCceeeccCCE
Confidence 44569999999999999999999876431 233332 333211 12222222211 11000111011146679
Q ss_pred EEEcCCCCccHHHHHHHHHHHHhccC-------------cceEEEEec---CcccccccccCCce-EEEecCCCHHHHH-
Q psy12150 141 VILDEADSMTHAAQAALRRTMEKETK-------------STRFCLICN---YVSCIIQPLTSRCS-KFRFKPLAENTML- 202 (456)
Q Consensus 141 viIDE~d~l~~~~~~~Ll~~le~~~~-------------~~~lIl~~~---~~~kl~~~l~~r~~-~i~f~~~~~~el~- 202 (456)
+|+||+..+.+..++.|++.|++... ...+|.+-+ +..++.+++..|+. .+.+..++..+..
T Consensus 97 L~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~~~~ 176 (584)
T PRK13406 97 LVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRDARE 176 (584)
T ss_pred EEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHHhcc
Confidence 99999999999999999999987432 222332211 12447778999987 6777777755432
Q ss_pred ------HHHHHHHHHcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhC
Q psy12150 203 ------TRLQYICEQESVMCDFKALETLVETS---GG-DMRRAITCLQSCARLK---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 203 ------~~l~~~~~~~~~~i~~~~l~~L~~~s---~g-dlr~~~~~L~~~~~~~---~~~~It~~~v~~~~~ 261 (456)
++...+..-.++.++++.++.++..+ +- ..|..+..+.-+..++ +...|+.+||.+++.
T Consensus 177 ~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~ 248 (584)
T PRK13406 177 IPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAAR 248 (584)
T ss_pred cCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 22222222247889999999877654 32 6677777776554444 788999999998864
No 251
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.49 E-value=2.3e-06 Score=79.52 Aligned_cols=193 Identities=17% Similarity=0.162 Sum_probs=115.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc-CCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCC--CC-CCCCCcEEEEE
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF-GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ--DG-KPCPPFKIVIL 143 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~-~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~--~~-~~~~~~~iviI 143 (456)
++|+.||.|.||+.+++.+..--. ...+...++++||...++-............ ++.+... .| ..+++...+|+
T Consensus 210 p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkg-aftga~~~r~gllrsadggmlfl 288 (531)
T COG4650 210 PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKG-AFTGARESREGLLRSADGGMLFL 288 (531)
T ss_pred CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhcc-ccccchhhhhhhhccCCCceEeh
Confidence 499999999999999999875321 2344568999999987776554443332211 1111000 00 01245569999
Q ss_pred cCCCCccHHHHHHHHHHHHhccC-----------cceEEEEec-C------cccccccccCCceEEEecCCCH----HHH
Q psy12150 144 DEADSMTHAAQAALRRTMEKETK-----------STRFCLICN-Y------VSCIIQPLTSRCSKFRFKPLAE----NTM 201 (456)
Q Consensus 144 DE~d~l~~~~~~~Ll~~le~~~~-----------~~~lIl~~~-~------~~kl~~~l~~r~~~i~f~~~~~----~el 201 (456)
||+..|..+.|..|++.+++..- ...+|..+- + ...+-+.+..|...+.|.-|.- +++
T Consensus 289 deigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~arinlwtf~lpgl~qr~edi 368 (531)
T COG4650 289 DEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDI 368 (531)
T ss_pred HhhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhhheeeeeccccccCcccc
Confidence 99999999999999999986421 111222111 0 0112233444544444443321 111
Q ss_pred ----HHHHHHHHHHcC--CCCCHHHHHHHHH-------HcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhC
Q psy12150 202 ----LTRLQYICEQES--VMCDFKALETLVE-------TSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261 (456)
Q Consensus 202 ----~~~l~~~~~~~~--~~i~~~~l~~L~~-------~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~ 261 (456)
---|...+...| +.+..++-..-.. ...||.|++-.-+-..+..+.++.||.+.|++-+.
T Consensus 369 epnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatlad~grit~~~ve~ei~ 441 (531)
T COG4650 369 EPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLADSGRITLDVVEDEIN 441 (531)
T ss_pred CCCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHhcCCceeHHHHHHHHH
Confidence 122444454444 4556665544332 23699999999998888888888999998876554
No 252
>PF05729 NACHT: NACHT domain
Probab=98.48 E-value=1.1e-06 Score=77.20 Aligned_cols=142 Identities=13% Similarity=0.160 Sum_probs=78.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCcccc----ceEEeeCCCCcChH---HHHHHHHHHHHhhccCCCC---CCCCCCCc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRE----RILELNASDDRGIQ---VIRDKVKTFAQQTASGFNQ---DGKPCPPF 138 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~----~~~e~n~~~~~~~~---~i~~~l~~~~~~~~~~~~~---~~~~~~~~ 138 (456)
++|+|++|+|||++++.++..+....... -++.++........ .+.+.+............. .......+
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 79999999999999999998876543211 12233333221111 2222222211110000000 00000234
Q ss_pred EEEEEcCCCCccHHHH--------HHHHHHHHh-ccCcceEEEEecCccc-ccccccCCceEEEecCCCHHHHHHHHHHH
Q psy12150 139 KIVILDEADSMTHAAQ--------AALRRTMEK-ETKSTRFCLICNYVSC-IIQPLTSRCSKFRFKPLAENTMLTRLQYI 208 (456)
Q Consensus 139 ~iviIDE~d~l~~~~~--------~~Ll~~le~-~~~~~~lIl~~~~~~k-l~~~l~~r~~~i~f~~~~~~el~~~l~~~ 208 (456)
-++|||.+|.+..... +.|..++.. ..+.+.+++++..... -..........+.+.+++++++.+++++.
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLRKY 162 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHHHH
Confidence 4899999999876332 234455655 3456667777654321 12222233367899999999999999887
Q ss_pred HH
Q psy12150 209 CE 210 (456)
Q Consensus 209 ~~ 210 (456)
++
T Consensus 163 f~ 164 (166)
T PF05729_consen 163 FS 164 (166)
T ss_pred hh
Confidence 65
No 253
>KOG1051|consensus
Probab=98.46 E-value=1e-06 Score=94.60 Aligned_cols=117 Identities=23% Similarity=0.394 Sum_probs=84.0
Q ss_pred cccccHHHHHHHHHHHhcCC-------CCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCc---------
Q psy12150 46 DVIEQQEVVSVLKKCLSGAD-------LPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR--------- 108 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~~~~-------~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~--------- 108 (456)
.++||++++..+..++...+ +.. ++|.||.|+|||.+|++++..+++... .++.++.+...
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~--~~IriDmse~~evskligsp 640 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEE--NFIRLDMSEFQEVSKLIGSP 640 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCcc--ceEEechhhhhhhhhccCCC
Confidence 56899999998888875322 222 999999999999999999999977544 57777776411
Q ss_pred ----ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEE
Q psy12150 109 ----GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLI 173 (456)
Q Consensus 109 ----~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~ 173 (456)
+..... .+.+.... .++.||++||++.-....++.|++.+++.. .+++||++
T Consensus 641 ~gyvG~e~gg-~Lteavrr------------rP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMT 707 (898)
T KOG1051|consen 641 PGYVGKEEGG-QLTEAVKR------------RPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMT 707 (898)
T ss_pred cccccchhHH-HHHHHHhc------------CCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEe
Confidence 111111 11111111 366799999999999999999999998643 46889998
Q ss_pred ecCc
Q psy12150 174 CNYV 177 (456)
Q Consensus 174 ~~~~ 177 (456)
+|.-
T Consensus 708 sn~~ 711 (898)
T KOG1051|consen 708 SNVG 711 (898)
T ss_pred cccc
Confidence 8753
No 254
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.45 E-value=9.7e-07 Score=82.48 Aligned_cols=133 Identities=17% Similarity=0.277 Sum_probs=73.4
Q ss_pred hhccCCCCcccccc----cHHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcC
Q psy12150 36 VEKYRPKTIDDVIE----QQEVVSVLKKCLSGAD--LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG 109 (456)
Q Consensus 36 ~eky~P~~~~~ivg----~~~~~~~l~~~l~~~~--~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~ 109 (456)
.+.|++.+|+++.. +..++..+.+++++.. ..+++|+|++|+|||+++.++++.+..... .++.++..+
T Consensus 63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~--~v~~it~~~--- 137 (244)
T PRK07952 63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGK--SVLIITVAD--- 137 (244)
T ss_pred CccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCC--eEEEEEHHH---
Confidence 45677788988863 3345666777765422 235999999999999999999999865433 444444322
Q ss_pred hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH--HHHHHHHHHHhc-cCcceEEEEecC
Q psy12150 110 IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--AQAALRRTMEKE-TKSTRFCLICNY 176 (456)
Q Consensus 110 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~--~~~~Ll~~le~~-~~~~~lIl~~~~ 176 (456)
+...+..............-.......+|||||++..... ..+.|..+++.. ......|+++|.
T Consensus 138 ---l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 138 ---IMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred ---HHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 1111111000000000000000013449999999876432 344566666643 223445667774
No 255
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=3.5e-07 Score=90.81 Aligned_cols=121 Identities=24% Similarity=0.289 Sum_probs=71.5
Q ss_pred CCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeC------CCCcChH---
Q psy12150 41 PKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA------SDDRGIQ--- 111 (456)
Q Consensus 41 P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~------~~~~~~~--- 111 (456)
...|.|++||+..++.+.-+..+| +|++++||||||||.+++.+..-+- +......+|++. ....+..
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAGg--HnLl~~GpPGtGKTmla~Rl~~lLP-pls~~E~lE~s~I~s~~g~~~~~~~~~~ 251 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAGG--HNLLLVGPPGTGKTMLASRLPGLLP-PLSIPEALEVSAIHSLAGDLHEGCPLKI 251 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhcC--CcEEEecCCCCchHHhhhhhcccCC-CCChHHHHHHHHHhhhcccccccCccce
Confidence 347999999999999999998877 3699999999999999999876441 111111111110 0000000
Q ss_pred --HHHHHHHHHHHhhccCCCCCCCCC----CCcEEEEEcCCCCccHHHHHHHHHHHHhc
Q psy12150 112 --VIRDKVKTFAQQTASGFNQDGKPC----PPFKIVILDEADSMTHAAQAALRRTMEKE 164 (456)
Q Consensus 112 --~i~~~l~~~~~~~~~~~~~~~~~~----~~~~iviIDE~d~l~~~~~~~Ll~~le~~ 164 (456)
.++.---..+.....+.+...+|+ ++..|+|+||+..+.....+.|+.=||+.
T Consensus 252 ~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g 310 (490)
T COG0606 252 HRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENG 310 (490)
T ss_pred eCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccC
Confidence 000000000000000111111222 56779999999999998889888888764
No 256
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.44 E-value=4.2e-07 Score=76.68 Aligned_cols=107 Identities=17% Similarity=0.272 Sum_probs=61.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCcc---ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCC---------CC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGDMY---RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK---------PC 135 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~~~---~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~---------~~ 135 (456)
.++++||+|+|||++++.+++.+..... ...++.+++........+...+................ ..
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 4899999999999999999998742100 23566666655444444443333332221111000000 00
Q ss_pred CCcEEEEEcCCCCc-cHHHHHHHHHHHHhccCcceEEEEecC
Q psy12150 136 PPFKIVILDEADSM-THAAQAALRRTMEKETKSTRFCLICNY 176 (456)
Q Consensus 136 ~~~~iviIDE~d~l-~~~~~~~Ll~~le~~~~~~~lIl~~~~ 176 (456)
....+|||||+|.+ ..+..+.|..+.+ ...+.+|+++.+
T Consensus 86 ~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 86 RRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp CTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred cCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 12349999999999 8777777776666 445667777654
No 257
>KOG0745|consensus
Probab=98.44 E-value=2e-06 Score=83.83 Aligned_cols=169 Identities=20% Similarity=0.250 Sum_probs=106.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcCh----HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEE
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI----QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~----~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviI 143 (456)
++|+.||.|+|||.+++.+++-++ .++.-.+|....-. +++...+..+...+...... +.+.||||
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ld-----VPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVek-----AQqGIVfl 297 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLD-----VPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEK-----AQQGIVFL 297 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhC-----CCeEEecccchhhcccccccHHHHHHHHHHHccCCHHH-----HhcCeEEE
Confidence 499999999999999999999863 35666677653222 23444444444333221110 23449999
Q ss_pred cCCCCccH--------------HHHHHHHHHHHhc--------c-----C------cceEEEEecC--------------
Q psy12150 144 DEADSMTH--------------AAQAALRRTMEKE--------T-----K------STRFCLICNY-------------- 176 (456)
Q Consensus 144 DE~d~l~~--------------~~~~~Ll~~le~~--------~-----~------~~~lIl~~~~-------------- 176 (456)
||+|.+.. ..|++|++++|.. . . ++-++|++..
T Consensus 298 DEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~ 377 (564)
T KOG0745|consen 298 DEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLD 377 (564)
T ss_pred ehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhc
Confidence 99999963 3688999999731 0 0 1112333210
Q ss_pred --------c----------c--------------------------cccccccCCce-EEEecCCCHHHHHHHHHH----
Q psy12150 177 --------V----------S--------------------------CIIQPLTSRCS-KFRFKPLAENTMLTRLQY---- 207 (456)
Q Consensus 177 --------~----------~--------------------------kl~~~l~~r~~-~i~f~~~~~~el~~~l~~---- 207 (456)
+ . -++|.+..|+- .+.|.+++++++..+|..
T Consensus 378 d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPkna 457 (564)
T KOG0745|consen 378 DKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNA 457 (564)
T ss_pred chhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhh
Confidence 0 0 01344555554 688999999998887742
Q ss_pred -------HHHHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHHhh
Q psy12150 208 -------ICEQES--VMCDFKALETLVETS---GGDMRRAITCLQSCARLK 246 (456)
Q Consensus 208 -------~~~~~~--~~i~~~~l~~L~~~s---~gdlr~~~~~L~~~~~~~ 246 (456)
.+...+ ..+++++++.|++.+ +.-.|-+...++++..-+
T Consensus 458 L~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Llea 508 (564)
T KOG0745|consen 458 LGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEA 508 (564)
T ss_pred HHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhh
Confidence 122233 347899999999875 445777888888876644
No 258
>PRK06526 transposase; Provisional
Probab=98.42 E-value=3.5e-07 Score=86.23 Aligned_cols=122 Identities=17% Similarity=0.191 Sum_probs=65.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCC
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~ 146 (456)
.+++|+||||+|||+++.+++.++...... +...+.. .+.+.+......... ...-.......+|||||+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~--v~f~t~~------~l~~~l~~~~~~~~~--~~~l~~l~~~dlLIIDD~ 168 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHR--VLFATAA------QWVARLAAAHHAGRL--QAELVKLGRYPLLIVDEV 168 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCc--hhhhhHH------HHHHHHHHHHhcCcH--HHHHHHhccCCEEEEccc
Confidence 469999999999999999999887543332 2222121 111111110000000 000000013459999999
Q ss_pred CCcc--HHHHHHHHHHHHhccCcceEEEEecCccc--------------ccccccCCceEEEecCCCH
Q psy12150 147 DSMT--HAAQAALRRTMEKETKSTRFCLICNYVSC--------------IIQPLTSRCSKFRFKPLAE 198 (456)
Q Consensus 147 d~l~--~~~~~~Ll~~le~~~~~~~lIl~~~~~~k--------------l~~~l~~r~~~i~f~~~~~ 198 (456)
+.+. ....+.|..+++.......+|+++|.+.. +.+.|...+..+.|...+.
T Consensus 169 g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~s~ 236 (254)
T PRK06526 169 GYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDSY 236 (254)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecCCCc
Confidence 9774 55566677777643333446777775311 2234445566777766543
No 259
>PF14516 AAA_35: AAA-like domain
Probab=98.41 E-value=0.00013 Score=71.73 Aligned_cols=197 Identities=17% Similarity=0.152 Sum_probs=113.8
Q ss_pred cccHHHHHHHHHHHhc-CCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC-----cChHHHHHHH-HHH
Q psy12150 48 IEQQEVVSVLKKCLSG-ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD-----RGIQVIRDKV-KTF 120 (456)
Q Consensus 48 vg~~~~~~~l~~~l~~-~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~-----~~~~~i~~~l-~~~ 120 (456)
+.++.+-+.+.+.+.. |. .+.|+||..+|||+++.++.+.+....+ ..+.+|.... ...+.....+ ..+
T Consensus 14 i~R~~~e~~~~~~i~~~G~--~~~I~apRq~GKTSll~~l~~~l~~~~~--~~v~id~~~~~~~~~~~~~~f~~~~~~~i 89 (331)
T PF14516_consen 14 IERPPAEQECYQEIVQPGS--YIRIKAPRQMGKTSLLLRLLERLQQQGY--RCVYIDLQQLGSAIFSDLEQFLRWFCEEI 89 (331)
T ss_pred cCchHHHHHHHHHHhcCCC--EEEEECcccCCHHHHHHHHHHHHHHCCC--EEEEEEeecCCCcccCCHHHHHHHHHHHH
Confidence 4455555666666654 43 4899999999999999999988866544 3444444431 1122111111 111
Q ss_pred HHhhcc----------CCCCCC-----------CCCCCcEEEEEcCCCCccH------HHHHHHHHHHHhc-----cCcc
Q psy12150 121 AQQTAS----------GFNQDG-----------KPCPPFKIVILDEADSMTH------AAQAALRRTMEKE-----TKST 168 (456)
Q Consensus 121 ~~~~~~----------~~~~~~-----------~~~~~~~iviIDE~d~l~~------~~~~~Ll~~le~~-----~~~~ 168 (456)
...... ...... ......-|++|||+|.+.. +....|+.+-++. ....
T Consensus 90 ~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L 169 (331)
T PF14516_consen 90 SRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKL 169 (331)
T ss_pred HHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceE
Confidence 100000 000000 0002234999999998875 1233334333322 2345
Q ss_pred eEEEEecCccccc-----ccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy12150 169 RFCLICNYVSCII-----QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243 (456)
Q Consensus 169 ~lIl~~~~~~kl~-----~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~ 243 (456)
++|++......+. .++ +-+..+++++.+.+|+...++. .+..++++.++.|...++|.+--+...+..++
T Consensus 170 ~li~~~~t~~~~~~~~~~SPF-NIg~~i~L~~Ft~~ev~~L~~~----~~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l~ 244 (331)
T PF14516_consen 170 RLILAGSTEDYIILDINQSPF-NIGQPIELPDFTPEEVQELAQR----YGLEFSQEQLEQLMDWTGGHPYLVQKACYLLV 244 (331)
T ss_pred EEEEecCcccccccCCCCCCc-ccccceeCCCCCHHHHHHHHHh----hhccCCHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5666654221111 122 4455889999999998776554 46778899999999999999987777776665
Q ss_pred HhhCCCCCCHHHHH
Q psy12150 244 RLKGGEGIVNEDVL 257 (456)
Q Consensus 244 ~~~~~~~It~~~v~ 257 (456)
. +.++.+++-
T Consensus 245 ~----~~~~~~~l~ 254 (331)
T PF14516_consen 245 E----EQITLEQLL 254 (331)
T ss_pred H----ccCcHHHHH
Confidence 4 356655544
No 260
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.4e-05 Score=75.86 Aligned_cols=107 Identities=22% Similarity=0.230 Sum_probs=73.3
Q ss_pred cEEEEEcCCCCccH------------HHHHHHHHHHHhcc----------CcceEEEEec----CcccccccccCCce-E
Q psy12150 138 FKIVILDEADSMTH------------AAQAALRRTMEKET----------KSTRFCLICN----YVSCIIQPLTSRCS-K 190 (456)
Q Consensus 138 ~~iviIDE~d~l~~------------~~~~~Ll~~le~~~----------~~~~lIl~~~----~~~kl~~~l~~r~~-~ 190 (456)
..+|||||+|.+.. ..|..|+.++|... ++..||.++. .++.+.|.|..|+- +
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIR 330 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIR 330 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceE
Confidence 35999999998843 24666777776422 2233443332 46789999999987 8
Q ss_pred EEecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHc---C-----CCHHHHHHHHHHHHH
Q psy12150 191 FRFKPLAENTMLTRLQY-----------ICEQESV--MCDFKALETLVETS---G-----GDMRRAITCLQSCAR 244 (456)
Q Consensus 191 i~f~~~~~~el~~~l~~-----------~~~~~~~--~i~~~~l~~L~~~s---~-----gdlr~~~~~L~~~~~ 244 (456)
+++.+++.+++.++|.. .++-+|+ .|++++++.|++.+ + =-.|++-..++++..
T Consensus 331 VEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLe 405 (444)
T COG1220 331 VELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLE 405 (444)
T ss_pred EEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHH
Confidence 99999999998887742 2233554 57899999998764 1 125666666666544
No 261
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.39 E-value=1.7e-05 Score=88.95 Aligned_cols=188 Identities=12% Similarity=0.125 Sum_probs=108.8
Q ss_pred CCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHH
Q psy12150 41 PKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120 (456)
Q Consensus 41 P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~ 120 (456)
|..-..++-++...+.+... ...+-++|+||+|+||||++..++.... ....+.++..+.....-....+..+
T Consensus 10 p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~~----~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGKN----NLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred CCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhCC----CeEEEecCcccCCHHHHHHHHHHHH
Confidence 44455667777776666432 2233499999999999999999886532 2234445444422211111111111
Q ss_pred HHhhccCCC-------CCCC---------------CCCCcEEEEEcCCCCccHHHHH-HHHHHHHhccCcceEEEEecCc
Q psy12150 121 AQQTASGFN-------QDGK---------------PCPPFKIVILDEADSMTHAAQA-ALRRTMEKETKSTRFCLICNYV 177 (456)
Q Consensus 121 ~~~~~~~~~-------~~~~---------------~~~~~~iviIDE~d~l~~~~~~-~Ll~~le~~~~~~~lIl~~~~~ 177 (456)
......... ..+. .....-+|||||++.+...... .+...+...++...+|+++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 100000000 0000 0013348999999999755544 5555566666777777776542
Q ss_pred ccc-cccccCCceEEEec----CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Q psy12150 178 SCI-IQPLTSRCSKFRFK----PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITC 238 (456)
Q Consensus 178 ~kl-~~~l~~r~~~i~f~----~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~ 238 (456)
..+ ...+.-+...+++. +++.+|...++... .|..++++.++.|.+.|+|.+-.+.-.
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~---~~~~~~~~~~~~l~~~t~Gwp~~l~l~ 225 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQR---LSSPIEAAESSRLCDDVEGWATALQLI 225 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCChHHHHHHH
Confidence 222 12222233334444 88999999988754 356789999999999999998665433
No 262
>PRK04132 replication factor C small subunit; Provisional
Probab=98.36 E-value=2.4e-07 Score=99.85 Aligned_cols=51 Identities=49% Similarity=0.997 Sum_probs=48.3
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHH
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~ 82 (456)
+.||.++|||.+|+|++|++.+++.|+.+++.++.+|++|+||||+||+.+
T Consensus 6 ~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 6 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred cccHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEECCCCCCcccc
Confidence 469999999999999999999999999999999999988999999999754
No 263
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.35 E-value=9.2e-06 Score=69.22 Aligned_cols=124 Identities=15% Similarity=0.308 Sum_probs=68.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccc-----------------cceEEeeCCC-----------------CcChHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMYR-----------------ERILELNASD-----------------DRGIQVIR 114 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~~-----------------~~~~e~n~~~-----------------~~~~~~i~ 114 (456)
+.++|+||+||||++..+++.+....+. +.++.+.... .-..+.+.
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~le 87 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGLE 87 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHHHH
Confidence 8999999999999999999888643221 1222222111 01122333
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCcc---HHHHHHHHHHHHhccCcceEEEEec--CcccccccccCCce
Q psy12150 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT---HAAQAALRRTMEKETKSTRFCLICN--YVSCIIQPLTSRCS 189 (456)
Q Consensus 115 ~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~---~~~~~~Ll~~le~~~~~~~lIl~~~--~~~kl~~~l~~r~~ 189 (456)
+......+.+.. ..+++||||+..|- +...+.+-+.|....+ +|++-. .++-+.+.++++..
T Consensus 88 ~i~~~al~rA~~----------~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp---liatlHrrsr~P~v~~ik~~~~ 154 (179)
T COG1618 88 EIAIPALRRALE----------EADVIIIDEIGPMELKSKKFREAVEEVLKSGKP---LIATLHRRSRHPLVQRIKKLGG 154 (179)
T ss_pred HHhHHHHHHHhh----------cCCEEEEecccchhhccHHHHHHHHHHhcCCCc---EEEEEecccCChHHHHhhhcCC
Confidence 232222222211 22499999998873 3344555556654332 444433 34556677888877
Q ss_pred EEE-ecCCCHHHHHHHH
Q psy12150 190 KFR-FKPLAENTMLTRL 205 (456)
Q Consensus 190 ~i~-f~~~~~~el~~~l 205 (456)
.+- +.+-+.+.+...+
T Consensus 155 v~v~lt~~NR~~i~~~I 171 (179)
T COG1618 155 VYVFLTPENRNRILNEI 171 (179)
T ss_pred EEEEEccchhhHHHHHH
Confidence 666 4554555443333
No 264
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.32 E-value=1.4e-06 Score=83.10 Aligned_cols=148 Identities=18% Similarity=0.231 Sum_probs=85.3
Q ss_pred HHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCC-CCCCC
Q psy12150 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ-DGKPC 135 (456)
Q Consensus 57 l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~ 135 (456)
+..++..++ ++||.||+|||||.+++.+.+.+..+.+ ....++.+.......++..++..... ..+. .+.+.
T Consensus 26 l~~l~~~~~--pvLl~G~~GtGKT~li~~~l~~l~~~~~--~~~~~~~s~~Tts~~~q~~ie~~l~k---~~~~~~gP~~ 98 (272)
T PF12775_consen 26 LDLLLSNGR--PVLLVGPSGTGKTSLIQNFLSSLDSDKY--LVITINFSAQTTSNQLQKIIESKLEK---RRGRVYGPPG 98 (272)
T ss_dssp HHHHHHCTE--EEEEESSTTSSHHHHHHHHHHCSTTCCE--EEEEEES-TTHHHHHHHHCCCTTECE---CTTEEEEEES
T ss_pred HHHHHHcCC--cEEEECCCCCchhHHHHhhhccCCcccc--ceeEeeccCCCCHHHHHHHHhhcEEc---CCCCCCCCCC
Confidence 445556543 6999999999999999998887654332 24456666544444443333221110 0000 01122
Q ss_pred CCcEEEEEcCCCCccHH------HHHHHHHHHHhcc------------CcceEEEEecCc---ccccccccCCceEEEec
Q psy12150 136 PPFKIVILDEADSMTHA------AQAALRRTMEKET------------KSTRFCLICNYV---SCIIQPLTSRCSKFRFK 194 (456)
Q Consensus 136 ~~~~iviIDE~d~l~~~------~~~~Ll~~le~~~------------~~~~lIl~~~~~---~kl~~~l~~r~~~i~f~ 194 (456)
..+-|++|||+..-..+ ..+.|+++++... ..+.+|.+++.. ..+.+.+.+.+..+.+.
T Consensus 99 ~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~~~ 178 (272)
T PF12775_consen 99 GKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNILNIP 178 (272)
T ss_dssp SSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEEE--
T ss_pred CcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEEEec
Confidence 34458999999766543 2466677776421 235566665542 34677888899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy12150 195 PLAENTMLTRLQYICEQ 211 (456)
Q Consensus 195 ~~~~~el~~~l~~~~~~ 211 (456)
.|+.+.+..+...++..
T Consensus 179 ~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 179 YPSDESLNTIFSSILQS 195 (272)
T ss_dssp --TCCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhh
Confidence 99999999888877763
No 265
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.32 E-value=3.2e-06 Score=82.58 Aligned_cols=112 Identities=19% Similarity=0.308 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHH-H---HHHH-hh
Q psy12150 52 EVVSVLKKCLSGAD--LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKV-K---TFAQ-QT 124 (456)
Q Consensus 52 ~~~~~l~~~l~~~~--~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l-~---~~~~-~~ 124 (456)
.++...+.++++.. ..+++|+||+|+|||+++.++++++..... .++.++..+. ...+.... . .... ..
T Consensus 167 ~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~--~V~y~t~~~l--~~~l~~~~~~~~~~~~~~~~ 242 (329)
T PRK06835 167 KILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGK--SVIYRTADEL--IEILREIRFNNDKELEEVYD 242 (329)
T ss_pred HHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCC--eEEEEEHHHH--HHHHHHHHhccchhHHHHHH
Confidence 34455556665321 245999999999999999999999865433 4555555331 11111100 0 0000 00
Q ss_pred ccCCCCCCCCCCCcEEEEEcCCCCc--cHHHHHHHHHHHHhcc-CcceEEEEecC
Q psy12150 125 ASGFNQDGKPCPPFKIVILDEADSM--THAAQAALRRTMEKET-KSTRFCLICNY 176 (456)
Q Consensus 125 ~~~~~~~~~~~~~~~iviIDE~d~l--~~~~~~~Ll~~le~~~-~~~~lIl~~~~ 176 (456)
.. .+..+|||||++.. +....+.|..+++... ....+|+++|.
T Consensus 243 ~l---------~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 243 LL---------INCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred Hh---------ccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 00 13359999999654 4555667777776532 22346667774
No 266
>KOG0736|consensus
Probab=98.30 E-value=5.7e-06 Score=86.02 Aligned_cols=169 Identities=18% Similarity=0.222 Sum_probs=103.6
Q ss_pred ccccHHHHHHHHHHHhcC--------C-CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcC--hHHHHH
Q psy12150 47 VIEQQEVVSVLKKCLSGA--------D-LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG--IQVIRD 115 (456)
Q Consensus 47 ivg~~~~~~~l~~~l~~~--------~-~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~--~~~i~~ 115 (456)
..+++..+..+...+.-. . .+.+|++|+||||||++++++++.++- ++++++|.+... ......
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~-----h~~evdc~el~~~s~~~~et 477 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGL-----HLLEVDCYELVAESASHTET 477 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCC-----ceEeccHHHHhhcccchhHH
Confidence 345566665555555311 1 223999999999999999999999855 566776654211 111222
Q ss_pred HHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH--------HHHHHHHHHH-----hccCcceEEEEecCcccccc
Q psy12150 116 KVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--------AQAALRRTME-----KETKSTRFCLICNYVSCIIQ 182 (456)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~--------~~~~Ll~~le-----~~~~~~~lIl~~~~~~kl~~ 182 (456)
++......+.. ..|+ +|++-+.|-+.-+ .+..+...+. ...+.+++|.+++...++.+
T Consensus 478 kl~~~f~~a~~-----~~pa----vifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~ 548 (953)
T KOG0736|consen 478 KLQAIFSRARR-----CSPA----VLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPA 548 (953)
T ss_pred HHHHHHHHHhh-----cCce----EEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCH
Confidence 33333322221 1233 8888888776422 1222222222 13355777777788888888
Q ss_pred cccCCce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q psy12150 183 PLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG 230 (456)
Q Consensus 183 ~l~~r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g 230 (456)
.+++-+. .+.++.+++++..+|++.......+. .+.-+..++..+.|
T Consensus 549 ~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n-~~v~~k~~a~~t~g 596 (953)
T KOG0736|consen 549 DIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLN-QDVNLKQLARKTSG 596 (953)
T ss_pred HHHHhhhhhccCCCCCHHHHHHHHHHHHhccccc-hHHHHHHHHHhcCC
Confidence 8877765 89999999999999999988754422 23334445665554
No 267
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.27 E-value=8.3e-07 Score=79.52 Aligned_cols=48 Identities=25% Similarity=0.387 Sum_probs=33.3
Q ss_pred cccccHHHHHHHHHHHh---cCCCCeEEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 46 DVIEQQEVVSVLKKCLS---GADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~---~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
.++|++..++.+...+. .+..+.++|+|++|+|||++++.+.+.+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999983 2333449999999999999999988877543
No 268
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.26 E-value=2.4e-05 Score=72.58 Aligned_cols=137 Identities=18% Similarity=0.166 Sum_probs=87.5
Q ss_pred HHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCC
Q psy12150 55 SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134 (456)
Q Consensus 55 ~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 134 (456)
..+..++.... .-.++||+|||||.+++.+++.++. .++.+|+++..+...+.+.+..+.+...
T Consensus 23 ~~l~~al~~~~--~~~~~GpagtGKtetik~La~~lG~-----~~~vfnc~~~~~~~~l~ril~G~~~~Ga--------- 86 (231)
T PF12774_consen 23 LTLTQALSLNL--GGALSGPAGTGKTETIKDLARALGR-----FVVVFNCSEQMDYQSLSRILKGLAQSGA--------- 86 (231)
T ss_dssp HHHHHHHCTTT--EEEEESSTTSSHHHHHHHHHHCTT-------EEEEETTSSS-HHHHHHHHHHHHHHT----------
T ss_pred HHHHHHhccCC--CCCCcCCCCCCchhHHHHHHHHhCC-----eEEEecccccccHHHHHHHHHHHhhcCc---------
Confidence 44555554332 2578999999999999999998755 6888999999998888888888776642
Q ss_pred CCCcEEEEEcCCCCccHHHHHHHHHHH-------Hhcc-------------CcceEEEEecC----cccccccccCCceE
Q psy12150 135 CPPFKIVILDEADSMTHAAQAALRRTM-------EKET-------------KSTRFCLICNY----VSCIIQPLTSRCSK 190 (456)
Q Consensus 135 ~~~~~iviIDE~d~l~~~~~~~Ll~~l-------e~~~-------------~~~~lIl~~~~----~~kl~~~l~~r~~~ 190 (456)
-+++||++.|..+....+-+.+ .... +++.+.++.|. +..+++.++.-+..
T Consensus 87 -----W~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRp 161 (231)
T PF12774_consen 87 -----WLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRP 161 (231)
T ss_dssp -----EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEE
T ss_pred -----hhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhhe
Confidence 6899999999987655443332 2111 22333334442 35678888999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHcCCC
Q psy12150 191 FRFKPLAENTMLTRLQYICEQESVM 215 (456)
Q Consensus 191 i~f~~~~~~el~~~l~~~~~~~~~~ 215 (456)
+.+..|+...+.+.+ +...|..
T Consensus 162 vam~~PD~~~I~ei~---L~s~GF~ 183 (231)
T PF12774_consen 162 VAMMVPDLSLIAEIL---LLSQGFK 183 (231)
T ss_dssp EE--S--HHHHHHHH---HHCCCTS
T ss_pred eEEeCCCHHHHHHHH---HHHcCch
Confidence 999888877665543 3445554
No 269
>PRK06921 hypothetical protein; Provisional
Probab=98.23 E-value=1e-05 Score=76.89 Aligned_cols=99 Identities=14% Similarity=0.218 Sum_probs=55.4
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhcCC-ccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEc
Q psy12150 66 LPHFLFYGPPGTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILD 144 (456)
Q Consensus 66 ~~~~Ll~G~~G~GKT~~a~~l~~~l~~~-~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviID 144 (456)
..+++|+|++|+|||+++.++++++... .. .++.+...+ ....+......+....... ....+||||
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~--~v~y~~~~~--l~~~l~~~~~~~~~~~~~~--------~~~dlLiID 184 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGV--PVLYFPFVE--GFGDLKDDFDLLEAKLNRM--------KKVEVLFID 184 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCc--eEEEEEHHH--HHHHHHHHHHHHHHHHHHh--------cCCCEEEEe
Confidence 3459999999999999999999988653 22 455555432 1112221111111110000 133499999
Q ss_pred CCCC-------ccHHHHHHHHHHHHhccC-cceEEEEecC
Q psy12150 145 EADS-------MTHAAQAALRRTMEKETK-STRFCLICNY 176 (456)
Q Consensus 145 E~d~-------l~~~~~~~Ll~~le~~~~-~~~lIl~~~~ 176 (456)
|++. .+.-..+.|..+++.... ...+|+++|.
T Consensus 185 Dl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 185 DLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred ccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 9943 334345566666654321 2335667774
No 270
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.22 E-value=4.6e-06 Score=80.82 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=39.5
Q ss_pred cCCCCccccccc----HHHHHHHHHHHhcC----CCCeEEEECCCCCcHHHHHHHHHHHhcCCcc
Q psy12150 39 YRPKTIDDVIEQ----QEVVSVLKKCLSGA----DLPHFLFYGPPGTGKTSTMIAACHQLFGDMY 95 (456)
Q Consensus 39 y~P~~~~~ivg~----~~~~~~l~~~l~~~----~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~ 95 (456)
+...+|+++... ..+......++.+. ...+++|+|++|+|||+++.++++++.....
T Consensus 121 ~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~ 185 (306)
T PRK08939 121 LLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGV 185 (306)
T ss_pred HhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 335677777643 33444556666532 2345999999999999999999999865444
No 271
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.18 E-value=2.6e-06 Score=75.95 Aligned_cols=93 Identities=24% Similarity=0.375 Sum_probs=51.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC-------cChHHHHHHHHHHHHhhccCCCCCCCCCCCcE
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD-------RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFK 139 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~-------~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 139 (456)
.+++|+||+|+|||+++.++++++..... .+..++..+. ...+...+.+..+. ...
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~--~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~---------------~~d 110 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGY--SVLFITASDLLDELKQSRSDGSYEELLKRLK---------------RVD 110 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH---------------TSS
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCc--ceeEeecCceeccccccccccchhhhcCccc---------------ccc
Confidence 46999999999999999999988765433 3444433220 00001111122221 234
Q ss_pred EEEEcCCCCcc--HHHHHHHHHHHHhccCcceEEEEecC
Q psy12150 140 IVILDEADSMT--HAAQAALRRTMEKETKSTRFCLICNY 176 (456)
Q Consensus 140 iviIDE~d~l~--~~~~~~Ll~~le~~~~~~~lIl~~~~ 176 (456)
++||||+.... ....+.|.++++........|+++|.
T Consensus 111 lLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~ 149 (178)
T PF01695_consen 111 LLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNL 149 (178)
T ss_dssp CEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS
T ss_pred EecccccceeeecccccccchhhhhHhhcccCeEeeCCC
Confidence 99999997654 33445556666543222345667774
No 272
>KOG0482|consensus
Probab=98.17 E-value=0.0001 Score=73.48 Aligned_cols=221 Identities=17% Similarity=0.184 Sum_probs=125.9
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHhcCC---------C---CeEEEECCCCCcHHHHHHHHHHHhcCCccccceE
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGAD---------L---PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERIL 100 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~---------~---~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~ 100 (456)
-++-|+....---+|.|++.+++.|.-.+-+|. . -|+++.|.||+.|+.+.+.+.+-.-. ..+.
T Consensus 330 ~d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapR----gvYT 405 (721)
T KOG0482|consen 330 GDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPR----GVYT 405 (721)
T ss_pred ccHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcc----ccee
Confidence 344444333223378999999988887774432 1 14999999999999999999885322 1222
Q ss_pred EeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-------------Cc
Q psy12150 101 ELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-------------KS 167 (456)
Q Consensus 101 e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-------------~~ 167 (456)
.--+++ +++.-...+++-... ...........++..|.+|||+|.|.....-++.+.||.-. ..
T Consensus 406 TGrGSS--GVGLTAAVmkDpvTg-EM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR 482 (721)
T KOG0482|consen 406 TGRGSS--GVGLTAAVMKDPVTG-EMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNAR 482 (721)
T ss_pred cCCCCC--ccccchhhhcCCCCC-eeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhh
Confidence 222222 222111111110000 00000000011455699999999998877777777776421 23
Q ss_pred ceEEEEecCcc-------------cccccccCCce-------------------------------EEEecCCCHHHHHH
Q psy12150 168 TRFCLICNYVS-------------CIIQPLTSRCS-------------------------------KFRFKPLAENTMLT 203 (456)
Q Consensus 168 ~~lIl~~~~~~-------------kl~~~l~~r~~-------------------------------~i~f~~~~~~el~~ 203 (456)
+.++.++|+.+ .+..+|.||+. ...|.|++.+-++.
T Consensus 483 ~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~ 562 (721)
T KOG0482|consen 483 TSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRR 562 (721)
T ss_pred HHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHH
Confidence 44555555311 23445555532 36777888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH--------------cCCCHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhC
Q psy12150 204 RLQYICEQESVMCDFKALETLVET--------------SGGDMRRAITCLQSCARLK---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 204 ~l~~~~~~~~~~i~~~~l~~L~~~--------------s~gdlr~~~~~L~~~~~~~---~~~~It~~~v~~~~~ 261 (456)
++. .|+...-.++++..+.|... +--.+|.++..|....+.+ -...+..+||.+++.
T Consensus 563 yI~-~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALR 636 (721)
T KOG0482|consen 563 YIS-LAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALR 636 (721)
T ss_pred HHH-HHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 876 45555666777777776632 1235777777776544443 355677777776653
No 273
>PHA00729 NTP-binding motif containing protein
Probab=98.13 E-value=1.2e-05 Score=73.57 Aligned_cols=126 Identities=12% Similarity=0.121 Sum_probs=70.8
Q ss_pred HHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccc--cceEEeeCC---CCcChHHHHHHHHHHHHhhccCCCCC
Q psy12150 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYR--ERILELNAS---DDRGIQVIRDKVKTFAQQTASGFNQD 131 (456)
Q Consensus 57 l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~--~~~~e~n~~---~~~~~~~i~~~l~~~~~~~~~~~~~~ 131 (456)
+.+.+..+.+.+++|+|+||+|||++|.++++.+...... ......+.. .....+.+.+.+.......
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~------- 80 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDND------- 80 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcC-------
Confidence 4455566667679999999999999999999987411100 000000000 0112233334443322110
Q ss_pred CCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccCCceEEEecCCCHHHHHHHHHH
Q psy12150 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207 (456)
Q Consensus 132 ~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~ 207 (456)
....++||||+..-..... + +... + .....+.+++++|+..+.|.+++++++...++.
T Consensus 81 ----~~~dlLIIDd~G~~~~~~~-----w---h~~~--~----~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 81 ----YRIPLIIFDDAGIWLSKYV-----W---YEDY--M----KTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred ----CCCCEEEEeCCchhhcccc-----h---hhhc--c----chHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 0123889999753221100 0 0000 0 122346678889999999999999999888775
No 274
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.10 E-value=1.2e-05 Score=75.77 Aligned_cols=102 Identities=18% Similarity=0.309 Sum_probs=55.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHH--HHHhhccCCCCCCCCCCCcEEEE
Q psy12150 65 DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT--FAQQTASGFNQDGKPCPPFKIVI 142 (456)
Q Consensus 65 ~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~--~~~~~~~~~~~~~~~~~~~~ivi 142 (456)
+..+++|+||||+|||+++.++++++....+ .+..++..+ ....+...... ......... ....++|
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~--sv~f~~~~e--l~~~Lk~~~~~~~~~~~l~~~l-------~~~dlLI 172 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGI--SVLFITAPD--LLSKLKAAFDEGRLEEKLLREL-------KKVDLLI 172 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCC--eEEEEEHHH--HHHHHHHHHhcCchHHHHHHHh-------hcCCEEE
Confidence 3345999999999999999999999874334 455544433 11112111111 000000000 1445999
Q ss_pred EcCCCCcc--HHHHHHHHHHHHhccCcceEEEEecCc
Q psy12150 143 LDEADSMT--HAAQAALRRTMEKETKSTRFCLICNYV 177 (456)
Q Consensus 143 IDE~d~l~--~~~~~~Ll~~le~~~~~~~lIl~~~~~ 177 (456)
|||+.... ....+.+.+.|...-..-..++++|..
T Consensus 173 iDDlG~~~~~~~~~~~~~q~I~~r~~~~~~~~tsN~~ 209 (254)
T COG1484 173 IDDIGYEPFSQEEADLLFQLISRRYESRSLIITSNLS 209 (254)
T ss_pred EecccCccCCHHHHHHHHHHHHHHHhhccceeecCCC
Confidence 99998754 334445555444332222226777753
No 275
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.08 E-value=2.6e-05 Score=70.77 Aligned_cols=119 Identities=24% Similarity=0.364 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHH-------HHHHhh
Q psy12150 52 EVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVK-------TFAQQT 124 (456)
Q Consensus 52 ~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~-------~~~~~~ 124 (456)
+..+.+...+.++. ...++.|+||||||++++.+.+.+..... .++-+.... .....+.+... .+....
T Consensus 5 ~Q~~a~~~~l~~~~-~~~~l~G~aGtGKT~~l~~~~~~~~~~g~--~v~~~apT~-~Aa~~L~~~~~~~a~Ti~~~l~~~ 80 (196)
T PF13604_consen 5 EQREAVRAILTSGD-RVSVLQGPAGTGKTTLLKALAEALEAAGK--RVIGLAPTN-KAAKELREKTGIEAQTIHSFLYRI 80 (196)
T ss_dssp HHHHHHHHHHHCTC-SEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEEESSH-HHHHHHHHHHTS-EEEHHHHTTEE
T ss_pred HHHHHHHHHHhcCC-eEEEEEECCCCCHHHHHHHHHHHHHhCCC--eEEEECCcH-HHHHHHHHhhCcchhhHHHHHhcC
Confidence 34455555665442 34889999999999999999887755432 444443332 22222322211 111110
Q ss_pred ccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecC
Q psy12150 125 ASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176 (456)
Q Consensus 125 ~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~ 176 (456)
.............+.+|||||+..+.......|++.+.. ....+|++++.
T Consensus 81 ~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 81 PNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp CCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred CcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 000000000123556999999999999888888888765 34577788764
No 276
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.08 E-value=0.00013 Score=83.64 Aligned_cols=187 Identities=10% Similarity=0.070 Sum_probs=100.5
Q ss_pred CCcccccccHHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCC-----C--C-----
Q psy12150 42 KTIDDVIEQQEVVSVLKKCLSGAD--LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS-----D--D----- 107 (456)
Q Consensus 42 ~~~~~ivg~~~~~~~l~~~l~~~~--~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~-----~--~----- 107 (456)
..+++++|.+..++++..++.-.. ..-+-|+|++|+||||+|+++++.+...+ ...+ .++.. . .
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F-~g~v-fv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQF-QSSV-FIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcC-CeEE-Eeeccccccchhhcccccc
Confidence 467889999999999998885332 22399999999999999999988875432 1111 11110 0 0
Q ss_pred --cC-hHHHH-HHHHHHHHhhccCCC----CCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCccc
Q psy12150 108 --RG-IQVIR-DKVKTFAQQTASGFN----QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179 (456)
Q Consensus 108 --~~-~~~i~-~~l~~~~~~~~~~~~----~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~k 179 (456)
.. ...+. +.+............ ...+-...+-+||+||++.. ...+.|....+.......+|+++.+..-
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~v 336 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHF 336 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHH
Confidence 00 00011 111111100000000 00000123448999998753 3344444433322344566667665322
Q ss_pred ccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHH
Q psy12150 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCD--FKALETLVETSGGDMRR 234 (456)
Q Consensus 180 l~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~--~~~l~~L~~~s~gdlr~ 234 (456)
+... .-...++...++.++..+++...+-+....-+ .+....+++.++|-+-.
T Consensus 337 l~~~--~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLA 391 (1153)
T PLN03210 337 LRAH--GIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLG 391 (1153)
T ss_pred HHhc--CCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHH
Confidence 2110 11246888899999988888877754332211 23456678888886643
No 277
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.04 E-value=0.00015 Score=71.90 Aligned_cols=132 Identities=11% Similarity=0.130 Sum_probs=79.8
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHhc------cCcceEEEEecCc---ccccccccCC-ceEEEecCCCHHHHHHHHH
Q psy12150 137 PFKIVILDEADSMTHAAQAALRRTMEKE------TKSTRFCLICNYV---SCIIQPLTSR-CSKFRFKPLAENTMLTRLQ 206 (456)
Q Consensus 137 ~~~iviIDE~d~l~~~~~~~Ll~~le~~------~~~~~lIl~~~~~---~kl~~~l~~r-~~~i~f~~~~~~el~~~l~ 206 (456)
.+.|||||++.+-... .+.+.+.|.+- ...--+||.|++. +.+-+++-++ +..+.+...+++..+.++.
T Consensus 148 ~~PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 3569999998765433 22222222211 1112255556543 3455666666 4488999999999999999
Q ss_pred HHHHHcC-C-------------------CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCCHH
Q psy12150 207 YICEQES-V-------------------MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP 266 (456)
Q Consensus 207 ~~~~~~~-~-------------------~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~~~~~ 266 (456)
..+.... . ..+...++..+..-||-+..+-...+++.. | .--.+.|.+++.....+
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks---G-e~p~~Av~~iI~qsa~e 302 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS---G-ESPEEAVEEIISQSASE 302 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc---C-CCHHHHHHHHHHHHHHH
Confidence 9887541 1 135566777888889988888777777654 2 22244555666555444
Q ss_pred HHHHHHc
Q psy12150 267 WIEKLLK 273 (456)
Q Consensus 267 ~i~~l~~ 273 (456)
...-.+.
T Consensus 303 I~k~fl~ 309 (431)
T PF10443_consen 303 IRKMFLL 309 (431)
T ss_pred HHHHHhc
Confidence 4433333
No 278
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.04 E-value=0.00019 Score=71.33 Aligned_cols=95 Identities=18% Similarity=0.249 Sum_probs=54.1
Q ss_pred HHHHhcCCCCeEEEECCCCCcHHHHHHHHHHH--hcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCC
Q psy12150 58 KKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ--LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135 (456)
Q Consensus 58 ~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~--l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 135 (456)
..+++.+ -|+++.||+|||||+++.++... +..+ .......+...+.. ......
T Consensus 203 ~~fve~~--~Nli~lGp~GTGKThla~~l~~~~a~~sG------------~f~T~a~Lf~~L~~---~~lg~v------- 258 (449)
T TIGR02688 203 LPLVEPN--YNLIELGPKGTGKSYIYNNLSPYVILISG------------GTITVAKLFYNIST---RQIGLV------- 258 (449)
T ss_pred HHHHhcC--CcEEEECCCCCCHHHHHHHHhHHHHHHcC------------CcCcHHHHHHHHHH---HHHhhh-------
Confidence 3455543 46999999999999999998766 2111 11111222111111 111000
Q ss_pred CCcEEEEEcCCCCccHH----HHHHHHHHHHhcc---------CcceEEEEecC
Q psy12150 136 PPFKIVILDEADSMTHA----AQAALRRTMEKET---------KSTRFCLICNY 176 (456)
Q Consensus 136 ~~~~iviIDE~d~l~~~----~~~~Ll~~le~~~---------~~~~lIl~~~~ 176 (456)
...++|+|||+..+... ....+..||++.. .+.-++|.+|-
T Consensus 259 ~~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi 312 (449)
T TIGR02688 259 GRWDVVAFDEVATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNV 312 (449)
T ss_pred ccCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEccc
Confidence 24569999999986432 3456677787532 23446777663
No 279
>PRK09183 transposase/IS protein; Provisional
Probab=98.01 E-value=2.1e-05 Score=74.57 Aligned_cols=96 Identities=20% Similarity=0.246 Sum_probs=53.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHH-----HHHHHHHhhccCCCCCCCCCCCcEEE
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD-----KVKTFAQQTASGFNQDGKPCPPFKIV 141 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~-----~l~~~~~~~~~~~~~~~~~~~~~~iv 141 (456)
.+++|+||+|+|||+++.+++........ .+..++..+.. ..+.. .+........ ....++
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~--~v~~~~~~~l~--~~l~~a~~~~~~~~~~~~~~----------~~~dlL 168 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGI--KVRFTTAADLL--LQLSTAQRQGRYKTTLQRGV----------MAPRLL 168 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCC--eEEEEeHHHHH--HHHHHHHHCCcHHHHHHHHh----------cCCCEE
Confidence 35999999999999999999877543222 34444432210 01100 0111111100 122499
Q ss_pred EEcCCCCc--cHHHHHHHHHHHHhccCcceEEEEecC
Q psy12150 142 ILDEADSM--THAAQAALRRTMEKETKSTRFCLICNY 176 (456)
Q Consensus 142 iIDE~d~l--~~~~~~~Ll~~le~~~~~~~lIl~~~~ 176 (456)
||||++.. .....+.|.++++.......+|+++|.
T Consensus 169 iiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~ 205 (259)
T PRK09183 169 IIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNL 205 (259)
T ss_pred EEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCC
Confidence 99999875 344555677777543222346677774
No 280
>KOG2543|consensus
Probab=97.96 E-value=0.0044 Score=60.27 Aligned_cols=199 Identities=18% Similarity=0.118 Sum_probs=108.9
Q ss_pred ccccccHHHHHHHHHHHhcC--CCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcCh-----------
Q psy12150 45 DDVIEQQEVVSVLKKCLSGA--DLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI----------- 110 (456)
Q Consensus 45 ~~ivg~~~~~~~l~~~l~~~--~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~----------- 110 (456)
..+.+++..++.+...+-.. ..|. +.|||..|||||.+++.+.+..+-+ .+.+|+-+....
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~-----~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE-----NVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc-----ceeeehHHhccHHHHHHHHHHHh
Confidence 35678899999999888543 3455 7999999999999999999987432 222222221110
Q ss_pred --------------HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH---HHHHHHHHHHh-ccCcceEEE
Q psy12150 111 --------------QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA---AQAALRRTMEK-ETKSTRFCL 172 (456)
Q Consensus 111 --------------~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~---~~~~Ll~~le~-~~~~~~lIl 172 (456)
+.+.+.+..+.+....... ...-++|+|++|.+.+- -...|.+.-+- ..+.+++++
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~------d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNR------DQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhcc------CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEE
Confidence 1122222222221111100 12348999999998642 23333332111 112566666
Q ss_pred EecCcccccccccCC--ceEEEecCCCHHHHHHHHHHHHH-HcCCCCCHHHHHHHH----HHcCCCHHHHHHHHHHH-HH
Q psy12150 173 ICNYVSCIIQPLTSR--CSKFRFKPLAENTMLTRLQYICE-QESVMCDFKALETLV----ETSGGDMRRAITCLQSC-AR 244 (456)
Q Consensus 173 ~~~~~~kl~~~l~~r--~~~i~f~~~~~~el~~~l~~~~~-~~~~~i~~~~l~~L~----~~s~gdlr~~~~~L~~~-~~ 244 (456)
+.....+....=.+. ...++|+.++.+++..++.+--- +....+-..-+..++ ..| +|++.+...+..+ -.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~c-rd~~eL~~~~~~~wpk 233 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMAC-RDVNELRSLISLAWPK 233 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHh
Confidence 665444433210111 23799999999999888764221 111111122233333 344 4999888888654 44
Q ss_pred hh---CCCCCCHHH
Q psy12150 245 LK---GGEGIVNED 255 (456)
Q Consensus 245 ~~---~~~~It~~~ 255 (456)
|. .++.|++.+
T Consensus 234 y~epi~~~~i~~~d 247 (438)
T KOG2543|consen 234 YCEPITKGKIDPTD 247 (438)
T ss_pred hccccccCCCChhH
Confidence 54 245566555
No 281
>PHA02774 E1; Provisional
Probab=97.95 E-value=7.9e-05 Score=76.61 Aligned_cols=137 Identities=23% Similarity=0.337 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCC
Q psy12150 52 EVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ 130 (456)
Q Consensus 52 ~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~ 130 (456)
..+..|+.++++....+ ++|+||||+|||+++..+++.+.+.. +..+|...... +.
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~v----i~fvN~~s~Fw-------Lq------------ 475 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKV----ISFVNSKSHFW-------LQ------------ 475 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCE----EEEEECccccc-------cc------------
Confidence 34567788887543334 99999999999999999999885432 23345422111 00
Q ss_pred CCCCCCCcEEEEEcCCCCccHH-HHHHHHHHHHhcc-------------CcceEEEEecCc---ccccccccCCceEEEe
Q psy12150 131 DGKPCPPFKIVILDEADSMTHA-AQAALRRTMEKET-------------KSTRFCLICNYV---SCIIQPLTSRCSKFRF 193 (456)
Q Consensus 131 ~~~~~~~~~iviIDE~d~l~~~-~~~~Ll~~le~~~-------------~~~~lIl~~~~~---~kl~~~l~~r~~~i~f 193 (456)
+..+.+++++||+-.-..+ ....|+.+|+..+ ..+.+|+++|-. ..-.+.|.+|...++|
T Consensus 476 ---pl~d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~~f~F 552 (613)
T PHA02774 476 ---PLADAKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRITVFEF 552 (613)
T ss_pred ---hhccCCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhEEEEEC
Confidence 1125569999999332222 2335666665431 124567777732 2335668889888777
Q ss_pred cC-------------CCHHHHHHHHHHHHHHcCC
Q psy12150 194 KP-------------LAENTMLTRLQYICEQESV 214 (456)
Q Consensus 194 ~~-------------~~~~el~~~l~~~~~~~~~ 214 (456)
+. ++....+.+.++...+-.+
T Consensus 553 ~n~~P~d~~G~P~f~ltd~~WKsFF~rlw~~LdL 586 (613)
T PHA02774 553 PNPFPLDENGNPVFELTDANWKSFFERLWSQLDL 586 (613)
T ss_pred CCCCCcCCCCCEeeeeCchhHHHHHHHHHHHcCC
Confidence 53 3445566666666555433
No 282
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.95 E-value=9.5e-05 Score=82.47 Aligned_cols=156 Identities=16% Similarity=0.233 Sum_probs=101.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCC----CCCCcEEEEE
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK----PCPPFKIVIL 143 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~----~~~~~~iviI 143 (456)
++|+.||..+|||+.+..+++..+. .++.+|-.... ++++.+..+............+ ......-||+
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tgh-----kfVRINNHEHT---dlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVL 961 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGH-----KFVRINNHEHT---DLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVL 961 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCc-----cEEEecCcccc---hHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEe
Confidence 4999999999999999999998765 45555554422 2223333322211100000000 0012237999
Q ss_pred cCCCCccHHHHHHHHHHHHhc--------------cCcceEEEEecCc-------ccccccccCCceEEEecCCCHHHHH
Q psy12150 144 DEADSMTHAAQAALRRTMEKE--------------TKSTRFCLICNYV-------SCIIQPLTSRCSKFRFKPLAENTML 202 (456)
Q Consensus 144 DE~d~l~~~~~~~Ll~~le~~--------------~~~~~lIl~~~~~-------~kl~~~l~~r~~~i~f~~~~~~el~ 202 (456)
||..-.+.+..++|.+.+++. .++. .+|++.++ +.+-++++.|+..++|...+++++.
T Consensus 962 DELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F-~lFATQNppg~YgGRK~LSrAFRNRFlE~hFddipedEle 1040 (4600)
T COG5271 962 DELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNF-RLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPEDELE 1040 (4600)
T ss_pred eccccCcHHHHHHHHHhhccccceecCCcceeeccCCCe-eEEeecCCCccccchHHHHHHHHhhhHhhhcccCcHHHHH
Confidence 999998999999999998752 2222 44555443 3467889999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Q psy12150 203 TRLQYICEQESVMCDFKALETLVETSGG-DMRRAIT 237 (456)
Q Consensus 203 ~~l~~~~~~~~~~i~~~~l~~L~~~s~g-dlr~~~~ 237 (456)
.+|..+ .++.+.....+++...| .+|+-.+
T Consensus 1041 ~ILh~r-----c~iapSyakKiVeVyr~Ls~rRs~~ 1071 (4600)
T COG5271 1041 EILHGR-----CEIAPSYAKKIVEVYRGLSSRRSIN 1071 (4600)
T ss_pred HHHhcc-----CccCHHHHHHHHHHHHHhhhhhhHH
Confidence 999855 46788877777775543 4454444
No 283
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.93 E-value=0.00092 Score=65.62 Aligned_cols=55 Identities=24% Similarity=0.276 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCC--CCe-EEEECCCCCcHHHHHHHHHHHhcCC-ccccceEEeeCCC
Q psy12150 52 EVVSVLKKCLSGAD--LPH-FLFYGPPGTGKTSTMIAACHQLFGD-MYRERILELNASD 106 (456)
Q Consensus 52 ~~~~~l~~~l~~~~--~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~-~~~~~~~e~n~~~ 106 (456)
...+.|.+.+.+.. .+. +.|+|+=|+|||++++.+.+.+... .....++++|+..
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~ 61 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWE 61 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEcccc
Confidence 34566777777653 333 9999999999999999999988765 2234556666654
No 284
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.92 E-value=2.2e-05 Score=69.24 Aligned_cols=65 Identities=9% Similarity=0.235 Sum_probs=36.2
Q ss_pred CcEEEEEcCCCCcc---HHHHHHHHHHHHhccCcceEEEEecC-cccccccccCC--ceEEEecCCCHHHHHH
Q psy12150 137 PFKIVILDEADSMT---HAAQAALRRTMEKETKSTRFCLICNY-VSCIIQPLTSR--CSKFRFKPLAENTMLT 203 (456)
Q Consensus 137 ~~~iviIDE~d~l~---~~~~~~Ll~~le~~~~~~~lIl~~~~-~~kl~~~l~~r--~~~i~f~~~~~~el~~ 203 (456)
...+++|||+..|- +...+++.+.|+. ...++..+-.. ...+.+.+.+| +..++..+-+.+.+..
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~s--~~~vi~vv~~~~~~~~l~~i~~~~~~~i~~vt~~NRd~l~~ 165 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLDS--NKPVIGVVHKRSDNPFLEEIKRRPDVKIFEVTEENRDALPE 165 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHCT--TSEEEEE--SS--SCCHHHHHTTTTSEEEE--TTTCCCHHH
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHcC--CCcEEEEEecCCCcHHHHHHHhCCCcEEEEeChhHHhhHhh
Confidence 33599999998873 4557778888872 22333222223 34577788887 6678887777666543
No 285
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.92 E-value=5.2e-05 Score=79.90 Aligned_cols=136 Identities=21% Similarity=0.266 Sum_probs=79.0
Q ss_pred cccccHHHHHHHHHHHhcCC---------C---CeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHH-
Q psy12150 46 DVIEQQEVVSVLKKCLSGAD---------L---PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQV- 112 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~~~~---------~---~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~- 112 (456)
.+.|++.++..+.=.+-+|. . -|+||.|.||+|||.+.+.+.+..-.. -+...-++...+...
T Consensus 287 sIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~----vytsgkgss~~GLTAa 362 (682)
T COG1241 287 SIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRG----VYTSGKGSSAAGLTAA 362 (682)
T ss_pred cccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCce----EEEccccccccCceeE
Confidence 56777777766655543221 1 259999999999999999999864221 222222222111110
Q ss_pred -HHHHH-HHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-------------CcceEEEEecCc
Q psy12150 113 -IRDKV-KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-------------KSTRFCLICNYV 177 (456)
Q Consensus 113 -i~~~l-~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-------------~~~~lIl~~~~~ 177 (456)
.++.. .++. ...+....++..|++|||+|.|......++.+.||... ..+-++.++|+.
T Consensus 363 v~rd~~tge~~------LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~ 436 (682)
T COG1241 363 VVRDKVTGEWV------LEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPK 436 (682)
T ss_pred EEEccCCCeEE------EeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCC
Confidence 11110 0000 00000011456699999999999999999999998642 223355566643
Q ss_pred c-------------cccccccCCceEE
Q psy12150 178 S-------------CIIQPLTSRCSKF 191 (456)
Q Consensus 178 ~-------------kl~~~l~~r~~~i 191 (456)
. .+.++|.||+..+
T Consensus 437 ~Gryd~~~~~~enI~l~~~lLSRFDLi 463 (682)
T COG1241 437 FGRYDPKKTVAENINLPAPLLSRFDLI 463 (682)
T ss_pred CCcCCCCCCHHHhcCCChhHHhhCCee
Confidence 2 2467789998743
No 286
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.91 E-value=0.001 Score=67.10 Aligned_cols=204 Identities=19% Similarity=0.189 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcCh-HHHHHHHHHHHHhhccCCCC
Q psy12150 52 EVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI-QVIRDKVKTFAQQTASGFNQ 130 (456)
Q Consensus 52 ~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~-~~i~~~l~~~~~~~~~~~~~ 130 (456)
.....+.+.+..... .++++||.+|||||+++.+.+.+... .++++..+.... ....+....+......
T Consensus 24 ~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~~~~~~~~~~---- 93 (398)
T COG1373 24 KLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLLRAYIELKER---- 93 (398)
T ss_pred hhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHHHHHHHhhcc----
Confidence 334445555554433 69999999999999998888876442 455555543222 2223333333322111
Q ss_pred CCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecC---cccccccccCCceEEEecCCCHHHHHH----
Q psy12150 131 DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY---VSCIIQPLTSRCSKFRFKPLAENTMLT---- 203 (456)
Q Consensus 131 ~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~---~~kl~~~l~~r~~~i~f~~~~~~el~~---- 203 (456)
++..+|+||++.+.. -...+..+.+.... -++|.+++. ..+....+..|...+++.|++-.|...
T Consensus 94 ------~~~yifLDEIq~v~~-W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~ 165 (398)
T COG1373 94 ------EKSYIFLDEIQNVPD-WERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGE 165 (398)
T ss_pred ------CCceEEEecccCchh-HHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccc
Confidence 223899999998854 23334444443332 233333332 245566788998999999999998865
Q ss_pred ---------HHHHHHHHcCCCC----CH------HHHH-----HHHHHcC-CCHHHHHHHHHHHHHhhCCCCCCHHHHHH
Q psy12150 204 ---------RLQYICEQESVMC----DF------KALE-----TLVETSG-GDMRRAITCLQSCARLKGGEGIVNEDVLE 258 (456)
Q Consensus 204 ---------~l~~~~~~~~~~i----~~------~~l~-----~L~~~s~-gdlr~~~~~L~~~~~~~~~~~It~~~v~~ 258 (456)
.+.......|.+- +. +.++ -++++.+ -+...+...+..++.. .+..++...+..
T Consensus 166 ~~~~~~~~~~f~~Yl~~GGfP~~v~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~k~i~~~l~~~-~g~~~s~~~la~ 244 (398)
T COG1373 166 EIEPSKLELLFEKYLETGGFPESVKADLSEKKLKEYLDTILKRDIIERGKIENADLMKRILRFLASN-IGSPISYSSLAR 244 (398)
T ss_pred ccchhHHHHHHHHHHHhCCCcHHHhCcchhhHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHhh-cCCccCHHHHHH
Confidence 3445555444321 11 1111 1222222 1332333333333332 356777777777
Q ss_pred HhCCCCHHHHHHHHcc
Q psy12150 259 VTGVIPKPWIEKLLKV 274 (456)
Q Consensus 259 ~~~~~~~~~i~~l~~~ 274 (456)
.++......+...++.
T Consensus 245 ~l~~is~~Ti~~Yl~~ 260 (398)
T COG1373 245 ELKGISKDTIRKYLSY 260 (398)
T ss_pred HHhccchHHHHHHHHH
Confidence 7742335556655555
No 287
>KOG0741|consensus
Probab=97.88 E-value=0.00036 Score=70.15 Aligned_cols=153 Identities=15% Similarity=0.242 Sum_probs=85.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEe-eCCCCcCh------HHHHHHHHHHHHhhccCCCCCCCCCCCcEE
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILEL-NASDDRGI------QVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~-n~~~~~~~------~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i 140 (456)
.+||+||||+|||++|-.++..-.. +++.+ ++.+..+. ..+....++.... +-.+
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~F-----PFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS-------------~lsi 601 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDF-----PFVKIISPEDMIGLSESAKCAHIKKIFEDAYKS-------------PLSI 601 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCC-----CeEEEeChHHccCccHHHHHHHHHHHHHHhhcC-------------cceE
Confidence 3999999999999999999986422 44432 33332222 2233333333322 2339
Q ss_pred EEEcCCCCccH----------HHHHHHHHHHHhccCc--ceEEEEecCccccccc--ccCCce-EEEecCCCH-HHHHHH
Q psy12150 141 VILDEADSMTH----------AAQAALRRTMEKETKS--TRFCLICNYVSCIIQP--LTSRCS-KFRFKPLAE-NTMLTR 204 (456)
Q Consensus 141 viIDE~d~l~~----------~~~~~Ll~~le~~~~~--~~lIl~~~~~~kl~~~--l~~r~~-~i~f~~~~~-~el~~~ 204 (456)
|++|++++|.. ...++|+-.+.+.|+. -.+|+++.....+... +..-+. .++.+.++. +++.+.
T Consensus 602 ivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~v 681 (744)
T KOG0741|consen 602 IVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEV 681 (744)
T ss_pred EEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHH
Confidence 99999988742 2355666666665544 4566766654433322 122222 677777765 666665
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCC-----CHHHHHHHHHHHH
Q psy12150 205 LQYICEQESVMCDFKALETLVETSGG-----DMRRAITCLQSCA 243 (456)
Q Consensus 205 l~~~~~~~~~~i~~~~l~~L~~~s~g-----dlr~~~~~L~~~~ 243 (456)
+... ..++++..+.+++.-.+ -+.+++..++.+.
T Consensus 682 l~~~-----n~fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a~ 720 (744)
T KOG0741|consen 682 LEEL-----NIFSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMAR 720 (744)
T ss_pred HHHc-----cCCCcchhHHHHHHHhccccchhHHHHHHHHHHHh
Confidence 5532 23555555555543322 2555666665544
No 288
>KOG0478|consensus
Probab=97.87 E-value=0.00026 Score=73.05 Aligned_cols=140 Identities=21% Similarity=0.237 Sum_probs=79.7
Q ss_pred cccccHHHHHHHHHHHh---------cCCCC---eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChH--
Q psy12150 46 DVIEQQEVVSVLKKCLS---------GADLP---HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQ-- 111 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~---------~~~~~---~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~-- 111 (456)
+|.|++.++.-+.-.+- ++++. |+||+|.||+|||.+.+.+++-+-.+.+ ..--.+...+..
T Consensus 430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~y----TSGkGsSavGLTay 505 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVY----TSGKGSSAVGLTAY 505 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCccee----ecCCccchhcceee
Confidence 34556666555443332 22333 4999999999999999999986533211 111111100000
Q ss_pred -----HHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhc-------------cCcceEEEE
Q psy12150 112 -----VIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE-------------TKSTRFCLI 173 (456)
Q Consensus 112 -----~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~-------------~~~~~lIl~ 173 (456)
+-++.+. +..... .++..+.+|||+|.|+......|.+.||.- +..+-++.+
T Consensus 506 Vtrd~dtkqlVL---esGALV-------LSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAa 575 (804)
T KOG0478|consen 506 VTKDPDTRQLVL---ESGALV-------LSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAA 575 (804)
T ss_pred EEecCccceeee---ecCcEE-------EcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeee
Confidence 0000000 000000 135559999999999999999999999853 233456666
Q ss_pred ecCc------c-------cccccccCCceE--EEecCCCHH
Q psy12150 174 CNYV------S-------CIIQPLTSRCSK--FRFKPLAEN 199 (456)
Q Consensus 174 ~~~~------~-------kl~~~l~~r~~~--i~f~~~~~~ 199 (456)
+|+. . .+.++|.+|+.. +-+.++++.
T Consensus 576 ANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 576 ANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred eccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchh
Confidence 6631 1 246789999883 344666554
No 289
>PHA02624 large T antigen; Provisional
Probab=97.85 E-value=7.5e-05 Score=77.10 Aligned_cols=116 Identities=21% Similarity=0.238 Sum_probs=68.7
Q ss_pred HHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCC
Q psy12150 55 SVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133 (456)
Q Consensus 55 ~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 133 (456)
..++.++++-.-.+ ++|+||||+|||+++.++++.+.+ .++.+|.+.....-.+ +..
T Consensus 419 ~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G-----~vlsVNsPt~ks~FwL--------~pl--------- 476 (647)
T PHA02624 419 DILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCGG-----KSLNVNCPPDKLNFEL--------GCA--------- 476 (647)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcCC-----eEEEeeCCcchhHHHh--------hhh---------
Confidence 34455555443334 999999999999999999999865 3455665542221111 010
Q ss_pred CCCCcEEEEEcCCCCccH-----------HHHHHHHHHHHhc-c-------------CcceEEEEecCcccccccccCCc
Q psy12150 134 PCPPFKIVILDEADSMTH-----------AAQAALRRTMEKE-T-------------KSTRFCLICNYVSCIIQPLTSRC 188 (456)
Q Consensus 134 ~~~~~~iviIDE~d~l~~-----------~~~~~Ll~~le~~-~-------------~~~~lIl~~~~~~kl~~~l~~r~ 188 (456)
.+.+++++|++-.-.. +...-|+.+|+.. + .-+.+|+++|.+ .+...++-|+
T Consensus 477 --~D~~~~l~dD~t~~~~~~~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ney-~iP~T~~~Rf 553 (647)
T PHA02624 477 --IDQFMVVFEDVKGQPADNKDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNEY-LIPQTVKARF 553 (647)
T ss_pred --hhceEEEeeeccccccccccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecCc-ccchhHHHHH
Confidence 2556999999853222 1235567777643 1 113355566543 5566677776
Q ss_pred e-EEEecC
Q psy12150 189 S-KFRFKP 195 (456)
Q Consensus 189 ~-~i~f~~ 195 (456)
. .+.|.+
T Consensus 554 ~~~~~F~~ 561 (647)
T PHA02624 554 AKVLDFKP 561 (647)
T ss_pred HHhccccc
Confidence 5 666644
No 290
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.85 E-value=3.8e-05 Score=62.42 Aligned_cols=72 Identities=21% Similarity=0.413 Sum_probs=44.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCc---cccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDM---YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~---~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE 145 (456)
++||||||+|||++++.+++.+.... ....+...+..+. ....+ .+..++++||
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~--------~w~gY---------------~~q~vvi~DD 57 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDK--------FWDGY---------------QGQPVVIIDD 57 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccc--------hhhcc---------------CCCcEEEEee
Confidence 47999999999999999998876421 1112222222220 00100 1334999999
Q ss_pred CCCccHH----HHHHHHHHHHh
Q psy12150 146 ADSMTHA----AQAALRRTMEK 163 (456)
Q Consensus 146 ~d~l~~~----~~~~Ll~~le~ 163 (456)
+...... ....+++++..
T Consensus 58 ~~~~~~~~~~~~~~~l~~l~s~ 79 (107)
T PF00910_consen 58 FGQDNDGYNYSDESELIRLISS 79 (107)
T ss_pred cCccccccchHHHHHHHHHHhc
Confidence 9887654 45556666654
No 291
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.79 E-value=1.5e-05 Score=78.47 Aligned_cols=134 Identities=22% Similarity=0.240 Sum_probs=68.6
Q ss_pred chhccCCCCcccccccHHHHHHHHHHHhcCC------------CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEe
Q psy12150 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGAD------------LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILEL 102 (456)
Q Consensus 35 w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~------------~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~ 102 (456)
+++-..| .+.|++.++..+.=.+-++. .-|+||.|.||+|||.+.+.+++-.. ..+..
T Consensus 18 l~~s~aP----~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~p------r~v~~ 87 (331)
T PF00493_consen 18 LANSIAP----SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAP------RSVYT 87 (331)
T ss_dssp CHHHCSS----TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-S------SEEEE
T ss_pred HHHHhCC----cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCC------ceEEE
Confidence 3445555 46787776655433322111 12599999999999999987754321 12222
Q ss_pred eCCCCcChHH----HHH------HHH-HHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc------
Q psy12150 103 NASDDRGIQV----IRD------KVK-TFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET------ 165 (456)
Q Consensus 103 n~~~~~~~~~----i~~------~l~-~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~------ 165 (456)
++......+- .++ .++ ...-. ++..|++|||++.+..+....|.+.||...
T Consensus 88 ~g~~~s~~gLta~~~~d~~~~~~~leaGalvl------------ad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~ka 155 (331)
T PF00493_consen 88 SGKGSSAAGLTASVSRDPVTGEWVLEAGALVL------------ADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKA 155 (331)
T ss_dssp ECCGSTCCCCCEEECCCGGTSSECEEE-HHHH------------CTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTS
T ss_pred CCCCcccCCccceeccccccceeEEeCCchhc------------ccCceeeecccccccchHHHHHHHHHHcCeeccchh
Confidence 2211100000 000 000 00001 355599999999999999999999998632
Q ss_pred -------CcceEEEEecCcc-------------cccccccCCceE
Q psy12150 166 -------KSTRFCLICNYVS-------------CIIQPLTSRCSK 190 (456)
Q Consensus 166 -------~~~~lIl~~~~~~-------------kl~~~l~~r~~~ 190 (456)
..+.++.++|+.. .+.++|.+|+..
T Consensus 156 gi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDL 200 (331)
T PF00493_consen 156 GIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDL 200 (331)
T ss_dssp SSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SE
T ss_pred hhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCE
Confidence 3355666776432 245678888873
No 292
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.79 E-value=0.00073 Score=71.79 Aligned_cols=181 Identities=18% Similarity=0.211 Sum_probs=106.8
Q ss_pred CCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHH
Q psy12150 41 PKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120 (456)
Q Consensus 41 P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~ 120 (456)
|......+-++...+.+.... ...-++|+-|.|+||||++-.++. ...+......+.++.++.....-+...+...
T Consensus 15 P~~~~~~v~R~rL~~~L~~~~---~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 15 PVRPDNYVVRPRLLDRLRRAN---DYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred CCCcccccccHHHHHHHhcCC---CceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCccCCHHHHHHHHHHHH
Confidence 444455566665555444332 233499999999999999999987 4444444445555555532221111111111
Q ss_pred HH--------------------------hhccCCCCCCCCCCCcEEEEEcCCCCccHHHH-HHHHHHHHhccCcceEEEE
Q psy12150 121 AQ--------------------------QTASGFNQDGKPCPPFKIVILDEADSMTHAAQ-AALRRTMEKETKSTRFCLI 173 (456)
Q Consensus 121 ~~--------------------------~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~-~~Ll~~le~~~~~~~lIl~ 173 (456)
.. ..........+|. .+|+||.+.++.... ..+...++..|+++.+|++
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl----~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~ 166 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPL----YLVLDDYHLISDPALHEALRFLLKHAPENLTLVVT 166 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCce----EEEeccccccCcccHHHHHHHHHHhCCCCeEEEEE
Confidence 10 0000001112233 899999999987654 5566677778889999998
Q ss_pred ecCcccc-cccccCCceEEEe----cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Q psy12150 174 CNYVSCI-IQPLTSRCSKFRF----KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDM 232 (456)
Q Consensus 174 ~~~~~kl-~~~l~~r~~~i~f----~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdl 232 (456)
+.....+ ...++=|...+++ -.++.+|..+++... .+..++...++.|...++|=+
T Consensus 167 SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~---~~l~Ld~~~~~~L~~~teGW~ 227 (894)
T COG2909 167 SRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDR---GSLPLDAADLKALYDRTEGWA 227 (894)
T ss_pred eccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHc---CCCCCChHHHHHHHhhcccHH
Confidence 8765443 2233333332222 135677777777644 347899999999999998844
No 293
>PRK04296 thymidine kinase; Provisional
Probab=97.76 E-value=0.00013 Score=65.86 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.+++||+|+|||+++..++..+..
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~ 28 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEE 28 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH
Confidence 789999999999999888887643
No 294
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.69 E-value=0.0014 Score=63.74 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=38.9
Q ss_pred EEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Q psy12150 190 KFRFKPLAENTMLTRLQYICEQESV---MCDFKALETLVETSGGDMRRAIT 237 (456)
Q Consensus 190 ~i~f~~~~~~el~~~l~~~~~~~~~---~i~~~~l~~L~~~s~gdlr~~~~ 237 (456)
.+++++++.+|.+.+++......-+ ..++...+.+...++||+|++.+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~k 308 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELEK 308 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhcc
Confidence 7899999999999999988775433 35677778888888999998753
No 295
>PRK10536 hypothetical protein; Provisional
Probab=97.69 E-value=0.00045 Score=64.50 Aligned_cols=125 Identities=16% Similarity=0.134 Sum_probs=69.7
Q ss_pred cccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHH-hcCCccccceEEeeCCCC-------cCh-----
Q psy12150 44 IDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ-LFGDMYRERILELNASDD-------RGI----- 110 (456)
Q Consensus 44 ~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~-l~~~~~~~~~~e~n~~~~-------~~~----- 110 (456)
+..+.+.+.....+..++... ..+++.||+|||||+++.+++.. +..+.+ ..+.+.-+.. ...
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~--~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDV--DRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred CccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCe--eEEEEeCCCCCchhhhCcCCCCHHH
Confidence 344566666666777777653 36999999999999999999885 323222 2222211110 000
Q ss_pred ------HHHHHHHHHHHHh-----hc---cC---C----CCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcce
Q psy12150 111 ------QVIRDKVKTFAQQ-----TA---SG---F----NQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTR 169 (456)
Q Consensus 111 ------~~i~~~l~~~~~~-----~~---~~---~----~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~ 169 (456)
..+.+.+..+... .. .+ . ...|++. +..+||+||++.++......++..+ ..++.
T Consensus 130 K~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl-~~~~vIvDEaqn~~~~~~k~~ltR~---g~~sk 205 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTF-ENAVVILDEAQNVTAAQMKMFLTRL---GENVT 205 (262)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcc-cCCEEEEechhcCCHHHHHHHHhhc---CCCCE
Confidence 1122222221110 00 00 0 0112332 3459999999999997666665444 56778
Q ss_pred EEEEecC
Q psy12150 170 FCLICNY 176 (456)
Q Consensus 170 lIl~~~~ 176 (456)
+|++++.
T Consensus 206 ~v~~GD~ 212 (262)
T PRK10536 206 VIVNGDI 212 (262)
T ss_pred EEEeCCh
Confidence 8887763
No 296
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.68 E-value=0.00011 Score=60.72 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=38.8
Q ss_pred cccccHHHHHH----HHHHHhcCCCCe---EEEECCCCCcHHHHHHHHHHHhcCCccccceE
Q psy12150 46 DVIEQQEVVSV----LKKCLSGADLPH---FLFYGPPGTGKTSTMIAACHQLFGDMYRERIL 100 (456)
Q Consensus 46 ~ivg~~~~~~~----l~~~l~~~~~~~---~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~ 100 (456)
.+.||.-+.+. |...+.+..+.. +-|+|++|||||.+++.+++.+.......+++
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V 87 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFV 87 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCce
Confidence 57788755544 455555443322 67999999999999999999987655444444
No 297
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.00034 Score=69.83 Aligned_cols=138 Identities=14% Similarity=0.222 Sum_probs=70.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC----CccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCC-CC--------CCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG----DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ-DG--------KPC 135 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~----~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~--------~~~ 135 (456)
++|+||+|+||||++..++..+.. ......++..|+... ... +.+..+.......... .. ...
T Consensus 177 i~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~---aa~-eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 177 FILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI---GAK-KQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH---HHH-HHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 999999999999999999987642 122333444443321 111 1122222211000000 00 001
Q ss_pred CCcEEEEEcCCCCccHH--HHHHHHHHHHhcc--CcceEEEEecCcccccccccCC-----ceEEEecCCCHHHHHHHHH
Q psy12150 136 PPFKIVILDEADSMTHA--AQAALRRTMEKET--KSTRFCLICNYVSCIIQPLTSR-----CSKFRFKPLAENTMLTRLQ 206 (456)
Q Consensus 136 ~~~~iviIDE~d~l~~~--~~~~Ll~~le~~~--~~~~lIl~~~~~~kl~~~l~~r-----~~~i~f~~~~~~el~~~l~ 206 (456)
.++.+|+||.+..+..+ ....+.++++... ..+.+|+.++....-...+.++ ...+-|..+++..-.--+-
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDet~~~G~~l 332 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCVGNLI 332 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccCCCcchHHH
Confidence 35679999999988754 3355666666432 2466666665432222122122 2256666666655444333
Q ss_pred HHHH
Q psy12150 207 YICE 210 (456)
Q Consensus 207 ~~~~ 210 (456)
..+.
T Consensus 333 ~~~~ 336 (388)
T PRK12723 333 SLIY 336 (388)
T ss_pred HHHH
Confidence 3333
No 298
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=97.64 E-value=0.00056 Score=58.62 Aligned_cols=123 Identities=17% Similarity=0.247 Sum_probs=85.5
Q ss_pred CCHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12150 251 IVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF----DQFHDIVMLASSLSDKQKALFKALE 323 (456)
Q Consensus 251 It~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~~~~~~~~~~~~~l~~~~~ 323 (456)
||.++|.++++.+..+.+++++++ +|..+++..+++++.+|.+|..++ +.||++++....
T Consensus 1 It~e~V~~~lG~v~~~~i~~l~~ai~~~d~~~~l~~~~~l~~~G~d~~~~l~~L~~~~R~ll~~k~~------------- 67 (143)
T PF12169_consen 1 ITAEDVREILGLVDEEQIFELLDAILEGDAAEALELLNELLEQGKDPKQFLDDLIEYLRDLLLYKIT------------- 67 (143)
T ss_dssp B-HHHHHHHHTHTSTHHHHHHHHHHHTT-HHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHTTS-------------
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhC-------------
Confidence 689999999999999999999999 999999999999999999998876 555665511100
Q ss_pred HHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy12150 324 TLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFH 403 (456)
Q Consensus 324 ~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~ 403 (456)
. +. ..... .+.. -...+.
T Consensus 68 --------------------~----------~~-----------------------------~~~~~--~~~~-~~~~~~ 85 (143)
T PF12169_consen 68 --------------------G----------DK-----------------------------SNLLE--LSEE-EEEKLK 85 (143)
T ss_dssp --------------------G----------GG-----------------------------S-SG----CTT-THHHHH
T ss_pred --------------------C----------ch-----------------------------hhccc--CCHH-HHHHHH
Confidence 0 00 00000 0111 112222
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHH
Q psy12150 404 DIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~ 451 (456)
+... .++.....++++.+.+++.+++.+.++++-+.-.+-.++..
T Consensus 86 ~~a~---~~~~~~l~~~~~~l~~~~~~lr~s~~pr~~lE~~llrl~~~ 130 (143)
T PF12169_consen 86 ELAK---KFSPERLQRILQILLEAENELRYSSNPRILLEMALLRLCQL 130 (143)
T ss_dssp HHHH---HS-HHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHT
T ss_pred HHHH---cCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence 2233 46888889999999999999999999999999888888774
No 299
>KOG0480|consensus
Probab=97.63 E-value=0.0015 Score=67.25 Aligned_cols=109 Identities=24% Similarity=0.282 Sum_probs=63.3
Q ss_pred ccccccHHHHHHHHHHHhcCC------------CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHH
Q psy12150 45 DDVIEQQEVVSVLKKCLSGAD------------LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQV 112 (456)
Q Consensus 45 ~~ivg~~~~~~~l~~~l~~~~------------~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~ 112 (456)
-.+.|++.++.-+.-.+-+|. -.|+++.|.||+||+.+.++.+.-+-. .-+..-+++...+...
T Consensus 345 PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR----~vYtsGkaSSaAGLTa 420 (764)
T KOG0480|consen 345 PSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPR----SVYTSGKASSAAGLTA 420 (764)
T ss_pred ccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCc----ceEecCcccccccceE
Confidence 356688887766655553321 135999999999999999998875321 1222223332111100
Q ss_pred --HHHH-HHHHH-HhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhc
Q psy12150 113 --IRDK-VKTFA-QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE 164 (456)
Q Consensus 113 --i~~~-l~~~~-~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~ 164 (456)
+++. -.+|. ....... ++..|-.|||+|.|....+.++.+.||.-
T Consensus 421 aVvkD~esgdf~iEAGALmL-------ADnGICCIDEFDKMd~~dqvAihEAMEQQ 469 (764)
T KOG0480|consen 421 AVVKDEESGDFTIEAGALML-------ADNGICCIDEFDKMDVKDQVAIHEAMEQQ 469 (764)
T ss_pred EEEecCCCCceeeecCcEEE-------ccCceEEechhcccChHhHHHHHHHHHhh
Confidence 0000 00000 0000001 34559999999999998899999999863
No 300
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.63 E-value=0.0006 Score=67.21 Aligned_cols=128 Identities=16% Similarity=0.221 Sum_probs=70.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc--CCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCC--CC-------CCCCCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF--GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN--QD-------GKPCPP 137 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~--~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~--~~-------~~~~~~ 137 (456)
+.|.||.|+||||+.-.+|..+. .+..+..++..|.-.....+.+ ..++........ .. -....+
T Consensus 206 i~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQL----k~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 206 IALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQL----KTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHH----HHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 99999999999999888887765 3444445555544432222222 222111000000 00 000135
Q ss_pred cEEEEEcCCCCccHH--HHHHHHHHHHhc-cCcceEEEEecCcccccccccCCce-----EEEecCCCHHH
Q psy12150 138 FKIVILDEADSMTHA--AQAALRRTMEKE-TKSTRFCLICNYVSCIIQPLTSRCS-----KFRFKPLAENT 200 (456)
Q Consensus 138 ~~iviIDE~d~l~~~--~~~~Ll~~le~~-~~~~~lIl~~~~~~kl~~~l~~r~~-----~i~f~~~~~~e 200 (456)
+++|+||-+.+-..+ ....|..++... +-.+.+++.++...+.++.+..++. -+-|.++++..
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKlDET~ 352 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKLDETT 352 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcceeEEEcccccC
Confidence 679999998765433 345566666543 4456677777765555555444433 45566666544
No 301
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.62 E-value=0.00092 Score=75.11 Aligned_cols=139 Identities=14% Similarity=0.188 Sum_probs=89.7
Q ss_pred HHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCC-----C
Q psy12150 55 SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF-----N 129 (456)
Q Consensus 55 ~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~-----~ 129 (456)
.++.+++.-++ ++++-|.||+|||+++.++|+..+. ..+.+|.++....- ++.+.....- .
T Consensus 1534 ~rVlRAmqv~k--pilLEGsPGVGKTSlItaLAr~tG~-----kliRINLSeQTdL~-------DLfGsd~Pve~~Gef~ 1599 (4600)
T COG5271 1534 RRVLRAMQVGK--PILLEGSPGVGKTSLITALARKTGK-----KLIRINLSEQTDLC-------DLFGSDLPVEEGGEFR 1599 (4600)
T ss_pred HHHHHHHhcCC--ceeecCCCCccHHHHHHHHHHHhcC-----ceEEeeccccchHH-------HHhCCCCCcccCceeE
Confidence 34555555443 4899999999999999999999765 45667776632221 1111100000 0
Q ss_pred CCCCC----CCCcEEEEEcCCCCccHHHHHHHHHHHHhcc--------------CcceEEEEecC-------cccccccc
Q psy12150 130 QDGKP----CPPFKIVILDEADSMTHAAQAALRRTMEKET--------------KSTRFCLICNY-------VSCIIQPL 184 (456)
Q Consensus 130 ~~~~~----~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~--------------~~~~lIl~~~~-------~~kl~~~l 184 (456)
....| ..+..-|++||+.-.+....+.|...++... ++. .||++.+ ++-+.+.+
T Consensus 1600 w~dapfL~amr~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~Hpnf-rVFAaqNPq~qggGRKgLPkSF 1678 (4600)
T COG5271 1600 WMDAPFLHAMRDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNF-RVFAAQNPQDQGGGRKGLPKSF 1678 (4600)
T ss_pred ecccHHHHHhhcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCe-eeeeecCchhcCCCcccCCHHH
Confidence 00000 0233489999998888888888887776421 223 3455533 35578899
Q ss_pred cCCceEEEecCCCHHHHHHHHHHH
Q psy12150 185 TSRCSKFRFKPLAENTMLTRLQYI 208 (456)
Q Consensus 185 ~~r~~~i~f~~~~~~el~~~l~~~ 208 (456)
..|+.++.+..++.+++..+....
T Consensus 1679 ~nRFsvV~~d~lt~dDi~~Ia~~~ 1702 (4600)
T COG5271 1679 LNRFSVVKMDGLTTDDITHIANKM 1702 (4600)
T ss_pred hhhhheEEecccccchHHHHHHhh
Confidence 999999999999999988776543
No 302
>KOG3347|consensus
Probab=97.61 E-value=7.7e-05 Score=62.67 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Q psy12150 66 LPHFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 66 ~~~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.|++|++|.||+||||++..++..+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 4679999999999999999999876
No 303
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.58 E-value=0.00022 Score=64.56 Aligned_cols=128 Identities=16% Similarity=0.227 Sum_probs=64.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhc---cCCCCCCCC-----------
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTA---SGFNQDGKP----------- 134 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~~----------- 134 (456)
++|.||+|+||||++-.++..+.....+..++..+.......+.+ +.++.... ........+
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL----~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQL----KTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHH----HHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHH----HHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 899999999999999999988765444334444443332222222 22221111 100000000
Q ss_pred -CCCcEEEEEcCCCCccHH--HHHHHHHHHHhc-cCcceEEEEecCccccccccc---CC--ceEEEecCCCHHH
Q psy12150 135 -CPPFKIVILDEADSMTHA--AQAALRRTMEKE-TKSTRFCLICNYVSCIIQPLT---SR--CSKFRFKPLAENT 200 (456)
Q Consensus 135 -~~~~~iviIDE~d~l~~~--~~~~Ll~~le~~-~~~~~lIl~~~~~~kl~~~l~---~r--~~~i~f~~~~~~e 200 (456)
..++.+|+||-+.....+ ..+.+.++++.. +..+.+|+.++........+. +. ...+-|.++++..
T Consensus 80 ~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~ 154 (196)
T PF00448_consen 80 RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETA 154 (196)
T ss_dssp HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSS
T ss_pred hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCC
Confidence 013569999999877543 345555555543 445667766654322221211 11 1245566776644
No 304
>PTZ00202 tuzin; Provisional
Probab=97.51 E-value=0.003 Score=63.08 Aligned_cols=52 Identities=25% Similarity=0.349 Sum_probs=43.4
Q ss_pred CCCCcccccccHHHHHHHHHHHhcCCC--Ce-EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 40 RPKTIDDVIEQQEVVSVLKKCLSGADL--PH-FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 40 ~P~~~~~ivg~~~~~~~l~~~l~~~~~--~~-~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.|....+++|++..+..|...+.+... +. .+|.|++|+|||++++.+...+.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 466778999999999999999975433 22 89999999999999999998753
No 305
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.49 E-value=0.017 Score=63.85 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=68.2
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHhcc-----CcceEEEEecCccccccccc--CCceEEEecCCCHHHHHHHHHHHHHH
Q psy12150 139 KIVILDEADSMTHAAQAALRRTMEKET-----KSTRFCLICNYVSCIIQPLT--SRCSKFRFKPLAENTMLTRLQYICEQ 211 (456)
Q Consensus 139 ~iviIDE~d~l~~~~~~~Ll~~le~~~-----~~~~lIl~~~~~~kl~~~l~--~r~~~i~f~~~~~~el~~~l~~~~~~ 211 (456)
-|+|+||++...+...+.|-..|.... .+.++++. +....+....+ .+...+.+.|++..+....+...+..
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h-~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~ 234 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLH-PLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGC 234 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCC-CccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCC
Confidence 389999999998888776666665543 11222111 11111111112 22458999999999999999988864
Q ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy12150 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244 (456)
Q Consensus 212 ~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~ 244 (456)
......+..+.+.+.+.|++==+...++.+..
T Consensus 235 -~~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 235 -TKLLPAPLLELIFEKTKGNPFFIEEFLKALYE 266 (849)
T ss_pred -cccccchHHHHHHHHhcCCCccHHHHHHHHHh
Confidence 34678888999999999976555555544433
No 306
>KOG0477|consensus
Probab=97.47 E-value=0.00056 Score=69.92 Aligned_cols=149 Identities=16% Similarity=0.251 Sum_probs=82.0
Q ss_pred cccccHHHHHHHHHHHhcCCC------------CeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChH-H
Q psy12150 46 DVIEQQEVVSVLKKCLSGADL------------PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQ-V 112 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~~~~~------------~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~-~ 112 (456)
.+.|+..++..+.-.+-+|.. -|+||.|.|||||+.+.+.+.+...... +..--++...+.. .
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV----~tTGqGASavGLTa~ 525 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAV----FTTGQGASAVGLTAY 525 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCccee----EeccCCccccceeEE
Confidence 467888888777777654431 1499999999999999999887532211 1111111100000 0
Q ss_pred HHHH--HHHH-HHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-------------CcceEEEEecC
Q psy12150 113 IRDK--VKTF-AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-------------KSTRFCLICNY 176 (456)
Q Consensus 113 i~~~--l~~~-~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-------------~~~~lIl~~~~ 176 (456)
++.. -+++ ..... ...+++.|.+|||+|.|.......+-+.||.-+ ..+.+|.++|+
T Consensus 526 v~KdPvtrEWTLEaGA-------LVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanP 598 (854)
T KOG0477|consen 526 VRKDPVTREWTLEAGA-------LVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANP 598 (854)
T ss_pred EeeCCccceeeeccCe-------EEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCC
Confidence 0000 0000 00000 011466799999999998766555555555422 33556777775
Q ss_pred ---cc----------cccccccCCceEEE-----ecCCCHHHHHHHH
Q psy12150 177 ---VS----------CIIQPLTSRCSKFR-----FKPLAENTMLTRL 205 (456)
Q Consensus 177 ---~~----------kl~~~l~~r~~~i~-----f~~~~~~el~~~l 205 (456)
+. ++..++.||+.++. +.|...+.+.+++
T Consensus 599 igGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fV 645 (854)
T KOG0477|consen 599 IGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFV 645 (854)
T ss_pred CCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHH
Confidence 22 46788999976332 3444445555544
No 307
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.46 E-value=0.0002 Score=71.04 Aligned_cols=114 Identities=18% Similarity=0.147 Sum_probs=63.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCc-cccceEEeeCCC------C-cChHHHHHHHHHHHHhhccCCCCCCCCCCCc
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASD------D-RGIQVIRDKVKTFAQQTASGFNQDGKPCPPF 138 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l~~~~-~~~~~~e~n~~~------~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 138 (456)
.+++|||++|+|||.++..+.+.+..+. .+..+.++=..- . ...+.+......+. .+.
T Consensus 63 ~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~--------------~~~ 128 (362)
T PF03969_consen 63 KGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA--------------KES 128 (362)
T ss_pred ceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH--------------hcC
Confidence 3499999999999999999999875421 111111110000 0 01111222222221 244
Q ss_pred EEEEEcCCCCccHHH---HHHHHHHHHhccCcceEEEEecCc-ccc-------------cccccCCceEEEecCC
Q psy12150 139 KIVILDEADSMTHAA---QAALRRTMEKETKSTRFCLICNYV-SCI-------------IQPLTSRCSKFRFKPL 196 (456)
Q Consensus 139 ~iviIDE~d~l~~~~---~~~Ll~~le~~~~~~~lIl~~~~~-~kl-------------~~~l~~r~~~i~f~~~ 196 (456)
++|++||++--.... ...|++.+- ...+++|.|+|.. ..+ +..|.++|.++++...
T Consensus 129 ~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~~ 201 (362)
T PF03969_consen 129 RLLCFDEFQVTDIADAMILKRLFEALF--KRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDGG 201 (362)
T ss_pred CEEEEeeeeccchhHHHHHHHHHHHHH--HCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecCC
Confidence 599999987543332 233444443 2457788888853 222 3456788888888665
No 308
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.46 E-value=0.00024 Score=70.65 Aligned_cols=92 Identities=20% Similarity=0.263 Sum_probs=51.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHh--cCCccccceEEeeCCCCcChHHHHHHHHHHH----------HhhccC--CCCCCCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL--FGDMYRERILELNASDDRGIQVIRDKVKTFA----------QQTASG--FNQDGKP 134 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l--~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~----------~~~~~~--~~~~~~~ 134 (456)
+++.|.||||||.++-.+++.+ ........++..|... ...++..+.... ....+. ......+
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l---~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPL---RNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKE 80 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchH---HHHHHHHHhhhcccchhhhhhhhhHHHHhhccccccc
Confidence 7999999999999999999998 3333333344444332 122222221111 000000 0001112
Q ss_pred CCCcEEEEEcCCCCccHH--------HHHHHHHHHHh
Q psy12150 135 CPPFKIVILDEADSMTHA--------AQAALRRTMEK 163 (456)
Q Consensus 135 ~~~~~iviIDE~d~l~~~--------~~~~Ll~~le~ 163 (456)
...+.+|||||++.|... ..+.|..++..
T Consensus 81 ~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 81 KNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred CCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 246789999999999872 23556666665
No 309
>KOG2228|consensus
Probab=97.45 E-value=0.0014 Score=62.55 Aligned_cols=164 Identities=15% Similarity=0.185 Sum_probs=83.8
Q ss_pred cccccHHHHHHHHHH----HhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHH
Q psy12150 46 DVIEQQEVVSVLKKC----LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFA 121 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~----l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~ 121 (456)
.+.|.......+.++ +..|....+++.||.|+|||.++.........-.-..-.+.+|+.-....-.+.+....+.
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~ 104 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLA 104 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHH
Confidence 356655444444444 4456665699999999999998876655411111112345566654332222333322222
Q ss_pred Hhhcc------CCCC-----------CCCCCCCcEEEEEcCCCCccHH-HHHHHHHHHHhc--cCcce-EEEEecCc---
Q psy12150 122 QQTAS------GFNQ-----------DGKPCPPFKIVILDEADSMTHA-AQAALRRTMEKE--TKSTR-FCLICNYV--- 177 (456)
Q Consensus 122 ~~~~~------~~~~-----------~~~~~~~~~iviIDE~d~l~~~-~~~~Ll~~le~~--~~~~~-lIl~~~~~--- 177 (456)
..... .+.. ++...+..-+.|+||+|.+.+. .|-.|.++++-. ...++ ++.++...
T Consensus 105 ~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~l 184 (408)
T KOG2228|consen 105 LELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDIL 184 (408)
T ss_pred HHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHH
Confidence 21110 0010 1122223335666789977654 444455555432 23333 33333322
Q ss_pred ccccccccCCce---EEEecCCCHHHHHHHHHHHH
Q psy12150 178 SCIIQPLTSRCS---KFRFKPLAENTMLTRLQYIC 209 (456)
Q Consensus 178 ~kl~~~l~~r~~---~i~f~~~~~~el~~~l~~~~ 209 (456)
..+-+.+++|+. ++-+++.+-++..++++..+
T Consensus 185 E~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 185 ELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 334567788876 33445556677777777665
No 310
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.45 E-value=0.00032 Score=64.41 Aligned_cols=20 Identities=55% Similarity=0.835 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACH 88 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~ 88 (456)
++|||+||+|||++++.+..
T Consensus 15 ~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 15 YLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred EEEECCCCCCHHHHHHhcCC
Confidence 99999999999999998864
No 311
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.00096 Score=65.98 Aligned_cols=139 Identities=17% Similarity=0.207 Sum_probs=67.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCC------------C
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP------------C 135 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~------------~ 135 (456)
.++|.||+|+||||++..++..+..... .+.-+++...+ ...+. .+..+.............+ .
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~~Gk--kVglI~aDt~R-iaAvE-QLk~yae~lgipv~v~~d~~~L~~aL~~lk~~ 318 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHGKKK--TVGFITTDHSR-IGTVQ-QLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 318 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCC--cEEEEecCCcc-hHHHH-HHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc
Confidence 3899999999999999999988764433 23333333222 11111 1111111100000000000 0
Q ss_pred CCcEEEEEcCCCCccH--HHHHHHHHHHHhccC-cceEEEEecCcc----cccccccCC-ceEEEecCCCHHHHHHHHHH
Q psy12150 136 PPFKIVILDEADSMTH--AAQAALRRTMEKETK-STRFCLICNYVS----CIIQPLTSR-CSKFRFKPLAENTMLTRLQY 207 (456)
Q Consensus 136 ~~~~iviIDE~d~l~~--~~~~~Ll~~le~~~~-~~~lIl~~~~~~----kl~~~l~~r-~~~i~f~~~~~~el~~~l~~ 207 (456)
.++.+||||-+..... .....+.+++....+ .+.+++.++... .+.+.+... ...+-|.++++..-.--+-.
T Consensus 319 ~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~TKLDET~k~G~iLn 398 (436)
T PRK11889 319 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLK 398 (436)
T ss_pred cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEEEcccCCCCccHHHH
Confidence 1356999999988753 345666666654333 344554433221 122222221 22566666666554333333
Q ss_pred HHH
Q psy12150 208 ICE 210 (456)
Q Consensus 208 ~~~ 210 (456)
++.
T Consensus 399 i~~ 401 (436)
T PRK11889 399 IPA 401 (436)
T ss_pred HHH
Confidence 333
No 312
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.40 E-value=0.0011 Score=57.61 Aligned_cols=24 Identities=29% Similarity=0.618 Sum_probs=21.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
++|+|+||+|||+++..++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999988753
No 313
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.40 E-value=0.002 Score=65.66 Aligned_cols=130 Identities=10% Similarity=0.142 Sum_probs=92.7
Q ss_pred HHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhh----hCChHHHHHHHHHHHHcCCCH
Q psy12150 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK----VDSFQVLEKYIEDLILEAYSA 395 (456)
Q Consensus 320 ~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~g~s~ 395 (456)
+++..+.+.+.||||+++++|..+.... +..|+.+.|.+++|+.....+..+++ .++..++...+..++..|...
T Consensus 203 eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~-~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~ 281 (484)
T PRK14956 203 EGLFWIAKKGDGSVRDMLSFMEQAIVFT-DSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDI 281 (484)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhC-CCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCH
Confidence 5678888999999999999997665432 23588888999999998777777664 345778888999999999999
Q ss_pred HHHHHHHHHHHhcC------------CCCCHHHH---------------HHHHHHH----HHH-HhhhhcCCChhHHHHH
Q psy12150 396 TQLFDQFHDIVMSA------------SSLSDKQK---------------ALILEKL----AEC-NARLQDGASEYIQILD 443 (456)
Q Consensus 396 ~di~~~l~~~~~~~------------~~~~~~~~---------------~~~~~~l----~~~-~~~l~~g~~~~~ql~~ 443 (456)
..++..|..++... -++|++.+ .+++..+ ..+ +.+++...+.++.+.-
T Consensus 282 ~~~~~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~r~~~E~ 361 (484)
T PRK14956 282 YKFLWDSIEFTHTLNLIRDSLADRESVNFPKEDLQKMKSDFENVDSSKLNFLSGKLFEIYEKIKTIRLRNSFEIKVFTEI 361 (484)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchhhccCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHH
Confidence 99988885443321 12343333 3333222 222 4567778888988887
Q ss_pred HHHHHHH
Q psy12150 444 LGSIVIK 450 (456)
Q Consensus 444 l~~~~~~ 450 (456)
.+..++.
T Consensus 362 ~~~~l~~ 368 (484)
T PRK14956 362 QIKKLVE 368 (484)
T ss_pred HHHHHhc
Confidence 7777764
No 314
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.39 E-value=0.0016 Score=57.83 Aligned_cols=44 Identities=27% Similarity=0.362 Sum_probs=35.6
Q ss_pred ccHHHHHHHHHHHhcC-CCCeEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 49 EQQEVVSVLKKCLSGA-DLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 49 g~~~~~~~l~~~l~~~-~~~~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.|.+++..+.+.+... ...+++|.+|+|+|||.++-.++..+..
T Consensus 7 ~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~ 51 (184)
T PF04851_consen 7 YQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR 51 (184)
T ss_dssp HHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc
Confidence 4677788888888876 5567999999999999999987776643
No 315
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=97.34 E-value=0.0032 Score=59.42 Aligned_cols=182 Identities=19% Similarity=0.190 Sum_probs=97.1
Q ss_pred CcccccccHHH---HHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHH
Q psy12150 43 TIDDVIEQQEV---VSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119 (456)
Q Consensus 43 ~~~~ivg~~~~---~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~ 119 (456)
...++++-... +..+..+-+.|. -..+||.+|.|||..++.+++.-. +...+.++.......+...+..
T Consensus 70 ~~~~~l~tkt~r~~~~~~~~A~k~g~--l~~vyg~~g~gKt~a~~~y~~s~p------~~~l~~~~p~~~a~~~i~~i~~ 141 (297)
T COG2842 70 LAPDFLETKTVRRIFFRTRPASKTGS--LVVVYGYAGLGKTQAAKNYAPSNP------NALLIEADPSYTALVLILIICA 141 (297)
T ss_pred ccccccccchhHhHhhhhhhhhhcCc--eEEEeccccchhHHHHHhhcccCc------cceeecCChhhHHHHHHHHHHH
Confidence 44456665543 333333334443 389999999999999999988631 2222222221111111111111
Q ss_pred HH------------HhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccCC
Q psy12150 120 FA------------QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSR 187 (456)
Q Consensus 120 ~~------------~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~r 187 (456)
.. ....... . ...++|++||+++|....++.|.+..++.. +-++++.+++ +.+-+++.
T Consensus 142 ~~~~~~~~~~~d~~~~~~~~l--~----~~~~~iivDEA~~L~~~ale~lr~i~d~~G--i~~vLvG~pr--L~~~l~~~ 211 (297)
T COG2842 142 AAFGATDGTINDLTERLMIRL--R----DTVRLIIVDEADRLPYRALEELRRIHDKTG--IGVVLVGMPR--LFKVLRRP 211 (297)
T ss_pred HHhcccchhHHHHHHHHHHHH--c----cCcceeeeehhhccChHHHHHHHHHHHhhC--ceEEEecChH--HHhccccc
Confidence 00 0000000 0 134599999999999999999988877654 3355555543 22222111
Q ss_pred c-------eEEEecCCC------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q psy12150 188 C-------SKFRFKPLA------ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246 (456)
Q Consensus 188 ~-------~~i~f~~~~------~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~ 246 (456)
. ..+.|.... .+++..+....+ ....++.+..+...++|++|.+-..+.-+...+
T Consensus 212 ~~~~~rl~srv~v~~~~~~~~~d~d~~~~~~~~~l----~~~~~~~v~~~~~~~~g~~~~L~~~l~~~~~~a 279 (297)
T COG2842 212 EDELSRLYSRVRVGKLLGEKFPDADELAEIAALVL----PTEDELVLMQVIKETEGNIRRLDKILAGAVGTA 279 (297)
T ss_pred hHHHHHHHHHhhhHhhhhhhhhhhHHHHHHHHhhC----ccchHHHHHHHHHhcchhHhHHHHHHhhhhhhh
Confidence 0 122222222 233333322222 125677777888888999998888886655544
No 316
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.33 E-value=0.00092 Score=59.51 Aligned_cols=30 Identities=30% Similarity=0.589 Sum_probs=26.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCccc
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMYR 96 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~ 96 (456)
+-++|+|+||+|||++++.+++.+....+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~ 31 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWR 31 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhh
Confidence 458999999999999999999999776554
No 317
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.29 E-value=0.00036 Score=71.92 Aligned_cols=50 Identities=16% Similarity=0.267 Sum_probs=41.0
Q ss_pred CCcccccccHHHHHHHHHHH----hcCCCC--eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 42 KTIDDVIEQQEVVSVLKKCL----SGADLP--HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 42 ~~~~~ivg~~~~~~~l~~~l----~~~~~~--~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.-|+++.|.+++++++..++ .+.... .++|.||||+|||++++.+++.+.
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 45899999999998888777 333222 399999999999999999999774
No 318
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.00093 Score=69.28 Aligned_cols=115 Identities=17% Similarity=0.208 Sum_probs=100.9
Q ss_pred HHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhh---hCChHHHHHHHHHHHHcCCCHH
Q psy12150 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDSFQVLEKYIEDLILEAYSAT 396 (456)
Q Consensus 320 ~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~s~~ 396 (456)
+++..+.+.++||||+++|.||.+... +..|+.++|++++|.+++..+-++++ .+++.++...+..|+..|++..
T Consensus 198 ~Al~~ia~~s~GdlR~aln~Lekl~~~--~~~It~~~V~~~l~~~~~~~if~Li~al~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 198 EALQLVARLADGAMRDAESLLERLLAL--GTPVTRKQVEEALGLPPQERLRGIAAALAQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHH
Confidence 467778899999999999999998653 33689999999999999888877775 5899999999999999999999
Q ss_pred HHHHHHHHHHh-------------cCCCCCHHHHHHHHHHHHHHHhhhhcCCCh
Q psy12150 397 QLFDQFHDIVM-------------SASSLSDKQKALILEKLAECNARLQDGASE 437 (456)
Q Consensus 397 di~~~l~~~~~-------------~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~ 437 (456)
+|+..|++.+. .. ++++..+..+++.|+++|+|+..|++-
T Consensus 276 ~Il~~L~~~~r~ll~~k~~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~ 328 (504)
T PRK14963 276 TLVEGLLEAFRAALYAELGLGGGPRL-EGAEPRLLAAMTALDEQMERFARRSDA 328 (504)
T ss_pred HHHHHHHHHHHHHHHHHhccCccccc-ccCcHHHHHHHHHHHHHHHHHHhccch
Confidence 99999988877 33 678999999999999999999999973
No 319
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.23 E-value=0.0017 Score=64.85 Aligned_cols=43 Identities=26% Similarity=0.384 Sum_probs=33.3
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
|..+.+.+.+.+......++++.|+.|||||++++++.+.+..
T Consensus 6 Q~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 6 QRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 4455666666666555556999999999999999999988754
No 320
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.0039 Score=64.15 Aligned_cols=119 Identities=15% Similarity=0.204 Sum_probs=90.9
Q ss_pred HHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhh---hCChHHHHHHHHHHHHcCCCHH
Q psy12150 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDSFQVLEKYIEDLILEAYSAT 396 (456)
Q Consensus 320 ~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~s~~ 396 (456)
+++..+.+.+.||+|+++|.|+.++... +..|+.+++.+.+|..+...+..+++ .++++++...+..|+..|.++.
T Consensus 199 eal~~Ia~~s~GdlR~aln~Le~l~~~~-~~~It~e~V~~~l~~~~~~~i~~li~si~~~d~~~Al~~l~~ll~~Gedp~ 277 (472)
T PRK14962 199 EALSFIAKRASGGLRDALTMLEQVWKFS-EGKITLETVHEALGLIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYE 277 (472)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHH
Confidence 4566777889999999999999876532 23588889999999998887777765 5899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHHHhhhhcCCChhH
Q psy12150 397 QLFDQFHDIVMSASSLSD-KQKALILEKLAECNARLQDGASEYI 439 (456)
Q Consensus 397 di~~~l~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~g~~~~~ 439 (456)
.++..|..++...-.+.+ .....++..+.++-.++.---...+
T Consensus 278 ~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e~~~~ 321 (472)
T PRK14962 278 VLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAEEKRL 321 (472)
T ss_pred HHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcchHHH
Confidence 999999888775423334 5556677777777666554433333
No 321
>PRK14974 cell division protein FtsY; Provisional
Probab=97.21 E-value=0.0041 Score=61.01 Aligned_cols=25 Identities=36% Similarity=0.487 Sum_probs=22.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
++|.|++|+||||++..++..+...
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999877543
No 322
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.19 E-value=0.01 Score=55.21 Aligned_cols=134 Identities=12% Similarity=0.111 Sum_probs=70.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCC---------------CcChHHHHHHHHHHHH---hhccCCC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD---------------DRGIQVIRDKVKTFAQ---QTASGFN 129 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~---------------~~~~~~i~~~l~~~~~---~~~~~~~ 129 (456)
.+++.|++|+|||+++..+...+..... .++-+.... ....+.+...+...-. ..... .
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~--~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k-~ 91 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFD--HIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK-S 91 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCC--EEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh-h
Confidence 3899999999999999999887654321 111111111 0011111111111111 11110 0
Q ss_pred CCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-CcceEEEEecCcccccccccCCceEEEecCCCHHHHHHHHH
Q psy12150 130 QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-KSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206 (456)
Q Consensus 130 ~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-~~~~lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~ 206 (456)
...+ ...+-+||+||+..- .-....+..++.... -++-+|+.+.....+.+.++.....+-+-..+..++..+++
T Consensus 92 ~~~k-~~~~~LiIlDD~~~~-~~k~~~l~~~~~~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~~s~~dl~~i~~ 167 (241)
T PF04665_consen 92 PQKK-NNPRFLIILDDLGDK-KLKSKILRQFFNNGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFNNSKRDLENIYR 167 (241)
T ss_pred cccC-CCCCeEEEEeCCCCc-hhhhHHHHHHHhcccccceEEEEEeeecccCCHHHhhcceEEEEecCcHHHHHHHHH
Confidence 0111 124559999998641 112334556655432 24567778888888888888777744433456666544333
No 323
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.18 E-value=0.011 Score=56.25 Aligned_cols=151 Identities=17% Similarity=0.262 Sum_probs=88.8
Q ss_pred ccccHHHHHHH---HHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHh
Q psy12150 47 VIEQQEVVSVL---KKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQ 123 (456)
Q Consensus 47 ivg~~~~~~~l---~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~ 123 (456)
++--+++++.+ .+.+...+ .|.++.|..|+||+++++..+--. ...++++......+..+.++.++.+...
T Consensus 10 lVlf~~ai~hi~ri~RvL~~~~-Gh~LLvG~~GsGr~sl~rLaa~i~-----~~~~~~i~~~~~y~~~~f~~dLk~~~~~ 83 (268)
T PF12780_consen 10 LVLFDEAIEHIARISRVLSQPR-GHALLVGVGGSGRQSLARLAAFIC-----GYEVFQIEITKGYSIKDFKEDLKKALQK 83 (268)
T ss_dssp ----HHHHHHHHHHHHHHCSTT-EEEEEECTTTSCHHHHHHHHHHHT-----TEEEE-TTTSTTTHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHHcCCC-CCeEEecCCCccHHHHHHHHHHHh-----ccceEEEEeeCCcCHHHHHHHHHHHHHH
Confidence 44445555444 44454322 469999999999999999766543 2366777766666777777777776655
Q ss_pred hccCCCCCCCCCCCcEEEEEcCCCCccHHHH---------------------HH--------------------HHH-HH
Q psy12150 124 TASGFNQDGKPCPPFKIVILDEADSMTHAAQ---------------------AA--------------------LRR-TM 161 (456)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~---------------------~~--------------------Ll~-~l 161 (456)
.... + ..-+++++|.+-...... +. +.+ ++
T Consensus 84 ag~~----~----~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~ 155 (268)
T PF12780_consen 84 AGIK----G----KPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFI 155 (268)
T ss_dssp HHCS---------S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHH
T ss_pred Hhcc----C----CCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHH
Confidence 4222 1 233777787655432111 11 111 12
Q ss_pred HhccCcceEEEEecCcc-------cccccccCCceEEEecCCCHHHHHHHHHHHHHH
Q psy12150 162 EKETKSTRFCLICNYVS-------CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211 (456)
Q Consensus 162 e~~~~~~~lIl~~~~~~-------kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~ 211 (456)
++...+.-+|++-++.. ...|+|.++|.+.-|.+.+.+.+...-...++.
T Consensus 156 ~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~ 212 (268)
T PF12780_consen 156 ERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLSD 212 (268)
T ss_dssp HHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCCH
T ss_pred HHHHhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHHh
Confidence 22334555666554422 246888999999999999999998887766654
No 324
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.18 E-value=0.0037 Score=66.05 Aligned_cols=37 Identities=22% Similarity=0.441 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecC
Q psy12150 137 PFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176 (456)
Q Consensus 137 ~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~ 176 (456)
+.++|||||+..+.......|++.+ +....+|++++.
T Consensus 259 ~~dvlIiDEaSMvd~~l~~~ll~al---~~~~rlIlvGD~ 295 (586)
T TIGR01447 259 PLDVLVVDEASMVDLPLMAKLLKAL---PPNTKLILLGDK 295 (586)
T ss_pred cccEEEEcccccCCHHHHHHHHHhc---CCCCEEEEECCh
Confidence 4579999999999887777776655 456778888864
No 325
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.18 E-value=0.002 Score=65.45 Aligned_cols=104 Identities=17% Similarity=0.211 Sum_probs=53.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc--CCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCC--CCCC-------CCCCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF--GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF--NQDG-------KPCPP 137 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~--~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~--~~~~-------~~~~~ 137 (456)
++|.||+|+||||++..++..+. .... .+.-++....+. .. .+.+..+........ .... ....+
T Consensus 224 i~~vGptGvGKTTt~~kLA~~~~~~~~g~--~V~li~~D~~r~-~a-~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~ 299 (424)
T PRK05703 224 VALVGPTGVGKTTTLAKLAARYALLYGKK--KVALITLDTYRI-GA-VEQLKTYAKIMGIPVEVVYDPKELAKALEQLRD 299 (424)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCC--eEEEEECCccHH-HH-HHHHHHHHHHhCCceEccCCHHhHHHHHHHhCC
Confidence 89999999999999999988764 2223 344444433221 11 122222211100000 0000 00125
Q ss_pred cEEEEEcCCCCccH--HHHHHHHHHHHh--ccCcceEEEEecC
Q psy12150 138 FKIVILDEADSMTH--AAQAALRRTMEK--ETKSTRFCLICNY 176 (456)
Q Consensus 138 ~~iviIDE~d~l~~--~~~~~Ll~~le~--~~~~~~lIl~~~~ 176 (456)
+++||||.+..... ...+.|..+++. .+..+.+|+.++.
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~ 342 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATT 342 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCC
Confidence 67999999877543 344556666662 2234455555543
No 326
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.17 E-value=0.002 Score=61.31 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=27.6
Q ss_pred HHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 59 KCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 59 ~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
...+.+...++++.||+|+||||+.+.++..+..
T Consensus 104 ~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 104 YLVRNNRVLNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred HHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 3334555668999999999999999999988754
No 327
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.17 E-value=0.0035 Score=57.38 Aligned_cols=53 Identities=19% Similarity=0.335 Sum_probs=35.1
Q ss_pred HHhcCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHH
Q psy12150 60 CLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD 115 (456)
Q Consensus 60 ~l~~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~ 115 (456)
.+.+|-++. ++++||||+|||+++..++....... ..+++++... .....+.+
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g--~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQG--KKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEECCC-CCHHHHHH
Confidence 344554444 99999999999999999887764332 2567777754 23333433
No 328
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.16 E-value=0.0027 Score=55.13 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=30.5
Q ss_pred CcEEEEEcCCCCccHH---HHHHHHHHHHhccCcceEEEEecCc
Q psy12150 137 PFKIVILDEADSMTHA---AQAALRRTMEKETKSTRFCLICNYV 177 (456)
Q Consensus 137 ~~~iviIDE~d~l~~~---~~~~Ll~~le~~~~~~~lIl~~~~~ 177 (456)
.+++||+||+-....- ..+.+++.+++.+..+-+|+++.+.
T Consensus 95 ~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 95 EYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred CCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 6679999998654221 2456788888888888888888764
No 329
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.15 E-value=0.0038 Score=67.85 Aligned_cols=120 Identities=18% Similarity=0.179 Sum_probs=64.5
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHH-------HHHHHH
Q psy12150 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK-------VKTFAQ 122 (456)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~-------l~~~~~ 122 (456)
.+.....+...... +..+++|+||||||++++++.+.+........+. +-+........+.+. +-.+..
T Consensus 325 ~~~Q~~Ai~~~~~~---~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~-l~ApTg~AA~~L~e~~g~~a~Tih~lL~ 400 (720)
T TIGR01448 325 SEEQKQALDTAIQH---KVVILTGGPGTGKTTITRAIIELAEELGGLLPVG-LAAPTGRAAKRLGEVTGLTASTIHRLLG 400 (720)
T ss_pred CHHHHHHHHHHHhC---CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEE-EEeCchHHHHHHHHhcCCccccHHHHhh
Confidence 34444455555432 2489999999999999999988765422001222 222221111222211 111111
Q ss_pred hhccCCCCC-CCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecC
Q psy12150 123 QTASGFNQD-GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176 (456)
Q Consensus 123 ~~~~~~~~~-~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~ 176 (456)
......... .....+..+|||||+..+.......|++.+ +....+|++++.
T Consensus 401 ~~~~~~~~~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~---~~~~rlilvGD~ 452 (720)
T TIGR01448 401 YGPDTFRHNHLEDPIDCDLLIVDESSMMDTWLALSLLAAL---PDHARLLLVGDT 452 (720)
T ss_pred ccCCccchhhhhccccCCEEEEeccccCCHHHHHHHHHhC---CCCCEEEEECcc
Confidence 111000000 000124569999999999888777777654 355778888763
No 330
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.15 E-value=0.0017 Score=54.26 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
+++++||+|+|||+.+..++..+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 4799999999999999888877653
No 331
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.10 E-value=0.0013 Score=64.39 Aligned_cols=115 Identities=25% Similarity=0.362 Sum_probs=67.6
Q ss_pred HHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEE-eeCCCCcChHHHHHHHHHHHHhhccCCCCC
Q psy12150 54 VSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILE-LNASDDRGIQVIRDKVKTFAQQTASGFNQD 131 (456)
Q Consensus 54 ~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e-~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 131 (456)
+..++.++++-...+ ++|||||.||||.++..+.+-+.+. ++. +|..+.-....+
T Consensus 249 l~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi~Fl~Gk-----ViSf~Ns~ShFWLqPL------------------ 305 (432)
T PF00519_consen 249 LIALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGK-----VISFVNSKSHFWLQPL------------------ 305 (432)
T ss_dssp HHHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHHHHHTSE-----EE-GGGTTSCGGGGGG------------------
T ss_pred HHHHHHHHhCCCcccEEEEECCCCCchhHHHHHHHHHhCCE-----EEEecCCCCcccccch------------------
Confidence 467788888655555 9999999999999999999988653 332 344332221111
Q ss_pred CCCCCCcEEEEEcCCCCccHHHHHH-HHHHHHhcc-------------CcceEEEEecCc---ccccccccCCceEEEec
Q psy12150 132 GKPCPPFKIVILDEADSMTHAAQAA-LRRTMEKET-------------KSTRFCLICNYV---SCIIQPLTSRCSKFRFK 194 (456)
Q Consensus 132 ~~~~~~~~iviIDE~d~l~~~~~~~-Ll~~le~~~-------------~~~~lIl~~~~~---~kl~~~l~~r~~~i~f~ 194 (456)
.+.|+.++||+-.-.-.-.+. |+..++..+ .-+.+++++|.. ..-.+-|.+|...++|+
T Consensus 306 ----~d~Ki~llDDAT~~cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhSRi~~f~F~ 381 (432)
T PF00519_consen 306 ----ADAKIALLDDATYPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHSRITCFEFP 381 (432)
T ss_dssp ----CT-SSEEEEEE-HHHHHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCTTEEEEE--
T ss_pred ----hcCcEEEEcCCcccHHHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhhheEEEEEcC
Confidence 255699999986543333333 445554321 113366677632 22345588999988885
Q ss_pred C
Q psy12150 195 P 195 (456)
Q Consensus 195 ~ 195 (456)
.
T Consensus 382 n 382 (432)
T PF00519_consen 382 N 382 (432)
T ss_dssp S
T ss_pred C
Confidence 4
No 332
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.09 E-value=0.0041 Score=61.98 Aligned_cols=49 Identities=24% Similarity=0.458 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCC
Q psy12150 55 SVLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (456)
Q Consensus 55 ~~l~~~l~~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~ 105 (456)
..|.+.+.+|-.+. ++|+|+||+|||+++..++..+.... ..+++++..
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g--~~VlYvs~E 119 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG--GKVLYVSGE 119 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEECC
Confidence 55666666665554 99999999999999999988764432 245666554
No 333
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.08 E-value=0.0096 Score=53.14 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+++.|+||+||||+++.+++.++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999863
No 334
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.08 E-value=0.0072 Score=53.38 Aligned_cols=54 Identities=11% Similarity=0.150 Sum_probs=33.9
Q ss_pred cEEEEEcCC-CCccHHHHHHHHHHHHhccCc-ceEEEEecCcccccccccCCceEEE
Q psy12150 138 FKIVILDEA-DSMTHAAQAALRRTMEKETKS-TRFCLICNYVSCIIQPLTSRCSKFR 192 (456)
Q Consensus 138 ~~iviIDE~-d~l~~~~~~~Ll~~le~~~~~-~~lIl~~~~~~kl~~~l~~r~~~i~ 192 (456)
..+++-||. ..+.++....+++.+++.+.. +.++++ +....++.....|+..++
T Consensus 156 P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~A-THd~~lv~~~~~rvl~l~ 211 (223)
T COG2884 156 PAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMA-THDLELVNRMRHRVLALE 211 (223)
T ss_pred CCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEE-eccHHHHHhccCcEEEEe
Confidence 349999996 467777777888888875533 223333 344455566666655443
No 335
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.07 E-value=0.0012 Score=59.78 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecC
Q psy12150 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176 (456)
Q Consensus 138 ~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~ 176 (456)
..+||+||++.+++.....+ +.+...++.+|++++.
T Consensus 120 ~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKMI---LTRIGEGSKIIITGDP 155 (205)
T ss_dssp SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEEEE--
T ss_pred ceEEEEecccCCCHHHHHHH---HcccCCCcEEEEecCc
Confidence 46999999999998766555 4555567788888763
No 336
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.05 E-value=0.0081 Score=54.43 Aligned_cols=99 Identities=19% Similarity=0.222 Sum_probs=61.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~ 148 (456)
++|.|+-|+|||++.+.|......+. ++ .....+ ....+... -+|.+||++.
T Consensus 55 lvl~G~QG~GKStf~~~L~~~~~~d~-------~~--~~~~kd-~~~~l~~~------------------~iveldEl~~ 106 (198)
T PF05272_consen 55 LVLVGKQGIGKSTFFRKLGPEYFSDS-------IN--DFDDKD-FLEQLQGK------------------WIVELDELDG 106 (198)
T ss_pred eeEecCCcccHHHHHHHHhHHhccCc-------cc--cCCCcH-HHHHHHHh------------------HheeHHHHhh
Confidence 89999999999999999966532211 11 111111 11222211 1899999999
Q ss_pred ccHHHHHHHHHHHHh---------------ccCcceEEEEecCccccc-ccccCCceEEEecC
Q psy12150 149 MTHAAQAALRRTMEK---------------ETKSTRFCLICNYVSCII-QPLTSRCSKFRFKP 195 (456)
Q Consensus 149 l~~~~~~~Ll~~le~---------------~~~~~~lIl~~~~~~kl~-~~l~~r~~~i~f~~ 195 (456)
+.+...+.|..++.. .+...+||.++|...-+. +.=-+|+..+++..
T Consensus 107 ~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 107 LSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred cchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEEEEcC
Confidence 998888888777743 234466777777654332 23346666777765
No 337
>PRK13695 putative NTPase; Provisional
Probab=97.04 E-value=0.0099 Score=52.72 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=41.8
Q ss_pred cEEEEEcCCCCc---cHHHHHHHHHHHHhccCcceEEEEecCc--ccccccccCC--ceEEEecCCCHHHHHHHHHHHH
Q psy12150 138 FKIVILDEADSM---THAAQAALRRTMEKETKSTRFCLICNYV--SCIIQPLTSR--CSKFRFKPLAENTMLTRLQYIC 209 (456)
Q Consensus 138 ~~iviIDE~d~l---~~~~~~~Ll~~le~~~~~~~lIl~~~~~--~kl~~~l~~r--~~~i~f~~~~~~el~~~l~~~~ 209 (456)
.+++++||+..+ .....+.+...++. . ..+|++++.. ....+.+..+ +..+++.+-+.+++...+..+.
T Consensus 97 ~~~lllDE~~~~e~~~~~~~~~l~~~~~~-~--~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 97 ADVIIIDEIGKMELKSPKFVKAVEEVLDS-E--KPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred CCEEEEECCCcchhhhHHHHHHHHHHHhC-C--CeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHHH
Confidence 459999997554 33345556666642 2 3455555542 2334445444 4588888888888877766544
No 338
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.004 Score=61.79 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
++|.||+|+||||++..++..+
T Consensus 140 i~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 140 FALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999875
No 339
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.02 E-value=0.0032 Score=66.71 Aligned_cols=105 Identities=17% Similarity=0.205 Sum_probs=58.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCc-cccceEEeeCCCCcChHHHHHHHHHHH-----------------Hh-h-ccCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFA-----------------QQ-T-ASGF 128 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~-~~~~~~e~n~~~~~~~~~i~~~l~~~~-----------------~~-~-~~~~ 128 (456)
.+|+|+|||||||++..+...+.... .....+.+-+........+.+.+.... .+ . ..+.
T Consensus 170 ~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlLg~ 249 (615)
T PRK10875 170 SVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLLGA 249 (615)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHhCc
Confidence 89999999999999999887763210 011123333333222222333222100 00 0 0011
Q ss_pred CCCC-------CCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecC
Q psy12150 129 NQDG-------KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176 (456)
Q Consensus 129 ~~~~-------~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~ 176 (456)
.+.. ...-+.++|||||+..+.-.....|++.+ ++.+.+|++++.
T Consensus 250 ~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al---~~~~rlIlvGD~ 301 (615)
T PRK10875 250 QPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDAL---PPHARVIFLGDR 301 (615)
T ss_pred CCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhc---ccCCEEEEecch
Confidence 1100 00113469999999998877777777665 456788888864
No 340
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.01 E-value=0.005 Score=55.05 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++++||||+|||+++..++....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~ 24 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL 24 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999998877653
No 341
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.01 E-value=0.0057 Score=53.79 Aligned_cols=41 Identities=10% Similarity=0.137 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCCccHH---HHHHHHHHHHhccCcceEEEEecCc
Q psy12150 137 PFKIVILDEADSMTHA---AQAALRRTMEKETKSTRFCLICNYV 177 (456)
Q Consensus 137 ~~~iviIDE~d~l~~~---~~~~Ll~~le~~~~~~~lIl~~~~~ 177 (456)
.+.+||+||+-....- ..+.+++.|++.++.+-+|++....
T Consensus 97 ~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 97 ELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred CCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 6679999998633211 1345778888888888899998754
No 342
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.99 E-value=0.0016 Score=70.89 Aligned_cols=114 Identities=15% Similarity=0.232 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHH-------HHHHHHHh
Q psy12150 51 QEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD-------KVKTFAQQ 123 (456)
Q Consensus 51 ~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~-------~l~~~~~~ 123 (456)
+.....+...+.+. ..++|.|+||||||++++++...+..... .+.-+-.+. .....+.+ .+..+...
T Consensus 355 ~~Q~~Av~~i~~s~--~~~il~G~aGTGKTtll~~i~~~~~~~g~--~V~~~ApTg-~Aa~~L~~~~g~~a~Ti~~~~~~ 429 (744)
T TIGR02768 355 EEQYEAVRHVTGSG--DIAVVVGRAGTGKSTMLKAAREAWEAAGY--RVIGAALSG-KAAEGLQAESGIESRTLASLEYA 429 (744)
T ss_pred HHHHHHHHHHhcCC--CEEEEEecCCCCHHHHHHHHHHHHHhCCC--eEEEEeCcH-HHHHHHHhccCCceeeHHHHHhh
Confidence 44455555555432 24899999999999999999877654322 233322211 11111111 01111100
Q ss_pred hccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEec
Q psy12150 124 TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175 (456)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~ 175 (456)
. ........+..+|||||+..+.......|++.... ....+|++++
T Consensus 430 ~----~~~~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~--~~~kliLVGD 475 (744)
T TIGR02768 430 W----ANGRDLLSDKDVLVIDEAGMVGSRQMARVLKEAEE--AGAKVVLVGD 475 (744)
T ss_pred h----ccCcccCCCCcEEEEECcccCCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 0 00011113567999999999998887777775543 3466777775
No 343
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.99 E-value=0.0066 Score=61.71 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCcc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMY 95 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~ 95 (456)
++|+|++|+||||++..++..+....+
T Consensus 98 I~lvG~~GsGKTTtaakLA~~L~~~g~ 124 (437)
T PRK00771 98 IMLVGLQGSGKTTTAAKLARYFKKKGL 124 (437)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCC
Confidence 999999999999999999988765444
No 344
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.97 E-value=0.0092 Score=55.67 Aligned_cols=35 Identities=26% Similarity=0.183 Sum_probs=26.8
Q ss_pred HHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHh
Q psy12150 56 VLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 56 ~l~~~l~~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.|-+.+.+|-++. ++++|+||+|||+++..++...
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 4555555665444 9999999999999999987653
No 345
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.96 E-value=0.0023 Score=71.07 Aligned_cols=115 Identities=15% Similarity=0.167 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHH-------HHHHHHHHh
Q psy12150 51 QEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIR-------DKVKTFAQQ 123 (456)
Q Consensus 51 ~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~-------~~l~~~~~~ 123 (456)
+.....+...+.+.. .++|.|.+||||||+++.+...+....+ .++-+-.+. .-...+. ..+..+...
T Consensus 349 ~eQr~Av~~il~s~~--v~vv~G~AGTGKTT~l~~~~~~~e~~G~--~V~~~ApTG-kAA~~L~e~tGi~a~TI~sll~~ 423 (988)
T PRK13889 349 GEQADALAHVTDGRD--LGVVVGYAGTGKSAMLGVAREAWEAAGY--EVRGAALSG-IAAENLEGGSGIASRTIASLEHG 423 (988)
T ss_pred HHHHHHHHHHhcCCC--eEEEEeCCCCCHHHHHHHHHHHHHHcCC--eEEEecCcH-HHHHHHhhccCcchhhHHHHHhh
Confidence 344455555554332 4789999999999999888776543222 233221111 1011111 112222111
Q ss_pred hccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecC
Q psy12150 124 TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176 (456)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~ 176 (456)
. ........+..+|||||+..+.......|++..... ...+|++++.
T Consensus 424 ~----~~~~~~l~~~~vlIVDEASMv~~~~m~~LL~~a~~~--garvVLVGD~ 470 (988)
T PRK13889 424 W----GQGRDLLTSRDVLVIDEAGMVGTRQLERVLSHAADA--GAKVVLVGDP 470 (988)
T ss_pred h----cccccccccCcEEEEECcccCCHHHHHHHHHhhhhC--CCEEEEECCH
Confidence 0 000011125569999999999988888887766543 4677777753
No 346
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.95 E-value=0.00067 Score=56.14 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=21.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++|.|+||+||||+++.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 68999999999999999999873
No 347
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.95 E-value=0.0069 Score=54.11 Aligned_cols=41 Identities=10% Similarity=0.151 Sum_probs=30.4
Q ss_pred CcEEEEEcCCCCccHH---HHHHHHHHHHhccCcceEEEEecCc
Q psy12150 137 PFKIVILDEADSMTHA---AQAALRRTMEKETKSTRFCLICNYV 177 (456)
Q Consensus 137 ~~~iviIDE~d~l~~~---~~~~Ll~~le~~~~~~~lIl~~~~~ 177 (456)
.+.+||+||+-....- ..+.+++.|++.++.+-+|++..+.
T Consensus 115 ~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 115 SYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred CCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 6779999998544321 2456788888888888899998754
No 348
>KOG0481|consensus
Probab=96.94 E-value=0.033 Score=56.17 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=58.2
Q ss_pred cccccHHHHHHHHHHHhcCC------------CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeC--CCCcChH
Q psy12150 46 DVIEQQEVVSVLKKCLSGAD------------LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA--SDDRGIQ 111 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~~~~------------~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~--~~~~~~~ 111 (456)
.+.|++++++.+.=.+-+|. --|+||-|.||+.|+.+.+-+-+.. ++. ++-++ +...+..
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs-----PIa-VYTSGKGSSAAGLT 405 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS-----PIA-VYTSGKGSSAAGLT 405 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC-----ceE-EEecCCCcccccce
Confidence 46788888777765553332 1149999999999999988766531 111 11111 1111100
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHh
Q psy12150 112 VIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEK 163 (456)
Q Consensus 112 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~ 163 (456)
...+++-. ...+......-..++..||+|||+|.|..+..-++.+.||.
T Consensus 406 --ASV~RD~~-tReFylEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQ 454 (729)
T KOG0481|consen 406 --ASVIRDPS-TREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQ 454 (729)
T ss_pred --eeEEecCC-cceEEEecceEEEecCCEEEeehhhccCchhhhHHHHHHHh
Confidence 00000000 00000000000014556999999999998887777777765
No 349
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.93 E-value=0.007 Score=62.01 Aligned_cols=51 Identities=24% Similarity=0.500 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCC
Q psy12150 54 VSVLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD 106 (456)
Q Consensus 54 ~~~l~~~l~~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~ 106 (456)
+..|.+.+.+|-++. ++|+|+||+|||+++..++...... ...+++++..+
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ee 118 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEE 118 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccc
Confidence 356666676665554 9999999999999999998876422 12556665543
No 350
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.90 E-value=0.0041 Score=59.05 Aligned_cols=42 Identities=14% Similarity=0.015 Sum_probs=27.8
Q ss_pred hcCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCC
Q psy12150 62 SGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (456)
Q Consensus 62 ~~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~ 105 (456)
.+|-++. ++++|+||+|||+++..++........ .+++++..
T Consensus 30 ~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge--~vlyis~E 73 (259)
T TIGR03878 30 LGGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGN--PVLFVTVE 73 (259)
T ss_pred CCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCC--cEEEEEec
Confidence 3444444 999999999999999988765433222 34444443
No 351
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.87 E-value=0.003 Score=67.31 Aligned_cols=131 Identities=18% Similarity=0.221 Sum_probs=94.4
Q ss_pred HHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhh---hCChHHHHHHHHHHHHcCCC--
Q psy12150 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDSFQVLEKYIEDLILEAYS-- 394 (456)
Q Consensus 320 ~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~s-- 394 (456)
+++..+.+.+.|+||+++++|.+.... .+..|+.+.|+.++|.+....+.++++ ++++.+....+.+|..+|++
T Consensus 201 eAL~lIA~~A~GsmRdALsLLdQAia~-~~~~It~~~V~~~LG~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 201 QALRLLARAAQGSMRDALSLTDQAIAY-SANEVTETAVSGMLGALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh-ccCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 456778899999999999997655432 233688888999999999998877775 58999999999999988887
Q ss_pred --HHHHHHHHHHHHhcC--------------------CCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHH
Q psy12150 395 --ATQLFDQFHDIVMSA--------------------SSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 395 --~~di~~~l~~~~~~~--------------------~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~ 451 (456)
..||+..||+.+... ..++.+.+..+++.+-.....|...-++++.+.-.+..+..+
T Consensus 280 ~~l~dLl~~l~~~~~~q~~~~~~~~~~~e~~~~~~~a~~~s~~~l~~~~qi~l~g~~el~~ap~~~~~~Em~llr~l~~ 358 (830)
T PRK07003 280 TALQDLASLLHRIAWAQFAPASVLDEWPEAADLRRFAELLSPEQVQLFYQIATVGRGELGLAPDEYAGFTMTLLRMLAF 358 (830)
T ss_pred HHHHHHHHHHHHHHHHHhCccccccccchHHHHHHHHHhCCHHHHHHHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhcC
Confidence 456666666544421 123444455566666666677777777777777766665543
No 352
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.86 E-value=0.00074 Score=61.11 Aligned_cols=56 Identities=13% Similarity=0.197 Sum_probs=32.2
Q ss_pred EEEEEcCCCCccHHHH------HHHHHHHHhcc-CcceEEEEecCcccccccccCCce-EEEec
Q psy12150 139 KIVILDEADSMTHAAQ------AALRRTMEKET-KSTRFCLICNYVSCIIQPLTSRCS-KFRFK 194 (456)
Q Consensus 139 ~iviIDE~d~l~~~~~------~~Ll~~le~~~-~~~~lIl~~~~~~kl~~~l~~r~~-~i~f~ 194 (456)
.++||||++...+... ....+++.... ...-+++++..+..+.+.++..+. .+++.
T Consensus 81 ~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 81 SLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp -EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEE
T ss_pred cEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEE
Confidence 4999999997644321 23335554433 345688888888888888776655 34443
No 353
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.84 E-value=0.0074 Score=56.91 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
++|.|.||+||||+++.+++.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999998754
No 354
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.83 E-value=0.006 Score=60.22 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
++|.||.|+||||++..++..+..
T Consensus 209 i~lvGptGvGKTTt~akLA~~l~~ 232 (407)
T PRK12726 209 ISLIGQTGVGKTTTLVKLGWQLLK 232 (407)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999987643
No 355
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.022 Score=51.84 Aligned_cols=37 Identities=30% Similarity=0.331 Sum_probs=28.7
Q ss_pred HHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 57 l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
+.+.+-+...-+.|+.||||+||||+.+-+++-+..+
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g 164 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDG 164 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhcc
Confidence 4455544445568999999999999999999987653
No 356
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=96.82 E-value=0.027 Score=56.60 Aligned_cols=90 Identities=18% Similarity=0.286 Sum_probs=57.3
Q ss_pred EEEEEcCCCCccH--------HHHHHHHHHHHhc----cCcceEEEEecC------cc--cccccccCC-----------
Q psy12150 139 KIVILDEADSMTH--------AAQAALRRTMEKE----TKSTRFCLICNY------VS--CIIQPLTSR----------- 187 (456)
Q Consensus 139 ~iviIDE~d~l~~--------~~~~~Ll~~le~~----~~~~~lIl~~~~------~~--kl~~~l~~r----------- 187 (456)
=+|++||+..+-. ...+.|++++++. .+.+.+++++++ +. .-+++|.+|
T Consensus 241 LlI~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~~~~~~ 320 (416)
T PF10923_consen 241 LLILLDELENLYKLRNDQAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFFADDGF 320 (416)
T ss_pred eEEEEechHHHHhcCChHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhccccccccc
Confidence 3899999987632 2456777777652 245667776652 11 113444433
Q ss_pred ----ceEEEecCCCHHHHHHHHHHHHHH------cCCCCCHHHHHHHHHHc
Q psy12150 188 ----CSKFRFKPLAENTMLTRLQYICEQ------ESVMCDFKALETLVETS 228 (456)
Q Consensus 188 ----~~~i~f~~~~~~el~~~l~~~~~~------~~~~i~~~~l~~L~~~s 228 (456)
..++.+.+++.+++...+.++..- ....++++.+..+++.+
T Consensus 321 ~n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~~~~~~v~d~~l~~~~~~~ 371 (416)
T PF10923_consen 321 DNLRAPVIRLQPLTPEELLELLEKLRDIYAEAYGYESRVDDEELKAFAQHV 371 (416)
T ss_pred cCccCceecCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Confidence 227899999999998877766442 23467888887777654
No 357
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.80 E-value=0.013 Score=57.07 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=26.1
Q ss_pred HHHHHHh-cCCCCe--EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 56 VLKKCLS-GADLPH--FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 56 ~l~~~l~-~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.|...+. +|-++. ++|+||||+|||+++..++....
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~ 80 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQ 80 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4455555 444443 99999999999999888776553
No 358
>PF13479 AAA_24: AAA domain
Probab=96.80 E-value=0.0013 Score=60.41 Aligned_cols=19 Identities=47% Similarity=0.968 Sum_probs=17.6
Q ss_pred eEEEECCCCCcHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAA 86 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l 86 (456)
.++|||+||+|||+++..+
T Consensus 5 ~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL 23 (213)
T ss_pred EEEEECCCCCCHHHHHHhC
Confidence 3999999999999999887
No 359
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.80 E-value=0.019 Score=52.90 Aligned_cols=49 Identities=29% Similarity=0.433 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCC
Q psy12150 56 VLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD 106 (456)
Q Consensus 56 ~l~~~l~~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~ 106 (456)
.|-..+.+|-++. ++++|+||+|||+++..++....... ..++.++...
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g--~~v~yi~~e~ 57 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQG--KKVAYIDTEG 57 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEECCC
Confidence 4555566555544 99999999999999999998764432 2566666543
No 360
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.78 E-value=0.0073 Score=60.54 Aligned_cols=22 Identities=32% Similarity=0.712 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
++|.||+|+||||++..++...
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999754
No 361
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.75 E-value=0.005 Score=53.05 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
++|+|+||+||||+++.+++.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 6899999999999999999985
No 362
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.74 E-value=0.012 Score=54.84 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+++.|++|+|||+++..++..+
T Consensus 27 ~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 27 ILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999986665554
No 363
>PRK08118 topology modulation protein; Reviewed
Probab=96.73 E-value=0.004 Score=54.88 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
.+++.||+|+||||+++.+++.++.+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~ 28 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIP 28 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 48999999999999999999997654
No 364
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.72 E-value=0.013 Score=60.41 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.|.||.|+||||++..++..+.
T Consensus 353 IaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 353 IALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999987653
No 365
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.71 E-value=0.018 Score=56.06 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=26.4
Q ss_pred HHHHHHh-cCCCCe--EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 56 VLKKCLS-GADLPH--FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 56 ~l~~~l~-~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.|-..+. +|-++. +.++||||+|||+++..++....
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~ 80 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQ 80 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4555555 444433 89999999999999998876543
No 366
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.70 E-value=0.075 Score=52.08 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=32.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~ 107 (456)
+-|.|+||+||||++..+...+....++..++.++.+..
T Consensus 59 igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~ 97 (332)
T PRK09435 59 IGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSST 97 (332)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCcc
Confidence 999999999999999999998876556666677766654
No 367
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.69 E-value=0.012 Score=55.83 Aligned_cols=26 Identities=35% Similarity=0.636 Sum_probs=22.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
..++|.|++|+|||+++..++..+..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~ 101 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHG 101 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 34999999999999999999887643
No 368
>KOG1051|consensus
Probab=96.67 E-value=0.02 Score=62.33 Aligned_cols=171 Identities=16% Similarity=0.151 Sum_probs=104.2
Q ss_pred ccccccc-HHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccc-----ceEEeeCC----CCcChHHH
Q psy12150 44 IDDVIEQ-QEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRE-----RILELNAS----DDRGIQVI 113 (456)
Q Consensus 44 ~~~ivg~-~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~-----~~~e~n~~----~~~~~~~i 113 (456)
++-++|+ ++.++++.+.+.+....|-+|.|+||+|||.++.-+++.+..+..+. .++.++.. .....+++
T Consensus 185 ldPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~ 264 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEF 264 (898)
T ss_pred CCCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHH
Confidence 5667887 77777777777665556689999999999999999999886543322 22233322 12334566
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHH-------HHHHHHHHHhccCcceEEEEecC--c---cccc
Q psy12150 114 RDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA-------QAALRRTMEKETKSTRFCLICNY--V---SCII 181 (456)
Q Consensus 114 ~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~-------~~~Ll~~le~~~~~~~lIl~~~~--~---~kl~ 181 (456)
.+.++......... .+.-|+++||++.+.... ...+++.+..... +.+|-+++. + -.-.
T Consensus 265 E~rlk~l~k~v~~~--------~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~-l~~IGatT~e~Y~k~iekd 335 (898)
T KOG1051|consen 265 EERLKELLKEVESG--------GGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGG-LWCIGATTLETYRKCIEKD 335 (898)
T ss_pred HHHHHHHHHHHhcC--------CCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcCC-eEEEecccHHHHHHHHhhC
Confidence 67776666543211 133499999999885421 1223333332222 555554431 2 2246
Q ss_pred ccccCCceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHH
Q psy12150 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQ----ESVMCDFKALET 223 (456)
Q Consensus 182 ~~l~~r~~~i~f~~~~~~el~~~l~~~~~~----~~~~i~~~~l~~ 223 (456)
|++.+|++.+..+-|+.++...++.....+ .|..++++++..
T Consensus 336 PalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~ 381 (898)
T KOG1051|consen 336 PALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFS 381 (898)
T ss_pred cchhhCcceeEeccCcccchhhhhhhhhhhhccccCCccccccccc
Confidence 889999998888888877766665554443 344454444433
No 369
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.67 E-value=0.016 Score=51.22 Aligned_cols=35 Identities=29% Similarity=0.312 Sum_probs=25.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~ 105 (456)
+++.|+||+|||+++..++..+..... .+..+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~--~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGK--KVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC--cEEEEEcC
Confidence 689999999999999999987754322 34444443
No 370
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.66 E-value=0.017 Score=50.12 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.+.|.|+.|+|||++++.++..+.
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 389999999999999999987653
No 371
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.66 E-value=0.039 Score=53.71 Aligned_cols=149 Identities=16% Similarity=0.191 Sum_probs=77.0
Q ss_pred CCCCCCCCCCCcchhccCCCCcccccc-cHHHHHHHHHHHh----c-CCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc
Q psy12150 23 STSGKTRNKPVPWVEKYRPKTIDDVIE-QQEVVSVLKKCLS----G-ADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY 95 (456)
Q Consensus 23 ~~~~~~~~~~~~w~eky~P~~~~~ivg-~~~~~~~l~~~l~----~-~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~ 95 (456)
....++....+.|. +| +.++.+ .+..+..+.+++. . ..... ++++|+.|+|||++++.+..-++....
T Consensus 31 ~~~y~p~a~~p~~~-~~----L~~~~~~d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~ 105 (304)
T TIGR01613 31 TTEYDPKADCPTWN-GF----LLETFGGDNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYAT 105 (304)
T ss_pred cCCCCCCCCCchHH-HH----HHHHhCCCHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHhChhhc
Confidence 33444444444443 33 455555 3445666666652 2 22223 999999999999999988765533211
Q ss_pred ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHh------------
Q psy12150 96 RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEK------------ 163 (456)
Q Consensus 96 ~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~------------ 163 (456)
....+. ......+ ..+.... ..+++++++||++.-.....+.|..+...
T Consensus 106 -----~~~~~~--~~~~~~~--~~f~~a~----------l~gk~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~ 166 (304)
T TIGR01613 106 -----TAVASL--KMNEFQE--HRFGLAR----------LEGKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDP 166 (304)
T ss_pred -----cCCcch--hhhhccC--CCchhhh----------hcCCEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCc
Confidence 000000 0000000 0000000 02567999999874221122233333211
Q ss_pred --ccCcceEEEEecCcccc---cccccCCceEEEecC
Q psy12150 164 --ETKSTRFCLICNYVSCI---IQPLTSRCSKFRFKP 195 (456)
Q Consensus 164 --~~~~~~lIl~~~~~~kl---~~~l~~r~~~i~f~~ 195 (456)
......+|+++|....+ ..++.+|..++.|..
T Consensus 167 ~~~~~~~~~i~~tN~~P~~~~~~~a~~RR~~vi~f~~ 203 (304)
T TIGR01613 167 FEFTPKFTLVQSTNHLPRIRGFDGGIKRRLRIIPFTK 203 (304)
T ss_pred EEEEEeeEEEEEcCCCCccCCCChhheeeEEEEeccC
Confidence 11245688888876554 457889998888853
No 372
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.63 E-value=0.019 Score=58.92 Aligned_cols=51 Identities=25% Similarity=0.490 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCC
Q psy12150 54 VSVLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD 106 (456)
Q Consensus 54 ~~~l~~~l~~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~ 106 (456)
+..|.+.+.+|-.+. ++++|+||+|||+++..++..+.... ..+++++..+
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EE 132 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEE 132 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcC
Confidence 456667776665555 99999999999999999987764432 2456665543
No 373
>KOG4658|consensus
Probab=96.63 E-value=0.022 Score=63.07 Aligned_cols=187 Identities=11% Similarity=0.028 Sum_probs=98.8
Q ss_pred cccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccce-EEeeCCCCcChHHHHHHHHHHHHhhcc
Q psy12150 48 IEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERI-LELNASDDRGIQVIRDKVKTFAQQTAS 126 (456)
Q Consensus 48 vg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~-~e~n~~~~~~~~~i~~~l~~~~~~~~~ 126 (456)
+|++..++.+.+.+-......+-+||..|+||||+++.+.+....-...++. +=+..+.......+...+..-......
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~ 240 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE 240 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc
Confidence 9999999999999987766669999999999999999999876411111111 111112112222222221110000000
Q ss_pred CCCCC---C-------CCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc----CcceEEEEecCcccccccccCCceEEE
Q psy12150 127 GFNQD---G-------KPCPPFKIVILDEADSMTHAAQAALRRTMEKET----KSTRFCLICNYVSCIIQPLTSRCSKFR 192 (456)
Q Consensus 127 ~~~~~---~-------~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~----~~~~lIl~~~~~~kl~~~l~~r~~~i~ 192 (456)
..... . .-...+-++++||+-. +.. .+.+.-+. ....+++|+.... +-.....+...++
T Consensus 241 ~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~--~~d----w~~I~~~~p~~~~g~KvvlTTRs~~-V~~~~m~~~~~~~ 313 (889)
T KOG4658|consen 241 EWEDKEEDELASKLLNLLEGKRFLLVLDDIWE--EVD----WDKIGVPFPSRENGSKVVLTTRSEE-VCGRAMGVDYPIE 313 (889)
T ss_pred ccchhhHHHHHHHHHHHhccCceEEEEecccc--ccc----HHhcCCCCCCccCCeEEEEEeccHh-hhhccccCCcccc
Confidence 00000 0 0001344899999843 222 22222211 2256777765432 1111122244567
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy12150 193 FKPLAENTMLTRLQYICEQESVMC---DFKALETLVETSGGDMRRAITCLQSC 242 (456)
Q Consensus 193 f~~~~~~el~~~l~~~~~~~~~~i---~~~~l~~L~~~s~gdlr~~~~~L~~~ 242 (456)
..-+++++.-..+++.+-.....- -++....+++.|+|-+ -|++.+-.+
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLP-LAl~viG~~ 365 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLP-LALNVLGGL 365 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChH-HHHHHHHHH
Confidence 777888888777777664332211 2566677888888755 455555443
No 374
>PRK14532 adenylate kinase; Provisional
Probab=96.63 E-value=0.036 Score=49.69 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++++.|+||+||||+++.+++.++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 479999999999999999999864
No 375
>PF13245 AAA_19: Part of AAA domain
Probab=96.60 E-value=0.0034 Score=47.44 Aligned_cols=22 Identities=55% Similarity=0.939 Sum_probs=16.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+++.||||+|||+++...+..+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6779999999996555554444
No 376
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.60 E-value=0.0062 Score=64.64 Aligned_cols=131 Identities=18% Similarity=0.229 Sum_probs=98.7
Q ss_pred HHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhh---hCChHHHHHHHHHHHHcCCCHH
Q psy12150 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDSFQVLEKYIEDLILEAYSAT 396 (456)
Q Consensus 320 ~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~s~~ 396 (456)
+++..+.+.+.|+||++++.|..+... +...|+.++|..++|......+-++++ ++++..+...+..|...|++..
T Consensus 201 eAL~~Ia~~A~GslRdAlnLLDqaia~-g~g~It~e~V~~lLG~~d~~~If~LldAL~~~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 201 PALQLLGRAAAGSMRDALSLLDQAIAL-GSGKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHh-cCCCcCHHHHHHHHcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 457778889999999999999665542 334688888999999998777777664 6899999999999999999999
Q ss_pred HHHHHHHHHHhcC------------------------CCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHH
Q psy12150 397 QLFDQFHDIVMSA------------------------SSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 397 di~~~l~~~~~~~------------------------~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~ 451 (456)
+++..|..++... ..++...+..++..+-.....|...-+.++-+.-.+..+..+
T Consensus 280 ~~l~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~q~~l~~~~~l~~a~~~~~~~Em~llrl~~~ 358 (709)
T PRK08691 280 NALGELAILLQQLALIQAVPSALAHDDPDSDILHRLAQTISGEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLAF 358 (709)
T ss_pred HHHHHHHHHHHHHHHhhcCchhccccchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhc
Confidence 9999985554432 134555556666666667777777777777777666665543
No 377
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.59 E-value=0.011 Score=55.50 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=23.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
.++|.||+|+|||++++.+++.+...
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccccc
Confidence 48999999999999999999987554
No 378
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.59 E-value=0.016 Score=54.31 Aligned_cols=48 Identities=21% Similarity=0.139 Sum_probs=31.7
Q ss_pred HHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCC
Q psy12150 56 VLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (456)
Q Consensus 56 ~l~~~l~~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~ 105 (456)
.|-+.+.+|-++. ++++||||+|||+++..++.+..... ...+++...
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~g--e~~lyvs~e 58 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMG--EPGIYVALE 58 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC--CcEEEEEee
Confidence 4555566665555 99999999999999988765532221 245555543
No 379
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.59 E-value=0.0054 Score=68.58 Aligned_cols=100 Identities=18% Similarity=0.267 Sum_probs=58.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHH-------HHHHHHHhhccCCCCCCCCCCCcEE
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD-------KVKTFAQQTASGFNQDGKPCPPFKI 140 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~-------~l~~~~~~~~~~~~~~~~~~~~~~i 140 (456)
..++.|++||||||+++.+...+....+ .++-+-.+. .-...+.+ .+..+... ......+.....+
T Consensus 399 ~~~v~G~AGTGKTt~l~~~~~~~e~~G~--~V~g~ApTg-kAA~~L~e~~Gi~a~TIas~ll~----~~~~~~~l~~~~v 471 (1102)
T PRK13826 399 IAAVVGRAGAGKTTMMKAAREAWEAAGY--RVVGGALAG-KAAEGLEKEAGIQSRTLSSWELR----WNQGRDQLDNKTV 471 (1102)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCC--eEEEEcCcH-HHHHHHHHhhCCCeeeHHHHHhh----hccCccCCCCCcE
Confidence 3899999999999999999887644322 333322211 11111111 11111100 0001112234569
Q ss_pred EEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecC
Q psy12150 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176 (456)
Q Consensus 141 viIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~ 176 (456)
|||||+..+.......|++..+.. ...+|++++.
T Consensus 472 lVIDEAsMv~~~~m~~Ll~~~~~~--garvVLVGD~ 505 (1102)
T PRK13826 472 FVLDEAGMVASRQMALFVEAVTRA--GAKLVLVGDP 505 (1102)
T ss_pred EEEECcccCCHHHHHHHHHHHHhc--CCEEEEECCH
Confidence 999999999998888888877643 3567777763
No 380
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.58 E-value=0.028 Score=48.15 Aligned_cols=92 Identities=13% Similarity=0.121 Sum_probs=51.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCC------CCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEE
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS------DDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~------~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ivi 142 (456)
+.|.||.|+||||+++.++.......- . +.++.. ..-+....+ ++.-..... .+.++++
T Consensus 29 ~~i~G~nGsGKStLl~~l~G~~~~~~G--~-i~~~~~~~i~~~~~lS~G~~~-rv~laral~-----------~~p~ill 93 (144)
T cd03221 29 IGLVGRNGAGKSTLLKLIAGELEPDEG--I-VTWGSTVKIGYFEQLSGGEKM-RLALAKLLL-----------ENPNLLL 93 (144)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCCce--E-EEECCeEEEEEEccCCHHHHH-HHHHHHHHh-----------cCCCEEE
Confidence 899999999999999999886432111 1 111110 001112222 111111111 1334999
Q ss_pred EcCCC-CccHHHHHHHHHHHHhccCcceEEEEecCc
Q psy12150 143 LDEAD-SMTHAAQAALRRTMEKETKSTRFCLICNYV 177 (456)
Q Consensus 143 IDE~d-~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~ 177 (456)
+||.. .+.......+.+++.+.. ..+++++++.
T Consensus 94 lDEP~~~LD~~~~~~l~~~l~~~~--~til~~th~~ 127 (144)
T cd03221 94 LDEPTNHLDLESIEALEEALKEYP--GTVILVSHDR 127 (144)
T ss_pred EeCCccCCCHHHHHHHHHHHHHcC--CEEEEEECCH
Confidence 99975 677777777877777653 3455565543
No 381
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.57 E-value=0.018 Score=53.71 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=37.9
Q ss_pred HHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCc----cccceEEeeCCCCcChHHHHHH
Q psy12150 57 LKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDM----YRERILELNASDDRGIQVIRDK 116 (456)
Q Consensus 57 l~~~l~~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~~~----~~~~~~e~n~~~~~~~~~i~~~ 116 (456)
|-+.+.+|-++. +.|+||||+|||+++..++.....+. ....+++++..+......+.+.
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~ 73 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQI 73 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHH
Confidence 444455554444 99999999999999999986532211 1246777777664344444443
No 382
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.54 E-value=0.022 Score=55.59 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
++|.||+|+||||++..++..+...
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhc
Confidence 8999999999999999999887543
No 383
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.53 E-value=0.0036 Score=58.24 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
++++|+||+|||++++.+.+.
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 479999999999999999987
No 384
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.52 E-value=0.017 Score=51.37 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=18.1
Q ss_pred CeEEEECCCCCcHHHHH-HHHHHHh
Q psy12150 67 PHFLFYGPPGTGKTSTM-IAACHQL 90 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a-~~l~~~l 90 (456)
.++++.|++|+|||+.+ ..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 46999999999999944 4444443
No 385
>PRK04328 hypothetical protein; Provisional
Probab=96.52 E-value=0.014 Score=54.97 Aligned_cols=48 Identities=19% Similarity=0.077 Sum_probs=31.0
Q ss_pred HHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCC
Q psy12150 56 VLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (456)
Q Consensus 56 ~l~~~l~~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~ 105 (456)
.|-+.+.+|-++. ++++|+||+|||+++..++........ ..++++..
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge--~~lyis~e 60 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE--PGVYVALE 60 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCC--cEEEEEee
Confidence 3445555655444 999999999999999887765322222 34555443
No 386
>PRK09354 recA recombinase A; Provisional
Probab=96.52 E-value=0.029 Score=55.16 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=25.9
Q ss_pred HHHHHHh-cCCCCe--EEEECCCCCcHHHHHHHHHHHh
Q psy12150 56 VLKKCLS-GADLPH--FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 56 ~l~~~l~-~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.|-..+. +|-+.. +.|+||+|+|||+++..++...
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~ 84 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEA 84 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4555565 444433 8999999999999998877654
No 387
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.50 E-value=0.032 Score=51.56 Aligned_cols=60 Identities=13% Similarity=0.136 Sum_probs=37.8
Q ss_pred HHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCc----cccceEEeeCCCCcChHHHHH
Q psy12150 56 VLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDM----YRERILELNASDDRGIQVIRD 115 (456)
Q Consensus 56 ~l~~~l~~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~~~----~~~~~~e~n~~~~~~~~~i~~ 115 (456)
.|.+.+.+|-++. +.|+|+||+|||+++..++....... ....+++++.........+.+
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~ 72 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQ 72 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHH
Confidence 3444555554444 99999999999999999887653221 113567777765433333333
No 388
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.50 E-value=0.015 Score=50.92 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.+.|.||.|+||||+.+.++...
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998764
No 389
>PRK05973 replicative DNA helicase; Provisional
Probab=96.49 E-value=0.018 Score=53.58 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++|.|+||+|||+++..++....
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a 89 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAM 89 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 99999999999999998877653
No 390
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.45 E-value=0.022 Score=50.33 Aligned_cols=24 Identities=21% Similarity=0.084 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.+++.|+||+|||+++..++..+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC
Confidence 379999999999999999998753
No 391
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.44 E-value=0.019 Score=54.67 Aligned_cols=73 Identities=22% Similarity=0.299 Sum_probs=38.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeC-------C---CCcChHHHHHHHHHHHHhhccCCCCCCCCCC
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA-------S---DDRGIQVIRDKVKTFAQQTASGFNQDGKPCP 136 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~-------~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 136 (456)
|-++|+|-||+|||++++.+.+.+....+ .+..++. . +......++..+.........
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~--~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls---------- 69 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGK--EVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALS---------- 69 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT----EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT----------
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCC--EEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhc----------
Confidence 45899999999999999999998765333 2222221 1 122233445555444443322
Q ss_pred CcEEEEEcCCCCccH
Q psy12150 137 PFKIVILDEADSMTH 151 (456)
Q Consensus 137 ~~~iviIDE~d~l~~ 151 (456)
...+||+|+...+.+
T Consensus 70 ~~~iVI~Dd~nYiKg 84 (270)
T PF08433_consen 70 KDTIVILDDNNYIKG 84 (270)
T ss_dssp T-SEEEE-S---SHH
T ss_pred cCeEEEEeCCchHHH
Confidence 224999999887754
No 392
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.43 E-value=0.0023 Score=54.50 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+++.|+||+||||+++.+++.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 68999999999999999998764
No 393
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.021 Score=56.30 Aligned_cols=50 Identities=24% Similarity=0.493 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCC
Q psy12150 54 VSVLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD 106 (456)
Q Consensus 54 ~~~l~~~l~~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~ 106 (456)
+.++.+.+-+|-.+. +|+-|.||.||||+.-.++..+.... .++++...+
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEE 130 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEE 130 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCc
Confidence 467777787777766 99999999999999999998886532 577776654
No 394
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.41 E-value=0.039 Score=51.10 Aligned_cols=48 Identities=23% Similarity=0.438 Sum_probs=34.0
Q ss_pred HHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCC
Q psy12150 56 VLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (456)
Q Consensus 56 ~l~~~l~~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~ 105 (456)
.|-+.+.+|-++. ++++|+||+|||+++..++....... ..++.++..
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~--~~v~yi~~e 60 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNG--KKVIYIDTE 60 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEECC
Confidence 3455555554444 89999999999999999987664332 356666665
No 395
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.41 E-value=0.0039 Score=57.60 Aligned_cols=38 Identities=37% Similarity=0.555 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy12150 51 QEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 51 ~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+...+.+..++.... -.++.||||||||+++..++..+
T Consensus 4 ~~Q~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 4 ESQREAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 344555666665432 28999999999999888888776
No 396
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.41 E-value=0.013 Score=55.75 Aligned_cols=51 Identities=25% Similarity=0.376 Sum_probs=37.9
Q ss_pred CCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 41 PKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 41 P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
+.+++++--.+...+.+++.+.... ..++|.|++|+||||+++++...+..
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~~~~-GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLEKPH-GIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhcCC-CEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 3456666556666777777775432 24999999999999999999888754
No 397
>PRK14527 adenylate kinase; Provisional
Probab=96.40 E-value=0.027 Score=50.74 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
-++++||||+||||+++.+++.++.
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3999999999999999999988754
No 398
>KOG3928|consensus
Probab=96.38 E-value=0.14 Score=50.59 Aligned_cols=98 Identities=9% Similarity=0.035 Sum_probs=60.8
Q ss_pred EEEEcCCCCccH--------------H---HHHHHHHHHHhccCcceEEEEecC--cc----c-----------cccc--
Q psy12150 140 IVILDEADSMTH--------------A---AQAALRRTMEKETKSTRFCLICNY--VS----C-----------IIQP-- 183 (456)
Q Consensus 140 iviIDE~d~l~~--------------~---~~~~Ll~~le~~~~~~~lIl~~~~--~~----k-----------l~~~-- 183 (456)
+|.||++..+.. . -...+++++.+.....++|++.+. .. . +.+.
T Consensus 318 LvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt~g~vi~a~s~~~~~~a~~h~gv~~y~pr~llg~egf 397 (461)
T KOG3928|consen 318 LVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWTFGSVIMAISGVTTPSAFGHLGVAPYVPRKLLGEEGF 397 (461)
T ss_pred EEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhcccccceEEEEecccccchhccccccccCCchHhcCccch
Confidence 788999987753 1 134566777665555455555541 10 0 1111
Q ss_pred -ccCCceEEEecCCCHHHHHHHHHHHHHHcC--CC-CCHHHHHHHHHHcCCCHHHHHH
Q psy12150 184 -LTSRCSKFRFKPLAENTMLTRLQYICEQES--VM-CDFKALETLVETSGGDMRRAIT 237 (456)
Q Consensus 184 -l~~r~~~i~f~~~~~~el~~~l~~~~~~~~--~~-i~~~~l~~L~~~s~gdlr~~~~ 237 (456)
.+..+..++..+++.+|..+++...+++.= .+ ..++..+.+.-.++||++....
T Consensus 398 e~lqpf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~ 455 (461)
T KOG3928|consen 398 EALQPFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMER 455 (461)
T ss_pred hhccCcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHH
Confidence 123345788999999999998887766421 12 3477788899999999954433
No 399
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.38 E-value=0.15 Score=50.08 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 55 SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 55 ~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.-|..+++.+ .++++.|++|+||||+++++...+..
T Consensus 151 ~~L~~~v~~~--~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 151 EFLEHAVISK--KNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred HHHHHHHHcC--CcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 3444445543 36999999999999999999987753
No 400
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.37 E-value=0.018 Score=55.85 Aligned_cols=49 Identities=27% Similarity=0.350 Sum_probs=36.1
Q ss_pred CCCcccccc----cHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 41 PKTIDDVIE----QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 41 P~~~~~ivg----~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.++++++. .+.....|..+++.+ .++++.|++|+||||+++++.+.+.
T Consensus 105 ~~tl~~l~~~g~~~~~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 105 VFTLDDYVEAGIMTAAQRDVLREAVLAR--KNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CCCHHHHHhcCCCCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 345666652 234556677777643 3699999999999999999998874
No 401
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.37 E-value=0.031 Score=57.40 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++|.||.|+||||++..++..+.
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHHH
Confidence 89999999999999999998763
No 402
>PRK07261 topology modulation protein; Provisional
Probab=96.36 E-value=0.011 Score=52.41 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=22.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
+++.|++|+||||+++.+++.++.+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~ 27 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCP 27 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 7899999999999999999886543
No 403
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.35 E-value=0.012 Score=61.35 Aligned_cols=87 Identities=21% Similarity=0.336 Sum_probs=69.5
Q ss_pred HHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhh---hCChHHHHHHHHHHHHcCCCHH
Q psy12150 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDSFQVLEKYIEDLILEAYSAT 396 (456)
Q Consensus 320 ~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~s~~ 396 (456)
+++..+.+.+.|+||++++.|+.++.. ++..|+.++|.+++|.+++..+-++++ .++.+.+...++.+...|.+..
T Consensus 201 ~al~~ia~~s~GslR~al~lLdq~ia~-~~~~It~~~V~~~lg~~~~~~i~~ll~al~~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 201 AALDLLARAANGSVRDALSLLDQSIAY-GNGKVLIADVKTMLGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhc-CCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHH
Confidence 356677788999999999999665432 344689999999999999998888775 5889999999999999999974
Q ss_pred ----HHHHHHHHHHh
Q psy12150 397 ----QLFDQFHDIVM 407 (456)
Q Consensus 397 ----di~~~l~~~~~ 407 (456)
|++..+|+.+.
T Consensus 280 ~il~~l~~~~~~~~~ 294 (509)
T PRK14958 280 NALADLLSLLHQIAI 294 (509)
T ss_pred HHHHHHHHHHHHHHH
Confidence 66666666544
No 404
>PRK14528 adenylate kinase; Provisional
Probab=96.34 E-value=0.047 Score=49.01 Aligned_cols=25 Identities=36% Similarity=0.802 Sum_probs=22.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
..+++.||||+||||+++.+++.++
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999998864
No 405
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.34 E-value=0.013 Score=58.44 Aligned_cols=86 Identities=15% Similarity=0.169 Sum_probs=71.7
Q ss_pred HHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhh---hCChHHHHHHHHHHHHcCCCHHH
Q psy12150 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDSFQVLEKYIEDLILEAYSATQ 397 (456)
Q Consensus 321 ~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~s~~d 397 (456)
++..+...+.||+|++++.|+..+.. +...|+.++|.+.+|.+++..+-++++ .+++..+...++.+...|++..+
T Consensus 202 al~~ia~~s~G~~R~al~~l~~~~~~-~~~~It~~~v~~~l~~~~~~~i~~l~~ai~~~~~~~~~~~~~~l~~~g~~~~~ 280 (363)
T PRK14961 202 ALKLIAYHAHGSMRDALNLLEHAINL-GKGNINIKNVTDMLGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWEN 280 (363)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHH
Confidence 45566778899999999999877654 344688888999999999888877775 57899999999999999999999
Q ss_pred HHHHHHHHHh
Q psy12150 398 LFDQFHDIVM 407 (456)
Q Consensus 398 i~~~l~~~~~ 407 (456)
++..|..++.
T Consensus 281 il~~l~~~~~ 290 (363)
T PRK14961 281 ILIEMLRFLH 290 (363)
T ss_pred HHHHHHHHHH
Confidence 9999976665
No 406
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.33 E-value=0.045 Score=59.36 Aligned_cols=128 Identities=14% Similarity=0.089 Sum_probs=96.0
Q ss_pred HHHHHHHhcchHHHHHHHHHHhhhhhhcCCC---C--cc----cc------cchhcccCCCchHHHHHhh---hCChHHH
Q psy12150 320 KALETLVETSGGDMRRAITCLQSCARLKGGE---G--IV----NE------DVLEVTGVIPNPWIEKLLK---VDSFQVL 381 (456)
Q Consensus 320 ~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~---~--~~----~~------~~~~~~g~~~~~~~~~~~~---~~~~~~~ 381 (456)
+++..+.+.+.||+|+++|.|+.+....... . |+ .+ .+|...|.+....|..+++ .++.+++
T Consensus 198 eaL~~La~~s~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daA 277 (725)
T PRK13341 198 EAEKHLVDVANGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAA 277 (725)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHH
Confidence 4567777888999999999999876432111 1 21 11 1355567766667777776 4889999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHH
Q psy12150 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSL--SDKQKALILEKLAECNARLQDGASEYIQILDLGSI 447 (456)
Q Consensus 382 ~~~~~~l~~~g~s~~di~~~l~~~~~~~~~~--~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~ 447 (456)
...+..|++.|+++..|+..|..++.+.-.+ |...........|.-...|-+|...-.|...++|.
T Consensus 278 l~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE~~~~laq~~~~la~ 345 (725)
T PRK13341 278 LYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYPLAQAALYLAT 345 (725)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHc
Confidence 9899999999999999999999988863245 55666677777788888899999998888877764
No 407
>PRK06547 hypothetical protein; Provisional
Probab=96.33 E-value=0.0083 Score=53.12 Aligned_cols=32 Identities=28% Similarity=0.269 Sum_probs=25.7
Q ss_pred HhcCCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 61 l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
+..++...+++.|++|+|||++++.+++.+..
T Consensus 10 ~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~ 41 (172)
T PRK06547 10 LCGGGMITVLIDGRSGSGKTTLAGALAARTGF 41 (172)
T ss_pred hhcCCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44444444999999999999999999998654
No 408
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.29 E-value=0.045 Score=48.30 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=28.2
Q ss_pred CcEEEEEcCCC-CccHHHHHHHHHHHHhccCcceEEEEecCcc
Q psy12150 137 PFKIVILDEAD-SMTHAAQAALRRTMEKETKSTRFCLICNYVS 178 (456)
Q Consensus 137 ~~~iviIDE~d-~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~ 178 (456)
+.+++++||.- .|.......+.+++.+......+++++++..
T Consensus 114 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~ 156 (171)
T cd03228 114 DPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLS 156 (171)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence 34599999975 6677777777777765444455666666554
No 409
>PRK06696 uridine kinase; Validated
Probab=96.27 E-value=0.014 Score=54.05 Aligned_cols=43 Identities=12% Similarity=0.136 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHHhc---CCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 50 QQEVVSVLKKCLSG---ADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 50 ~~~~~~~l~~~l~~---~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
+..++.+|.+.+.. +++.-+.+.|++|+||||+++.+++.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34566666666642 22223999999999999999999999854
No 410
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.26 E-value=0.021 Score=54.49 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=22.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCcc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMY 95 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~ 95 (456)
+.|.||+|+||||++..++..+.....
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~g~ 101 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQGK 101 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCC
Confidence 888899999999999999987754433
No 411
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.23 E-value=0.045 Score=50.26 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACH 88 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~ 88 (456)
.++|+||.|+|||++.+.++.
T Consensus 31 ~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 31 IMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 489999999999999999884
No 412
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.21 E-value=0.029 Score=56.67 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||+|+||||++..++..+
T Consensus 194 i~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 194 YALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998753
No 413
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.21 E-value=0.004 Score=51.74 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
++|.|++|+||||+++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999986
No 414
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.21 E-value=0.039 Score=51.04 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+-|.||+||||||+.+.++.-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8899999999999999998744
No 415
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.19 E-value=0.011 Score=59.90 Aligned_cols=55 Identities=24% Similarity=0.233 Sum_probs=44.7
Q ss_pred cCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc
Q psy12150 39 YRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY 95 (456)
Q Consensus 39 y~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~ 95 (456)
+...+++++...+.....+.+.++.. .. +|++||.|+||||+..++.+.++.+..
T Consensus 232 ~~~l~l~~Lg~~~~~~~~~~~~~~~p--~GliLvTGPTGSGKTTTLY~~L~~ln~~~~ 287 (500)
T COG2804 232 QVILDLEKLGMSPFQLARLLRLLNRP--QGLILVTGPTGSGKTTTLYAALSELNTPER 287 (500)
T ss_pred cccCCHHHhCCCHHHHHHHHHHHhCC--CeEEEEeCCCCCCHHHHHHHHHHHhcCCCc
Confidence 34567788877888888888888743 34 999999999999999999999987554
No 416
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.18 E-value=0.019 Score=58.08 Aligned_cols=25 Identities=28% Similarity=0.382 Sum_probs=22.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
++|.|++|+||||++..++..+...
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999877543
No 417
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.17 E-value=0.015 Score=57.65 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
..+|+||+|+|||++++.+++.+...
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 38999999999999999999987653
No 418
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=96.14 E-value=0.034 Score=48.37 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+++.|++|+|||+++..+...
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988764
No 419
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.13 E-value=0.027 Score=50.22 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++..+
T Consensus 28 ~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 28 VGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998764
No 420
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.12 E-value=0.047 Score=53.01 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.+++.||+|+|||+++..+++.+++
T Consensus 6 ~i~i~GptgsGKt~la~~la~~~~~ 30 (307)
T PRK00091 6 VIVIVGPTASGKTALAIELAKRLNG 30 (307)
T ss_pred EEEEECCCCcCHHHHHHHHHHhCCC
Confidence 3899999999999999999998754
No 421
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.12 E-value=0.042 Score=48.02 Aligned_cols=28 Identities=32% Similarity=0.492 Sum_probs=24.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCcc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGDMY 95 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~~~ 95 (456)
-+.|+|.+|+||||+|.++.+.|.....
T Consensus 25 viW~TGLSGsGKSTiA~ale~~L~~~G~ 52 (197)
T COG0529 25 VIWFTGLSGSGKSTIANALEEKLFAKGY 52 (197)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHHcCC
Confidence 3999999999999999999999876544
No 422
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.11 E-value=0.0065 Score=44.91 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.+.|++|+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999987
No 423
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.11 E-value=0.026 Score=48.74 Aligned_cols=20 Identities=30% Similarity=0.652 Sum_probs=18.8
Q ss_pred EECCCCCcHHHHHHHHHHHh
Q psy12150 71 FYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 71 l~G~~G~GKT~~a~~l~~~l 90 (456)
|.||||+||||.++.+++.+
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 57999999999999999986
No 424
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.11 E-value=0.0065 Score=53.55 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=22.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.++|+|+||+|||++++.+++.++.
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l~~ 30 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRLGY 30 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4999999999999999999999743
No 425
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.10 E-value=0.012 Score=49.47 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=22.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
++|.|+.|+|||++++.+++.+..
T Consensus 25 i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 25 VLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCC
Confidence 899999999999999999998753
No 426
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.08 E-value=0.012 Score=56.64 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++|.||+|+||||++..++..+.
T Consensus 197 i~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998764
No 427
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.07 E-value=0.042 Score=53.25 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+++.|+||+||||+++.+++.+
T Consensus 5 iil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 5 ILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEcCCCCCHHHHHHHHHHHC
Confidence 8899999999999999999986
No 428
>KOG1808|consensus
Probab=96.07 E-value=0.006 Score=70.61 Aligned_cols=149 Identities=17% Similarity=0.302 Sum_probs=92.0
Q ss_pred HHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCC
Q psy12150 53 VVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132 (456)
Q Consensus 53 ~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 132 (456)
....+..+...+++ +++|-||.|+|||+.+..++++.+. +++++|...... .++.+..+............
T Consensus 428 ~la~~~~a~~~~~~-pillqG~tssGKtsii~~la~~~g~-----~~vrinnhehtd---~qeyig~y~~~~~g~l~fre 498 (1856)
T KOG1808|consen 428 NLADLARAISSGKF-PILLQGPTSSGKTSIIKELARATGK-----NIVRINNHEHTD---LQEYIGTYVADDNGDLVFRE 498 (1856)
T ss_pred HHHHHHHHHhcCCC-CeEEecCcCcCchhHHHHHHHHhcc-----Cceehhccccch---HHHHHHhhhcCCCCCeeeeh
Confidence 34555666666665 4999999999999999999999865 445554443322 23333322211110000000
Q ss_pred CC----CCCcEEEEEcCCCCccHHHHHHHHHHHHhc-----cCcce--------EEEEecC-------cccccccccCCc
Q psy12150 133 KP----CPPFKIVILDEADSMTHAAQAALRRTMEKE-----TKSTR--------FCLICNY-------VSCIIQPLTSRC 188 (456)
Q Consensus 133 ~~----~~~~~iviIDE~d~l~~~~~~~Ll~~le~~-----~~~~~--------lIl~~~~-------~~kl~~~l~~r~ 188 (456)
.+ ..+...+|+||+.....+..++|.+.+++. +.+.. +++.+.. ++.+..++.+|+
T Consensus 499 g~LV~Alr~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~rf 578 (1856)
T KOG1808|consen 499 GVLVQALRNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRNRF 578 (1856)
T ss_pred hHHHHHHHhCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhcccccc
Confidence 00 012348999999999999999999998762 11111 1222222 133567788888
Q ss_pred eEEEecCCCHHHHHHHHHHHHH
Q psy12150 189 SKFRFKPLAENTMLTRLQYICE 210 (456)
Q Consensus 189 ~~i~f~~~~~~el~~~l~~~~~ 210 (456)
..++|....++++..++..++.
T Consensus 579 ~e~~f~~~~e~e~~~i~~~~~~ 600 (1856)
T KOG1808|consen 579 IELHFDDIGEEELEEILEHRCG 600 (1856)
T ss_pred hhhhhhhcCchhhhhhhccccc
Confidence 8999999999988887776653
No 429
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.07 E-value=0.025 Score=49.88 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+++.|++|+|||+++..++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~ 22 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE 22 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 589999999999999999876
No 430
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.03 E-value=0.035 Score=50.36 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
++|.||+|+||||++.+++..+..
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhh
Confidence 799999999999999999888753
No 431
>PRK13947 shikimate kinase; Provisional
Probab=96.03 E-value=0.0072 Score=53.31 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=23.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.++++.|+||+|||++++.+++.++.
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 36899999999999999999999854
No 432
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.02 E-value=0.16 Score=48.93 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=25.6
Q ss_pred HhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 61 LSGADLPH-FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 61 l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
+...+.|- +++.|++|+|||+++..+++.++.
T Consensus 86 i~~~~~p~iIlI~G~sgsGKStlA~~La~~l~~ 118 (301)
T PRK04220 86 IRKSKEPIIILIGGASGVGTSTIAFELASRLGI 118 (301)
T ss_pred HhcCCCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34434444 999999999999999999999843
No 433
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.02 E-value=0.056 Score=49.54 Aligned_cols=97 Identities=14% Similarity=0.196 Sum_probs=54.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccccc---------------eEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRER---------------ILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~---------------~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 133 (456)
++++|++|+|||+++.++.+.......... .+.+...|..+...++.....+...+
T Consensus 8 ivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~--------- 78 (219)
T COG1100 8 IVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGA--------- 78 (219)
T ss_pred EEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCC---------
Confidence 899999999999999999987655322111 11133335556666655544443332
Q ss_pred CCCCcEEEEEcCCC-CccHHHHHHHHHHHHhcc-CcceEEEEecCc
Q psy12150 134 PCPPFKIVILDEAD-SMTHAAQAALRRTMEKET-KSTRFCLICNYV 177 (456)
Q Consensus 134 ~~~~~~iviIDE~d-~l~~~~~~~Ll~~le~~~-~~~~lIl~~~~~ 177 (456)
..-+++.|... .-..+........+.... ....++++.|..
T Consensus 79 ---~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~ 121 (219)
T COG1100 79 ---NGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKI 121 (219)
T ss_pred ---CEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccc
Confidence 22266666655 223333344444443333 345666676643
No 434
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.01 E-value=0.094 Score=45.19 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+++.|+||+|||++++.++..+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999874
No 435
>PRK06762 hypothetical protein; Provisional
Probab=96.00 E-value=0.007 Score=53.13 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
++|+|+||+||||+++.+++.+
T Consensus 5 i~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 5 IIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999987
No 436
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.00 E-value=0.018 Score=57.35 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
++|.||+|+|||++++.+++.+...
T Consensus 171 ~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 171 GLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred EEEECCCCCChhHHHHHHHHhhccc
Confidence 8999999999999999999987544
No 437
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=95.99 E-value=0.046 Score=57.15 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=30.9
Q ss_pred EEEEEcCC-CCccHHHHHHHHHHHHhccCcceEEEEecCc
Q psy12150 139 KIVILDEA-DSMTHAAQAALRRTMEKETKSTRFCLICNYV 177 (456)
Q Consensus 139 ~iviIDE~-d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~ 177 (456)
+++|+||+ ..|.++....+.+.+.+.-+.+.+|.++..+
T Consensus 535 ~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~ 574 (604)
T COG4178 535 KWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRP 574 (604)
T ss_pred CEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccch
Confidence 49999998 4677788889999998866677787777643
No 438
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=95.97 E-value=0.031 Score=53.52 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
+++.||+|+|||+++..+++.++.
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~ 25 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNA 25 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCC
Confidence 689999999999999999998754
No 439
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=95.96 E-value=0.11 Score=45.31 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
.+++.|++|+|||+++.++...
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999998864
No 440
>PRK07667 uridine kinase; Provisional
Probab=95.95 E-value=0.015 Score=52.56 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=23.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCcc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMY 95 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~ 95 (456)
+.|.|++|+||||+++.+++.+.....
T Consensus 20 IgI~G~~gsGKStla~~L~~~l~~~~~ 46 (193)
T PRK07667 20 LGIDGLSRSGKTTFVANLKENMKQEGI 46 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 899999999999999999998865433
No 441
>PRK03839 putative kinase; Provisional
Probab=95.95 E-value=0.0066 Score=54.13 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=21.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++|.|+||+||||+++.+++.+.
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999974
No 442
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.94 E-value=0.026 Score=59.59 Aligned_cols=130 Identities=10% Similarity=0.118 Sum_probs=99.5
Q ss_pred HHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhh---hCChHHHHHHHHHHHHcCCCHHH
Q psy12150 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDSFQVLEKYIEDLILEAYSATQ 397 (456)
Q Consensus 321 ~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~s~~d 397 (456)
++..+.+.++||||+++|.|+.++...++..|+.+++..++|..+...+.++++ .++...+...+..+...|.+..+
T Consensus 201 al~~Ia~~s~GdlR~aln~Ldql~~~~~~~~It~~~v~~llg~~~~~~i~~lv~al~~~d~~~al~~l~~l~~~g~d~~~ 280 (584)
T PRK14952 201 VYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYQRALGLLGATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRR 280 (584)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHH
Confidence 455667889999999999999887544345688889999999988777777654 58899999999999999999988
Q ss_pred HHHHHHHHHhcC-----------------------------CCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHH
Q psy12150 398 LFDQFHDIVMSA-----------------------------SSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIV 448 (456)
Q Consensus 398 i~~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~ 448 (456)
++..|..++... ..++...+.+++..+-+....+....+..+-+.-++..+
T Consensus 281 ~l~~L~~~~RdLll~k~~~~~~~~~l~~~~~~~~~~l~~qa~~~s~~~L~~~i~~l~~~~~~~~~~~~~rl~LE~llikl 360 (584)
T PRK14952 281 FATDLLERFRDLIVLQAVPDAAARGVVDAPEDVLERMREQAARIGLATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARL 360 (584)
T ss_pred HHHHHHHHHHHHHHHhhcchhhhcccccCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHH
Confidence 887774332211 125566677778866666666777788888888888887
Q ss_pred HH
Q psy12150 449 IK 450 (456)
Q Consensus 449 ~~ 450 (456)
+.
T Consensus 361 ~~ 362 (584)
T PRK14952 361 LL 362 (584)
T ss_pred hc
Confidence 74
No 443
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.93 E-value=0.04 Score=48.93 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=26.2
Q ss_pred cEEEEEcCCC-CccHHHHHHHHHHHHhcc-CcceEEEEecCcc
Q psy12150 138 FKIVILDEAD-SMTHAAQAALRRTMEKET-KSTRFCLICNYVS 178 (456)
Q Consensus 138 ~~iviIDE~d-~l~~~~~~~Ll~~le~~~-~~~~lIl~~~~~~ 178 (456)
.+++++||.- .+.....+.+.+++.+.. ....+|+++.+..
T Consensus 108 p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~ 150 (176)
T cd03238 108 GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 5699999974 566666666766665532 2344556666543
No 444
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=95.93 E-value=0.13 Score=44.34 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+++.|++|+|||+++..+...
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999864
No 445
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.93 E-value=0.084 Score=46.91 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=28.7
Q ss_pred CcEEEEEcCCC-CccHHHHHHHHHHHHhccCcceEEEEecCccc
Q psy12150 137 PFKIVILDEAD-SMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179 (456)
Q Consensus 137 ~~~iviIDE~d-~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~k 179 (456)
+.+++++||.- .|.....+.+.+.+.+......+|+++++...
T Consensus 116 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 159 (178)
T cd03247 116 DAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTG 159 (178)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 44699999974 66777777777777654334556666665543
No 446
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.92 E-value=0.069 Score=47.50 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++..+
T Consensus 28 ~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 28 IGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEECCCCChHHHHHHHHHcCC
Confidence 8999999999999999998754
No 447
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=95.91 E-value=0.042 Score=48.06 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+++.|++|+|||+++..+...
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999865
No 448
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.91 E-value=0.15 Score=50.50 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.++|.||+|+||||+++++...+..
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCc
Confidence 4999999999999999999987753
No 449
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=95.91 E-value=0.067 Score=53.89 Aligned_cols=90 Identities=16% Similarity=0.212 Sum_probs=49.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d 147 (456)
|++=-||.|||||++-+.+-.. ..-+++...+. ...+-+. .....|.. ..+.+|++||+.
T Consensus 210 NliELgPrGTGKS~vy~eiSp~---------~~liSGG~~T~----A~LFyn~------~~~~~GlV-~~~D~VafDEv~ 269 (457)
T PF13337_consen 210 NLIELGPRGTGKSYVYKEISPY---------GILISGGQVTV----AKLFYNM------STGQIGLV-GRWDVVAFDEVA 269 (457)
T ss_pred ceEEEcCCCCCceeehhhcCcc---------cEEEECCCcch----HHheeec------cCCcceee-eeccEEEEEecc
Confidence 4888999999999985544331 12222222110 0100000 00011111 256699999999
Q ss_pred Ccc---HHHHHHHHHHHHhcc---------CcceEEEEecCc
Q psy12150 148 SMT---HAAQAALRRTMEKET---------KSTRFCLICNYV 177 (456)
Q Consensus 148 ~l~---~~~~~~Ll~~le~~~---------~~~~lIl~~~~~ 177 (456)
.+. ++....+..||+... ...-+|+++|-.
T Consensus 270 ~i~f~d~d~i~imK~YMesG~fsRG~~~i~a~as~vf~GNi~ 311 (457)
T PF13337_consen 270 GIKFKDKDEIQIMKDYMESGSFSRGKEEINADASMVFVGNIN 311 (457)
T ss_pred CcccCChHHHHHHHHHHhccceeecccccccceeEEEEcCcC
Confidence 886 445567777887542 234577777743
No 450
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.91 E-value=0.027 Score=58.41 Aligned_cols=132 Identities=13% Similarity=0.155 Sum_probs=99.2
Q ss_pred HHHHHHHhcchHHHHHHHHHHhhhhhhcC--CCCcccccchhcccCCCchHHHHHhh---hCChHHHHHHHHHHHHcCCC
Q psy12150 320 KALETLVETSGGDMRRAITCLQSCARLKG--GEGIVNEDVLEVTGVIPNPWIEKLLK---VDSFQVLEKYIEDLILEAYS 394 (456)
Q Consensus 320 ~~~~~~~~~~~gd~r~~~~~lq~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~s 394 (456)
+++..+.+.+.|+||++++.|+.++...+ +..|+.++|.+++|.++...+-++++ .++...+...+..|..+|.+
T Consensus 210 eAL~~Ia~~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai~~~d~~~Al~~l~~L~~~g~~ 289 (507)
T PRK06645 210 EALRIIAYKSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVN 289 (507)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 45666778899999999999988754332 23689999999999999988877775 58999999999999999999
Q ss_pred HHHHHHHHHHHHh---cC----------------------CCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHH
Q psy12150 395 ATQLFDQFHDIVM---SA----------------------SSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVI 449 (456)
Q Consensus 395 ~~di~~~l~~~~~---~~----------------------~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~ 449 (456)
...++..|...+. .. ..++......+++.+.+....++...+..+-+.-.+-.++
T Consensus 290 ~~~~l~~l~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~l~r~~ 369 (507)
T PRK06645 290 LEIFIESVSDFIAYLNKVKMLPNYSLPIYESFNDRTKSILDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIKSI 369 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 9988765522211 00 1244556677777888888888888888877776666655
Q ss_pred HH
Q psy12150 450 KA 451 (456)
Q Consensus 450 ~~ 451 (456)
.+
T Consensus 370 ~~ 371 (507)
T PRK06645 370 YS 371 (507)
T ss_pred Hh
Confidence 43
No 451
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.91 E-value=0.092 Score=46.42 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+.+.++..+
T Consensus 31 ~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 31 LAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 8999999999999999999864
No 452
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.90 E-value=0.011 Score=57.72 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=38.9
Q ss_pred cc-cccccHHHHHHHHHHHhc----CCCCe--EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 44 ID-DVIEQQEVVSVLKKCLSG----ADLPH--FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 44 ~~-~ivg~~~~~~~l~~~l~~----~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
|+ ++.|.++.+.++...++. ..... ++|.||+|+|||++++.+.+.+..
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~ 114 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE 114 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence 45 899999998887777642 22222 999999999999999999998744
No 453
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.90 E-value=0.028 Score=60.58 Aligned_cols=141 Identities=11% Similarity=0.109 Sum_probs=67.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCC---------CCCCcE
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK---------PCPPFK 139 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~---------~~~~~~ 139 (456)
+.|.||.|+||||++..++..+........+.-+.... ..... .+.+..+............. ...+++
T Consensus 188 i~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt-~RigA-~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDS-FRIGA-LEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred EEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcc-cchHH-HHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 89999999999999999997652111001222222221 11111 12222222211100000000 013567
Q ss_pred EEEEcCCCCccHH--HHHHHHHHHH-hccCcceEEEEecCcc----cccccccC----CceEEEecCCCHHHHHHHHHHH
Q psy12150 140 IVILDEADSMTHA--AQAALRRTME-KETKSTRFCLICNYVS----CIIQPLTS----RCSKFRFKPLAENTMLTRLQYI 208 (456)
Q Consensus 140 iviIDE~d~l~~~--~~~~Ll~~le-~~~~~~~lIl~~~~~~----kl~~~l~~----r~~~i~f~~~~~~el~~~l~~~ 208 (456)
+||||=+.....+ ..+.+..+.+ ..+..+++|+.++... .+.+.+.. ....+-|.++++..-.--+-.+
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i 345 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDT 345 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHH
Confidence 9999999877533 2233333232 2234455665554322 22233322 2345778888876644444444
Q ss_pred HHH
Q psy12150 209 CEQ 211 (456)
Q Consensus 209 ~~~ 211 (456)
+..
T Consensus 346 ~~~ 348 (767)
T PRK14723 346 VIR 348 (767)
T ss_pred HHH
Confidence 443
No 454
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.89 E-value=0.018 Score=54.68 Aligned_cols=43 Identities=28% Similarity=0.291 Sum_probs=29.7
Q ss_pred HHhcCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeC
Q psy12150 60 CLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (456)
Q Consensus 60 ~l~~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~ 104 (456)
.+.+|-+.. ++++|+||+|||+++..++........ +++.+..
T Consensus 15 ~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge--~vlyvs~ 59 (260)
T COG0467 15 ILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGE--PVLYVST 59 (260)
T ss_pred HhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCC--cEEEEEe
Confidence 333444433 999999999999999999887665544 3444433
No 455
>PRK10867 signal recognition particle protein; Provisional
Probab=95.89 E-value=0.052 Score=55.17 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=21.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
+++.|++|+||||++..++..+...
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh
Confidence 8999999999999999998876543
No 456
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.87 E-value=0.011 Score=56.51 Aligned_cols=52 Identities=23% Similarity=0.361 Sum_probs=37.3
Q ss_pred CCcccccccHHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 42 KTIDDVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 42 ~~~~~ivg~~~~~~~l~~~l~~~--~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
-+++++.-.......+.+++... .-.++++.|++|+||||++.++...+...
T Consensus 101 ~sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 101 FSLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp -CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred ccHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 36777766655555555555433 12359999999999999999999987654
No 457
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.86 E-value=0.027 Score=61.44 Aligned_cols=88 Identities=20% Similarity=0.307 Sum_probs=71.1
Q ss_pred HHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhh---hCChHHHHHHHHHHHHcCCCHH
Q psy12150 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDSFQVLEKYIEDLILEAYSAT 396 (456)
Q Consensus 320 ~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~s~~ 396 (456)
+++..+.+.+.|+||++++++..+.. .+...++-+.+.+++|.+....+..+++ .+++.++...+..++..|++..
T Consensus 201 eAL~lIA~~S~Gd~R~ALnLLdQala-~~~~~It~~~V~~llG~iD~~~V~~llksI~~~D~~aaL~~l~~Ll~~G~D~~ 279 (944)
T PRK14949 201 EALTLLAKAANGSMRDALSLTDQAIA-FGGGQVMLTQVQTMLGSIDEQHVIALLKALTDADIGVLMQTCAQVLAFGADAQ 279 (944)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH-hcCCcccHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHH
Confidence 45677888999999999999965553 2333577778999999998777777765 4789999989999999999999
Q ss_pred HHHHHHHHHHhc
Q psy12150 397 QLFDQFHDIVMS 408 (456)
Q Consensus 397 di~~~l~~~~~~ 408 (456)
+|+..|..+++.
T Consensus 280 ~ILr~Ll~~lRD 291 (944)
T PRK14949 280 EVLRSLLELLHQ 291 (944)
T ss_pred HHHHHHHHHHHH
Confidence 999999777664
No 458
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.85 E-value=0.086 Score=51.40 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++++.||+|+||||+++++...+.
T Consensus 146 ~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 146 NIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHccCC
Confidence 699999999999999999998763
No 459
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=95.81 E-value=0.1 Score=45.61 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=20.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
++++.|++|+|||++++++.+..
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 38999999999999999998654
No 460
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=95.80 E-value=0.026 Score=58.71 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
++++|+||+||||+++.++...
T Consensus 372 Vil~G~pGSGKST~A~~l~~~~ 393 (526)
T TIGR01663 372 VIAVGFPGAGKSHFCKKFFQPA 393 (526)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 9999999999999999999864
No 461
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.78 E-value=0.022 Score=56.24 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=24.9
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 64 ADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 64 ~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
|+-...+|+||+|+|||++++.+++.+..+
T Consensus 131 GkGQR~LIvG~pGtGKTTLl~~la~~i~~~ 160 (380)
T PRK12608 131 GKGQRGLIVAPPRAGKTVLLQQIAAAVAAN 160 (380)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 333458999999999999999999988654
No 462
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=95.78 E-value=0.05 Score=49.30 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
.+++.|++|+|||+++..+...
T Consensus 8 kivvvG~~~vGKTsli~~l~~~ 29 (199)
T cd04110 8 KLLIIGDSGVGKSSLLLRFADN 29 (199)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3999999999999999999764
No 463
>PRK13808 adenylate kinase; Provisional
Probab=95.76 E-value=0.12 Score=50.54 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.++|+||||+|||++++.|++.++
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~yg 25 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYG 25 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 379999999999999999999864
No 464
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.76 E-value=0.03 Score=45.80 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+++.|++|+|||++++.++..-.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 68999999999999999997643
No 465
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.76 E-value=0.077 Score=48.18 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
-++|.||.|+||||+++.++...
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 38999999999999999998543
No 466
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.74 E-value=0.032 Score=50.05 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=21.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.++|.||+|+|||++++.+.+..
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 39999999999999999998864
No 467
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=95.74 E-value=0.11 Score=45.36 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+++.|++|+|||++++.+...
T Consensus 4 v~~vG~~~vGKTsli~~~~~~ 24 (165)
T cd04140 4 VVVFGAGGVGKSSLVLRFVKG 24 (165)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998764
No 468
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.74 E-value=0.058 Score=62.66 Aligned_cols=123 Identities=17% Similarity=0.199 Sum_probs=66.4
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcC--CccccceEEeeCCCCcChHHHH------HHHHHHH
Q psy12150 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG--DMYRERILELNASDDRGIQVIR------DKVKTFA 121 (456)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~--~~~~~~~~e~n~~~~~~~~~i~------~~l~~~~ 121 (456)
.+.....+..++.... ..++|.|.+||||||+++.+...+.. +.....++-+-... .-...+. ..+..|.
T Consensus 837 t~~Qr~Av~~iLts~d-r~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTg-kAa~~L~e~Gi~A~TIasfL 914 (1623)
T PRK14712 837 TSGQRAATRMILETSD-RFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTH-RAVGEMRSAGVDAQTLASFL 914 (1623)
T ss_pred CHHHHHHHHHHHhCCC-ceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechH-HHHHHHHHhCchHhhHHHHh
Confidence 3455566666665432 24899999999999999888765421 00011232221111 1111111 1122222
Q ss_pred HhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecC
Q psy12150 122 QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176 (456)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~ 176 (456)
............+..+..+|||||+..+.......|++.++. ....+|++++.
T Consensus 915 ~~~~~~~~~~~~~~~~~~llIVDEASMV~~~~m~~ll~~~~~--~garvVLVGD~ 967 (1623)
T PRK14712 915 HDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAA--GGGRAVASGDT 967 (1623)
T ss_pred ccccchhhcccCCCCCCcEEEEEccccccHHHHHHHHHhhhh--CCCEEEEEcch
Confidence 111000000011112457999999999998888888888864 34677788764
No 469
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.72 E-value=0.06 Score=63.32 Aligned_cols=122 Identities=17% Similarity=0.209 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcC--CccccceEEeeCCCCcChHHHH------HHHHHHHH
Q psy12150 51 QEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG--DMYRERILELNASDDRGIQVIR------DKVKTFAQ 122 (456)
Q Consensus 51 ~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~--~~~~~~~~e~n~~~~~~~~~i~------~~l~~~~~ 122 (456)
+.....+..++.+.. ..++|.|.+||||||+++.+...+.. ......++-+-... .....+. ..+..+..
T Consensus 970 ~~Q~~Av~~il~s~d-r~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTg-rAAk~L~e~Gi~A~TI~s~L~ 1047 (1747)
T PRK13709 970 SGQRAATRMILESTD-RFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTH-RAVGEMRSAGVDAQTLASFLH 1047 (1747)
T ss_pred HHHHHHHHHHHhCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcH-HHHHHHHhcCcchhhHHHHhc
Confidence 445555666665432 24899999999999999998877531 11111233221111 1111111 11112211
Q ss_pred hhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecC
Q psy12150 123 QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176 (456)
Q Consensus 123 ~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~ 176 (456)
...........+.....+|||||+..+.......|++.+... ...+|++++.
T Consensus 1048 ~~~~~~~~~~~~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~~--garvVLVGD~ 1099 (1747)
T PRK13709 1048 DTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAG--GGRAVSSGDT 1099 (1747)
T ss_pred ccccccccccCCCCCCcEEEEEccccccHHHHHHHHHhhhcC--CCEEEEecch
Confidence 100000000111124569999999999988888888887643 4677788763
No 470
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.72 E-value=0.035 Score=58.92 Aligned_cols=130 Identities=15% Similarity=0.247 Sum_probs=94.1
Q ss_pred HHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhh---hCChHHHHHHHHHHHHcCCCHH
Q psy12150 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDSFQVLEKYIEDLILEAYSAT 396 (456)
Q Consensus 320 ~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~s~~ 396 (456)
+++..+.+.+.||||++++.|..+... +...|+.++|.+++|..+...+-++++ .++...+...++.|...|++..
T Consensus 206 ~AL~~La~~s~GslR~al~lLdq~ia~-~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 206 QALRLLARAARGSMRDALSLTDQAIAF-GSGQLQEAAVRQMLGSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh-cCCCcCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHH
Confidence 356677788999999999998544322 344688899999999998888777764 5899999999999999999999
Q ss_pred HHHHHHHHHHhcC-------------------------CCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHH
Q psy12150 397 QLFDQFHDIVMSA-------------------------SSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 450 (456)
Q Consensus 397 di~~~l~~~~~~~-------------------------~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~ 450 (456)
.++..|..++..+ ..++......++..+-.....+...-++++.+.-.+..+..
T Consensus 285 ~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~em~l~r~~~ 363 (618)
T PRK14951 285 STLEEMAAVLQRMAVLQAVPQAAAAATDPEAAEVARLAALMPADETQLLYSICLHGRAELGLAPDEYAALTMVLLRLLA 363 (618)
T ss_pred HHHHHHHHHHHHHHHHHhCcccccccChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhh
Confidence 9999885444321 11344445555666666666666667777766666655543
No 471
>PRK00625 shikimate kinase; Provisional
Probab=95.71 E-value=0.01 Score=52.52 Aligned_cols=25 Identities=32% Similarity=0.264 Sum_probs=22.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
+++|.|.||+||||+++.+++.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~ 26 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSL 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4799999999999999999998754
No 472
>COG1485 Predicted ATPase [General function prediction only]
Probab=95.71 E-value=0.015 Score=56.29 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=22.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
+++||+-|.|||.++..+...+-.
T Consensus 68 lYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 68 LYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred EEEECCCCccHHHHHHHHHhhCCc
Confidence 999999999999999999988744
No 473
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.71 E-value=0.075 Score=50.81 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 55 SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 55 ~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
...+..+......-+-|.|+||+||||+++.+.+.+..
T Consensus 93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 44556666555555999999999999999999998754
No 474
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.69 E-value=0.012 Score=52.67 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+-+++.|+||+||||+++.+++.++
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999998863
No 475
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.67 E-value=0.18 Score=44.14 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
..+++.|++|+|||++++.+...
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcC
Confidence 34999999999999999999875
No 476
>PLN02674 adenylate kinase
Probab=95.67 E-value=0.19 Score=47.02 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=22.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.++|.||||+||+|.++.+++.++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcC
Confidence 4499999999999999999999864
No 477
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.67 E-value=0.049 Score=53.15 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=41.0
Q ss_pred HHHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHhcCC----ccccceEEeeCCCCcChHHHHHHHH
Q psy12150 55 SVLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGD----MYRERILELNASDDRGIQVIRDKVK 118 (456)
Q Consensus 55 ~~l~~~l~~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~~----~~~~~~~e~n~~~~~~~~~i~~~l~ 118 (456)
..+...+.+|-+.. +.++||||+|||+++..++.....+ .....+++++.......+.+.+.+.
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~ 151 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAE 151 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHH
Confidence 34555565554444 8999999999999999988764321 1123678888776444554544443
No 478
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.66 E-value=0.11 Score=47.31 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACH 88 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~ 88 (456)
.++|+||.|+|||++.+.++.
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EEEEECCCCCccHHHHHHHHH
Confidence 389999999999999999984
No 479
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.66 E-value=0.07 Score=45.81 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+++.|++|+|||+++.++...
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999754
No 480
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.66 E-value=0.042 Score=59.32 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCC-CccHHHHHHHHHHHHhccCcceEEEEecCc
Q psy12150 136 PPFKIVILDEAD-SMTHAAQAALRRTMEKETKSTRFCLICNYV 177 (456)
Q Consensus 136 ~~~~iviIDE~d-~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~ 177 (456)
.+.+|+++||+- .|..+....+.+.|.+......+|+++.+.
T Consensus 626 ~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl 668 (709)
T COG2274 626 SKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRL 668 (709)
T ss_pred cCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 355699999985 556666666777776665444555566554
No 481
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=95.66 E-value=0.016 Score=56.29 Aligned_cols=120 Identities=21% Similarity=0.243 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCC
Q psy12150 51 QEVVSVLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF 128 (456)
Q Consensus 51 ~~~~~~l~~~l~~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~ 128 (456)
+..+-.+.+.+-.+.+.. ++|-||-.|||||+|.++.+-+++ ..+.+|+..++- .--.+.+.
T Consensus 138 ~~~i~~iL~~lv~N~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG-----~~LNvN~p~dkl--------~FELG~Ai--- 201 (417)
T PF06431_consen 138 DDVILEILKCLVENIPKKRYWLFKGPVNSGKTTLAAALLDLCGG-----KSLNVNCPPDKL--------NFELGCAI--- 201 (417)
T ss_dssp HHHHHHHHHHHHHTBTTB-EEEEE-STTSSHHHHHHHHHHHH-E-----EEE-TSS-TTTH--------HHHHCCCT---
T ss_pred HHHHHHHHHHHhcCCCcceeEEEecCcCCchHHHHHHHHHhcCC-----ceeecCCChhhc--------chhhheee---
Confidence 344444444444444433 999999999999999999998765 456677765321 11111111
Q ss_pred CCCCCCCCCcEEEEEcCCCCc-------cH----HHHHHHHHHHHhcc--------------CcceEEEEecCccccccc
Q psy12150 129 NQDGKPCPPFKIVILDEADSM-------TH----AAQAALRRTMEKET--------------KSTRFCLICNYVSCIIQP 183 (456)
Q Consensus 129 ~~~~~~~~~~~iviIDE~d~l-------~~----~~~~~Ll~~le~~~--------------~~~~lIl~~~~~~kl~~~ 183 (456)
+.=.|+++++-.- ++ ...+.|+.+|+..- -.+.-|+++|.+ .+...
T Consensus 202 --------DQfmVvFEDVKGq~~~~~~Lp~G~G~~NLDNLRD~LDG~V~VNLErKH~NK~sQiFPPgIvTmNeY-~iP~T 272 (417)
T PF06431_consen 202 --------DQFMVVFEDVKGQPSDNKDLPPGQGMNNLDNLRDYLDGAVKVNLERKHQNKRSQIFPPGIVTMNEY-KIPQT 272 (417)
T ss_dssp --------T-SEEEEEEE--SSTTTTT----SHHHHHHTTHHHHH-SS-EEEECSSSEEEEE----EEEEESS--B--HH
T ss_pred --------ceEEEEEEecCCCcCCCCCCCCCCCcccchhhhhhccCceeechhhhhcccccccCCCceEeeccc-cCCcc
Confidence 1116677765332 22 24677889987421 012245566543 56777
Q ss_pred ccCCce-EEEecC
Q psy12150 184 LTSRCS-KFRFKP 195 (456)
Q Consensus 184 l~~r~~-~i~f~~ 195 (456)
++-|+. .+.|.+
T Consensus 273 v~vRf~~~~~F~~ 285 (417)
T PF06431_consen 273 VKVRFCKVLDFRP 285 (417)
T ss_dssp HHTTEEEEEE---
T ss_pred eeeeeEeeEeccc
Confidence 888876 667744
No 482
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.66 E-value=0.06 Score=57.53 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||+|+||||+++.+....
T Consensus 379 vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 379 IALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 9999999999999999998865
No 483
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.65 E-value=0.038 Score=58.31 Aligned_cols=131 Identities=16% Similarity=0.213 Sum_probs=98.4
Q ss_pred HHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhh---hCChHHHHHHHHHHHHcCCCH-
Q psy12150 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDSFQVLEKYIEDLILEAYSA- 395 (456)
Q Consensus 320 ~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~s~- 395 (456)
+++..+.+.+.|+||++++++.+... .++..|+.+.|.+++|.+....+.++++ .+++......++.+...|++.
T Consensus 206 eAL~~IA~~A~Gs~RdALsLLdQaia-~~~~~It~~~V~~~LG~~d~~~i~~Ll~aL~~~d~~~~l~l~~~l~~~G~d~~ 284 (700)
T PRK12323 206 NALRLLAQAAQGSMRDALSLTDQAIA-YSAGNVSEEAVRGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLSFA 284 (700)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH-hccCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHH
Confidence 35667788999999999999865443 2334688888999999999888777764 588999999999999999995
Q ss_pred ---HHHHHHHHHHHhcC--------------------CCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHH
Q psy12150 396 ---TQLFDQFHDIVMSA--------------------SSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 396 ---~di~~~l~~~~~~~--------------------~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~ 451 (456)
.|++..+++....- ..++...+..++..+-+....|...-+.++.+.-.+..+..+
T Consensus 285 ~~L~dLl~~l~~l~l~q~~~~~~~~~~~~~~~~~~~a~~~s~~~l~~~~q~~~~~~~el~~a~~~~~~~Em~llrll~~ 363 (700)
T PRK12323 285 GALQDLASLLQKIALAQVVPAAVQDDWPEADDIRRLAGRFDAQEVQLFYQIANLGRSELALAPDEYAGFTMTLLRMLAF 363 (700)
T ss_pred HHHHHHHHHHHHHHHHhhCchhcccccchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhC
Confidence 55555555443321 114566677778888888888888888888888777776654
No 484
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=95.63 E-value=0.12 Score=47.65 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=34.0
Q ss_pred CcEEEEEcCC-CCccHHHHHHHHHHHHh---ccCcceEEEEecCcccccccccCC
Q psy12150 137 PFKIVILDEA-DSMTHAAQAALRRTMEK---ETKSTRFCLICNYVSCIIQPLTSR 187 (456)
Q Consensus 137 ~~~iviIDE~-d~l~~~~~~~Ll~~le~---~~~~~~lIl~~~~~~kl~~~l~~r 187 (456)
+..++|+||. +.|.....+.|++++++ .++.+-+++++.....+.+-+..+
T Consensus 189 ~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~ 243 (257)
T COG1119 189 DPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHR 243 (257)
T ss_pred CCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceE
Confidence 3459999995 56666666677777664 234566778888777766655443
No 485
>PRK14531 adenylate kinase; Provisional
Probab=95.62 E-value=0.011 Score=52.93 Aligned_cols=25 Identities=36% Similarity=0.647 Sum_probs=22.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.+++.|+||+||||+++.+++.++.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~ 28 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGL 28 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3899999999999999999998743
No 486
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.62 E-value=0.085 Score=63.44 Aligned_cols=120 Identities=18% Similarity=0.265 Sum_probs=67.8
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHH-------HHHH
Q psy12150 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVK-------TFAQ 122 (456)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~-------~~~~ 122 (456)
.+.....+...+.+.. .-.+|.|++|+|||++++.+.+.+..... .+.-+-.+. .....+.+... .+..
T Consensus 431 s~~Q~~Av~~il~s~~-~v~ii~G~aGTGKTt~l~~l~~~~~~~G~--~V~~lAPTg-rAA~~L~e~~g~~A~Ti~~~l~ 506 (1960)
T TIGR02760 431 SPSNKDAVSTLFTSTK-RFIIINGFGGTGSTEIAQLLLHLASEQGY--EIQIITAGS-LSAQELRQKIPRLASTFITWVK 506 (1960)
T ss_pred CHHHHHHHHHHHhCCC-CeEEEEECCCCCHHHHHHHHHHHHHhcCC--eEEEEeCCH-HHHHHHHHHhcchhhhHHHHHH
Confidence 4555666666666532 24899999999999999999987654333 333332221 12222222111 0000
Q ss_pred hhccC--------CCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEec
Q psy12150 123 QTASG--------FNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175 (456)
Q Consensus 123 ~~~~~--------~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~ 175 (456)
..... +.....|..+..+|||||+..+.......|++..... +..+|++++
T Consensus 507 ~l~~~~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~~~~~~~Ll~~a~~~--garvVlvGD 565 (1960)
T TIGR02760 507 NLFNDDQDHTVQGLLDKSSPFSNKDIFVVDEANKLSNNELLKLIDKAEQH--NSKLILLND 565 (1960)
T ss_pred hhcccccchhHHHhhcccCCCCCCCEEEEECCCCCCHHHHHHHHHHHhhc--CCEEEEEcC
Confidence 00000 0001122235679999999999988888888766543 355666665
No 487
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.60 E-value=0.011 Score=50.90 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
+-+.|+|||||||+++.+++.++-
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCC
Confidence 568999999999999999999854
No 488
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.60 E-value=0.14 Score=44.69 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
..+++||.|+|||++++++.-.+
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999976544
No 489
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.60 E-value=0.09 Score=48.82 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.|.||+||||||+.+.+-+-+.
T Consensus 30 ~vliGpSGsGKTTtLkMINrLie 52 (309)
T COG1125 30 LVLIGPSGSGKTTTLKMINRLIE 52 (309)
T ss_pred EEEECCCCCcHHHHHHHHhcccC
Confidence 79999999999999998877553
No 490
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.58 E-value=0.0094 Score=52.16 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+++.||+|+||||+++.+++.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 47899999999999999999873
No 491
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=95.58 E-value=0.088 Score=45.49 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+++.|++|+|||++++.+...-
T Consensus 3 v~v~G~~~~GKTtli~~l~~~~ 24 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGK 24 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998653
No 492
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.58 E-value=0.012 Score=50.66 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=21.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
++|+|++|+|||++++.+++.++.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~ 25 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGL 25 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999998743
No 493
>PRK13949 shikimate kinase; Provisional
Probab=95.57 E-value=0.015 Score=51.36 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=22.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
+++|.|+||+|||++++.+++.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~ 27 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGL 27 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 5899999999999999999998743
No 494
>KOG0989|consensus
Probab=95.56 E-value=0.015 Score=55.03 Aligned_cols=92 Identities=29% Similarity=0.368 Sum_probs=58.5
Q ss_pred HHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCccccc-chhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHH
Q psy12150 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQL 398 (456)
Q Consensus 320 ~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di 398 (456)
++++.+...|+||||++++.||++++ .+..|++.- +-++.|..|...+.++ ++. ..--+..++
T Consensus 211 ~al~~I~~~S~GdLR~Ait~Lqsls~--~gk~It~~~~~e~~~GvVp~~~l~~l------------le~--a~S~d~~~~ 274 (346)
T KOG0989|consen 211 DALKLIAKISDGDLRRAITTLQSLSL--LGKRITTSLVNEELAGVVPDEKLLDL------------LEL--ALSADTPNT 274 (346)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhhc--cCcccchHHHHHHHhccCCHHHHHHH------------HHH--HHccChHHH
Confidence 67888999999999999999999998 466788555 4455668777666552 221 111233455
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhh
Q psy12150 399 FDQFHDIVMSASSLSDKQKALILEKLAECNARLQ 432 (456)
Q Consensus 399 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 432 (456)
+.-...++.. .++. ..++..|+++=....
T Consensus 275 v~~~Rei~~s--g~~~---~~lmsQLa~vi~~~~ 303 (346)
T KOG0989|consen 275 VKRVREIMRS--GYSP---LQLMSQLAEVIMDII 303 (346)
T ss_pred HHHHHHHHHh--ccCH---HHHHHHHHHHHHhcc
Confidence 5555555543 4555 445555555544444
No 495
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.56 E-value=0.034 Score=51.66 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 52 EVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 52 ~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
.+++.+..+......+. +.|.||+|+||||+++.++..+...
T Consensus 18 ~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 18 PLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 34455556655433333 9999999999999999999987543
No 496
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=95.55 E-value=0.12 Score=47.77 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+++.|.+|+|||+++..+...
T Consensus 16 i~vvG~~gvGKTsli~~~~~~ 36 (219)
T PLN03071 16 LVIVGDGGTGKTTFVKRHLTG 36 (219)
T ss_pred EEEECcCCCCHHHHHHHHhhC
Confidence 999999999999999987654
No 497
>KOG0922|consensus
Probab=95.55 E-value=0.12 Score=53.84 Aligned_cols=35 Identities=11% Similarity=0.229 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHH
Q psy12150 53 VVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 53 ~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
..++|...+++.. -+++.|+.||||||-+=.+..+
T Consensus 55 ~r~~il~~ve~nq--vlIviGeTGsGKSTQipQyL~e 89 (674)
T KOG0922|consen 55 YRDQILYAVEDNQ--VLIVIGETGSGKSTQIPQYLAE 89 (674)
T ss_pred HHHHHHHHHHHCC--EEEEEcCCCCCccccHhHHHHh
Confidence 3466667776543 4899999999999966544433
No 498
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.54 E-value=0.59 Score=42.23 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+.+++.|++|+|||++++.+...
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 45999999999999999998875
No 499
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.53 E-value=0.015 Score=51.65 Aligned_cols=25 Identities=24% Similarity=0.221 Sum_probs=22.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.+++.|+||+||||+++.+++.+..
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCC
Confidence 3899999999999999999998643
No 500
>PRK14530 adenylate kinase; Provisional
Probab=95.53 E-value=0.013 Score=53.95 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.++|.|+||+||||+++.+++.++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~ 29 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGV 29 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999998743
Done!