Query psy12150
Match_columns 456
No_of_seqs 337 out of 3083
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 20:01:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sxj_C Activator 1 40 kDa subu 100.0 8.1E-41 2.8E-45 329.7 35.6 316 32-453 12-332 (340)
2 1sxj_D Activator 1 41 kDa subu 100.0 2E-39 6.9E-44 321.0 29.7 327 26-450 18-352 (353)
3 1iqp_A RFCS; clamp loader, ext 100.0 2.6E-38 8.7E-43 309.5 31.2 317 29-453 9-326 (327)
4 2chq_A Replication factor C sm 100.0 2.1E-38 7.3E-43 309.0 30.2 313 31-451 3-316 (319)
5 1sxj_E Activator 1 40 kDa subu 100.0 2.7E-38 9.3E-43 313.2 27.2 323 33-452 2-353 (354)
6 1sxj_B Activator 1 37 kDa subu 100.0 6.9E-37 2.4E-41 298.8 33.5 317 31-455 7-323 (323)
7 3u61_B DNA polymerase accessor 100.0 2.9E-37 9.8E-42 302.3 28.8 299 28-451 9-320 (324)
8 1jr3_A DNA polymerase III subu 100.0 1.5E-34 5.1E-39 288.2 34.1 330 32-451 3-359 (373)
9 2gno_A DNA polymerase III, gam 100.0 4.9E-33 1.7E-37 268.5 19.4 281 49-452 1-298 (305)
10 1jr3_D DNA polymerase III, del 100.0 6.7E-32 2.3E-36 266.3 16.8 308 56-450 8-333 (343)
11 3pvs_A Replication-associated 100.0 1.1E-29 3.8E-34 257.5 29.2 256 33-305 14-299 (447)
12 2chg_A Replication factor C sm 100.0 2.7E-28 9.4E-33 224.1 25.2 223 31-262 3-225 (226)
13 1a5t_A Delta prime, HOLB; zinc 100.0 2.1E-28 7.3E-33 240.1 21.8 289 48-451 5-322 (334)
14 1njg_A DNA polymerase III subu 99.9 3E-26 1E-30 213.2 22.9 221 31-261 9-249 (250)
15 1sxj_A Activator 1 95 kDa subu 99.9 2.7E-25 9.2E-30 230.4 19.9 240 26-274 20-288 (516)
16 3pfi_A Holliday junction ATP-d 99.9 1.8E-23 6.2E-28 205.4 21.3 212 29-260 13-251 (338)
17 3uk6_A RUVB-like 2; hexameric 99.9 2.4E-22 8.4E-27 199.6 24.2 225 30-262 28-329 (368)
18 1hqc_A RUVB; extended AAA-ATPa 99.9 6.7E-22 2.3E-26 192.9 22.9 207 35-260 2-235 (324)
19 3bos_A Putative DNA replicatio 99.9 1.5E-21 5E-26 181.7 16.3 213 30-261 12-241 (242)
20 2c9o_A RUVB-like 1; hexameric 99.9 9E-21 3.1E-25 193.6 23.1 125 139-264 297-438 (456)
21 1in4_A RUVB, holliday junction 99.9 4E-20 1.4E-24 181.2 23.4 209 33-261 13-248 (334)
22 1fnn_A CDC6P, cell division co 99.9 1.2E-19 4.1E-24 181.1 26.7 224 32-262 7-273 (389)
23 2v1u_A Cell division control p 99.8 8.8E-20 3E-24 181.8 23.0 220 33-263 10-276 (387)
24 2qby_B CDC6 homolog 3, cell di 99.8 2.4E-19 8.3E-24 178.8 21.6 229 31-263 9-270 (384)
25 3vfd_A Spastin; ATPase, microt 99.8 5.3E-19 1.8E-23 176.9 23.1 194 34-241 104-327 (389)
26 3eie_A Vacuolar protein sortin 99.8 5.1E-19 1.8E-23 172.4 18.7 196 33-242 6-231 (322)
27 3b9p_A CG5977-PA, isoform A; A 99.8 1.2E-18 4.2E-23 167.7 20.2 219 33-265 9-274 (297)
28 4b4t_J 26S protease regulatory 99.8 3.1E-18 1.1E-22 168.6 22.1 206 41-261 144-387 (405)
29 3syl_A Protein CBBX; photosynt 99.8 1.1E-18 3.6E-23 169.0 17.4 213 33-257 11-280 (309)
30 1lv7_A FTSH; alpha/beta domain 99.8 4.8E-18 1.6E-22 160.1 20.8 208 34-261 1-250 (257)
31 2qby_A CDC6 homolog 1, cell di 99.8 1.6E-18 5.6E-23 172.4 18.1 218 33-264 11-273 (386)
32 3d8b_A Fidgetin-like protein 1 99.8 7.8E-18 2.7E-22 166.3 22.7 194 35-242 74-298 (357)
33 2z4s_A Chromosomal replication 99.8 2.2E-18 7.6E-23 174.7 19.0 214 39-264 98-333 (440)
34 4b4t_I 26S protease regulatory 99.8 8E-18 2.7E-22 166.2 20.1 210 36-261 173-421 (437)
35 2qp9_X Vacuolar protein sortin 99.8 3.8E-18 1.3E-22 168.3 17.9 199 33-245 39-267 (355)
36 4b4t_L 26S protease subunit RP 99.8 1.1E-17 3.9E-22 167.2 21.3 206 41-261 177-420 (437)
37 1ofh_A ATP-dependent HSL prote 99.8 8.2E-18 2.8E-22 162.5 19.1 209 46-263 16-299 (310)
38 4b4t_M 26S protease regulatory 99.8 1.1E-17 3.9E-22 167.1 19.9 209 40-263 176-422 (434)
39 3h4m_A Proteasome-activating n 99.8 9.4E-18 3.2E-22 160.4 17.9 209 38-261 10-256 (285)
40 2qz4_A Paraplegin; AAA+, SPG7, 99.8 4.1E-17 1.4E-21 153.8 21.7 207 41-261 2-247 (262)
41 1xwi_A SKD1 protein; VPS4B, AA 99.8 4.4E-17 1.5E-21 158.6 20.4 195 37-244 4-228 (322)
42 3te6_A Regulatory protein SIR3 99.8 2.2E-17 7.6E-22 158.8 17.8 205 35-246 12-286 (318)
43 1l8q_A Chromosomal replication 99.7 1.9E-17 6.4E-22 161.5 17.1 186 43-245 9-214 (324)
44 2r44_A Uncharacterized protein 99.7 7.2E-18 2.5E-22 164.9 13.6 214 33-261 15-295 (331)
45 4b4t_K 26S protease regulatory 99.7 1.1E-16 3.9E-21 159.8 22.2 205 42-261 169-412 (428)
46 4b4t_H 26S protease regulatory 99.7 5.1E-17 1.7E-21 162.0 18.3 205 42-261 206-448 (467)
47 2zan_A Vacuolar protein sortin 99.7 4.1E-17 1.4E-21 165.7 16.8 195 33-244 122-350 (444)
48 3pxg_A Negative regulator of g 99.7 1.9E-17 6.6E-22 169.2 14.1 201 29-245 164-384 (468)
49 2bjv_A PSP operon transcriptio 99.7 4.9E-17 1.7E-21 153.9 15.5 212 43-257 4-251 (265)
50 1g8p_A Magnesium-chelatase 38 99.7 5.7E-17 2E-21 159.5 15.1 222 38-261 17-320 (350)
51 4fcw_A Chaperone protein CLPB; 99.7 6.1E-17 2.1E-21 156.7 14.5 187 45-245 17-277 (311)
52 2ce7_A Cell division protein F 99.7 5.9E-16 2E-20 157.1 21.5 206 40-261 11-254 (476)
53 1ojl_A Transcriptional regulat 99.7 5.6E-16 1.9E-20 149.5 17.9 210 45-258 2-247 (304)
54 3cf0_A Transitional endoplasmi 99.7 7.4E-16 2.5E-20 148.6 18.8 188 38-244 8-234 (301)
55 1jbk_A CLPB protein; beta barr 99.7 1.8E-16 6.2E-21 141.4 10.4 164 32-205 9-194 (195)
56 3hu3_A Transitional endoplasmi 99.7 1.8E-15 6.2E-20 154.7 17.9 219 37-270 196-466 (489)
57 1qvr_A CLPB protein; coiled co 99.7 4.1E-16 1.4E-20 170.8 13.3 207 30-246 155-392 (854)
58 1r6b_X CLPA protein; AAA+, N-t 99.6 2.6E-15 9E-20 162.7 19.2 223 28-261 169-431 (758)
59 2r62_A Cell division protease 99.6 3.1E-17 1.1E-21 155.4 3.1 208 38-264 4-254 (268)
60 2dhr_A FTSH; AAA+ protein, hex 99.6 2.7E-15 9.2E-20 153.2 16.9 213 32-261 19-269 (499)
61 1ixz_A ATP-dependent metallopr 99.6 1.7E-14 5.7E-19 135.5 20.0 209 36-260 7-253 (254)
62 3pxi_A Negative regulator of g 99.6 1.4E-15 4.9E-20 164.6 13.0 201 29-245 164-384 (758)
63 3m6a_A ATP-dependent protease 99.6 2.2E-15 7.5E-20 156.6 13.5 205 44-263 80-341 (543)
64 3cf2_A TER ATPase, transitiona 99.6 1.1E-15 3.9E-20 163.2 10.0 187 42-243 201-419 (806)
65 1w5s_A Origin recognition comp 99.6 6.8E-14 2.3E-18 140.4 22.3 223 33-261 13-291 (412)
66 2p65_A Hypothetical protein PF 99.6 1.8E-15 6E-20 134.4 9.4 158 30-197 7-187 (187)
67 1d2n_A N-ethylmaleimide-sensit 99.6 1.6E-14 5.3E-19 137.2 16.4 182 46-246 34-249 (272)
68 1um8_A ATP-dependent CLP prote 99.6 8.3E-15 2.9E-19 145.7 15.0 207 46-262 22-364 (376)
69 1iy2_A ATP-dependent metallopr 99.6 6.1E-14 2.1E-18 133.5 19.4 205 40-260 35-277 (278)
70 3pxi_A Negative regulator of g 99.6 7.8E-15 2.7E-19 158.9 14.6 186 45-244 491-722 (758)
71 3k1j_A LON protease, ATP-depen 99.6 1.3E-14 4.5E-19 152.9 14.8 225 33-261 29-373 (604)
72 1r6b_X CLPA protein; AAA+, N-t 99.5 3.5E-14 1.2E-18 153.9 15.2 183 45-244 458-713 (758)
73 1qvr_A CLPB protein; coiled co 99.5 9.9E-15 3.4E-19 159.9 10.6 187 45-245 558-818 (854)
74 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 3.1E-13 1.1E-17 138.1 16.2 211 45-263 22-285 (500)
75 3hws_A ATP-dependent CLP prote 99.5 1.6E-13 5.5E-18 135.7 12.1 205 46-260 16-346 (363)
76 2x8a_A Nuclear valosin-contain 99.4 9.6E-12 3.3E-16 117.9 20.1 211 41-265 6-266 (274)
77 1g41_A Heat shock protein HSLU 99.4 1.9E-12 6.6E-17 129.6 15.1 127 138-264 251-434 (444)
78 3cf2_A TER ATPase, transitiona 99.4 1.5E-13 5.3E-18 146.8 6.2 179 42-239 474-694 (806)
79 3n70_A Transport activator; si 99.4 8.7E-13 3E-17 112.8 9.1 132 46-196 2-144 (145)
80 3t15_A Ribulose bisphosphate c 99.4 1.7E-11 5.8E-16 117.4 18.7 153 68-233 38-221 (293)
81 1ny5_A Transcriptional regulat 99.4 6.7E-12 2.3E-16 125.0 16.4 212 44-259 136-383 (387)
82 3dzd_A Transcriptional regulat 99.3 1.4E-11 4.6E-16 121.8 16.0 203 45-252 129-367 (368)
83 2qen_A Walker-type ATPase; unk 99.3 7.2E-11 2.5E-15 115.4 20.8 188 43-240 10-247 (350)
84 3f9v_A Minichromosome maintena 99.3 1.3E-12 4.5E-17 136.8 7.3 206 45-261 295-585 (595)
85 3co5_A Putative two-component 99.3 4.7E-12 1.6E-16 107.9 7.5 128 46-196 5-142 (143)
86 1ypw_A Transitional endoplasmi 99.2 5.7E-11 2E-15 128.8 14.4 184 38-236 197-411 (806)
87 1ypw_A Transitional endoplasmi 99.1 1.9E-12 6.4E-17 140.4 -2.6 187 40-245 472-697 (806)
88 2fna_A Conserved hypothetical 99.1 1.3E-09 4.3E-14 106.7 16.9 187 44-242 12-253 (357)
89 3ec2_A DNA replication protein 99.0 3.9E-10 1.3E-14 99.7 7.9 132 37-178 2-144 (180)
90 3upu_A ATP-dependent DNA helic 98.9 8.5E-10 2.9E-14 112.4 7.4 145 26-176 5-164 (459)
91 1u0j_A DNA replication protein 98.9 8E-09 2.7E-13 96.1 11.4 136 53-217 89-258 (267)
92 2w58_A DNAI, primosome compone 98.8 7.6E-09 2.6E-13 93.0 7.6 69 34-104 14-90 (202)
93 3f8t_A Predicted ATPase involv 98.8 2.8E-07 9.6E-12 91.8 18.3 201 46-261 214-481 (506)
94 1tue_A Replication protein E1; 98.7 3E-08 1E-12 88.1 9.1 117 52-195 43-178 (212)
95 4akg_A Glutathione S-transfera 98.7 6.8E-08 2.3E-12 114.9 14.0 149 57-211 1260-1433(2695)
96 2kjq_A DNAA-related protein; s 98.7 3.1E-08 1.1E-12 84.6 7.2 98 68-189 38-140 (149)
97 2qgz_A Helicase loader, putati 98.6 2.4E-08 8.4E-13 96.0 4.8 69 34-104 113-189 (308)
98 1z6t_A APAF-1, apoptotic prote 98.4 5.6E-06 1.9E-10 86.8 17.3 190 40-241 119-330 (591)
99 4akg_A Glutathione S-transfera 98.3 2.6E-05 9.1E-10 93.2 21.7 169 52-244 633-838 (2695)
100 3vkg_A Dynein heavy chain, cyt 98.3 1.7E-05 5.7E-10 95.5 19.0 184 56-245 1296-1526(3245)
101 3sfz_A APAF-1, apoptotic pepti 98.2 9.5E-05 3.3E-09 83.9 21.7 190 38-239 117-328 (1249)
102 2a5y_B CED-4; apoptosis; HET: 98.2 5.1E-05 1.7E-09 78.8 17.6 180 48-237 131-335 (549)
103 1ye8_A Protein THEP1, hypothet 98.0 4.6E-05 1.6E-09 66.8 10.7 68 138-207 100-174 (178)
104 2r2a_A Uncharacterized protein 97.9 7.7E-06 2.6E-10 73.1 4.3 57 139-195 89-152 (199)
105 1jql_B DNA polymerase III, del 97.8 5.5E-05 1.9E-09 63.5 8.3 123 57-193 9-139 (140)
106 1vt4_I APAF-1 related killer D 97.8 0.00053 1.8E-08 74.9 16.7 153 47-209 130-311 (1221)
107 3vkg_A Dynein heavy chain, cyt 97.7 0.0007 2.4E-08 81.8 17.7 170 52-245 592-799 (3245)
108 2orw_A Thymidine kinase; TMTK, 97.7 6E-06 2E-10 73.0 -0.3 27 137-163 76-102 (184)
109 2vhj_A Ntpase P4, P4; non- hyd 97.5 0.0004 1.4E-08 66.1 10.4 21 69-89 126-146 (331)
110 2b8t_A Thymidine kinase; deoxy 97.5 0.00012 4.2E-09 66.3 6.6 24 69-92 15-38 (223)
111 3e1s_A Exodeoxyribonuclease V, 97.4 0.00028 9.7E-09 73.3 8.4 117 51-176 192-315 (574)
112 1g5t_A COB(I)alamin adenosyltr 97.2 0.0015 5.2E-08 57.6 9.1 98 68-177 30-163 (196)
113 1w36_D RECD, exodeoxyribonucle 97.0 0.0032 1.1E-07 65.9 11.6 104 68-176 166-298 (608)
114 2fz4_A DNA repair protein RAD2 97.0 0.0035 1.2E-07 57.3 10.2 38 50-90 95-132 (237)
115 3cmu_A Protein RECA, recombina 97.0 0.002 6.9E-08 75.0 10.3 37 57-93 1415-1454(2050)
116 2j9r_A Thymidine kinase; TK1, 96.9 0.00075 2.6E-08 60.4 4.9 101 69-175 31-136 (214)
117 1xx6_A Thymidine kinase; NESG, 96.9 0.0014 4.9E-08 57.8 6.5 23 69-91 11-33 (191)
118 1ly1_A Polynucleotide kinase; 96.9 0.0022 7.7E-08 55.4 7.6 20 69-88 5-24 (181)
119 1n0w_A DNA repair protein RAD5 96.9 0.011 3.7E-07 53.7 12.5 50 57-106 13-68 (243)
120 3hr8_A Protein RECA; alpha and 96.9 0.0056 1.9E-07 59.4 10.9 49 56-106 48-99 (356)
121 1w4r_A Thymidine kinase; type 96.9 0.0016 5.5E-08 57.3 6.4 33 69-104 23-56 (195)
122 2i3b_A HCR-ntpase, human cance 96.8 0.0031 1.1E-07 55.5 8.0 71 137-209 105-184 (189)
123 2r8r_A Sensor protein; KDPD, P 96.8 0.0086 2.9E-07 54.0 10.6 28 68-95 8-35 (228)
124 2zr9_A Protein RECA, recombina 96.8 0.005 1.7E-07 59.8 9.6 35 57-91 49-86 (349)
125 2cvh_A DNA repair and recombin 96.8 0.015 5E-07 51.9 12.2 45 57-106 9-55 (220)
126 1u94_A RECA protein, recombina 96.7 0.0089 3E-07 58.1 11.3 34 69-104 66-99 (356)
127 2orv_A Thymidine kinase; TP4A 96.7 0.0074 2.5E-07 54.5 9.9 101 69-175 22-124 (234)
128 2iut_A DNA translocase FTSK; n 96.7 0.033 1.1E-06 57.2 15.7 70 137-206 343-420 (574)
129 3dm5_A SRP54, signal recogniti 96.7 0.02 6.8E-07 57.1 13.5 27 69-95 103-129 (443)
130 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.01 3.5E-07 54.9 10.6 24 68-91 6-29 (260)
131 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.006 2.1E-07 54.9 8.6 22 69-90 26-47 (235)
132 1xp8_A RECA protein, recombina 96.6 0.016 5.4E-07 56.6 11.7 37 55-91 60-99 (366)
133 2dr3_A UPF0273 protein PH0284; 96.6 0.016 5.5E-07 52.6 11.2 22 69-90 26-47 (247)
134 3dl0_A Adenylate kinase; phosp 96.5 0.041 1.4E-06 49.0 13.5 23 69-91 3-25 (216)
135 1pzn_A RAD51, DNA repair and r 96.5 0.022 7.6E-07 55.2 12.5 22 69-90 134-155 (349)
136 3kl4_A SRP54, signal recogniti 96.5 0.027 9.1E-07 56.1 13.1 27 69-95 100-126 (433)
137 4a74_A DNA repair and recombin 96.5 0.025 8.7E-07 50.7 11.8 22 69-90 28-49 (231)
138 3cmw_A Protein RECA, recombina 96.5 0.004 1.4E-07 71.7 7.6 23 69-91 1085-1107(1706)
139 1nrj_B SR-beta, signal recogni 96.4 0.013 4.5E-07 52.2 9.6 27 65-91 11-37 (218)
140 3io5_A Recombination and repai 96.4 0.015 5.3E-07 55.1 10.1 51 56-106 13-68 (333)
141 1svm_A Large T antigen; AAA+ f 96.3 0.0057 1.9E-07 59.9 6.7 24 69-92 172-195 (377)
142 3lda_A DNA repair protein RAD5 96.3 0.03 1E-06 55.2 11.8 38 69-106 181-222 (400)
143 3zvl_A Bifunctional polynucleo 96.2 0.0057 2E-07 60.9 6.1 22 69-90 261-282 (416)
144 3llm_A ATP-dependent RNA helic 96.1 0.075 2.6E-06 48.1 13.0 20 68-87 78-97 (235)
145 3trf_A Shikimate kinase, SK; a 96.1 0.004 1.4E-07 54.2 4.1 26 67-92 6-31 (185)
146 1qhx_A CPT, protein (chloramph 96.1 0.0032 1.1E-07 54.4 3.5 24 68-91 5-28 (178)
147 2ga8_A Hypothetical 39.9 kDa p 96.1 0.005 1.7E-07 59.4 5.0 39 54-92 12-50 (359)
148 1kht_A Adenylate kinase; phosp 96.1 0.004 1.4E-07 54.3 4.0 26 68-93 5-30 (192)
149 3b6e_A Interferon-induced heli 96.0 0.0087 3E-07 53.1 6.0 38 50-90 35-72 (216)
150 3kb2_A SPBC2 prophage-derived 96.0 0.0041 1.4E-07 53.2 3.6 25 68-92 3-27 (173)
151 1nks_A Adenylate kinase; therm 95.9 0.0054 1.8E-07 53.5 3.8 26 68-93 3-28 (194)
152 2ius_A DNA translocase FTSK; n 95.8 0.046 1.6E-06 55.5 11.1 70 137-206 297-374 (512)
153 3iij_A Coilin-interacting nucl 95.8 0.0062 2.1E-07 52.8 4.1 25 67-91 12-36 (180)
154 3vkw_A Replicase large subunit 95.8 0.0046 1.6E-07 61.5 3.5 93 69-176 164-269 (446)
155 1zuh_A Shikimate kinase; alpha 95.8 0.0064 2.2E-07 52.0 4.0 27 66-92 7-33 (168)
156 3cmw_A Protein RECA, recombina 95.8 0.033 1.1E-06 64.2 10.9 36 56-91 719-757 (1706)
157 1kag_A SKI, shikimate kinase I 95.7 0.006 2.1E-07 52.3 3.6 24 68-91 6-29 (173)
158 3vaa_A Shikimate kinase, SK; s 95.7 0.0077 2.6E-07 53.2 4.3 26 67-92 26-51 (199)
159 3jvv_A Twitching mobility prot 95.7 0.044 1.5E-06 53.1 10.0 24 68-91 125-148 (356)
160 1vma_A Cell division protein F 95.7 0.035 1.2E-06 52.7 9.0 24 69-92 107-130 (306)
161 1via_A Shikimate kinase; struc 95.7 0.0067 2.3E-07 52.3 3.7 25 67-91 5-29 (175)
162 3h1t_A Type I site-specific re 95.7 0.017 5.9E-07 60.1 7.3 41 50-91 183-223 (590)
163 1gvn_B Zeta; postsegregational 95.6 0.012 4.2E-07 55.4 5.6 22 69-90 36-57 (287)
164 1ltq_A Polynucleotide kinase; 95.6 0.032 1.1E-06 52.5 8.6 22 69-90 5-26 (301)
165 3lw7_A Adenylate kinase relate 95.6 0.007 2.4E-07 51.7 3.4 22 68-90 3-24 (179)
166 3cmu_A Protein RECA, recombina 95.6 0.03 1E-06 65.4 9.4 24 69-92 1084-1107(2050)
167 2eyu_A Twitching motility prot 95.6 0.031 1.1E-06 51.7 8.0 23 69-91 28-50 (261)
168 3tlx_A Adenylate kinase 2; str 95.5 0.012 4.2E-07 53.8 5.1 24 68-91 31-54 (243)
169 3cm0_A Adenylate kinase; ATP-b 95.5 0.0086 3E-07 52.0 3.7 23 69-91 7-29 (186)
170 3e2i_A Thymidine kinase; Zn-bi 95.5 0.0097 3.3E-07 53.1 3.9 25 137-161 101-125 (219)
171 4b3f_X DNA-binding protein smu 95.5 0.024 8.2E-07 59.8 7.7 40 50-91 191-230 (646)
172 1aky_A Adenylate kinase; ATP:A 95.5 0.01 3.5E-07 53.2 4.3 25 67-91 5-29 (220)
173 2rhm_A Putative kinase; P-loop 95.5 0.0076 2.6E-07 52.6 3.3 23 69-91 8-30 (193)
174 2iyv_A Shikimate kinase, SK; t 95.4 0.009 3.1E-07 51.9 3.6 25 68-92 4-28 (184)
175 2ze6_A Isopentenyl transferase 95.4 0.0096 3.3E-07 54.9 3.9 25 68-92 3-27 (253)
176 1e6c_A Shikimate kinase; phosp 95.4 0.0096 3.3E-07 51.0 3.7 24 68-91 4-27 (173)
177 1kgd_A CASK, peripheral plasma 95.4 0.0095 3.2E-07 51.8 3.6 22 69-90 8-29 (180)
178 1t6n_A Probable ATP-dependent 95.4 0.12 4.1E-06 46.0 11.1 22 68-89 53-74 (220)
179 3bh0_A DNAB-like replicative h 95.4 0.19 6.6E-06 47.7 13.1 48 55-105 56-105 (315)
180 1kao_A RAP2A; GTP-binding prot 95.4 0.21 7.2E-06 41.5 12.1 22 69-90 6-27 (167)
181 4eun_A Thermoresistant glucoki 95.3 0.012 4.1E-07 52.0 4.2 23 68-90 31-53 (200)
182 2p5t_B PEZT; postsegregational 95.3 0.014 4.7E-07 53.8 4.7 23 69-91 35-57 (253)
183 1tev_A UMP-CMP kinase; ploop, 95.3 0.01 3.5E-07 51.8 3.7 23 69-91 6-28 (196)
184 3t61_A Gluconokinase; PSI-biol 95.3 0.0098 3.3E-07 52.6 3.6 24 68-91 20-43 (202)
185 3fb4_A Adenylate kinase; psych 95.3 0.0099 3.4E-07 53.1 3.6 24 69-92 3-26 (216)
186 3rlf_A Maltose/maltodextrin im 95.3 0.047 1.6E-06 53.3 8.6 22 69-90 32-53 (381)
187 2cdn_A Adenylate kinase; phosp 95.3 0.011 3.6E-07 52.3 3.7 24 68-91 22-45 (201)
188 2plr_A DTMP kinase, probable t 95.3 0.011 3.8E-07 52.4 3.7 24 69-92 7-30 (213)
189 1y63_A LMAJ004144AAA protein; 95.3 0.013 4.5E-07 51.0 4.1 22 68-89 12-33 (184)
190 2c95_A Adenylate kinase 1; tra 95.3 0.012 4.2E-07 51.4 3.9 25 67-91 10-34 (196)
191 1rz3_A Hypothetical protein rb 95.2 0.023 7.8E-07 50.3 5.7 41 51-91 4-47 (201)
192 1v43_A Sugar-binding transport 95.2 0.079 2.7E-06 51.6 10.0 22 69-90 40-61 (372)
193 1qf9_A UMP/CMP kinase, protein 95.2 0.013 4.6E-07 50.9 4.1 24 68-91 8-31 (194)
194 1qde_A EIF4A, translation init 95.2 0.14 4.7E-06 45.6 11.0 23 68-90 53-76 (224)
195 3sr0_A Adenylate kinase; phosp 95.2 0.012 4E-07 52.5 3.6 23 69-91 3-25 (206)
196 1zak_A Adenylate kinase; ATP:A 95.2 0.012 4.2E-07 52.8 3.8 26 67-92 6-31 (222)
197 2px0_A Flagellar biosynthesis 95.2 0.066 2.3E-06 50.5 9.0 23 69-91 108-130 (296)
198 3c8u_A Fructokinase; YP_612366 95.2 0.019 6.7E-07 51.0 5.0 40 52-91 6-47 (208)
199 3fmo_B ATP-dependent RNA helic 95.2 0.24 8.3E-06 46.6 13.0 51 41-91 91-157 (300)
200 1v5w_A DMC1, meiotic recombina 95.2 0.052 1.8E-06 52.4 8.4 52 56-107 110-167 (343)
201 2pt5_A Shikimate kinase, SK; a 95.2 0.013 4.5E-07 49.9 3.7 24 69-92 3-26 (168)
202 2bwj_A Adenylate kinase 5; pho 95.1 0.011 3.9E-07 51.8 3.3 24 68-91 14-37 (199)
203 2wsm_A Hydrogenase expression/ 95.1 0.02 6.8E-07 51.1 5.0 45 48-92 12-56 (221)
204 2yvu_A Probable adenylyl-sulfa 95.1 0.013 4.4E-07 51.0 3.6 24 69-92 16-39 (186)
205 1u8z_A RAS-related protein RAL 95.1 0.2 6.7E-06 41.8 11.0 23 68-90 6-28 (168)
206 1ak2_A Adenylate kinase isoenz 95.1 0.017 5.7E-07 52.5 4.4 25 67-91 17-41 (233)
207 1wms_A RAB-9, RAB9, RAS-relate 95.1 0.071 2.4E-06 45.3 8.3 21 69-89 10-30 (177)
208 2it1_A 362AA long hypothetical 95.1 0.074 2.5E-06 51.6 9.2 22 69-90 32-53 (362)
209 1vec_A ATP-dependent RNA helic 95.1 0.073 2.5E-06 46.7 8.6 18 67-84 41-58 (206)
210 3uie_A Adenylyl-sulfate kinase 95.1 0.02 6.7E-07 50.6 4.7 24 68-91 27-50 (200)
211 2jaq_A Deoxyguanosine kinase; 95.1 0.014 4.7E-07 51.4 3.7 24 69-92 3-26 (205)
212 1z47_A CYSA, putative ABC-tran 95.1 0.076 2.6E-06 51.4 9.2 22 69-90 44-65 (355)
213 3umf_A Adenylate kinase; rossm 95.1 0.014 4.8E-07 52.5 3.7 23 69-91 32-54 (217)
214 3dz8_A RAS-related protein RAB 95.0 0.11 3.9E-06 44.8 9.6 23 68-90 25-47 (191)
215 2vli_A Antibiotic resistance p 95.0 0.0086 2.9E-07 51.8 2.2 25 68-92 7-31 (183)
216 1zd8_A GTP:AMP phosphotransfer 95.0 0.013 4.5E-07 52.9 3.5 25 67-91 8-32 (227)
217 3be4_A Adenylate kinase; malar 95.0 0.013 4.4E-07 52.6 3.4 24 68-91 7-30 (217)
218 3tui_C Methionine import ATP-b 95.0 0.1 3.6E-06 50.5 10.0 22 69-90 57-78 (366)
219 1ukz_A Uridylate kinase; trans 95.0 0.015 5.1E-07 51.3 3.8 24 68-91 17-40 (203)
220 2qor_A Guanylate kinase; phosp 95.0 0.013 4.4E-07 52.0 3.4 22 69-90 15-36 (204)
221 2hf9_A Probable hydrogenase ni 95.0 0.038 1.3E-06 49.4 6.5 43 51-93 23-65 (226)
222 1knq_A Gluconate kinase; ALFA/ 95.0 0.015 5.1E-07 50.0 3.6 22 69-90 11-32 (175)
223 2j37_W Signal recognition part 94.9 0.24 8.2E-06 50.2 12.8 24 69-92 104-127 (504)
224 1zp6_A Hypothetical protein AT 94.9 0.012 4.1E-07 51.3 2.8 21 69-89 12-32 (191)
225 2wwf_A Thymidilate kinase, put 94.9 0.014 4.9E-07 51.7 3.3 26 68-93 12-37 (212)
226 3clv_A RAB5 protein, putative; 94.9 0.046 1.6E-06 47.5 6.6 23 68-90 9-31 (208)
227 1ex7_A Guanylate kinase; subst 94.9 0.017 5.9E-07 50.5 3.7 23 68-90 3-25 (186)
228 1z0j_A RAB-22, RAS-related pro 94.8 0.043 1.5E-06 46.2 6.1 22 69-90 9-30 (170)
229 2z0h_A DTMP kinase, thymidylat 94.8 0.018 6.1E-07 50.4 3.6 23 69-91 3-25 (197)
230 2xb4_A Adenylate kinase; ATP-b 94.8 0.018 6.1E-07 51.9 3.7 23 69-91 3-25 (223)
231 2pbr_A DTMP kinase, thymidylat 94.8 0.018 6.1E-07 50.2 3.6 23 69-91 3-25 (195)
232 2r6a_A DNAB helicase, replicat 94.7 0.23 7.8E-06 49.8 12.1 23 69-91 206-228 (454)
233 1e4v_A Adenylate kinase; trans 94.7 0.016 5.6E-07 51.7 3.3 23 69-91 3-25 (214)
234 2z43_A DNA repair and recombin 94.7 0.049 1.7E-06 52.1 6.8 52 56-107 95-152 (324)
235 2bbw_A Adenylate kinase 4, AK4 94.7 0.019 6.4E-07 52.5 3.7 25 67-91 28-52 (246)
236 1odf_A YGR205W, hypothetical 3 94.7 0.042 1.4E-06 51.7 6.2 23 69-91 34-56 (290)
237 2ce2_X GTPase HRAS; signaling 94.7 0.13 4.3E-06 42.8 8.7 23 68-90 5-27 (166)
238 2gxq_A Heat resistant RNA depe 94.7 0.12 4.2E-06 45.2 8.9 23 68-90 40-63 (207)
239 3tau_A Guanylate kinase, GMP k 94.6 0.017 5.7E-07 51.5 3.1 23 69-91 11-33 (208)
240 1rif_A DAR protein, DNA helica 94.6 0.29 9.8E-06 45.4 11.8 39 49-90 114-152 (282)
241 1z2a_A RAS-related protein RAB 94.6 0.037 1.3E-06 46.5 5.1 23 68-90 7-29 (168)
242 3pey_A ATP-dependent RNA helic 94.6 0.12 4E-06 50.1 9.4 24 64-87 42-65 (395)
243 1p9r_A General secretion pathw 94.6 0.068 2.3E-06 53.0 7.6 49 42-92 144-193 (418)
244 1nn5_A Similar to deoxythymidy 94.6 0.019 6.5E-07 51.0 3.2 26 68-93 11-36 (215)
245 1hv8_A Putative ATP-dependent 94.5 0.25 8.6E-06 47.2 11.5 24 67-90 45-68 (367)
246 3t1o_A Gliding protein MGLA; G 94.5 0.053 1.8E-06 46.9 6.0 22 69-90 17-38 (198)
247 1z0f_A RAB14, member RAS oncog 94.5 0.087 3E-06 44.7 7.3 23 68-90 17-39 (179)
248 2bdt_A BH3686; alpha-beta prot 94.5 0.021 7E-07 49.8 3.3 22 69-90 5-26 (189)
249 1zj6_A ADP-ribosylation factor 94.5 0.11 3.6E-06 44.8 8.0 24 65-88 15-38 (187)
250 2v3c_C SRP54, signal recogniti 94.5 0.036 1.2E-06 55.2 5.4 24 68-91 101-124 (432)
251 3bc1_A RAS-related protein RAB 94.5 0.062 2.1E-06 46.3 6.3 21 69-89 14-34 (195)
252 1cke_A CK, MSSA, protein (cyti 94.5 0.023 8E-07 51.0 3.6 24 68-91 7-30 (227)
253 2a9k_A RAS-related protein RAL 94.4 0.27 9.3E-06 41.8 10.4 22 69-90 21-42 (187)
254 2v54_A DTMP kinase, thymidylat 94.4 0.021 7E-07 50.3 3.1 23 68-90 6-28 (204)
255 4dkx_A RAS-related protein RAB 94.4 0.16 5.5E-06 45.4 9.0 22 69-90 16-37 (216)
256 1ls1_A Signal recognition part 94.4 0.23 7.9E-06 46.7 10.5 24 69-92 101-124 (295)
257 3tr0_A Guanylate kinase, GMP k 94.4 0.024 8.1E-07 50.0 3.4 22 69-90 10-31 (205)
258 2pez_A Bifunctional 3'-phospho 94.3 0.031 1.1E-06 48.2 4.1 22 69-90 8-29 (179)
259 4dsu_A GTPase KRAS, isoform 2B 94.3 0.21 7.1E-06 42.7 9.4 22 69-90 7-28 (189)
260 2j41_A Guanylate kinase; GMP, 94.3 0.024 8.3E-07 49.9 3.3 23 68-90 8-30 (207)
261 4gzl_A RAS-related C3 botulinu 94.3 0.02 6.7E-07 50.6 2.7 36 55-90 19-54 (204)
262 1xjc_A MOBB protein homolog; s 94.3 0.036 1.2E-06 47.6 4.2 30 66-95 4-33 (169)
263 3crm_A TRNA delta(2)-isopenten 94.3 0.03 1E-06 53.4 4.0 24 68-91 7-30 (323)
264 1c1y_A RAS-related protein RAP 94.2 0.18 6.2E-06 42.0 8.6 21 69-89 6-26 (167)
265 2pt7_A CAG-ALFA; ATPase, prote 94.2 0.12 4.1E-06 49.5 8.3 37 53-91 160-196 (330)
266 3llu_A RAS-related GTP-binding 94.2 0.064 2.2E-06 46.8 5.9 22 68-89 22-43 (196)
267 3fmp_B ATP-dependent RNA helic 94.2 0.28 9.4E-06 49.3 11.4 27 64-90 129-156 (479)
268 2f7s_A C25KG, RAS-related prot 94.1 0.22 7.4E-06 44.0 9.3 22 68-89 27-48 (217)
269 1r2q_A RAS-related protein RAB 94.1 0.098 3.4E-06 43.8 6.8 21 69-89 9-29 (170)
270 2i1q_A DNA repair and recombin 94.1 0.094 3.2E-06 49.9 7.3 35 56-90 86-122 (322)
271 3a00_A Guanylate kinase, GMP k 94.1 0.028 9.6E-07 48.9 3.3 23 69-91 4-26 (186)
272 3tw8_B RAS-related protein RAB 94.1 0.037 1.3E-06 47.1 4.1 22 68-89 11-32 (181)
273 2xxa_A Signal recognition part 94.1 0.55 1.9E-05 46.7 13.0 25 69-93 103-127 (433)
274 1m7g_A Adenylylsulfate kinase; 94.1 0.054 1.9E-06 48.1 5.2 24 68-91 27-50 (211)
275 3con_A GTPase NRAS; structural 94.1 0.083 2.9E-06 45.6 6.3 22 69-90 24-45 (190)
276 2bov_A RAla, RAS-related prote 94.0 0.14 4.9E-06 44.6 7.8 23 68-90 16-38 (206)
277 1lvg_A Guanylate kinase, GMP k 94.0 0.034 1.2E-06 49.0 3.6 22 69-90 7-28 (198)
278 3tkl_A RAS-related protein RAB 94.0 0.17 5.8E-06 43.7 8.2 22 69-90 19-40 (196)
279 3fht_A ATP-dependent RNA helic 94.0 0.3 1E-05 47.6 10.9 24 67-90 65-89 (412)
280 3ney_A 55 kDa erythrocyte memb 93.9 0.033 1.1E-06 49.2 3.4 22 69-90 22-43 (197)
281 3p32_A Probable GTPase RV1496/ 93.9 0.089 3E-06 51.0 6.8 38 66-103 79-116 (355)
282 1uj2_A Uridine-cytidine kinase 93.9 0.035 1.2E-06 50.9 3.7 25 68-92 24-48 (252)
283 3r20_A Cytidylate kinase; stru 93.9 0.037 1.3E-06 50.3 3.7 24 68-91 11-34 (233)
284 1ek0_A Protein (GTP-binding pr 93.9 0.12 4E-06 43.4 6.7 22 69-90 6-27 (170)
285 1r8s_A ADP-ribosylation factor 93.8 0.23 7.9E-06 41.3 8.5 23 68-90 2-24 (164)
286 4a1f_A DNAB helicase, replicat 93.8 0.21 7.1E-06 47.9 9.0 35 69-105 49-83 (338)
287 3eiq_A Eukaryotic initiation f 93.8 0.18 6.2E-06 49.3 9.0 23 68-90 79-102 (414)
288 1zbd_A Rabphilin-3A; G protein 93.8 0.19 6.6E-06 43.7 8.3 21 69-89 11-31 (203)
289 2hup_A RAS-related protein RAB 93.8 0.13 4.6E-06 45.0 7.2 22 68-89 31-52 (201)
290 1np6_A Molybdopterin-guanine d 93.8 0.061 2.1E-06 46.4 4.8 27 66-92 6-32 (174)
291 1z06_A RAS-related protein RAB 93.8 0.15 5.3E-06 43.9 7.4 23 68-90 22-44 (189)
292 3dkp_A Probable ATP-dependent 93.8 0.41 1.4E-05 43.2 10.6 23 68-90 68-91 (245)
293 1mh1_A RAC1; GTP-binding, GTPa 93.7 0.05 1.7E-06 46.6 4.2 22 69-90 8-29 (186)
294 2fh5_B SR-beta, signal recogni 93.7 0.27 9.4E-06 43.2 9.2 24 67-90 8-31 (214)
295 2if2_A Dephospho-COA kinase; a 93.7 0.033 1.1E-06 49.1 3.0 22 68-90 3-24 (204)
296 3ake_A Cytidylate kinase; CMP 93.7 0.042 1.4E-06 48.4 3.6 24 68-91 4-27 (208)
297 2q6t_A DNAB replication FORK h 93.6 0.77 2.6E-05 45.7 13.2 49 55-105 188-238 (444)
298 3bor_A Human initiation factor 93.6 0.16 5.6E-06 45.8 7.6 18 68-85 69-86 (237)
299 1x3s_A RAS-related protein RAB 93.6 0.2 6.7E-06 43.2 7.8 22 69-90 18-39 (195)
300 1m7b_A RND3/RHOE small GTP-bin 93.6 0.038 1.3E-06 47.6 3.1 22 69-90 10-31 (184)
301 3fho_A ATP-dependent RNA helic 93.6 0.35 1.2E-05 49.1 10.9 24 67-90 159-183 (508)
302 4f4c_A Multidrug resistance pr 93.6 0.09 3.1E-06 60.0 7.0 61 136-196 1234-1299(1321)
303 2efe_B Small GTP-binding prote 93.6 0.15 5E-06 43.4 6.9 21 69-89 15-35 (181)
304 3q72_A GTP-binding protein RAD 93.6 0.078 2.7E-06 44.4 5.0 21 68-88 4-24 (166)
305 1zd9_A ADP-ribosylation factor 93.5 0.28 9.6E-06 42.2 8.7 22 69-90 25-46 (188)
306 1jjv_A Dephospho-COA kinase; P 93.5 0.035 1.2E-06 49.1 2.8 20 69-88 5-24 (206)
307 4gp7_A Metallophosphoesterase; 93.5 0.037 1.3E-06 47.5 2.8 17 69-85 12-28 (171)
308 1bif_A 6-phosphofructo-2-kinas 93.5 0.26 8.8E-06 49.6 9.6 25 68-92 41-65 (469)
309 2g6b_A RAS-related protein RAB 93.5 0.094 3.2E-06 44.6 5.5 22 69-90 13-34 (180)
310 2il1_A RAB12; G-protein, GDP, 93.5 0.11 3.7E-06 45.1 6.0 21 69-89 29-49 (192)
311 3nh6_A ATP-binding cassette SU 93.5 0.22 7.5E-06 47.1 8.4 22 69-90 83-104 (306)
312 2p5s_A RAS and EF-hand domain 93.4 0.14 4.8E-06 44.6 6.7 22 68-89 30-51 (199)
313 3iuy_A Probable ATP-dependent 93.4 0.23 7.8E-06 44.4 8.1 18 68-85 59-76 (228)
314 3nwj_A ATSK2; P loop, shikimat 93.4 0.049 1.7E-06 50.0 3.6 25 68-92 50-74 (250)
315 1jr3_D DNA polymerase III, del 93.4 0.04 1.4E-06 53.0 3.2 88 320-407 165-255 (343)
316 1gtv_A TMK, thymidylate kinase 93.3 0.021 7.2E-07 50.7 1.1 23 69-91 3-25 (214)
317 4e22_A Cytidylate kinase; P-lo 93.3 0.049 1.7E-06 50.0 3.6 24 68-91 29-52 (252)
318 3q3j_B RHO-related GTP-binding 93.3 0.054 1.8E-06 48.2 3.7 22 69-90 30-51 (214)
319 2xau_A PRE-mRNA-splicing facto 93.3 0.26 9.1E-06 52.8 9.7 31 56-88 101-131 (773)
320 1xti_A Probable ATP-dependent 93.3 0.55 1.9E-05 45.3 11.4 21 68-88 47-67 (391)
321 2gf0_A GTP-binding protein DI- 93.3 0.31 1.1E-05 42.1 8.7 22 68-89 10-31 (199)
322 4eaq_A DTMP kinase, thymidylat 93.3 0.053 1.8E-06 49.1 3.6 24 69-92 29-52 (229)
323 1ky3_A GTP-binding protein YPT 93.3 0.085 2.9E-06 44.9 4.8 23 68-90 10-32 (182)
324 1tq4_A IIGP1, interferon-induc 93.2 0.072 2.5E-06 52.7 4.8 23 68-90 71-93 (413)
325 3tqc_A Pantothenate kinase; bi 93.2 0.098 3.4E-06 49.9 5.6 23 69-91 95-117 (321)
326 2fwr_A DNA repair protein RAD2 93.2 0.21 7.3E-06 50.1 8.4 38 50-90 95-132 (472)
327 3asz_A Uridine kinase; cytidin 93.2 0.049 1.7E-06 48.3 3.2 23 69-91 9-31 (211)
328 3lv8_A DTMP kinase, thymidylat 93.2 0.09 3.1E-06 47.8 5.0 25 69-93 30-54 (236)
329 3ly5_A ATP-dependent RNA helic 93.2 0.48 1.6E-05 43.5 10.2 17 68-84 93-109 (262)
330 2ehv_A Hypothetical protein PH 93.1 0.048 1.7E-06 49.5 3.2 20 69-88 33-52 (251)
331 1uf9_A TT1252 protein; P-loop, 93.1 0.053 1.8E-06 47.5 3.3 22 68-89 10-31 (203)
332 3b5x_A Lipid A export ATP-bind 93.1 0.26 9E-06 51.0 9.1 22 69-90 372-393 (582)
333 1s96_A Guanylate kinase, GMP k 93.1 0.054 1.9E-06 48.7 3.4 22 69-90 19-40 (219)
334 2gk6_A Regulator of nonsense t 93.1 0.1 3.5E-06 54.6 6.0 39 50-91 182-220 (624)
335 2eyq_A TRCF, transcription-rep 93.1 0.64 2.2E-05 52.2 12.8 38 50-87 608-645 (1151)
336 1z6g_A Guanylate kinase; struc 93.1 0.053 1.8E-06 48.6 3.3 22 69-90 26-47 (218)
337 1htw_A HI0065; nucleotide-bind 93.1 0.061 2.1E-06 45.7 3.5 22 69-90 36-57 (158)
338 3b85_A Phosphate starvation-in 93.1 0.058 2E-06 48.0 3.5 42 38-89 4-45 (208)
339 3kkq_A RAS-related protein M-R 93.0 0.14 4.9E-06 43.6 6.0 22 69-90 21-42 (183)
340 2grj_A Dephospho-COA kinase; T 93.0 0.063 2.1E-06 47.2 3.6 23 69-91 15-37 (192)
341 1j8m_F SRP54, signal recogniti 93.0 0.71 2.4E-05 43.3 11.2 24 69-92 101-124 (297)
342 1q0u_A Bstdead; DEAD protein, 93.0 0.26 8.9E-06 43.7 7.9 18 68-85 43-60 (219)
343 2fg5_A RAB-22B, RAS-related pr 93.0 0.16 5.5E-06 43.9 6.3 22 69-90 26-47 (192)
344 3foz_A TRNA delta(2)-isopenten 93.0 0.072 2.5E-06 50.3 4.2 23 69-91 13-35 (316)
345 2j1l_A RHO-related GTP-binding 93.0 0.11 3.8E-06 46.0 5.3 21 69-89 37-57 (214)
346 2qt1_A Nicotinamide riboside k 92.9 0.039 1.3E-06 48.8 2.1 22 69-90 24-45 (207)
347 1taf_B TFIID TBP associated fa 92.9 0.3 1E-05 34.9 6.3 59 203-261 10-69 (70)
348 2oca_A DAR protein, ATP-depend 92.9 0.43 1.5E-05 48.3 10.3 38 50-90 115-152 (510)
349 3a8t_A Adenylate isopentenyltr 92.9 0.034 1.2E-06 53.2 1.8 25 68-92 42-66 (339)
350 2oxc_A Probable ATP-dependent 92.9 0.48 1.6E-05 42.4 9.5 23 68-90 63-86 (230)
351 3reg_A RHO-like small GTPase; 92.9 0.059 2E-06 46.8 3.2 22 69-90 26-47 (194)
352 1znw_A Guanylate kinase, GMP k 92.9 0.061 2.1E-06 47.6 3.4 22 69-90 23-44 (207)
353 2bme_A RAB4A, RAS-related prot 92.9 0.12 4E-06 44.3 5.2 22 69-90 13-34 (186)
354 3bgw_A DNAB-like replicative h 92.8 0.54 1.8E-05 46.9 10.6 48 55-105 185-234 (444)
355 2zts_A Putative uncharacterize 92.8 0.035 1.2E-06 50.4 1.7 21 69-89 33-53 (251)
356 1gwn_A RHO-related GTP-binding 92.8 0.058 2E-06 47.7 3.1 23 68-90 30-52 (205)
357 3ber_A Probable ATP-dependent 92.8 0.32 1.1E-05 44.3 8.3 17 68-84 82-98 (249)
358 2ew1_A RAS-related protein RAB 92.8 0.11 3.9E-06 45.6 5.0 23 68-90 28-50 (201)
359 2y8e_A RAB-protein 6, GH09086P 92.7 0.099 3.4E-06 44.3 4.5 21 69-89 17-37 (179)
360 1g8f_A Sulfate adenylyltransfe 92.7 0.11 3.6E-06 52.9 5.2 43 50-92 377-421 (511)
361 4edh_A DTMP kinase, thymidylat 92.7 0.2 6.8E-06 44.7 6.5 27 69-95 9-35 (213)
362 2ffh_A Protein (FFH); SRP54, s 92.7 0.87 3E-05 45.0 11.7 25 69-93 101-125 (425)
363 2ged_A SR-beta, signal recogni 92.6 0.14 4.8E-06 44.2 5.4 23 68-90 50-72 (193)
364 3d3q_A TRNA delta(2)-isopenten 92.6 0.069 2.4E-06 51.2 3.5 24 68-91 9-32 (340)
365 3gj0_A GTP-binding nuclear pro 92.5 0.061 2.1E-06 47.9 2.9 20 69-88 18-37 (221)
366 2qmh_A HPR kinase/phosphorylas 92.5 0.059 2E-06 47.4 2.7 23 69-91 37-59 (205)
367 3exa_A TRNA delta(2)-isopenten 92.5 0.069 2.3E-06 50.6 3.2 24 68-91 5-28 (322)
368 2atx_A Small GTP binding prote 92.5 0.063 2.1E-06 46.6 2.8 23 68-90 20-42 (194)
369 1vht_A Dephospho-COA kinase; s 92.5 0.074 2.5E-06 47.4 3.4 20 69-88 7-26 (218)
370 2dyk_A GTP-binding protein; GT 92.4 0.081 2.8E-06 44.0 3.4 23 67-89 2-24 (161)
371 1ewq_A DNA mismatch repair pro 92.4 0.6 2E-05 49.9 10.7 22 69-90 579-600 (765)
372 2wjy_A Regulator of nonsense t 92.3 0.14 4.9E-06 55.0 6.0 39 50-91 358-396 (800)
373 2z83_A Helicase/nucleoside tri 92.3 0.33 1.1E-05 48.7 8.3 22 68-89 23-45 (459)
374 3e70_C DPA, signal recognition 92.2 0.26 8.8E-06 47.1 7.1 24 69-92 132-155 (328)
375 3ld9_A DTMP kinase, thymidylat 92.2 0.15 5E-06 45.9 5.0 33 60-92 15-47 (223)
376 3cph_A RAS-related protein SEC 92.2 0.19 6.4E-06 44.1 5.7 22 68-89 22-43 (213)
377 1s2m_A Putative ATP-dependent 92.1 0.83 2.8E-05 44.3 10.9 20 68-87 60-79 (400)
378 2yc2_C IFT27, small RAB-relate 92.1 0.084 2.9E-06 46.1 3.3 22 68-89 22-43 (208)
379 1sky_E F1-ATPase, F1-ATP synth 92.1 0.21 7.2E-06 50.0 6.4 36 53-91 141-176 (473)
380 1fzq_A ADP-ribosylation factor 92.1 0.16 5.6E-06 43.5 5.0 22 68-89 18-39 (181)
381 2v6i_A RNA helicase; membrane, 92.1 0.56 1.9E-05 46.6 9.6 20 68-87 4-24 (431)
382 2h92_A Cytidylate kinase; ross 92.1 0.094 3.2E-06 46.6 3.6 24 68-91 5-28 (219)
383 2j0v_A RAC-like GTP-binding pr 92.0 0.07 2.4E-06 47.1 2.6 22 69-90 12-33 (212)
384 1nlf_A Regulatory protein REPA 92.0 0.082 2.8E-06 49.2 3.2 23 69-91 33-55 (279)
385 1wp9_A ATP-dependent RNA helic 92.0 0.48 1.7E-05 46.9 9.2 36 51-90 12-47 (494)
386 3pqc_A Probable GTP-binding pr 92.0 0.45 1.5E-05 40.8 7.9 23 67-89 24-46 (195)
387 4dra_A Centromere protein S; D 92.0 0.25 8.6E-06 38.8 5.4 64 201-264 33-96 (113)
388 2jeo_A Uridine-cytidine kinase 92.0 0.097 3.3E-06 47.7 3.6 23 69-91 28-50 (245)
389 3lnc_A Guanylate kinase, GMP k 91.9 0.056 1.9E-06 48.7 1.9 22 69-90 30-52 (231)
390 2www_A Methylmalonic aciduria 91.9 0.21 7.2E-06 48.2 6.1 24 68-91 76-99 (349)
391 1q3t_A Cytidylate kinase; nucl 91.8 0.1 3.6E-06 47.1 3.6 23 69-91 19-41 (236)
392 1rj9_A FTSY, signal recognitio 91.8 0.24 8.2E-06 46.8 6.2 24 69-92 105-128 (304)
393 4tmk_A Protein (thymidylate ki 91.7 0.19 6.5E-06 44.8 5.1 25 69-93 6-30 (213)
394 3thx_A DNA mismatch repair pro 91.7 0.84 2.9E-05 49.8 11.1 19 69-87 665-683 (934)
395 2oap_1 GSPE-2, type II secreti 91.6 0.13 4.5E-06 52.3 4.4 40 50-91 246-285 (511)
396 3kta_A Chromosome segregation 91.6 0.11 3.8E-06 44.7 3.4 24 69-92 29-52 (182)
397 3qf4_A ABC transporter, ATP-bi 91.6 0.18 6.3E-06 52.3 5.6 22 69-90 372-393 (587)
398 2o52_A RAS-related protein RAB 91.5 0.21 7.1E-06 43.6 5.2 22 68-89 27-48 (200)
399 1sq5_A Pantothenate kinase; P- 91.5 0.12 4.2E-06 48.9 3.9 23 69-91 83-105 (308)
400 4a82_A Cystic fibrosis transme 91.5 0.14 4.9E-06 53.0 4.7 22 69-90 370-391 (578)
401 1q57_A DNA primase/helicase; d 91.5 1.3 4.6E-05 44.7 11.9 37 69-106 245-281 (503)
402 3szr_A Interferon-induced GTP- 91.5 0.57 2E-05 48.7 9.2 25 66-90 45-69 (608)
403 2v9p_A Replication protein E1; 91.4 0.11 3.9E-06 49.0 3.5 22 69-90 129-150 (305)
404 1cr0_A DNA primase/helicase; R 91.4 0.1 3.5E-06 49.0 3.2 23 69-91 38-60 (296)
405 1a7j_A Phosphoribulokinase; tr 91.4 0.04 1.4E-06 51.8 0.3 24 68-91 7-30 (290)
406 2b6h_A ADP-ribosylation factor 91.4 0.19 6.3E-06 43.7 4.7 21 68-88 31-51 (192)
407 2f9l_A RAB11B, member RAS onco 91.4 0.12 4E-06 45.2 3.3 22 69-90 8-29 (199)
408 3aez_A Pantothenate kinase; tr 91.4 0.12 4.1E-06 49.1 3.6 23 69-91 93-115 (312)
409 2xzl_A ATP-dependent helicase 91.4 0.2 6.7E-06 54.1 5.7 38 50-90 362-399 (802)
410 1fuu_A Yeast initiation factor 91.3 1.2 4E-05 43.0 10.9 23 68-90 60-83 (394)
411 3v9r_A MHF1, uncharacterized p 91.3 0.22 7.4E-06 37.6 4.2 53 212-264 29-81 (90)
412 2ewv_A Twitching motility prot 91.3 0.12 4E-06 50.5 3.5 23 69-91 139-161 (372)
413 2gco_A H9, RHO-related GTP-bin 91.2 0.15 5E-06 44.6 3.8 23 68-90 27-49 (201)
414 2f6r_A COA synthase, bifunctio 91.2 0.1 3.6E-06 48.7 3.0 20 69-88 78-97 (281)
415 2j0s_A ATP-dependent RNA helic 91.2 1.2 4E-05 43.4 10.8 20 68-87 76-95 (410)
416 1oix_A RAS-related protein RAB 91.2 0.11 3.8E-06 45.1 3.0 22 69-90 32-53 (191)
417 1wf3_A GTP-binding protein; GT 91.1 1.3 4.5E-05 41.5 10.6 21 69-89 10-30 (301)
418 1wb9_A DNA mismatch repair pro 91.1 1.3 4.5E-05 47.5 11.8 21 69-89 610-630 (800)
419 3v9p_A DTMP kinase, thymidylat 91.1 0.098 3.4E-06 47.2 2.6 24 69-92 28-51 (227)
420 4dhe_A Probable GTP-binding pr 91.1 0.65 2.2E-05 40.9 8.1 23 67-89 30-52 (223)
421 3eph_A TRNA isopentenyltransfe 91.1 0.13 4.6E-06 50.3 3.7 23 69-91 5-27 (409)
422 3fe2_A Probable ATP-dependent 91.0 1 3.5E-05 40.5 9.5 17 68-84 68-84 (242)
423 2axn_A 6-phosphofructo-2-kinas 91.0 0.11 3.7E-06 53.2 3.1 24 69-92 38-61 (520)
424 2ocp_A DGK, deoxyguanosine kin 90.9 0.12 4.1E-06 46.9 3.0 23 69-91 5-27 (241)
425 3tif_A Uncharacterized ABC tra 90.9 0.11 3.7E-06 47.2 2.6 22 69-90 34-55 (235)
426 2f1r_A Molybdopterin-guanine d 90.9 0.075 2.5E-06 45.7 1.5 25 68-92 4-28 (171)
427 2onk_A Molybdate/tungstate ABC 90.9 0.13 4.4E-06 46.8 3.2 23 68-90 26-48 (240)
428 2xgj_A ATP-dependent RNA helic 90.7 1.6 5.5E-05 48.2 12.3 52 33-87 69-122 (1010)
429 3th5_A RAS-related C3 botulinu 90.1 0.046 1.6E-06 48.0 0.0 23 67-89 31-53 (204)
430 3b9q_A Chloroplast SRP recepto 90.7 0.15 5.3E-06 48.1 3.6 23 69-91 103-125 (302)
431 1m8p_A Sulfate adenylyltransfe 90.7 0.17 6E-06 52.2 4.3 23 69-91 399-421 (573)
432 3gmt_A Adenylate kinase; ssgci 90.7 0.17 5.8E-06 45.7 3.7 24 69-92 11-34 (230)
433 2zej_A Dardarin, leucine-rich 90.6 0.12 4.2E-06 44.4 2.7 21 68-88 4-24 (184)
434 3thx_B DNA mismatch repair pro 90.6 1.2 3.9E-05 48.6 10.8 20 69-88 676-695 (918)
435 2nzj_A GTP-binding protein REM 90.6 0.15 5.2E-06 43.0 3.2 22 68-89 6-27 (175)
436 2pcj_A ABC transporter, lipopr 90.6 0.11 3.7E-06 46.8 2.3 22 69-90 33-54 (224)
437 2wji_A Ferrous iron transport 90.5 0.15 5.2E-06 42.9 3.1 21 69-89 6-26 (165)
438 2gza_A Type IV secretion syste 90.5 0.15 5E-06 49.6 3.4 35 55-91 166-200 (361)
439 1sgw_A Putative ABC transporte 90.5 0.12 4.3E-06 46.1 2.7 22 69-90 38-59 (214)
440 1yrb_A ATP(GTP)binding protein 90.5 0.28 9.6E-06 44.8 5.2 34 69-103 17-50 (262)
441 2gks_A Bifunctional SAT/APS ki 90.5 0.25 8.6E-06 50.7 5.2 43 50-92 354-398 (546)
442 3fdi_A Uncharacterized protein 90.5 0.17 5.7E-06 44.7 3.5 28 68-95 8-35 (201)
443 2cbz_A Multidrug resistance-as 90.4 0.12 4.2E-06 46.9 2.6 22 69-90 34-55 (237)
444 1z08_A RAS-related protein RAB 90.4 0.17 5.8E-06 42.4 3.4 21 69-89 9-29 (170)
445 3iev_A GTP-binding protein ERA 90.4 1.3 4.4E-05 41.7 9.9 21 69-89 13-33 (308)
446 2lkc_A Translation initiation 90.4 0.21 7.3E-06 42.2 4.0 23 67-89 9-31 (178)
447 3tqf_A HPR(Ser) kinase; transf 90.4 0.15 5.1E-06 43.8 2.9 22 68-89 18-39 (181)
448 3tmk_A Thymidylate kinase; pho 90.4 0.16 5.4E-06 45.5 3.2 25 68-92 7-31 (216)
449 1f2t_A RAD50 ABC-ATPase; DNA d 90.3 0.18 6.3E-06 42.1 3.4 24 69-92 26-49 (149)
450 4f4c_A Multidrug resistance pr 90.2 0.29 1E-05 55.8 6.0 23 69-91 447-469 (1321)
451 2va8_A SSO2462, SKI2-type heli 90.1 0.44 1.5E-05 50.6 7.0 20 67-86 47-66 (715)
452 1c9k_A COBU, adenosylcobinamid 90.1 0.16 5.3E-06 44.1 2.8 21 69-89 2-22 (180)
453 1jr3_A DNA polymerase III subu 90.1 0.81 2.8E-05 43.9 8.4 86 321-407 202-290 (373)
454 3r7w_A Gtpase1, GTP-binding pr 90.1 0.66 2.2E-05 43.7 7.5 21 69-89 6-26 (307)
455 1g16_A RAS-related protein SEC 90.0 0.17 5.7E-06 42.4 2.9 22 68-89 5-26 (170)
456 1b0u_A Histidine permease; ABC 90.0 0.14 4.9E-06 47.2 2.7 22 69-90 35-56 (262)
457 1taf_A TFIID TBP associated fa 90.0 0.71 2.4E-05 32.8 5.7 59 203-261 5-64 (68)
458 3sop_A Neuronal-specific septi 89.9 0.17 5.8E-06 46.9 3.2 22 69-90 5-26 (270)
459 2d2e_A SUFC protein; ABC-ATPas 89.9 0.17 5.9E-06 46.3 3.1 21 69-89 32-52 (250)
460 4dcu_A GTP-binding protein ENG 89.9 0.73 2.5E-05 46.1 8.0 24 66-89 23-46 (456)
461 2zpa_A Uncharacterized protein 89.9 1.1 3.7E-05 46.8 9.4 81 68-158 194-276 (671)
462 1p5z_B DCK, deoxycytidine kina 89.8 0.079 2.7E-06 48.8 0.8 24 68-91 26-49 (263)
463 3q85_A GTP-binding protein REM 89.8 0.19 6.5E-06 42.1 3.1 21 68-88 4-24 (169)
464 2jlq_A Serine protease subunit 89.8 0.79 2.7E-05 45.7 8.2 20 68-87 21-41 (451)
465 2zu0_C Probable ATP-dependent 89.8 0.18 6.1E-06 46.7 3.2 41 137-177 182-224 (267)
466 3gfo_A Cobalt import ATP-bindi 89.8 0.15 5.2E-06 47.4 2.7 22 69-90 37-58 (275)
467 2erx_A GTP-binding protein DI- 89.8 0.19 6.7E-06 42.0 3.2 22 68-89 5-26 (172)
468 1mv5_A LMRA, multidrug resista 89.8 0.15 5.3E-06 46.4 2.7 22 69-90 31-52 (243)
469 1g6h_A High-affinity branched- 89.7 0.15 5.1E-06 46.9 2.6 22 69-90 36-57 (257)
470 3hjn_A DTMP kinase, thymidylat 89.7 0.48 1.6E-05 41.5 5.8 27 69-95 3-29 (197)
471 3hdt_A Putative kinase; struct 89.7 0.18 6.2E-06 45.3 3.0 24 69-92 17-40 (223)
472 2ff7_A Alpha-hemolysin translo 89.6 0.16 5.3E-06 46.5 2.6 22 69-90 38-59 (247)
473 2pze_A Cystic fibrosis transme 89.6 0.16 5.5E-06 45.8 2.7 22 69-90 37-58 (229)
474 3l9o_A ATP-dependent RNA helic 89.6 0.96 3.3E-05 50.5 9.4 21 68-88 201-221 (1108)
475 3fvq_A Fe(3+) IONS import ATP- 89.6 0.16 5.4E-06 49.2 2.8 22 69-90 33-54 (359)
476 1ji0_A ABC transporter; ATP bi 89.6 0.16 5.4E-06 46.3 2.6 22 69-90 35-56 (240)
477 1upt_A ARL1, ADP-ribosylation 89.6 0.21 7.2E-06 41.9 3.3 22 68-89 9-30 (171)
478 3qf4_B Uncharacterized ABC tra 89.5 0.72 2.5E-05 47.9 7.9 22 69-90 384-405 (598)
479 2olj_A Amino acid ABC transpor 89.5 0.16 5.6E-06 46.9 2.7 22 69-90 53-74 (263)
480 4a2p_A RIG-I, retinoic acid in 89.5 1.5 5.2E-05 44.4 10.3 22 68-89 24-45 (556)
481 1svi_A GTP-binding protein YSX 89.5 0.21 7.1E-06 43.1 3.2 24 66-89 23-46 (195)
482 1lw7_A Transcriptional regulat 89.4 0.18 6.3E-06 48.9 3.1 23 69-91 173-195 (365)
483 2hxs_A RAB-26, RAS-related pro 89.4 0.19 6.7E-06 42.5 3.0 21 69-89 9-29 (178)
484 3cr8_A Sulfate adenylyltranfer 89.4 0.22 7.4E-06 51.2 3.7 24 69-92 372-395 (552)
485 2og2_A Putative signal recogni 89.4 0.22 7.6E-06 48.2 3.6 23 69-91 160-182 (359)
486 2wjg_A FEOB, ferrous iron tran 89.4 0.21 7.1E-06 42.8 3.1 21 69-89 10-30 (188)
487 2oil_A CATX-8, RAS-related pro 89.4 0.22 7.6E-06 42.9 3.3 23 68-90 27-49 (193)
488 1zu4_A FTSY; GTPase, signal re 89.3 0.23 7.8E-06 47.3 3.6 24 69-92 108-131 (320)
489 2qi9_C Vitamin B12 import ATP- 89.3 0.18 6E-06 46.2 2.7 22 69-90 29-50 (249)
490 2qm8_A GTPase/ATPase; G protei 89.3 0.25 8.7E-06 47.4 3.9 23 69-91 58-80 (337)
491 1vpl_A ABC transporter, ATP-bi 89.2 0.18 6E-06 46.4 2.7 22 69-90 44-65 (256)
492 2fn4_A P23, RAS-related protei 89.2 0.21 7.1E-06 42.3 3.0 21 69-89 12-32 (181)
493 2ghi_A Transport protein; mult 89.2 0.18 6E-06 46.5 2.6 22 69-90 49-70 (260)
494 2ixe_A Antigen peptide transpo 89.1 0.18 6E-06 46.9 2.6 42 136-177 173-217 (271)
495 4g1u_C Hemin import ATP-bindin 89.1 0.18 6.1E-06 46.7 2.7 22 69-90 40-61 (266)
496 3i5x_A ATP-dependent RNA helic 89.1 2.7 9.1E-05 42.9 11.9 17 67-83 112-128 (563)
497 2yyz_A Sugar ABC transporter, 89.1 0.2 7E-06 48.4 3.1 22 69-90 32-53 (359)
498 1moz_A ARL1, ADP-ribosylation 89.1 0.19 6.6E-06 42.8 2.7 21 68-88 20-40 (183)
499 2ihy_A ABC transporter, ATP-bi 89.1 0.18 6.3E-06 47.0 2.7 22 69-90 50-71 (279)
500 3ihw_A Centg3; RAS, centaurin, 89.1 0.25 8.4E-06 42.6 3.4 22 69-90 23-44 (184)
No 1
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=8.1e-41 Score=329.75 Aligned_cols=316 Identities=36% Similarity=0.629 Sum_probs=276.1
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChH
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQ 111 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~ 111 (456)
+.||.++|+|.+|++++|++.+++.|..+++.++++|++|+||||+|||++++++++.+.+..+...+.++|+++..+.+
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 91 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGID 91 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHH
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHH
Confidence 68999999999999999999999999999999999899999999999999999999998876666678899998877888
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccCCceEE
Q psy12150 112 VIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191 (456)
Q Consensus 112 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~r~~~i 191 (456)
.+++.+..+....... .++++++||||+|.++.+.++.|++++++++..+++|+++|...++.+++.+||..+
T Consensus 92 ~ir~~i~~~~~~~~~~-------~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 92 VVRNQIKDFASTRQIF-------SKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp HHHTHHHHHHHBCCSS-------SCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHHHHHHHHHhhcccC-------CCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeE
Confidence 8887777666432111 025689999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhC---CCCCCHHHHHHHhCCCCHHHH
Q psy12150 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG---GEGIVNEDVLEVTGVIPKPWI 268 (456)
Q Consensus 192 ~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~---~~~It~~~v~~~~~~~~~~~i 268 (456)
.|.+++.+++.+++..+++++++.+++++++.+++.++||+|.+++.++.++.+++ ...||.++|.++++...++.+
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~~~~~~~i 244 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDL 244 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTTCCCHHHH
T ss_pred eccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999998876653 137999999999999988888
Q ss_pred HHHHcccchHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhhcC
Q psy12150 269 EKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKG 348 (456)
Q Consensus 269 ~~l~~~~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~~~lq~~~~~~~ 348 (456)
+++++.
T Consensus 245 ~~l~~~-------------------------------------------------------------------------- 250 (340)
T 1sxj_C 245 KAVLKS-------------------------------------------------------------------------- 250 (340)
T ss_dssp HHHHHH--------------------------------------------------------------------------
T ss_pred HHHHHH--------------------------------------------------------------------------
Confidence 888777
Q ss_pred CCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHH
Q psy12150 349 GEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASSLS-DKQKALILEKLAE 426 (456)
Q Consensus 349 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~s~~di~~~l~~~~~~~~~~~-~~~~~~~~~~l~~ 426 (456)
+..+++.++...+..++. +|++..+|+..|+..+... .++ +..+.+++..+++
T Consensus 251 ------------------------i~~~~~~~al~~l~~l~~~~g~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~l~~ 305 (340)
T 1sxj_C 251 ------------------------ILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDY-ELQNEETRVHLLTKLAD 305 (340)
T ss_dssp ------------------------HHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHH
T ss_pred ------------------------HHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCCcHHHHHHHHHHHHH
Confidence 001333444445666665 7888888888888888765 688 9999999999999
Q ss_pred HHhhhhcCCChhHHHHHHHHHHHHHhc
Q psy12150 427 CNARLQDGASEYIQILDLGSIVIKANK 453 (456)
Q Consensus 427 ~~~~l~~g~~~~~ql~~l~~~~~~~~~ 453 (456)
+|++|+.|+++.+|+..++..++.+++
T Consensus 306 ~~~~l~~g~~~~l~le~l~~~l~~~~~ 332 (340)
T 1sxj_C 306 IEYSISKGGNDQIQGSAVIGAIKASFE 332 (340)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998864
No 2
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=2e-39 Score=320.99 Aligned_cols=327 Identities=46% Similarity=0.782 Sum_probs=266.6
Q ss_pred CCCCCCCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCC-ccccceEEeeC
Q psy12150 26 GKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD-MYRERILELNA 104 (456)
Q Consensus 26 ~~~~~~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~-~~~~~~~e~n~ 104 (456)
..++....||.++|+|.+|++++|++++++.+..++..+..++++|+||||+|||++++++++.+... .+...+.++++
T Consensus 18 ~~~~~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 18 AEQSLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp --------CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred hhhcccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 34456778999999999999999999999999999999988889999999999999999999987532 23456888998
Q ss_pred CCCcChHHHHHHHHHHHHhhccCCCC---CCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCccccc
Q psy12150 105 SDDRGIQVIRDKVKTFAQQTASGFNQ---DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCII 181 (456)
Q Consensus 105 ~~~~~~~~i~~~l~~~~~~~~~~~~~---~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~ 181 (456)
++..+...+.+.+..+.......... ...+.+++++|||||++.+....++.|++++++++..+++|++++.+.++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~ 177 (353)
T 1sxj_D 98 SDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRII 177 (353)
T ss_dssp SSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred ccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCc
Confidence 88777777776666655432110000 011223567999999999999999999999999988889999999999999
Q ss_pred ccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCC----CCCHHHHH
Q psy12150 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE----GIVNEDVL 257 (456)
Q Consensus 182 ~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~----~It~~~v~ 257 (456)
+++.+||..++|.+++.+++..++..++..+++.+++++++.|++.++||+|.+++.+++++.++++. .||.++|.
T Consensus 178 ~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~ 257 (353)
T 1sxj_D 178 DPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVE 257 (353)
T ss_dssp HHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHH
T ss_pred chhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988776422 79999999
Q ss_pred HHhCCCCHHHHHHHHcccchHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHHHHH
Q psy12150 258 EVTGVIPKPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAI 337 (456)
Q Consensus 258 ~~~~~~~~~~i~~l~~~~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~ 337 (456)
++++....+.+++++++
T Consensus 258 ~~~~~~~~~~~~~l~~~--------------------------------------------------------------- 274 (353)
T 1sxj_D 258 ELAGVVPHDILIEIVEK--------------------------------------------------------------- 274 (353)
T ss_dssp HHHTCCCSHHHHHHHHH---------------------------------------------------------------
T ss_pred HHhCCCCHHHHHHHHHH---------------------------------------------------------------
Confidence 99998888888888776
Q ss_pred HHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHH
Q psy12150 338 TCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQK 417 (456)
Q Consensus 338 ~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~~~~~~~~~~~~~~ 417 (456)
+..+++..+...+..+...|++..+|+..+.+.+.....+++..+
T Consensus 275 -----------------------------------~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~ 319 (353)
T 1sxj_D 275 -----------------------------------VKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFK 319 (353)
T ss_dssp -----------------------------------HHSCCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCSSSCHHHH
T ss_pred -----------------------------------HhcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCHHHH
Confidence 001223333335555666777777777777777776657999999
Q ss_pred HHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHH
Q psy12150 418 ALILEKLAECNARLQDGASEYIQILDLGSIVIK 450 (456)
Q Consensus 418 ~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~ 450 (456)
.+++..++++|++|+.|+++.+|+..+++.++.
T Consensus 320 ~~~~~~l~~~~~~l~~g~~~~l~l~~~~~~~~~ 352 (353)
T 1sxj_D 320 NQISWLLFTTDSRLNNGTNEHIQLLNLLVKISQ 352 (353)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Confidence 999999999999999999999999999999875
No 3
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=2.6e-38 Score=309.50 Aligned_cols=317 Identities=40% Similarity=0.675 Sum_probs=269.2
Q ss_pred CCCCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCc
Q psy12150 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (456)
Q Consensus 29 ~~~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~ 108 (456)
...+.||.++|+|.+|++++|++..++.+..++..++.++++|+||||+|||++++++++.+.+..+...++++++++..
T Consensus 9 ~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (327)
T 1iqp_A 9 KVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER 88 (327)
T ss_dssp HHTTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH
T ss_pred cccCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC
Confidence 34578999999999999999999999999999999998889999999999999999999998665555568889988765
Q ss_pred ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccCCc
Q psy12150 109 GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRC 188 (456)
Q Consensus 109 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~r~ 188 (456)
+.+.+++.+..+........ +++++|||||++.++.+.++.|++++++++..+++|++++.+.++.+++.+||
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~-------~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 89 GINVIREKVKEFARTKPIGG-------ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp HHHTTHHHHHHHHHSCCGGG-------CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred chHHHHHHHHHHHhhCCcCC-------CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC
Confidence 55556666655543221110 25679999999999999999999999999889999999999999999999999
Q ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCCHHHH
Q psy12150 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268 (456)
Q Consensus 189 ~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~~~~~~i 268 (456)
..+.|.+++.+++..++..++.++++.+++++++.|++.++||+|.+++.+++++.+ .+.||.++|.++++...++.+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~--~~~i~~~~v~~~~~~~~~~~i 239 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAAL--DKKITDENVFMVASRARPEDI 239 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSEECHHHHHHHTTCCCHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999988764 347999999999999999888
Q ss_pred HHHHcccchHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhhcC
Q psy12150 269 EKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKG 348 (456)
Q Consensus 269 ~~l~~~~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~~~lq~~~~~~~ 348 (456)
++++++ ++
T Consensus 240 ~~l~~~-----------------------------~~------------------------------------------- 247 (327)
T 1iqp_A 240 REMMLL-----------------------------AL------------------------------------------- 247 (327)
T ss_dssp HHHHHH-----------------------------HH-------------------------------------------
T ss_pred HHHHHH-----------------------------HH-------------------------------------------
Confidence 888776 00
Q ss_pred CCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHH-HcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy12150 349 GEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLI-LEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 427 (456)
Q Consensus 349 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~s~~di~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 427 (456)
.+++..+...+..++ .+|++..+++..|.+.+.+. .++...+.+++..++++
T Consensus 248 --------------------------~~~~~~~~~~~~~ll~~~g~~~~~i~~~l~~~~~~~-~~~~~~l~~~~~~l~~~ 300 (327)
T 1iqp_A 248 --------------------------KGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNL-PIEEPKKVLLADKIGEY 300 (327)
T ss_dssp --------------------------HTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGS-SSCHHHHHHHHHHHHHH
T ss_pred --------------------------cCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHH
Confidence 112222333444454 67888888888888877765 68999999999999999
Q ss_pred HhhhhcCCChhHHHHHHHHHHHHHhc
Q psy12150 428 NARLQDGASEYIQILDLGSIVIKANK 453 (456)
Q Consensus 428 ~~~l~~g~~~~~ql~~l~~~~~~~~~ 453 (456)
|++++.|+++.+++..++..++.+.+
T Consensus 301 ~~~lk~~~~~~~~le~l~~~l~~~~~ 326 (327)
T 1iqp_A 301 NFRLVEGANEIIQLEALLAQFTLIGK 326 (327)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998754
No 4
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=100.00 E-value=2.1e-38 Score=308.97 Aligned_cols=313 Identities=42% Similarity=0.705 Sum_probs=265.8
Q ss_pred CCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcCh
Q psy12150 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI 110 (456)
Q Consensus 31 ~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~ 110 (456)
+..||.++|+|.+|++++|++..++.+.+++..++.++++|+||||+|||++++++++.+.+..+...++++|+++..+.
T Consensus 3 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 82 (319)
T 2chq_A 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI 82 (319)
T ss_dssp ---CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT
T ss_pred ccccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh
Confidence 45799999999999999999999999999999998888999999999999999999999876655667889999887666
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccCCceE
Q psy12150 111 QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190 (456)
Q Consensus 111 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~r~~~ 190 (456)
+.+++.+..+....... ..++++|||||+|.++.+.++.|++++++++..+++|++++...++.+++.+||..
T Consensus 83 ~~~~~~~~~~~~~~~~~-------~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 155 (319)
T 2chq_A 83 DVVRHKIKEFARTAPIG-------GAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (319)
T ss_dssp TTSSHHHHHHHHSCCSS-------SCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEE
T ss_pred HHHHHHHHHHHhcCCCC-------CCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeE
Confidence 66666665554222111 02567999999999999999999999999988999999999999999999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCCHHHHHH
Q psy12150 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEK 270 (456)
Q Consensus 191 i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~~~~~~i~~ 270 (456)
++|.+++.+++..++..+++++|+.+++++++.|++.++||+|.+++.+++++.+ ++.|+.++|.++++...+..+++
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~~~~~~~~~~~ 233 (319)
T 2chq_A 156 FRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITATARPEEMTE 233 (319)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHTTCCCHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998765 46799999999999998888888
Q ss_pred HHcccchHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhhcCCC
Q psy12150 271 LLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGE 350 (456)
Q Consensus 271 l~~~~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~ 350 (456)
++++ +.
T Consensus 234 l~~~-----------------------------~~--------------------------------------------- 239 (319)
T 2chq_A 234 LIQT-----------------------------AL--------------------------------------------- 239 (319)
T ss_dssp HHHH-----------------------------HH---------------------------------------------
T ss_pred HHHH-----------------------------HH---------------------------------------------
Confidence 8877 00
Q ss_pred CcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy12150 351 GIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 429 (456)
Q Consensus 351 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~s~~di~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 429 (456)
.+++..+...+..++. +|++..+++..+.+.+... .++...+.+++..++++|+
T Consensus 240 ------------------------~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~l-~~~~~~l~~~~~~l~~~~~ 294 (319)
T 2chq_A 240 ------------------------KGNFMEARELLDRLMVEYGMSGEDIVAQLFREIISM-PIKDSLKVQLIDKLGEVDF 294 (319)
T ss_dssp ------------------------HTCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTS-CSCTTHHHHHHHHHHHHHH
T ss_pred ------------------------hCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHH
Confidence 1222223334444544 7888888888888777754 5899999999999999999
Q ss_pred hhhcCCChhHHHHHHHHHHHHH
Q psy12150 430 RLQDGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 430 ~l~~g~~~~~ql~~l~~~~~~~ 451 (456)
+++.|+++.+++..++..++.+
T Consensus 295 ~lk~~~~~~~~le~l~~~l~~~ 316 (319)
T 2chq_A 295 RLTEGANERIQLDAYLAYLSTL 316 (319)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 5
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=2.7e-38 Score=313.25 Aligned_cols=323 Identities=28% Similarity=0.416 Sum_probs=247.4
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHH-hcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCcc----------------
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCL-SGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY---------------- 95 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l-~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~---------------- 95 (456)
+||++||+|++|++++|++.+++.+++++ ..++.++++|+||+|+|||++++++++.+.+...
T Consensus 2 ~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~ 81 (354)
T 1sxj_E 2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR 81 (354)
T ss_dssp --CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred CcchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc
Confidence 59999999999999999999999999999 8888888999999999999999999997654221
Q ss_pred --------ccceEEeeCCCCcChH--HHHHHHHHHHHhhccCCCC-CCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhc
Q psy12150 96 --------RERILELNASDDRGIQ--VIRDKVKTFAQQTASGFNQ-DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE 164 (456)
Q Consensus 96 --------~~~~~e~n~~~~~~~~--~i~~~l~~~~~~~~~~~~~-~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~ 164 (456)
...+++++.++..... .+++.+..+.......... ......+++++|+||++.|....++.|+++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 82 KLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp ----CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred cceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 0124555554422111 3444444443221110000 0000136679999999999999999999999999
Q ss_pred cCcceEEEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy12150 165 TKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCD-FKALETLVETSGGDMRRAITCLQSCA 243 (456)
Q Consensus 165 ~~~~~lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~-~~~l~~L~~~s~gdlr~~~~~L~~~~ 243 (456)
+..+.+|++++...++.+++++||..++|++++.+++..++..+++++|+.++ +++++.|++.++||+|.+++.+++++
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMA 241 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999 99999999999999999999999998
Q ss_pred HhhCCCCCCHHHHHHHhCCCCHHHHHHHHcccchHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12150 244 RLKGGEGIVNEDVLEVTGVIPKPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALE 323 (456)
Q Consensus 244 ~~~~~~~It~~~v~~~~~~~~~~~i~~l~~~~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~~~~~~~~~~~~~l~~~~~ 323 (456)
.+.+ +.||.+++ +.....++.+++++++ ++.. ..
T Consensus 242 ~~~~-~~i~~~~~--~~~~~~~~~~~~l~~~------------i~~~-~~------------------------------ 275 (354)
T 1sxj_E 242 LNNE-LALKSSSP--IIKPDWIIVIHKLTRK------------IVKE-RS------------------------------ 275 (354)
T ss_dssp HTTT-TEECSSCC--CCCCHHHHHHHHHHHH------------HHHC-CS------------------------------
T ss_pred HhCC-CCcCcCcC--CCCccHHHHHHHHHHH------------HHHh-cc------------------------------
Confidence 7642 35765543 1112223556666665 0000 00
Q ss_pred HHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy12150 324 TLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFH 403 (456)
Q Consensus 324 ~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~ 403 (456)
...+..+...+..++.+|++..+|+.+++
T Consensus 276 ---------------------------------------------------~~~~~~~~~~l~~l~~~g~~~~~i~~~l~ 304 (354)
T 1sxj_E 276 ---------------------------------------------------VNSLIECRAVLYDLLAHCIPANIILKELT 304 (354)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred ---------------------------------------------------hhHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 01122223345567779999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHHh
Q psy12150 404 DIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKAN 452 (456)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~~ 452 (456)
.++.+...+++..+.++++.++++|++|+.|+++.+||..+++.++.++
T Consensus 305 ~~~~~~~~~~~~~l~~~~~~l~~~d~~l~~g~~~~~~le~~~~~~~~~~ 353 (354)
T 1sxj_E 305 FSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCCL 353 (354)
T ss_dssp HTTTTCTTSCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 9888765699999999999999999999999999999999999998875
No 6
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=6.9e-37 Score=298.79 Aligned_cols=317 Identities=34% Similarity=0.569 Sum_probs=269.1
Q ss_pred CCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcCh
Q psy12150 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI 110 (456)
Q Consensus 31 ~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~ 110 (456)
...||.++|+|.+|++++|++..++.+.+++..++.++++|+||+|+|||++++.+++.+.+..+...++++++++..+.
T Consensus 7 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 86 (323)
T 1sxj_B 7 LQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGI 86 (323)
T ss_dssp CCCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSH
T ss_pred ccCcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccCh
Confidence 35799999999999999999999999999999998888999999999999999999999866555557889999887777
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccCCceE
Q psy12150 111 QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190 (456)
Q Consensus 111 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~r~~~ 190 (456)
+.+++.+..+....... ..+++++|||||+|.++.+.++.|++++++++..+++|++++...++.+++.+||..
T Consensus 87 ~~i~~~~~~~~~~~~~~------~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~ 160 (323)
T 1sxj_B 87 DVVRNQIKHFAQKKLHL------PPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAI 160 (323)
T ss_dssp HHHHTHHHHHHHBCCCC------CTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHHHHHHHHHHhccccC------CCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceE
Confidence 77777766655321110 012467999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCCHHHHHH
Q psy12150 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEK 270 (456)
Q Consensus 191 i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~~~~~~i~~ 270 (456)
++|.+++.+++..++..+++++|..+++++++.+++.++||+|.+++.+++++... +.|+.++|.++++......+++
T Consensus 161 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~--~~i~~~~v~~~~~~~~~~~i~~ 238 (323)
T 1sxj_B 161 LRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGH--GLVNADNVFKIVDSPHPLIVKK 238 (323)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--SSBCHHHHHHHHTSCCHHHHHH
T ss_pred EeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCcCHHHHHHHHCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987543 5799999999999988888888
Q ss_pred HHcccchHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhhcCCC
Q psy12150 271 LLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGE 350 (456)
Q Consensus 271 l~~~~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~ 350 (456)
+++.++..+++.++..
T Consensus 239 ~~~~~~~~~~l~~l~~---------------------------------------------------------------- 254 (323)
T 1sxj_B 239 MLLASNLEDSIQILRT---------------------------------------------------------------- 254 (323)
T ss_dssp HHSCSSHHHHHHHHHH----------------------------------------------------------------
T ss_pred HHhcCCHHHHHHHHHH----------------------------------------------------------------
Confidence 8776433333322221
Q ss_pred CcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy12150 351 GIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 430 (456)
Q Consensus 351 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 430 (456)
.+..+|++..+++..+..++.+...++...+.+++..++++|++
T Consensus 255 ------------------------------------dl~~~g~~~~~i~~~l~~~~~~l~~~~~~~l~~~l~~l~~~~~~ 298 (323)
T 1sxj_B 255 ------------------------------------DLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMR 298 (323)
T ss_dssp ------------------------------------TTTTTTCCHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------HHHHcCCCHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 03336778888888888777765348999999999999999999
Q ss_pred hhcCCChhHHHHHHHHHHHHHhccc
Q psy12150 431 LQDGASEYIQILDLGSIVIKANKTA 455 (456)
Q Consensus 431 l~~g~~~~~ql~~l~~~~~~~~~~~ 455 (456)
++.|+++.+++..++..++++.++|
T Consensus 299 l~~~~~~~l~le~l~~~~~~~~~~~ 323 (323)
T 1sxj_B 299 ILEGVGTYLQLASMLAKIHKLNNKA 323 (323)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHTTC-
T ss_pred HHhccChHHHHHHHHHHHHhhccCC
Confidence 9999999999999999999887654
No 7
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=100.00 E-value=2.9e-37 Score=302.31 Aligned_cols=299 Identities=24% Similarity=0.326 Sum_probs=238.4
Q ss_pred CCCCCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCC
Q psy12150 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD 106 (456)
Q Consensus 28 ~~~~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~ 106 (456)
.+....||.++|+|++|++++|++..++.+.+++..+..++ ++++||||+|||++++++++.+. ..++++|+++
T Consensus 9 ~~~~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~ 83 (324)
T 3u61_B 9 VNEKEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSD 83 (324)
T ss_dssp CCTTCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTT
T ss_pred cCcccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEcccc
Confidence 44667899999999999999999999999999999998887 88889999999999999999873 3788999887
Q ss_pred CcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCcc-HHHHHHHHHHHHhccCcceEEEEecCccccccccc
Q psy12150 107 DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT-HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185 (456)
Q Consensus 107 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~-~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~ 185 (456)
.. .+.+++.+..+....... +++++|||||+|.++ .+.++.|++++++++..+++|+++|...++.+++.
T Consensus 84 ~~-~~~i~~~~~~~~~~~~~~--------~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~ 154 (324)
T 3u61_B 84 CK-IDFVRGPLTNFASAASFD--------GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQ 154 (324)
T ss_dssp CC-HHHHHTHHHHHHHBCCCS--------SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHH
T ss_pred cC-HHHHHHHHHHHHhhcccC--------CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHH
Confidence 44 667777676665442221 256799999999999 99999999999999889999999999999999999
Q ss_pred CCceEEEecCCCHHH-------HHHHHHHHHHHcCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHH
Q psy12150 186 SRCSKFRFKPLAENT-------MLTRLQYICEQESVMCDF-KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257 (456)
Q Consensus 186 ~r~~~i~f~~~~~~e-------l~~~l~~~~~~~~~~i~~-~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~ 257 (456)
+||..++|++|+.++ +..++...+..+++.+++ ++++.+++.++||+|.+++.|++++ .++.||.+++.
T Consensus 155 sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~---~~~~i~~~~v~ 231 (324)
T 3u61_B 155 SRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS---SKGVLDAGILS 231 (324)
T ss_dssp HHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG---GGTCBCC----
T ss_pred hhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh---ccCCCCHHHHH
Confidence 999999999999887 456677778889999998 9999999999999999999999987 34579999998
Q ss_pred HHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHH
Q psy12150 258 EVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVETSGGDMR 334 (456)
Q Consensus 258 ~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r 334 (456)
+++.. ++.++.+++. ++.+++..++.+++.
T Consensus 232 ~~~~~--~~~i~~~~~~~~~~~~~~a~~~~~~l~~--------------------------------------------- 264 (324)
T 3u61_B 232 LVTND--RGAIDDVLESLKNKDVKQLRALAPKYAA--------------------------------------------- 264 (324)
T ss_dssp ----------CHHHHHHHHTTCHHHHHHHHHHHSS---------------------------------------------
T ss_pred HHhCC--HHHHHHHHHHHHcCCHHHHHHHHHHhcc---------------------------------------------
Confidence 88765 3455555554 344444443333322
Q ss_pred HHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCH
Q psy12150 335 RAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSD 414 (456)
Q Consensus 335 ~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~~~~~~~~~~~ 414 (456)
+..+|+..|+..+.+ .++.
T Consensus 265 -----------------------------------------------------------~~~~i~~~l~~~~~~--~~~~ 283 (324)
T 3u61_B 265 -----------------------------------------------------------DYSWFVGKLAEEIYS--RVTP 283 (324)
T ss_dssp -----------------------------------------------------------CHHHHHHHHHHHHHH--HSCH
T ss_pred -----------------------------------------------------------CHHHHHHHHHHHHHH--hCCH
Confidence 455555556655554 5788
Q ss_pred HHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHH
Q psy12150 415 KQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 415 ~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~ 451 (456)
..+.+++..++++|++|+.|+++.+||..+++.++..
T Consensus 284 ~~l~~i~~~l~~~d~~l~~g~~~~~~le~~~~~~~~~ 320 (324)
T 3u61_B 284 QSIIRMYEIVGENNQYHGIAANTELHLAYLFIQLACE 320 (324)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999865
No 8
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=100.00 E-value=1.5e-34 Score=288.18 Aligned_cols=330 Identities=19% Similarity=0.256 Sum_probs=269.0
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccc--------------
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYR-------------- 96 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~-------------- 96 (456)
..||.++|+|.+|++++|++..++.+..++..++.++ ++|+||+|+|||++++++++.+.+....
T Consensus 3 ~~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 82 (373)
T ss_dssp CCCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHH
T ss_pred cHHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 4689999999999999999999999999999988877 8999999999999999999988653210
Q ss_pred -----cceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEE
Q psy12150 97 -----ERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (456)
Q Consensus 97 -----~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lI 171 (456)
..+++++.....+.+.+++.+..+...+.. +++++|||||+|.++.+.++.|++++++++..+++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~I 153 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR---------GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFL 153 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSS---------SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEE
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhcccc---------CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEE
Confidence 135666665544444555544443221111 256799999999999999999999999999999999
Q ss_pred EEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy12150 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (456)
Q Consensus 172 l~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~I 251 (456)
++++...++.+++.+||..++|.+++.+++..|+..+++++|+.+++++++.+++.++||+|.+.+.++++..+. ++.|
T Consensus 154 l~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~-~~~i 232 (373)
T 1jr3_A 154 LATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQV 232 (373)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHT-TTCB
T ss_pred EEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhc-CCcc
Confidence 999988899999999999999999999999999999999999999999999999999999999999999998765 4689
Q ss_pred CHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12150 252 VNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF----DQFHDIVMLASSLSDKQKALFKALET 324 (456)
Q Consensus 252 t~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~~~~~~~~~~~~~l~~~~~~ 324 (456)
|.++|.++++......+++++++ ++..++..+++++...|++|..++ ++||+++.....
T Consensus 233 ~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~l~~l~~~~r~l~~~~~~-------------- 298 (373)
T 1jr3_A 233 STQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS-------------- 298 (373)
T ss_dssp CHHHHHHHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTC--------------
T ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhhc--------------
Confidence 99999999999999999999998 889999999999999999998755 666666611100
Q ss_pred HHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy12150 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHD 404 (456)
Q Consensus 325 ~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~ 404 (456)
+.. . .++ -.+....+.+
T Consensus 299 -----------------------~~~-------------------------~--------------~~~-~~~~~~~~~~ 315 (373)
T 1jr3_A 299 -----------------------PAA-------------------------L--------------GND-MAAIELRMRE 315 (373)
T ss_dssp -----------------------TTC-------------------------C--------------CSG-GGGTHHHHHH
T ss_pred -----------------------Ccc-------------------------c--------------ccc-chhHHHHHHH
Confidence 000 0 000 0112233333
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHhhhhcCCChhHHHHHHHHHHHHH
Q psy12150 405 IVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ql~~l~~~~~~~ 451 (456)
... .++.....+++..+.++|.+++.+.+..+.+..++..++..
T Consensus 316 ~a~---~~~~~~l~~~~~~l~~~~~~lk~~~~~~l~le~~ll~~~~~ 359 (373)
T 1jr3_A 316 LAR---TIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 (373)
T ss_dssp HHH---HSCHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHT
T ss_pred HHH---hCCHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhc
Confidence 333 47888899999999999999999999999999999888765
No 9
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=4.9e-33 Score=268.51 Aligned_cols=281 Identities=12% Similarity=0.085 Sum_probs=213.9
Q ss_pred ccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhc-CCccccceEEeeCCC-CcChHHHHHHHHHHHHhhcc
Q psy12150 49 EQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF-GDMYRERILELNASD-DRGIQVIRDKVKTFAQQTAS 126 (456)
Q Consensus 49 g~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~-~~~~~~~~~e~n~~~-~~~~~~i~~~l~~~~~~~~~ 126 (456)
||+++++.|++.++.++.++|+||||||+|||++++++++.+. ......++.++++++ ..+.+.+++.+..+...+..
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~ 80 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPEL 80 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSS
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhcccc
Confidence 7889999999999999855699999999999999999998642 111133788888875 57888888877666544332
Q ss_pred CCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccCCceEEEecCCCHHHHHHHHH
Q psy12150 127 GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206 (456)
Q Consensus 127 ~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~ 206 (456)
++++|+||||+|.|+.+++++|+++||+|+++++||++|+++.++.++++|| .++|.+++.+++.+|+.
T Consensus 81 ---------~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~~~i~~~L~ 149 (305)
T 2gno_A 81 ---------YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVPKEFRDLVK 149 (305)
T ss_dssp ---------SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCHHHHHHHH
T ss_pred ---------CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeCCCCCHHHHHHHHH
Confidence 2688999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH-------hhCCCCCCHHHHHHHhCCCCHH--HHHHHHcc---
Q psy12150 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR-------LKGGEGIVNEDVLEVTGVIPKP--WIEKLLKV--- 274 (456)
Q Consensus 207 ~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~-------~~~~~~It~~~v~~~~~~~~~~--~i~~l~~~--- 274 (456)
.++ .++++++ ..+.||+|.+++.++.... +... .-+.++|..+++...++ ++|+++++
T Consensus 150 ~~~-----~i~~~~~----~~~~g~~~~al~~l~~~~~~~~~l~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~l~~ai~~ 219 (305)
T 2gno_A 150 EKI-----GDLWEEL----PLLERDFKTALEAYKLGAEKLSGLMESLKV-LETEKLLKKVLSKGLEGYLACRELLERFSK 219 (305)
T ss_dssp HHH-----TTHHHHC----GGGGTCHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHTTTTTCSHHHHHHHHHHHHHHHHH
T ss_pred HHh-----CCCHHHH----HHHCCCHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHccCCcchHHHHHHHHHHHC
Confidence 988 3667665 4568999999888853221 1110 11467777777776654 78888777
Q ss_pred cchHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCccc
Q psy12150 275 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 354 (456)
Q Consensus 275 ~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~ 354 (456)
++..+|++.+++|+..
T Consensus 220 ~~~~~a~~~~~~l~~~---------------------------------------------------------------- 235 (305)
T 2gno_A 220 VESKEFFALFDQVTNT---------------------------------------------------------------- 235 (305)
T ss_dssp SCGGGHHHHHHHHHHH----------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHh----------------------------------------------------------------
Confidence 5555555555554440
Q ss_pred ccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhhc-
Q psy12150 355 EDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQD- 433 (456)
Q Consensus 355 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~- 433 (456)
..|++..+++..+++.+.... +..+.++++.++++|++++.
T Consensus 236 -----------------------------------~~g~~~~~~i~~~~r~l~~~~---~~~~~~~l~~~~~~~~~~~~k 277 (305)
T 2gno_A 236 -----------------------------------ITGKDAFLLIQRLTRIILHEN---TWESVEDQKSVSFLDSILRVK 277 (305)
T ss_dssp -----------------------------------SCTHHHHHHHHHHHHHHHHTS---CCCSHHHHHHHHHHHHHHTCC
T ss_pred -----------------------------------hcCCCHHHHHHHHHHHHHhhc---hhhhHHHHHHHHHHHHHHHHh
Confidence 045555555555555555332 33457788899999999999
Q ss_pred --CCChhHHHHHHHHHHHHHh
Q psy12150 434 --GASEYIQILDLGSIVIKAN 452 (456)
Q Consensus 434 --g~~~~~ql~~l~~~~~~~~ 452 (456)
|+++.+||.+++++|+...
T Consensus 278 ~~g~~~~lql~~l~~~~~~~~ 298 (305)
T 2gno_A 278 IANLNNKLTLMNILAIHRERK 298 (305)
T ss_dssp GGGCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999764
No 10
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.97 E-value=6.7e-32 Score=266.29 Aligned_cols=308 Identities=11% Similarity=0.046 Sum_probs=237.9
Q ss_pred HHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCcc-ccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCC
Q psy12150 56 VLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY-RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133 (456)
Q Consensus 56 ~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~-~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 133 (456)
++.+.++ ++.++ |+||||+|+||+++++.+++.+.+..+ ...+++++.. .++++.+..+...+.++
T Consensus 8 ~l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~plf~------ 75 (343)
T 1jr3_D 8 QLRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-----TDWNAIFSLCQAMSLFA------ 75 (343)
T ss_dssp THHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT-----CCHHHHHHHHHHHHHCC------
T ss_pred HHHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC-----CCHHHHHHHhcCcCCcc------
Confidence 3555666 45555 999999999999999999998754322 2234455431 23444444544444443
Q ss_pred CCCCcEEEEEcCCCC-ccHHHHHHHHHHHHhccCcceEEEEecC------cccccccccCCceEEEecCCCHHHHHHHHH
Q psy12150 134 PCPPFKIVILDEADS-MTHAAQAALRRTMEKETKSTRFCLICNY------VSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206 (456)
Q Consensus 134 ~~~~~~iviIDE~d~-l~~~~~~~Ll~~le~~~~~~~lIl~~~~------~~kl~~~l~~r~~~i~f~~~~~~el~~~l~ 206 (456)
++++|+|||++. ++.+.++.|++++++|++++++|++++. ..++.+++.+||..++|.+++.+++..|++
T Consensus 76 ---~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 76 ---SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp ---SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred ---CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 788999999999 9999999999999999999999999875 356889999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCCHHHHHHHHcc---cchHHHHHH
Q psy12150 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKY 283 (456)
Q Consensus 207 ~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~~~~~~i~~l~~~---~~~~~a~~~ 283 (456)
.+++++|+.+++++++.|++.++||+|.+.++|++++.|.+++.||.++|.++++...+.++|+++++ ++..+++.+
T Consensus 153 ~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~if~l~~ai~~~d~~~al~~ 232 (343)
T 1jr3_D 153 ARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 (343)
T ss_dssp HHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCCHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999876678999999999998888899999999 999999999
Q ss_pred HHHHHHhccCHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchh
Q psy12150 284 IEDLILEAYSATQLF----DQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 359 (456)
Q Consensus 284 ~~~l~~~~~~~~~i~----~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~ 359 (456)
+++++..|++|..++ ++||+++.......
T Consensus 233 l~~l~~~g~~~~~il~~l~~~~r~l~~~~~~~~----------------------------------------------- 265 (343)
T 1jr3_D 233 LQQLRLEGSEPVILLRTLQRELLLLVNLKRQSA----------------------------------------------- 265 (343)
T ss_dssp HTSSTTTTCCHHHHHHHHHHHHHHHHHHHTCSS-----------------------------------------------
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHh-----------------------------------------------
Confidence 999999999999876 66777762111000
Q ss_pred cccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhhcCC--Ch
Q psy12150 360 VTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA--SE 437 (456)
Q Consensus 360 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~--~~ 437 (456)
.++... ..+.+ |... +.+..+.+... .++.....+++..++++|.+++.|. +.
T Consensus 266 ---------------~g~~~~---i~~~l---~i~~-~~~~~~~~~~~---~~s~~~L~~~l~~l~~~d~~lK~~~~~~~ 320 (343)
T 1jr3_D 266 ---------------HTPLRA---LFDKH---RVWQ-NRRGMMGEALN---RLSQTQLRQAVQLLTRTELTLKQDYGQSV 320 (343)
T ss_dssp ---------------SSCHHH---HHHHH---TCCS-SHHHHHHHHHH---HSCHHHHHHHHHHHHHHHHHHHHSSCSCH
T ss_pred ---------------CCCHHH---HHHHc---CCCH-HHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 000000 01111 2111 11222233333 5789999999999999999999985 45
Q ss_pred hHHHHHHHHHHHH
Q psy12150 438 YIQILDLGSIVIK 450 (456)
Q Consensus 438 ~~ql~~l~~~~~~ 450 (456)
.+.+..++..++.
T Consensus 321 ~~~le~l~l~l~~ 333 (343)
T 1jr3_D 321 WAELEGLSLLLCH 333 (343)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcC
Confidence 6888888877653
No 11
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.97 E-value=1.1e-29 Score=257.51 Aligned_cols=256 Identities=20% Similarity=0.293 Sum_probs=210.1
Q ss_pred CcchhccCCCCcccccccHHHH---HHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcC
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVV---SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG 109 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~---~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~ 109 (456)
.||.++|||.+|++++|+++++ ..+...++.+..++++|+||||||||++++++++.+.. .++.+++.. .+
T Consensus 14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~-----~f~~l~a~~-~~ 87 (447)
T 3pvs_A 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA-----DVERISAVT-SG 87 (447)
T ss_dssp CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC-----EEEEEETTT-CC
T ss_pred CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC-----CeEEEEecc-CC
Confidence 6999999999999999999999 88999999999888999999999999999999998743 577777765 55
Q ss_pred hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEec--CcccccccccCC
Q psy12150 110 IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN--YVSCIIQPLTSR 187 (456)
Q Consensus 110 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~--~~~kl~~~l~~r 187 (456)
...+++.+.......... .+.+|||||+|.++...++.|++++++. .+++|++++ ....+.++|.+|
T Consensus 88 ~~~ir~~~~~a~~~~~~~---------~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~sR 156 (447)
T 3pvs_A 88 VKEIREAIERARQNRNAG---------RRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALLSR 156 (447)
T ss_dssp HHHHHHHHHHHHHHHHTT---------CCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHHTT
T ss_pred HHHHHHHHHHHHHhhhcC---------CCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHhCc
Confidence 666776666554443322 4569999999999999999999999974 456666663 446788999999
Q ss_pred ceEEEecCCCHHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhC-C----CCCCHHH
Q psy12150 188 CSKFRFKPLAENTMLTRLQYICEQ-------ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG-G----EGIVNED 255 (456)
Q Consensus 188 ~~~i~f~~~~~~el~~~l~~~~~~-------~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~-~----~~It~~~ 255 (456)
|.++.|.+++.+++..++...+.+ .++.+++++++.|++.++||+|.+++.|+.++.++. . ..||.++
T Consensus 157 ~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~ 236 (447)
T 3pvs_A 157 ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPEL 236 (447)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHH
T ss_pred eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHH
Confidence 999999999999999999999987 567799999999999999999999999999998874 1 4799999
Q ss_pred HHHHhCCCCH----------HHHHHHHcc---cchHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy12150 256 VLEVTGVIPK----------PWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305 (456)
Q Consensus 256 v~~~~~~~~~----------~~i~~l~~~---~~~~~a~~~~~~l~~~~~~~~~i~~q~~~l~ 305 (456)
|.+++..... +.+..+.+. ++.+.|+.++..|+..|++|..|.|++-.+.
T Consensus 237 v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a 299 (447)
T 3pvs_A 237 LTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIA 299 (447)
T ss_dssp HHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999987641 344444444 7889999999999999999999998775544
No 12
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.96 E-value=2.7e-28 Score=224.13 Aligned_cols=223 Identities=51% Similarity=0.849 Sum_probs=194.4
Q ss_pred CCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcCh
Q psy12150 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI 110 (456)
Q Consensus 31 ~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~ 110 (456)
...||.++|+|.+|++++|++..++.+..++..+..++++|+||+|+|||++++.+++.+....+...++.+++....+.
T Consensus 3 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T 2chg_A 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI 82 (226)
T ss_dssp -CCCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCH
T ss_pred chhhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccCh
Confidence 45799999999999999999999999999999888778999999999999999999998866555667889998887777
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccccCCceE
Q psy12150 111 QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190 (456)
Q Consensus 111 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l~~r~~~ 190 (456)
..+...+..+....... .....+|||||++.+....++.|+++++++...+++|++++....+.+++.+|+..
T Consensus 83 ~~~~~~~~~~~~~~~~~-------~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~ 155 (226)
T 2chg_A 83 DVVRHKIKEFARTAPIG-------GAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (226)
T ss_dssp HHHHHHHHHHHTSCCST-------TCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHHHHHHHHHhcccCCC-------ccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCce
Confidence 66666665554321110 12456999999999999999999999999888889999999888899999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCC
Q psy12150 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262 (456)
Q Consensus 191 i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~ 262 (456)
++|.+++.+++..++...+...+..+++++++.+++.++||+|.+++.+++++.++ +.|+.++|+++++.
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~~ 225 (226)
T 2chg_A 156 FRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITAT 225 (226)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHHT
T ss_pred eecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999998765 68999999988753
No 13
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.96 E-value=2.1e-28 Score=240.13 Aligned_cols=289 Identities=18% Similarity=0.182 Sum_probs=211.3
Q ss_pred cccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccc-------------------cceEEeeCC--
Q psy12150 48 IEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYR-------------------ERILELNAS-- 105 (456)
Q Consensus 48 vg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~-------------------~~~~e~n~~-- 105 (456)
..+++..+.+.+.+++++.+| |||+||||+|||++++++++.+.+.... .++.+++..
T Consensus 5 pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~ 84 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG 84 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT
T ss_pred CchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc
Confidence 356777889999999999988 9999999999999999999998764311 356677764
Q ss_pred -CCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccccc
Q psy12150 106 -DDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPL 184 (456)
Q Consensus 106 -~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~l 184 (456)
...+.+.+++.+..+...+.. ++++|+||||+|.|+.+.++.|++++|+|+.+++||++++++.++.+++
T Consensus 85 ~~~~~i~~ir~l~~~~~~~~~~---------~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti 155 (334)
T 1a5t_A 85 KNTLGVDAVREVTEKLNEHARL---------GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATL 155 (334)
T ss_dssp CSSBCHHHHHHHHHHTTSCCTT---------SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHH
T ss_pred CCCCCHHHHHHHHHHHhhcccc---------CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 446677777665554332221 2678999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCC
Q psy12150 185 TSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP 264 (456)
Q Consensus 185 ~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~~~ 264 (456)
++||..++|.+++.+++.+||..++ .+++++++.+++.++||+|.+++.+++.... ...++.+.+..+..
T Consensus 156 ~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~~~--~~~~~~~~~~~~~~--- 225 (334)
T 1a5t_A 156 RSRCRLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDNWQ--ARETLCQALAYSVP--- 225 (334)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHHHH--HHHHHHHHHHHHHH---
T ss_pred hhcceeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccchHH--HHHHHHHHHHHHHh---
Confidence 9999999999999999999998775 6899999999999999999999999875421 11223333333222
Q ss_pred HHHHHHHHcccchHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcchHHHHHHHHHH
Q psy12150 265 KPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLF----DQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCL 340 (456)
Q Consensus 265 ~~~i~~l~~~~~~~~a~~~~~~l~~~~~~~~~i~----~q~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~gd~r~~~~~l 340 (456)
..+.. .++..+ .++++..++ ++||+++
T Consensus 226 ---------~~~~~---~~~~~l--~~~~~~~~l~~l~~~~rdll----------------------------------- 256 (334)
T 1a5t_A 226 ---------SGDWY---SLLAAL--NHEQAPARLHWLATLLMDAL----------------------------------- 256 (334)
T ss_dssp ---------HCCCG---GGHHHH--CSTTHHHHHHHHHHHHHHHT-----------------------------------
T ss_pred ---------ChHHH---HHHHHH--hcccHHHHHHHHHHHHHHHH-----------------------------------
Confidence 11100 111111 123333322 3334433
Q ss_pred hhhhhhcCCCCcccccchhcccCCCchHHHHHhhhCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q psy12150 341 QSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI 420 (456)
Q Consensus 341 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~s~~di~~~l~~~~~~~~~~~~~~~~~~ 420 (456)
. ++. ..+|+...|.+..+..... .++...+.++
T Consensus 257 ---------------------------------~----------~~~-~~~~~~~~~~~~~~~~~a~---~~~~~~l~~~ 289 (334)
T 1a5t_A 257 ---------------------------------K----------RHH-GAAQVTNVDVPGLVAELAN---HLSPSRLQAI 289 (334)
T ss_dssp ---------------------------------C----------C-------CCCTTCHHHHHHHHH---HSCHHHHHHH
T ss_pred ---------------------------------H----------hcc-CCccccCHHHHHHHHHHHH---hCCHHHHHHH
Confidence 0 000 0112333444555555554 4788999999
Q ss_pred HHHHHHHHhhhh--cCCChhHHHHHHHHHHHHH
Q psy12150 421 LEKLAECNARLQ--DGASEYIQILDLGSIVIKA 451 (456)
Q Consensus 421 ~~~l~~~~~~l~--~g~~~~~ql~~l~~~~~~~ 451 (456)
++.+.+++++++ .+.+..+++..++..+.+.
T Consensus 290 ~~~l~~~~~~l~~~~~~n~~l~le~ll~~l~~~ 322 (334)
T 1a5t_A 290 LGDVCHIREQLMSVTGINRELLITDLLLRIEHY 322 (334)
T ss_dssp HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 999999999999 8999999999999999864
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.95 E-value=3e-26 Score=213.22 Aligned_cols=221 Identities=24% Similarity=0.359 Sum_probs=179.6
Q ss_pred CCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccc-------------
Q psy12150 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYR------------- 96 (456)
Q Consensus 31 ~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~------------- 96 (456)
...||.++|+|.++++++|++..++.+..++..+..++ ++|+||+|+|||++++.+++.+......
T Consensus 9 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (250)
T 1njg_A 9 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 88 (250)
T ss_dssp --CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHH
T ss_pred HHHHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 45799999999999999999999999999999887666 9999999999999999999987542210
Q ss_pred ------cceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceE
Q psy12150 97 ------ERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRF 170 (456)
Q Consensus 97 ------~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~l 170 (456)
..++.++.........+...+..+ ... .. ...+.+|||||++.+....++.|++++++++..+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~----~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~ 159 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVEDTRDLLDNV----QYA-PA----RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF 159 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHHHHHHHHHSC----CCS-CS----SSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEE
T ss_pred HhccCCcceEEecCcccccHHHHHHHHHHh----hhc-hh----cCCceEEEEECcccccHHHHHHHHHHHhcCCCceEE
Confidence 123445544333333333322211 100 00 124569999999999999999999999988888899
Q ss_pred EEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCC
Q psy12150 171 CLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG 250 (456)
Q Consensus 171 Il~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~ 250 (456)
|++++....+.+.+.+|+..++|++++.+++.+++..++.+.+..+++++++.+++.++|++|.+.+.+++++.++ .+.
T Consensus 160 i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~-~~~ 238 (250)
T 1njg_A 160 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQ 238 (250)
T ss_dssp EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTT-TSS
T ss_pred EEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcc-Cce
Confidence 9999988888889999999999999999999999999999999999999999999999999999999999988764 458
Q ss_pred CCHHHHHHHhC
Q psy12150 251 IVNEDVLEVTG 261 (456)
Q Consensus 251 It~~~v~~~~~ 261 (456)
||.++|+++++
T Consensus 239 i~~~~v~~~~~ 249 (250)
T 1njg_A 239 VSTQAVSAMLG 249 (250)
T ss_dssp BCHHHHHHHSC
T ss_pred ecHHHHHHHhC
Confidence 99999998875
No 15
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.93 E-value=2.7e-25 Score=230.43 Aligned_cols=240 Identities=26% Similarity=0.385 Sum_probs=176.5
Q ss_pred CCCCCCCCcchhccCCCCcccccccHHHHHHHHHHHhcC-----------------CCCeEEEECCCCCcHHHHHHHHHH
Q psy12150 26 GKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGA-----------------DLPHFLFYGPPGTGKTSTMIAACH 88 (456)
Q Consensus 26 ~~~~~~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~-----------------~~~~~Ll~G~~G~GKT~~a~~l~~ 88 (456)
......+.+|+++|+|.+|++++|++..++.+..++... ..++++|+||||+|||++++++++
T Consensus 20 ~~~~~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 20 GPHMASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp ------CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 333556789999999999999999999999999998751 234599999999999999999999
Q ss_pred HhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhcc-C-CCCC---CCCCCCcEEEEEcCCCCccHHHH---HHHHHH
Q psy12150 89 QLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTAS-G-FNQD---GKPCPPFKIVILDEADSMTHAAQ---AALRRT 160 (456)
Q Consensus 89 ~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~-~-~~~~---~~~~~~~~iviIDE~d~l~~~~~---~~Ll~~ 160 (456)
.++ ..++++++++......+...+......... . .... ......+.+|||||+|.+....+ ..|+++
T Consensus 100 ~l~-----~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~ 174 (516)
T 1sxj_A 100 ELG-----YDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQF 174 (516)
T ss_dssp HTT-----CEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHH
T ss_pred HcC-----CCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHH
Confidence 973 378899999877665444333222111000 0 0000 00112556999999999976543 778888
Q ss_pred HHhccCcceEEEEecCcc-cccccccCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q psy12150 161 MEKETKSTRFCLICNYVS-CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239 (456)
Q Consensus 161 le~~~~~~~lIl~~~~~~-kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L 239 (456)
++... ..+|++++... ...+++.+||..+.|.+++.+++.+++..++.++++.+++++++.|++.++||+|.+++.|
T Consensus 175 l~~~~--~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 175 CRKTS--TPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp HHHCS--SCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHH
T ss_pred HHhcC--CCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 87643 34555666532 4456789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHhC---CCCHHHHHHHHcc
Q psy12150 240 QSCARLKGGEGIVNEDVLEVTG---VIPKPWIEKLLKV 274 (456)
Q Consensus 240 ~~~~~~~~~~~It~~~v~~~~~---~~~~~~i~~l~~~ 274 (456)
+.++. +++.|+.+++.+++. ......+|++++.
T Consensus 253 ~~~~~--~~~~It~~~v~~~~~~~~~~~~~~~f~~~~~ 288 (516)
T 1sxj_A 253 STIST--TTKTINHENINEISKAWEKNIALKPFDIAHK 288 (516)
T ss_dssp THHHH--HSSCCCTTHHHHHHHHHHTTTTSHHHHHHHH
T ss_pred HHHHh--cCCCCchHHHHHHHHhhccCCCCCHHHHHHH
Confidence 98765 456899999887765 3333344544443
No 16
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.91 E-value=1.8e-23 Score=205.38 Aligned_cols=212 Identities=20% Similarity=0.221 Sum_probs=168.1
Q ss_pred CCCCCcchhccCCCCcccccccHHHHHHHHHHHhc-----CCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEee
Q psy12150 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG-----ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELN 103 (456)
Q Consensus 29 ~~~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~-----~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n 103 (456)
......|.++|+|.+|++++|++..++.+..++.. ...++++|+||||||||++++++++.+.. .++.++
T Consensus 13 ~~~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~-----~~~~~~ 87 (338)
T 3pfi_A 13 YSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSA-----NIKTTA 87 (338)
T ss_dssp ----------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTC-----CEEEEE
T ss_pred cchhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEec
Confidence 35667999999999999999999999999888864 33445999999999999999999998643 577788
Q ss_pred CCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccC-----------------
Q psy12150 104 ASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETK----------------- 166 (456)
Q Consensus 104 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~----------------- 166 (456)
+........+...+... ....+|||||++.+..+.++.|++.+++...
T Consensus 88 ~~~~~~~~~~~~~~~~~---------------~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3pfi_A 88 APMIEKSGDLAAILTNL---------------SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL 152 (338)
T ss_dssp GGGCCSHHHHHHHHHTC---------------CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCC
T ss_pred chhccchhHHHHHHHhc---------------cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCC
Confidence 77655554444333220 1334999999999999999999999987531
Q ss_pred -cceEEEEecCcccccccccCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy12150 167 -STRFCLICNYVSCIIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244 (456)
Q Consensus 167 -~~~lIl~~~~~~kl~~~l~~r~-~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~ 244 (456)
.+++|.++|....+.+++.+|+ ..++|++++.+++..++...+...+..+++++++.|+..++|++|.+.+.++.+..
T Consensus 153 ~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 153 PKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRD 232 (338)
T ss_dssp CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2678888888888899999999 69999999999999999999999999999999999999999999999999998765
Q ss_pred hh---CCCCCCHHHHHHHh
Q psy12150 245 LK---GGEGIVNEDVLEVT 260 (456)
Q Consensus 245 ~~---~~~~It~~~v~~~~ 260 (456)
++ +++.|+.+++..++
T Consensus 233 ~a~~~~~~~i~~~~~~~~~ 251 (338)
T 3pfi_A 233 FADVNDEEIITEKRANEAL 251 (338)
T ss_dssp HHHHTTCSEECHHHHHHHH
T ss_pred HHHhhcCCccCHHHHHHHH
Confidence 54 45679999887665
No 17
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.90 E-value=2.4e-22 Score=199.56 Aligned_cols=225 Identities=17% Similarity=0.225 Sum_probs=170.5
Q ss_pred CCCCcchhccCCCC-cccccccHHHHHH---HHHHHhcCCCC--eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEee
Q psy12150 30 NKPVPWVEKYRPKT-IDDVIEQQEVVSV---LKKCLSGADLP--HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELN 103 (456)
Q Consensus 30 ~~~~~w~eky~P~~-~~~ivg~~~~~~~---l~~~l~~~~~~--~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n 103 (456)
....++.++++|.. |++++|++..+.. +...+..+..+ +++|+||||+|||++++++++.+... ..++.++
T Consensus 28 ~~~l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~---~~~~~~~ 104 (368)
T 3uk6_A 28 IRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD---TPFTAIA 104 (368)
T ss_dssp CCSCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS---CCEEEEE
T ss_pred hhccCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc---CCccccc
Confidence 44578889999998 9999999998765 56666777665 59999999999999999999998642 1333333
Q ss_pred CCC--------------------------------------------------CcC-----hHHHHHHHHHHHHhhccCC
Q psy12150 104 ASD--------------------------------------------------DRG-----IQVIRDKVKTFAQQTASGF 128 (456)
Q Consensus 104 ~~~--------------------------------------------------~~~-----~~~i~~~l~~~~~~~~~~~ 128 (456)
+.. ..+ ...+++.+..+........
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g 184 (368)
T 3uk6_A 105 GSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEG 184 (368)
T ss_dssp GGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhc
Confidence 221 001 2233333333322111110
Q ss_pred CCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEec------------CcccccccccCCceEEEecCC
Q psy12150 129 NQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN------------YVSCIIQPLTSRCSKFRFKPL 196 (456)
Q Consensus 129 ~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~------------~~~kl~~~l~~r~~~i~f~~~ 196 (456)
.... ...+|||||+|.+..+.++.|++.++++...+ ++++++ .+..+.+++.+||..+.|+++
T Consensus 185 ~~~~----~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~ 259 (368)
T 3uk6_A 185 KAEI----IPGVLFIDEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPY 259 (368)
T ss_dssp C-------CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCC
T ss_pred cccc----cCceEEEhhccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCC
Confidence 0000 12399999999999999999999999876654 444444 245677899999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhCC
Q psy12150 197 AENTMLTRLQYICEQESVMCDFKALETLVETSG-GDMRRAITCLQSCARLK---GGEGIVNEDVLEVTGV 262 (456)
Q Consensus 197 ~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~-gdlr~~~~~L~~~~~~~---~~~~It~~~v~~~~~~ 262 (456)
+.+++..+++.++..++..+++++++.|++.+. ||+|.+++.|+.++.++ +...||.++|.+++..
T Consensus 260 ~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 260 SEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999998 99999999999987776 5678999999988764
No 18
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.89 E-value=6.7e-22 Score=192.87 Aligned_cols=207 Identities=22% Similarity=0.229 Sum_probs=167.4
Q ss_pred chhccCCCCcccccccHHHHHHHHHHHhc-----CCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcC
Q psy12150 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSG-----ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG 109 (456)
Q Consensus 35 w~eky~P~~~~~ivg~~~~~~~l~~~l~~-----~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~ 109 (456)
|-++|+|.+|++++|++..+..+..++.. ....+++|+||+|||||++++++++.+.. .++.+++.....
T Consensus 2 ~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~ 76 (324)
T 1hqc_A 2 EDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEK 76 (324)
T ss_dssp ---CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCS
T ss_pred CccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCC
Confidence 56899999999999999999888888752 23345999999999999999999998743 566777776555
Q ss_pred hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc------------------CcceEE
Q psy12150 110 IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET------------------KSTRFC 171 (456)
Q Consensus 110 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~------------------~~~~lI 171 (456)
...+...+.. . . ....+|||||++.+....++.|++.+++.. ..+++|
T Consensus 77 ~~~l~~~l~~----~---~-------~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 77 PGDLAAILAN----S---L-------EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp HHHHHHHHTT----T---C-------CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred hHHHHHHHHH----h---c-------cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 4443332211 0 0 133499999999999999999999998753 346788
Q ss_pred EEecCcccccccccCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh---C
Q psy12150 172 LICNYVSCIIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK---G 247 (456)
Q Consensus 172 l~~~~~~kl~~~l~~r~-~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~---~ 247 (456)
++++....+.+++.+|+ ..+.|.+++.+++..++...+...+..+++++++.|+..++|++|.+.+.++.+..++ +
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~ 222 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAG 222 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTS
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhc
Confidence 88888888889999999 5999999999999999999999989999999999999999999999999999887665 3
Q ss_pred CCCCCHHHHHHHh
Q psy12150 248 GEGIVNEDVLEVT 260 (456)
Q Consensus 248 ~~~It~~~v~~~~ 260 (456)
.+.|+.+++..+.
T Consensus 223 ~~~i~~~~~~~~~ 235 (324)
T 1hqc_A 223 EEVITRERALEAL 235 (324)
T ss_dssp CSCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 5679998887654
No 19
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.87 E-value=1.5e-21 Score=181.66 Aligned_cols=213 Identities=15% Similarity=0.222 Sum_probs=164.6
Q ss_pred CCCCcchhccCC-CCcccccc---cHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCC
Q psy12150 30 NKPVPWVEKYRP-KTIDDVIE---QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (456)
Q Consensus 30 ~~~~~w~eky~P-~~~~~ivg---~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~ 105 (456)
....||..+++| .+|+++++ ++..++.+..++..+...+++|+||||+|||++++++++.+..... .+..+++.
T Consensus 12 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~--~~~~~~~~ 89 (242)
T 3bos_A 12 PLQLSLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELER--RSFYIPLG 89 (242)
T ss_dssp -CCCEEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEEEGG
T ss_pred hhhcCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC--eEEEEEHH
Confidence 446799999999 79999997 3577888999888766667999999999999999999998765432 45666665
Q ss_pred CCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHH--HHHHHHHHHhccC--cceEEEEecCcc---
Q psy12150 106 DDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA--QAALRRTMEKETK--STRFCLICNYVS--- 178 (456)
Q Consensus 106 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~--~~~Ll~~le~~~~--~~~lIl~~~~~~--- 178 (456)
+.... +.+.+..+ ....+|||||++.+.... ++.|+.+++.... ...+|++++...
T Consensus 90 ~~~~~--~~~~~~~~---------------~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 90 IHASI--STALLEGL---------------EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp GGGGS--CGGGGTTG---------------GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred HHHHH--HHHHHHhc---------------cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 42110 00000000 123499999999997655 7778877765432 224666776433
Q ss_pred -cccccccCCc---eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCC
Q psy12150 179 -CIIQPLTSRC---SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIV 252 (456)
Q Consensus 179 -kl~~~l~~r~---~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~--~~~~It 252 (456)
...+.+.+|+ ..++|.+++.+++.+++...++..+..+++++++.+++.++||+|.+.+.+++++.++ .++.||
T Consensus 153 ~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~~It 232 (242)
T 3bos_A 153 GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRKLT 232 (242)
T ss_dssp TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCCCc
Confidence 3457888998 7999999999999999999999999999999999999999999999999999998876 467899
Q ss_pred HHHHHHHhC
Q psy12150 253 NEDVLEVTG 261 (456)
Q Consensus 253 ~~~v~~~~~ 261 (456)
.+++++++.
T Consensus 233 ~~~v~~~l~ 241 (242)
T 3bos_A 233 IPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999998875
No 20
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.87 E-value=9e-21 Score=193.55 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=112.5
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEe---------cC----cccccccccCCceEEEecCCCHHHHHHHH
Q psy12150 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC---------NY----VSCIIQPLTSRCSKFRFKPLAENTMLTRL 205 (456)
Q Consensus 139 ~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~---------~~----~~kl~~~l~~r~~~i~f~~~~~~el~~~l 205 (456)
+|+||||++.|+.++++.|++.+|+++.. +||+++ .. +.++.+++++||..++|.+++.+++.+||
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 59999999999999999999999999887 677777 33 66788889999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhCCCC
Q psy12150 206 QYICEQESVMCDFKALETLVETS-GGDMRRAITCLQSCARLK---GGEGIVNEDVLEVTGVIP 264 (456)
Q Consensus 206 ~~~~~~~~~~i~~~~l~~L~~~s-~gdlr~~~~~L~~~~~~~---~~~~It~~~v~~~~~~~~ 264 (456)
+.++..++..++++++..++..+ +|++|.+++.++.+..++ +.+.|+.++|.+++....
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 376 KIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFY 438 (456)
T ss_dssp HHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhc
Confidence 99999999999999999999999 999999999999986655 567899999999876553
No 21
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.86 E-value=4e-20 Score=181.20 Aligned_cols=209 Identities=21% Similarity=0.211 Sum_probs=161.4
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHhcC-----CCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGA-----DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~-----~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~ 107 (456)
.+|.++++|++|++++|++.+++.+...+..+ .+.+++|+||||+||||++++++..++. .+...++...
T Consensus 13 ~~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~-----~~~~~sg~~~ 87 (334)
T 1in4_A 13 DSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT-----NIHVTSGPVL 87 (334)
T ss_dssp ----CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC-----CEEEEETTTC
T ss_pred HHHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEechHh
Confidence 36799999999999999999998888877643 3355999999999999999999998854 2333344333
Q ss_pred cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc------------------Ccce
Q psy12150 108 RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET------------------KSTR 169 (456)
Q Consensus 108 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~------------------~~~~ 169 (456)
....++..... . . ..+++++|||++.+.+..++.|+..++... +.+.
T Consensus 88 ~~~~~l~~~~~----~--~---------~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 88 VKQGDMAAILT----S--L---------ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp CSHHHHHHHHH----H--C---------CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred cCHHHHHHHHH----H--c---------cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 33333322211 1 0 123499999999999877888877776532 1245
Q ss_pred EEEEecCcccccccccCCce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--
Q psy12150 170 FCLICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK-- 246 (456)
Q Consensus 170 lIl~~~~~~kl~~~l~~r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~-- 246 (456)
++.+++.+..+.+++++|+. .+.|.+++.+++.++++..++..++.++++++..|+..++|++|.+.+.|+.+..++
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~ 232 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTV 232 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 66667778888899999996 689999999999999999999899999999999999999999999999999886665
Q ss_pred -CCCCCCHHHHHHHhC
Q psy12150 247 -GGEGIVNEDVLEVTG 261 (456)
Q Consensus 247 -~~~~It~~~v~~~~~ 261 (456)
+.+.||.+++++++.
T Consensus 233 ~~~~~It~~~v~~al~ 248 (334)
T 1in4_A 233 VKADRINTDIVLKTME 248 (334)
T ss_dssp HTCSSBCHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHH
Confidence 456899999988765
No 22
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.86 E-value=1.2e-19 Score=181.11 Aligned_cols=224 Identities=17% Similarity=0.210 Sum_probs=166.3
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhc----CCCC--eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCC
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG----ADLP--HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~----~~~~--~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~ 105 (456)
..+|..+|+| ++++|++..++.+..++.. .... +++|+||+|+|||++++.+++.+.... ...++++++.
T Consensus 7 ~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~ 82 (389)
T 1fnn_A 7 DSVFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGF 82 (389)
T ss_dssp GGGGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETT
T ss_pred HhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCc
Confidence 4578899999 6789999999888888764 3333 699999999999999999999885531 3367888877
Q ss_pred CCcChHHHHHHHHHHHHhhccCCCCCCCC--------------CCCcEEEEEcCCCCccHHHHHHHHHHHHhcc----Cc
Q psy12150 106 DDRGIQVIRDKVKTFAQQTASGFNQDGKP--------------CPPFKIVILDEADSMTHAAQAALRRTMEKET----KS 167 (456)
Q Consensus 106 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~--------------~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~----~~ 167 (456)
.......+...+....... ....+.. .....+|||||++.+....+..|.+++++.+ ..
T Consensus 83 ~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~ 159 (389)
T 1fnn_A 83 IYRNFTAIIGEIARSLNIP---FPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFR 159 (389)
T ss_dssp TCCSHHHHHHHHHHHTTCC---CCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCC
T ss_pred cCCCHHHHHHHHHHHhCcc---CCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCC
Confidence 6554333222211110000 0000000 0134599999999998888999999987644 36
Q ss_pred ceEEEEecCc---ccccccccCCce--EEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHc---------CCC
Q psy12150 168 TRFCLICNYV---SCIIQPLTSRCS--KFRFKPLAENTMLTRLQYICEQE--SVMCDFKALETLVETS---------GGD 231 (456)
Q Consensus 168 ~~lIl~~~~~---~kl~~~l~~r~~--~i~f~~~~~~el~~~l~~~~~~~--~~~i~~~~l~~L~~~s---------~gd 231 (456)
+.+|++++.. ..+.+.+.+|+. .++|+|++.+++.+++..++... ...+++++++.+++.+ +||
T Consensus 160 ~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~ 239 (389)
T 1fnn_A 160 IALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGD 239 (389)
T ss_dssp EEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCC
T ss_pred EEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCc
Confidence 7788888866 556677778876 79999999999999999998762 3478999999999999 899
Q ss_pred HHHHHHHHHHHHHhh---CCCCCCHHHHHHHhCC
Q psy12150 232 MRRAITCLQSCARLK---GGEGIVNEDVLEVTGV 262 (456)
Q Consensus 232 lr~~~~~L~~~~~~~---~~~~It~~~v~~~~~~ 262 (456)
+|.+++.++.+...+ +...|+.+++..+...
T Consensus 240 ~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~ 273 (389)
T 1fnn_A 240 ARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKE 273 (389)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence 999999999887765 4567999998876543
No 23
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.85 E-value=8.8e-20 Score=181.79 Aligned_cols=220 Identities=19% Similarity=0.223 Sum_probs=163.5
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHhc----CCCCeEEEECCCCCcHHHHHHHHHHHhcCC----ccccceEEeeC
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG----ADLPHFLFYGPPGTGKTSTMIAACHQLFGD----MYRERILELNA 104 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~----~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~----~~~~~~~e~n~ 104 (456)
.+|..+|.| ++++|++..++.+..++.. +...+++|+||||+|||++++.+++.+... .....++.+|+
T Consensus 10 ~~l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 10 WVLLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp HHHSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred HhcCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 567778888 6789999999999998854 344459999999999999999999987431 11346888888
Q ss_pred CCCcChHHHHHHHH-------------------HHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH--HHHHHHHHHHh
Q psy12150 105 SDDRGIQVIRDKVK-------------------TFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--AQAALRRTMEK 163 (456)
Q Consensus 105 ~~~~~~~~i~~~l~-------------------~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~--~~~~Ll~~le~ 163 (456)
........+...+. .+..... .. ....+|||||+|.+... .++.|..+++.
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~----~~----~~~~vlilDEi~~l~~~~~~~~~l~~l~~~ 158 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS----RL----RGIYIIVLDEIDFLPKRPGGQDLLYRITRI 158 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT----TS----CSEEEEEEETTTHHHHSTTHHHHHHHHHHG
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh----cc----CCeEEEEEccHhhhcccCCCChHHHhHhhc
Confidence 76554333222211 1111100 00 13459999999999876 66777666654
Q ss_pred c-----cCcceEEEEecCc---ccccccccCCc--eEEEecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHcC--
Q psy12150 164 E-----TKSTRFCLICNYV---SCIIQPLTSRC--SKFRFKPLAENTMLTRLQYICEQ--ESVMCDFKALETLVETSG-- 229 (456)
Q Consensus 164 ~-----~~~~~lIl~~~~~---~kl~~~l~~r~--~~i~f~~~~~~el~~~l~~~~~~--~~~~i~~~~l~~L~~~s~-- 229 (456)
. ...+++|++++.. ..+.+.+.+|+ ..+.|++++.+++..++...+.. .+..+++++++.+++.++
T Consensus 159 ~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (387)
T 2v1u_A 159 NQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAARE 238 (387)
T ss_dssp GGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSS
T ss_pred hhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHh
Confidence 3 4567788888765 56778888998 68999999999999999999876 567889999999999998
Q ss_pred -CCHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhCCC
Q psy12150 230 -GDMRRAITCLQSCARLK---GGEGIVNEDVLEVTGVI 263 (456)
Q Consensus 230 -gdlr~~~~~L~~~~~~~---~~~~It~~~v~~~~~~~ 263 (456)
||+|.+++.++.+...+ +...|+.+++.+++...
T Consensus 239 ~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 239 HGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 99999999999987765 45689999998876543
No 24
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.83 E-value=2.4e-19 Score=178.75 Aligned_cols=229 Identities=17% Similarity=0.130 Sum_probs=160.6
Q ss_pred CCCcchhccCCCCcccccccHHHHHHHHHHHh----cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCc-----c-ccceE
Q psy12150 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLS----GADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-----Y-RERIL 100 (456)
Q Consensus 31 ~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~----~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~-----~-~~~~~ 100 (456)
...+|..+|+| ++++|++..++.+..++. ++..++++|+||||+|||++++.+++.+.... . ...++
T Consensus 9 ~~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 85 (384)
T 2qby_B 9 PKVFIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQA 85 (384)
T ss_dssp TTTTTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEE
T ss_pred cHhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEE
Confidence 34689999999 678999999988876664 34445699999999999999999999873321 1 34678
Q ss_pred EeeCCCCc-ChHHH-HHHHHHHHHhhccCCCCCCC---------CCCCcEEEEEcCCCCccHHH-HHH-HHHHHHhccCc
Q psy12150 101 ELNASDDR-GIQVI-RDKVKTFAQQTASGFNQDGK---------PCPPFKIVILDEADSMTHAA-QAA-LRRTMEKETKS 167 (456)
Q Consensus 101 e~n~~~~~-~~~~i-~~~l~~~~~~~~~~~~~~~~---------~~~~~~iviIDE~d~l~~~~-~~~-Ll~~le~~~~~ 167 (456)
++++.... ....+ ...+..+............. ......+|||||+|.+.... ++. +..++... ..
T Consensus 86 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~ 164 (384)
T 2qby_B 86 YVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-AN 164 (384)
T ss_dssp EEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SC
T ss_pred EEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cc
Confidence 88876533 22222 11122211000000000000 00012299999999987643 444 44444443 66
Q ss_pred ceEEEEecCc---ccccccccCCc-eEEEecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHcC---CCHHHHHHH
Q psy12150 168 TRFCLICNYV---SCIIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQ--ESVMCDFKALETLVETSG---GDMRRAITC 238 (456)
Q Consensus 168 ~~lIl~~~~~---~kl~~~l~~r~-~~i~f~~~~~~el~~~l~~~~~~--~~~~i~~~~l~~L~~~s~---gdlr~~~~~ 238 (456)
+++|++++.. ..+.+++.+|+ ..++|++++.+++..++..++.. .+..+++++++.+++.++ ||+|.+++.
T Consensus 165 ~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~ 244 (384)
T 2qby_B 165 ISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNL 244 (384)
T ss_dssp EEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred eEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHH
Confidence 7888888865 56777888884 69999999999999999999875 456799999999999988 999999999
Q ss_pred HHHHHHhhC-CCCCCHHHHHHHhCCC
Q psy12150 239 LQSCARLKG-GEGIVNEDVLEVTGVI 263 (456)
Q Consensus 239 L~~~~~~~~-~~~It~~~v~~~~~~~ 263 (456)
++.+...+. ...|+.+++.+++...
T Consensus 245 l~~a~~~a~~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 245 LFRAAQLASGGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HHHHHHHTTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 999887764 4689999998876544
No 25
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.83 E-value=5.3e-19 Score=176.87 Aligned_cols=194 Identities=17% Similarity=0.162 Sum_probs=145.8
Q ss_pred cchhccCCCCcccccccHHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEE
Q psy12150 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSG------------ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILE 101 (456)
Q Consensus 34 ~w~eky~P~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e 101 (456)
.|+++|+|.+|++++|++.+++.|..++.. ....++|||||||||||++|+++++.+.. .+++
T Consensus 104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~ 178 (389)
T 3vfd_A 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFN 178 (389)
T ss_dssp TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEE
T ss_pred hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEE
Confidence 699999999999999999999999988721 12345999999999999999999998643 6788
Q ss_pred eeCCCCcCh--HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCcc-----------HHHHHHHHHHHHhc----
Q psy12150 102 LNASDDRGI--QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT-----------HAAQAALRRTMEKE---- 164 (456)
Q Consensus 102 ~n~~~~~~~--~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~-----------~~~~~~Ll~~le~~---- 164 (456)
+++++..+. +.....+.......... ...+|||||+|.+. ...+..|+..++..
T Consensus 179 v~~~~l~~~~~g~~~~~~~~~~~~a~~~---------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 179 ISAASLTSKYVGEGEKLVRALFAVAREL---------QPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp ECSCCC-------CHHHHHHHHHHHHHS---------SSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred eeHHHhhccccchHHHHHHHHHHHHHhc---------CCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 888764321 11112222222222111 22499999999883 23455666666633
Q ss_pred cCcceEEEEecCcccccccccCCce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q psy12150 165 TKSTRFCLICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241 (456)
Q Consensus 165 ~~~~~lIl~~~~~~kl~~~l~~r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~ 241 (456)
...+++|.++|.+..+.+++.+|+. .+.|..|+.++...++..++...+..++++.+..|+..+.|+.+..++.|..
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3457788888988899999999996 7999999999999999999999999999999999999999987766655533
No 26
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.81 E-value=5.1e-19 Score=172.45 Aligned_cols=196 Identities=16% Similarity=0.176 Sum_probs=145.9
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHh----------cC-CC-CeEEEECCCCCcHHHHHHHHHHHhcCCccccceE
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLS----------GA-DL-PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERIL 100 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~----------~~-~~-~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~ 100 (456)
..|..++.+.+|++++|++.+++.|++.+. .+ .+ .++|||||||||||++++++++.+.. .++
T Consensus 6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~ 80 (322)
T 3eie_A 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS-----TFF 80 (322)
T ss_dssp CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC-----EEE
T ss_pred cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC-----CEE
Confidence 467889999999999999999999998872 22 22 34999999999999999999998743 567
Q ss_pred EeeCCCC--cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH-----------HHHHHHHHHHHh---c
Q psy12150 101 ELNASDD--RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEK---E 164 (456)
Q Consensus 101 e~n~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~-----------~~~~~Ll~~le~---~ 164 (456)
.+++++. ...+.....+.......... ...+|||||+|.+.. ..+..++..++. .
T Consensus 81 ~v~~~~l~~~~~g~~~~~~~~~f~~a~~~---------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 151 (322)
T 3eie_A 81 SVSSSDLVSKWMGESEKLVKQLFAMAREN---------KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 151 (322)
T ss_dssp EEEHHHHHTTTGGGHHHHHHHHHHHHHHT---------SSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS
T ss_pred EEchHHHhhcccchHHHHHHHHHHHHHhc---------CCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc
Confidence 7776542 11222223333333222211 224999999999854 235667776653 3
Q ss_pred cCcceEEEEecCcccccccccCCce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Q psy12150 165 TKSTRFCLICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITCLQSC 242 (456)
Q Consensus 165 ~~~~~lIl~~~~~~kl~~~l~~r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g-dlr~~~~~L~~~ 242 (456)
...+++|.++|.+..+.+++.+|+. .+.|+.|+.++...+++..+...+..++++.++.|++.+.| +.+.+.+.++.+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a 231 (322)
T 3eie_A 152 SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDA 231 (322)
T ss_dssp CCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred CCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4567788888999999999999985 78999999999999999999988888999999999999987 455555555444
No 27
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.81 E-value=1.2e-18 Score=167.70 Aligned_cols=219 Identities=17% Similarity=0.137 Sum_probs=158.7
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceE
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG------------ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERIL 100 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~ 100 (456)
.-|.++|.|.+|++++|++.+++.+.+++.. ....+++|+||||||||++++++++.+.. .++
T Consensus 9 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~ 83 (297)
T 3b9p_A 9 DEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA-----TFL 83 (297)
T ss_dssp TTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEE
T ss_pred HHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeE
Confidence 3578889999999999999999999888732 12345999999999999999999998743 577
Q ss_pred EeeCCCCcCh--HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCcc-----------HHHHHHHHHHHHhcc--
Q psy12150 101 ELNASDDRGI--QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT-----------HAAQAALRRTMEKET-- 165 (456)
Q Consensus 101 e~n~~~~~~~--~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~-----------~~~~~~Ll~~le~~~-- 165 (456)
.+++++..+. ......+.......... ...+|||||+|.+. ...+..|+..++..+
T Consensus 84 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~---------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 154 (297)
T 3b9p_A 84 NISAASLTSKYVGDGEKLVRALFAVARHM---------QPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN 154 (297)
T ss_dssp EEESTTTSSSSCSCHHHHHHHHHHHHHHT---------CSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--
T ss_pred EeeHHHHhhcccchHHHHHHHHHHHHHHc---------CCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc
Confidence 7777653221 11111222221111111 23499999999884 234556777777654
Q ss_pred ---CcceEEEEecCcccccccccCCce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH-HHHH
Q psy12150 166 ---KSTRFCLICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI-TCLQ 240 (456)
Q Consensus 166 ---~~~~lIl~~~~~~kl~~~l~~r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~-~~L~ 240 (456)
..+++|.++|.+..+.+++.+|+. .+.++.|+.++...++...+...+..+++++++.+++.+.|..+..+ +.++
T Consensus 155 ~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 155 PDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp ----CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 346788888888889999999985 88999999999999999999988888999999999999999777555 4444
Q ss_pred HHHHhh---------------CCCCCCHHHHHHHhCCCCH
Q psy12150 241 SCARLK---------------GGEGIVNEDVLEVTGVIPK 265 (456)
Q Consensus 241 ~~~~~~---------------~~~~It~~~v~~~~~~~~~ 265 (456)
.++..+ ....|+.+|+..++....+
T Consensus 235 ~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 274 (297)
T 3b9p_A 235 DAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRR 274 (297)
T ss_dssp HHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCC
Confidence 443322 1246889999888776543
No 28
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=3.1e-18 Score=168.64 Aligned_cols=206 Identities=19% Similarity=0.249 Sum_probs=144.6
Q ss_pred CCCcccccccHHHHHHHHHHHh------------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC
Q psy12150 41 PKTIDDVIEQQEVVSVLKKCLS------------GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (456)
Q Consensus 41 P~~~~~ivg~~~~~~~l~~~l~------------~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~ 107 (456)
.-+|+++.|.+++++.|++.+. +..+|. +|||||||||||++|+++++++.. +++.+++++.
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~-----~f~~v~~s~l 218 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC-----KFIRVSGAEL 218 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC-----EEEEEEGGGG
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC-----CceEEEhHHh
Confidence 3589999999999999988763 223333 999999999999999999999754 5777777653
Q ss_pred c--ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH--------------HHHHHHHHHHh--ccCcce
Q psy12150 108 R--GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--------------AQAALRRTMEK--ETKSTR 169 (456)
Q Consensus 108 ~--~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~--------------~~~~Ll~~le~--~~~~~~ 169 (456)
. ..+.-...+..+...+... .|| ||||||+|.+... ....|+..|+. ....++
T Consensus 219 ~sk~vGese~~vr~lF~~Ar~~-----aP~----IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~ 289 (405)
T 4b4t_J 219 VQKYIGEGSRMVRELFVMAREH-----APS----IIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIK 289 (405)
T ss_dssp SCSSTTHHHHHHHHHHHHHHHT-----CSE----EEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEE
T ss_pred hccccchHHHHHHHHHHHHHHh-----CCc----eEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeE
Confidence 2 2223333333333333221 233 9999999998531 23456666663 345677
Q ss_pred EEEEecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Q psy12150 170 FCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITCLQSCARL 245 (456)
Q Consensus 170 lIl~~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g-dlr~~~~~L~~~~~~ 245 (456)
+|.+||.++.+++++.+ |+. .++|+.|+.++..++++.++++.+.. ++-.++.|++.+.| +-..+.+.+..++..
T Consensus 290 vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~eA~~~ 368 (405)
T 4b4t_J 290 IIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTEAGMY 368 (405)
T ss_dssp EEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred EEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 88899999999999987 665 89999999999999999888754432 22247889998876 444455555555444
Q ss_pred h---CCCCCCHHHHHHHhC
Q psy12150 246 K---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 246 ~---~~~~It~~~v~~~~~ 261 (456)
+ +...|+.+|+..++.
T Consensus 369 Air~~~~~vt~~Df~~Al~ 387 (405)
T 4b4t_J 369 ALRERRIHVTQEDFELAVG 387 (405)
T ss_dssp HHHTTCSBCCHHHHHHHHH
T ss_pred HHHcCCCCcCHHHHHHHHH
Confidence 4 456799999877664
No 29
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.80 E-value=1.1e-18 Score=169.01 Aligned_cols=213 Identities=16% Similarity=0.180 Sum_probs=155.7
Q ss_pred CcchhccCCCCc-------c-cccccHHHHHHHHHHHh---------------cCCCCeEEEECCCCCcHHHHHHHHHHH
Q psy12150 33 VPWVEKYRPKTI-------D-DVIEQQEVVSVLKKCLS---------------GADLPHFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 33 ~~w~eky~P~~~-------~-~ivg~~~~~~~l~~~l~---------------~~~~~~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
.++.+.|.+..+ + +++|++.+++.+.+.+. .....+++|+||||||||++++++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 11 IDLRAEYEGSGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCHHHHHHHTTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCChhhccccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 445556665543 3 68999999988887764 223335999999999999999999998
Q ss_pred hcCCcc--ccceEEeeCCCCcC--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCc---------cHHHHHH
Q psy12150 90 LFGDMY--RERILELNASDDRG--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM---------THAAQAA 156 (456)
Q Consensus 90 l~~~~~--~~~~~e~n~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l---------~~~~~~~ 156 (456)
+..... ...++++++++..+ .+.....+........ ..+|||||+|.+ ....++.
T Consensus 91 l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~------------~~vl~iDEid~l~~~~~~~~~~~~~~~~ 158 (309)
T 3syl_A 91 LHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAM------------GGVLFIDEAYYLYRPDNERDYGQEAIEI 158 (309)
T ss_dssp HHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHHT------------TSEEEEETGGGSCCCC---CCTHHHHHH
T ss_pred HHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhcC------------CCEEEEEChhhhccCCCcccccHHHHHH
Confidence 754222 23577777665321 1111222222222221 129999999987 6778899
Q ss_pred HHHHHHhccCcceEEEEecCcc-----cccccccCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---
Q psy12150 157 LRRTMEKETKSTRFCLICNYVS-----CIIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVET--- 227 (456)
Q Consensus 157 Ll~~le~~~~~~~lIl~~~~~~-----kl~~~l~~r~-~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~--- 227 (456)
|++.+++....+++|++++... .+.++|++|+ ..++|++|+.+++..++..++.+.+..+++++++.++..
T Consensus 159 Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~ 238 (309)
T 3syl_A 159 LLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGL 238 (309)
T ss_dssp HHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999888888888886432 3468999999 699999999999999999999999999999999999986
Q ss_pred -----cCCCHHHHHHHHHHHHHhh-------CCCCCCHHHHH
Q psy12150 228 -----SGGDMRRAITCLQSCARLK-------GGEGIVNEDVL 257 (456)
Q Consensus 228 -----s~gdlr~~~~~L~~~~~~~-------~~~~It~~~v~ 257 (456)
..||+|.+.+.++.++..+ .++.++.+++.
T Consensus 239 ~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 239 RRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HTTSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred hccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 4599999999999887522 23566666654
No 30
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.79 E-value=4.8e-18 Score=160.10 Aligned_cols=208 Identities=14% Similarity=0.085 Sum_probs=150.0
Q ss_pred cchhccCCCCcccccccHHHHHHHHHHHhc-----------CC-CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEE
Q psy12150 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSG-----------AD-LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILE 101 (456)
Q Consensus 34 ~w~eky~P~~~~~ivg~~~~~~~l~~~l~~-----------~~-~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e 101 (456)
+|.+++.+.+|++++|.+.+++.+.+.+.. .. ..+++|+||||||||++++++++.+.. +++.
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~ 75 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-----PFFT 75 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC-----CEEE
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC-----CEEE
Confidence 589999999999999999999887766431 12 334999999999999999999998743 4667
Q ss_pred eeCCCCcC------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH--------------HHHHHHHHHH
Q psy12150 102 LNASDDRG------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------------AAQAALRRTM 161 (456)
Q Consensus 102 ~n~~~~~~------~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~--------------~~~~~Ll~~l 161 (456)
+++.+... ...+...+... ... ...++|+||+|.+.. .....++..+
T Consensus 76 i~~~~~~~~~~~~~~~~~~~~~~~a----~~~---------~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l 142 (257)
T 1lv7_A 76 ISGSDFVEMFVGVGASRVRDMFEQA----KKA---------APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEM 142 (257)
T ss_dssp ECSCSSTTSCCCCCHHHHHHHHHHH----HTT---------CSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHH
T ss_pred EeHHHHHHHhhhhhHHHHHHHHHHH----HHc---------CCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHh
Confidence 77665321 12222222222 111 223999999977642 2344556666
Q ss_pred Hhc--cCcceEEEEecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHH
Q psy12150 162 EKE--TKSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFK-ALETLVETSGG-DMRR 234 (456)
Q Consensus 162 e~~--~~~~~lIl~~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~-~l~~L~~~s~g-dlr~ 234 (456)
+.. ...+++|.++|.+..+.+++.+ |+. .+.|+.|+.++..++++..+++.+ ++++ .+..++..+.| +.|.
T Consensus 143 ~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~--l~~~~~~~~la~~~~G~~~~d 220 (257)
T 1lv7_A 143 DGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGTPGFSGAD 220 (257)
T ss_dssp HTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHH
T ss_pred hCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHHcCCCCHHH
Confidence 542 3456788888888888888876 654 788999999999999988876543 3333 36778899999 9999
Q ss_pred HHHHHHHHHHhh---CCCCCCHHHHHHHhC
Q psy12150 235 AITCLQSCARLK---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 235 ~~~~L~~~~~~~---~~~~It~~~v~~~~~ 261 (456)
+.+.++.++.++ +...|+.+++.+++.
T Consensus 221 l~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 250 (257)
T 1lv7_A 221 LANLVNEAALFAARGNKRVVSMVEFEKAKD 250 (257)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 999999887766 356899999987664
No 31
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.79 E-value=1.6e-18 Score=172.41 Aligned_cols=218 Identities=17% Similarity=0.238 Sum_probs=156.1
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHhc----CCCCeEEEECCCCCcHHHHHHHHHHHhcCCcc-ccceEEeeCCCC
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG----ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY-RERILELNASDD 107 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~----~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~-~~~~~e~n~~~~ 107 (456)
.+|..+|.| ++++|++..++.+.+++.. +....++|+||+|+|||++++.+++.+..... ...++.+++...
T Consensus 11 ~~l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 11 EYLLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp GGGSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred hhCCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 567778888 6789999999999998874 33445999999999999999999998743211 235666665421
Q ss_pred cC----------------------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH----HHHHHHHHHH
Q psy12150 108 RG----------------------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH----AAQAALRRTM 161 (456)
Q Consensus 108 ~~----------------------~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~----~~~~~Ll~~l 161 (456)
.. ...+.+.+...... .+ ...+|||||++.+.. +....|.+.+
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~-------~~----~~~vlilDE~~~l~~~~~~~~l~~l~~~~ 156 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRD-------YG----SQVVIVLDEIDAFVKKYNDDILYKLSRIN 156 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHT-------CC----SCEEEEEETHHHHHHSSCSTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc-------cC----CeEEEEEcChhhhhccCcCHHHHHHhhch
Confidence 11 12222222222211 01 245999999999863 3455666666
Q ss_pred Hh-ccCcceEEEEecCc---ccccccccCCc--eEEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcC---C
Q psy12150 162 EK-ETKSTRFCLICNYV---SCIIQPLTSRC--SKFRFKPLAENTMLTRLQYICEQE--SVMCDFKALETLVETSG---G 230 (456)
Q Consensus 162 e~-~~~~~~lIl~~~~~---~kl~~~l~~r~--~~i~f~~~~~~el~~~l~~~~~~~--~~~i~~~~l~~L~~~s~---g 230 (456)
+. ....+.+|++++.. ..+.+.+.+|+ ..++|++++.+++.+++...+... ...+++++++.+++.++ |
T Consensus 157 ~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G 236 (386)
T 2qby_A 157 SEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG 236 (386)
T ss_dssp HSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC
T ss_pred hhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 54 23456777888765 45667788888 589999999999999999988753 36789999999999998 9
Q ss_pred CHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhCCCC
Q psy12150 231 DMRRAITCLQSCARLK---GGEGIVNEDVLEVTGVIP 264 (456)
Q Consensus 231 dlr~~~~~L~~~~~~~---~~~~It~~~v~~~~~~~~ 264 (456)
|+|.+++.++.++..+ +...|+.+++..++....
T Consensus 237 ~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 237 DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 9999999999887655 346899999998876543
No 32
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.79 E-value=7.8e-18 Score=166.34 Aligned_cols=194 Identities=14% Similarity=0.137 Sum_probs=143.4
Q ss_pred chhccCCCCcccccccHHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEe
Q psy12150 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSG------------ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILEL 102 (456)
Q Consensus 35 w~eky~P~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~ 102 (456)
+.+++.|.+|++++|++.+++.|.+.+.. ....++||+||||||||++++++++.+.. .++.+
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i 148 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSI 148 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEE
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEE
Confidence 56788899999999999999999988742 23345999999999999999999998643 57777
Q ss_pred eCCCCcC--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH-----------HHHHHHHHHHHh----cc
Q psy12150 103 NASDDRG--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEK----ET 165 (456)
Q Consensus 103 n~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~-----------~~~~~Ll~~le~----~~ 165 (456)
++++... .......+.......... ...+|||||+|.+.. ..+..|+..++. ..
T Consensus 149 ~~~~l~~~~~g~~~~~~~~~~~~a~~~---------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 149 SASSLTSKWVGEGEKMVRALFAVARCQ---------QPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp EGGGGCCSSTTHHHHHHHHHHHHHHHT---------CSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred ehHHhhccccchHHHHHHHHHHHHHhc---------CCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 7765322 112222222222222111 234999999988732 235566666663 23
Q ss_pred CcceEEEEecCcccccccccCCce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Q psy12150 166 KSTRFCLICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITCLQSC 242 (456)
Q Consensus 166 ~~~~lIl~~~~~~kl~~~l~~r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g-dlr~~~~~L~~~ 242 (456)
..+++|.++|.+..+.+++.+|+. .+.+..|+.++...++...++..+..++++.++.|++.+.| ..+.+.+.++.+
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a 298 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREA 298 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 467788888888889999999997 78999999999999999999988889999999999999988 444444444443
No 33
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.79 E-value=2.2e-18 Score=174.75 Aligned_cols=214 Identities=14% Similarity=0.186 Sum_probs=157.0
Q ss_pred cCCC-Cccccc-c--cHHHHHHHHHHHhcCC-CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHH
Q psy12150 39 YRPK-TIDDVI-E--QQEVVSVLKKCLSGAD-LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVI 113 (456)
Q Consensus 39 y~P~-~~~~iv-g--~~~~~~~l~~~l~~~~-~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i 113 (456)
..|. +|++++ | +......+..+..... .++++||||||+|||++++++++.+........++++++... ...+
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~--~~~~ 175 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF--LNDL 175 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH--HHHH
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH--HHHH
Confidence 4443 788888 5 3444566666666543 456999999999999999999998754322345677776542 1112
Q ss_pred HHHHH-----HHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH--HHHHHHHHHHHhc-cCcceEEEEecCc-cc---cc
Q psy12150 114 RDKVK-----TFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--AAQAALRRTMEKE-TKSTRFCLICNYV-SC---II 181 (456)
Q Consensus 114 ~~~l~-----~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~--~~~~~Ll~~le~~-~~~~~lIl~~~~~-~k---l~ 181 (456)
...+. .+.... . ....+|||||++.+.. ..++.|+..++.. .....+|++++.+ .. +.
T Consensus 176 ~~~~~~~~~~~~~~~~-~---------~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~ 245 (440)
T 2z4s_A 176 VDSMKEGKLNEFREKY-R---------KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_dssp HHHHHTTCHHHHHHHH-T---------TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCC
T ss_pred HHHHHcccHHHHHHHh-c---------CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHH
Confidence 11111 111110 0 0234999999999986 6778888887653 2334566666653 32 67
Q ss_pred ccccCCc---eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCHHHH
Q psy12150 182 QPLTSRC---SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNEDV 256 (456)
Q Consensus 182 ~~l~~r~---~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~--~~~~It~~~v 256 (456)
+++.+|+ ..+.|.+|+.+++..++...+...++.+++++++.|+..++||+|.+.+.|+.+..++ .+..||.+++
T Consensus 246 ~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~ 325 (440)
T 2z4s_A 246 DRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEA 325 (440)
T ss_dssp HHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHH
T ss_pred HHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 8899998 5899999999999999999999999999999999999999999999999999988877 4668999999
Q ss_pred HHHhCCCC
Q psy12150 257 LEVTGVIP 264 (456)
Q Consensus 257 ~~~~~~~~ 264 (456)
.+++....
T Consensus 326 ~~~l~~~~ 333 (440)
T 2z4s_A 326 ILLLKDFI 333 (440)
T ss_dssp HHHTSTTT
T ss_pred HHHHHHHh
Confidence 99988654
No 34
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=8e-18 Score=166.18 Aligned_cols=210 Identities=19% Similarity=0.232 Sum_probs=144.6
Q ss_pred hhccCCCCcccccccHHHHHHHHHHHh------------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEe
Q psy12150 36 VEKYRPKTIDDVIEQQEVVSVLKKCLS------------GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILEL 102 (456)
Q Consensus 36 ~eky~P~~~~~ivg~~~~~~~l~~~l~------------~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~ 102 (456)
.++--..+|++|.|.+++++.|++.+. +..+|. +|||||||||||++|+++|+++.. +++.+
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~-----~fi~v 247 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA-----TFLRI 247 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC-----EEEEE
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC-----CEEEE
Confidence 344445699999999999999988763 223333 999999999999999999999754 56777
Q ss_pred eCCCCcC--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH--------------HHHHHHHHHHh--c
Q psy12150 103 NASDDRG--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--------------AQAALRRTMEK--E 164 (456)
Q Consensus 103 n~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~--------------~~~~Ll~~le~--~ 164 (456)
++++... .+.....+..+...+... .|| ||||||+|.+... ....|+..++. .
T Consensus 248 ~~s~l~sk~vGesek~ir~lF~~Ar~~-----aP~----IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 248 VGSELIQKYLGDGPRLCRQIFKVAGEN-----APS----IVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp ESGGGCCSSSSHHHHHHHHHHHHHHHT-----CSE----EEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred EHHHhhhccCchHHHHHHHHHHHHHhc-----CCc----EEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 7665321 222223333333222211 233 9999999988431 23445555553 3
Q ss_pred cCcceEEEEecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHH
Q psy12150 165 TKSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFK-ALETLVETSGG-DMRRAITCL 239 (456)
Q Consensus 165 ~~~~~lIl~~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~-~l~~L~~~s~g-dlr~~~~~L 239 (456)
...+++|.+||.++.++++|.+ |+. .|+|+.|+.++..++++.++++.. ++++ .++.|++.+.| +-..+.+.+
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~--l~~dvdl~~LA~~T~GfSGADI~~l~ 396 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN--LSEDVNLETLVTTKDDLSGADIQAMC 396 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC--BCSCCCHHHHHHHCCSCCHHHHHHHH
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC--CCCcCCHHHHHHhCCCCCHHHHHHHH
Confidence 3467888999999999999987 665 799999999999999998887544 3332 47888988876 344444555
Q ss_pred HHHHHhh---CCCCCCHHHHHHHhC
Q psy12150 240 QSCARLK---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 240 ~~~~~~~---~~~~It~~~v~~~~~ 261 (456)
..++..+ +...|+.+|+..++.
T Consensus 397 ~eA~~~Air~~~~~It~eDf~~Al~ 421 (437)
T 4b4t_I 397 TEAGLLALRERRMQVTAEDFKQAKE 421 (437)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccCHHHHHHHHH
Confidence 5554444 456799999887764
No 35
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.78 E-value=3.8e-18 Score=168.34 Aligned_cols=199 Identities=15% Similarity=0.145 Sum_probs=139.0
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHh-----------cCCCC-eEEEECCCCCcHHHHHHHHHHHhcCCccccceE
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLS-----------GADLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERIL 100 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~-----------~~~~~-~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~ 100 (456)
..|..++.+.+|++++|++.+++.|++++. ...++ ++|||||||||||++++++++.+.. .++
T Consensus 39 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-----~~~ 113 (355)
T 2qp9_X 39 SAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS-----TFF 113 (355)
T ss_dssp --------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC-----EEE
T ss_pred hhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----CEE
Confidence 345667888999999999999999998873 12222 3999999999999999999999743 566
Q ss_pred EeeCCCCc--ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH-----------HHHHHHHHHHh---c
Q psy12150 101 ELNASDDR--GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA-----------AQAALRRTMEK---E 164 (456)
Q Consensus 101 e~n~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~-----------~~~~Ll~~le~---~ 164 (456)
.+++.+.. ..+.....+.......... ...+|||||+|.+... .++.|+..++. .
T Consensus 114 ~v~~~~l~~~~~g~~~~~~~~~f~~a~~~---------~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~ 184 (355)
T 2qp9_X 114 SVSSSDLVSKWMGESEKLVKQLFAMAREN---------KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 184 (355)
T ss_dssp EEEHHHHHSCC---CHHHHHHHHHHHHHT---------SSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC--
T ss_pred EeeHHHHhhhhcchHHHHHHHHHHHHHHc---------CCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc
Confidence 66654311 1111122222222221111 2349999999998632 35667777763 3
Q ss_pred cCcceEEEEecCcccccccccCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Q psy12150 165 TKSTRFCLICNYVSCIIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITCLQSC 242 (456)
Q Consensus 165 ~~~~~lIl~~~~~~kl~~~l~~r~-~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g-dlr~~~~~L~~~ 242 (456)
...+++|.++|.+..+.+++.+|+ ..+.+++|+.++...+++.++...+..+++..++.|++.+.| ..+.+.+.++.+
T Consensus 185 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A 264 (355)
T 2qp9_X 185 SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDA 264 (355)
T ss_dssp -CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 456778888899999999999999 488999999999999999999888877899999999999988 566666666665
Q ss_pred HHh
Q psy12150 243 ARL 245 (456)
Q Consensus 243 ~~~ 245 (456)
+..
T Consensus 265 ~~~ 267 (355)
T 2qp9_X 265 LMQ 267 (355)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 36
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.1e-17 Score=167.25 Aligned_cols=206 Identities=20% Similarity=0.247 Sum_probs=143.5
Q ss_pred CCCcccccccHHHHHHHHHHHh------------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC
Q psy12150 41 PKTIDDVIEQQEVVSVLKKCLS------------GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (456)
Q Consensus 41 P~~~~~ivg~~~~~~~l~~~l~------------~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~ 107 (456)
.-+|++|.|.+++++.|++.+. +-.+|. +|||||||||||++|++++++++. +++.+++++.
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~-----~~~~v~~s~l 251 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA-----NFIFSPASGI 251 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----EEEEEEGGGT
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEehhhh
Confidence 3489999999999999988763 223333 999999999999999999999754 5677777653
Q ss_pred cC--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH--------------HHHHHHHHHHHhc--cCcce
Q psy12150 108 RG--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------------AAQAALRRTMEKE--TKSTR 169 (456)
Q Consensus 108 ~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~--------------~~~~~Ll~~le~~--~~~~~ 169 (456)
.+ .+.....+..+...+... .|| ||||||+|.+.. .....|+..|+.. ...++
T Consensus 252 ~sk~~Gese~~ir~~F~~A~~~-----~P~----IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vi 322 (437)
T 4b4t_L 252 VDKYIGESARIIREMFAYAKEH-----EPC----IIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTK 322 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHS-----CSE----EEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSE
T ss_pred ccccchHHHHHHHHHHHHHHhc-----CCc----eeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeE
Confidence 22 222223333333332221 233 999999998842 1244566667643 34578
Q ss_pred EEEEecCcccccccccCCce---EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Q psy12150 170 FCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITCLQSCARL 245 (456)
Q Consensus 170 lIl~~~~~~kl~~~l~~r~~---~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g-dlr~~~~~L~~~~~~ 245 (456)
+|.+||.++.++++|.+++. .|+|+.|+.++...+++.++++.... ++..++.|++.+.| +-..+.+.+..++..
T Consensus 323 vI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~~~ 401 (437)
T 4b4t_L 323 IIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAGFF 401 (437)
T ss_dssp EEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHHHH
T ss_pred EEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 88999999999999987743 79999999999999999888764432 22347888998876 344444555555444
Q ss_pred h---CCCCCCHHHHHHHhC
Q psy12150 246 K---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 246 ~---~~~~It~~~v~~~~~ 261 (456)
+ +...|+.+|+..++.
T Consensus 402 air~~~~~i~~~d~~~Al~ 420 (437)
T 4b4t_L 402 AIRDDRDHINPDDLMKAVR 420 (437)
T ss_dssp HHHTTCSSBCHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHH
Confidence 4 566799999877653
No 37
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.77 E-value=8.2e-18 Score=162.53 Aligned_cols=209 Identities=18% Similarity=0.231 Sum_probs=146.1
Q ss_pred cccccHHHHHHHHHHHhc--------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcCh-
Q psy12150 46 DVIEQQEVVSVLKKCLSG--------------ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI- 110 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~~--------------~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~- 110 (456)
+++|++.+++.+...+.. ....+++|+||||||||++++++++.+.. .++.++++.....
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~-----~~~~i~~~~~~~~~ 90 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFTEVG 90 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGSSCC
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEcchhcccCC
Confidence 589999999998887754 23445999999999999999999998843 5667776543220
Q ss_pred --H-HHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHH------------HHHHHHHHHhc----------c
Q psy12150 111 --Q-VIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA------------QAALRRTMEKE----------T 165 (456)
Q Consensus 111 --~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~------------~~~Ll~~le~~----------~ 165 (456)
. .....+..+........... ....+|||||+|.+.... ++.|+++++.. .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~ 166 (310)
T 1ofh_A 91 YVGKEVDSIIRDLTDSAGGAIDAV----EQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKT 166 (310)
T ss_dssp SGGGSTTHHHHHHHHTTTTCHHHH----HHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEEC
T ss_pred ccCccHHHHHHHHHHHhhHHHhhc----cCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccC
Confidence 0 00111122111100000000 013399999999997543 78899999863 2
Q ss_pred CcceEEEEe----cCcccccccccCCce-EEEecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHH
Q psy12150 166 KSTRFCLIC----NYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQY-----------ICEQESV--MCDFKALETLVET 227 (456)
Q Consensus 166 ~~~~lIl~~----~~~~kl~~~l~~r~~-~i~f~~~~~~el~~~l~~-----------~~~~~~~--~i~~~~l~~L~~~ 227 (456)
..+++|+++ +.+..+.+++.+|+. .++|++++.+++..+++. .+...+. .+++++++.|++.
T Consensus 167 ~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~ 246 (310)
T 1ofh_A 167 DHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEA 246 (310)
T ss_dssp TTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHH
T ss_pred CcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHH
Confidence 356677664 345678889999996 699999999999999883 3333453 6899999999998
Q ss_pred c--------CCCHHHHHHHHHHHHHh-----h-C-CC--CCCHHHHHHHhCCC
Q psy12150 228 S--------GGDMRRAITCLQSCARL-----K-G-GE--GIVNEDVLEVTGVI 263 (456)
Q Consensus 228 s--------~gdlr~~~~~L~~~~~~-----~-~-~~--~It~~~v~~~~~~~ 263 (456)
+ .||+|.+.+.++.+... . . +. .|+.++|.+++...
T Consensus 247 ~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 247 AFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred hhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 8 79999999999987632 1 1 22 49999999988754
No 38
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.1e-17 Score=167.07 Aligned_cols=209 Identities=21% Similarity=0.241 Sum_probs=143.4
Q ss_pred CCCCcccccccHHHHHHHHHHHh------------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCC
Q psy12150 40 RPKTIDDVIEQQEVVSVLKKCLS------------GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD 106 (456)
Q Consensus 40 ~P~~~~~ivg~~~~~~~l~~~l~------------~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~ 106 (456)
-+.+|+++.|.+.+++.|++.+. +..+|. +|||||||||||++|+++++++.. +++.+++++
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~-----~f~~v~~s~ 250 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA-----TFLKLAAPQ 250 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----EEEEEEGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC-----CEEEEehhh
Confidence 34589999999999999987752 223333 999999999999999999999754 567777665
Q ss_pred CcC--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH-----------H---HHHHHHHHHHhc--cCcc
Q psy12150 107 DRG--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------A---AQAALRRTMEKE--TKST 168 (456)
Q Consensus 107 ~~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~-----------~---~~~~Ll~~le~~--~~~~ 168 (456)
... .+.....+..+...+... .|| ||||||+|.+.. . ....|+..|+.. ...+
T Consensus 251 l~~~~vGese~~ir~lF~~A~~~-----aP~----IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~V 321 (434)
T 4b4t_M 251 LVQMYIGEGAKLVRDAFALAKEK-----APT----IIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRV 321 (434)
T ss_dssp GCSSCSSHHHHHHHHHHHHHHHH-----CSE----EEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSS
T ss_pred hhhcccchHHHHHHHHHHHHHhc-----CCe----EEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCE
Confidence 321 122222333322222111 223 999999998732 1 234566666643 3456
Q ss_pred eEEEEecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Q psy12150 169 RFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITCLQSCAR 244 (456)
Q Consensus 169 ~lIl~~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g-dlr~~~~~L~~~~~ 244 (456)
++|.+||.++.+++++.+ |+. .++|+.|+.++..++++.++++.... ++-.++.|++.+.| +-..+.+.+..++.
T Consensus 322 iVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~sGADi~~l~~eA~~ 400 (434)
T 4b4t_M 322 KVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELARSTDEFNGAQLKAVTVEAGM 400 (434)
T ss_dssp EEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 788899999999999987 665 89999999999999999888765432 12237788988876 34444455554444
Q ss_pred hh---CCCCCCHHHHHHHhCCC
Q psy12150 245 LK---GGEGIVNEDVLEVTGVI 263 (456)
Q Consensus 245 ~~---~~~~It~~~v~~~~~~~ 263 (456)
.+ +...|+.+|+..++...
T Consensus 401 ~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 401 IALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHcCCCCcCHHHHHHHHHHH
Confidence 43 56789999998877654
No 39
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.77 E-value=9.4e-18 Score=160.44 Aligned_cols=209 Identities=15% Similarity=0.143 Sum_probs=144.9
Q ss_pred ccCCCCcccccccHHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeC
Q psy12150 38 KYRPKTIDDVIEQQEVVSVLKKCLSG-------------ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (456)
Q Consensus 38 ky~P~~~~~ivg~~~~~~~l~~~l~~-------------~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~ 104 (456)
...+.+|++++|++..++.+.+++.. ....+++|+||||||||++++++++.+.. .++.+++
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~-----~~~~v~~ 84 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA-----TFIRVVG 84 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-----EEEEEEG
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEeh
Confidence 34456899999999999999888743 23345999999999999999999998743 5666666
Q ss_pred CCCcC--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCc-----------cHHHHHHHHHHHHh-----ccC
Q psy12150 105 SDDRG--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM-----------THAAQAALRRTMEK-----ETK 166 (456)
Q Consensus 105 ~~~~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l-----------~~~~~~~Ll~~le~-----~~~ 166 (456)
.+... .......+.......... ...+|||||+|.+ ....+..+...++. ...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 85 SELVKKFIGEGASLVKDIFKLAKEK---------APSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp GGGCCCSTTHHHHHHHHHHHHHHHT---------CSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred HHHHHhccchHHHHHHHHHHHHHHc---------CCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 54211 122222222222222111 2249999999988 33445555555542 334
Q ss_pred cceEEEEecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Q psy12150 167 STRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITCLQSC 242 (456)
Q Consensus 167 ~~~lIl~~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g-dlr~~~~~L~~~ 242 (456)
.+++|+++|.+..+.+++.+ |+. .+.|++|+.++..++++..++..+.. .+..+..++..+.| ..+.+.+.+..+
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a 234 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEA 234 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 67788888888888888887 775 89999999999999999988765543 33346778888876 555666666655
Q ss_pred HHhh---CCCCCCHHHHHHHhC
Q psy12150 243 ARLK---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 243 ~~~~---~~~~It~~~v~~~~~ 261 (456)
...+ +...|+.+++.+++.
T Consensus 235 ~~~a~~~~~~~I~~~d~~~al~ 256 (285)
T 3h4m_A 235 GMNAIRELRDYVTMDDFRKAVE 256 (285)
T ss_dssp HHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHhccCcCCHHHHHHHHH
Confidence 5444 566799999988764
No 40
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.77 E-value=4.1e-17 Score=153.84 Aligned_cols=207 Identities=14% Similarity=0.076 Sum_probs=136.3
Q ss_pred CCCcccccccHHHHHHHHHHHhc------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCc
Q psy12150 41 PKTIDDVIEQQEVVSVLKKCLSG------------ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (456)
Q Consensus 41 P~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~ 108 (456)
+.+|++++|++.+++.+++.+.. ....+++|+||||||||++++++++.+.. .++.+++++..
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~~~~~~~~ 76 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV-----PFLAMAGAEFV 76 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----CEEEEETTTTS
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEechHHHH
Confidence 35799999999999888776531 12334999999999999999999998743 56777776532
Q ss_pred C--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH------------HHHH---HHHHHHHh--ccCcce
Q psy12150 109 G--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH------------AAQA---ALRRTMEK--ETKSTR 169 (456)
Q Consensus 109 ~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~------------~~~~---~Ll~~le~--~~~~~~ 169 (456)
. .......+.......... ...+|||||+|.+.. ..+. .++..++. ....++
T Consensus 77 ~~~~~~~~~~~~~~~~~a~~~---------~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 147 (262)
T 2qz4_A 77 EVIGGLGAARVRSLFKEARAR---------APCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVI 147 (262)
T ss_dssp SSSTTHHHHHHHHHHHHHHHT---------CSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEE
T ss_pred hhccChhHHHHHHHHHHHHhc---------CCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEE
Confidence 2 111112222222221111 224999999999842 2223 33444443 234677
Q ss_pred EEEEecCcccccccccC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCCC-HHHHHHHHHHHHH
Q psy12150 170 FCLICNYVSCIIQPLTS--RC-SKFRFKPLAENTMLTRLQYICEQESVMCDFKA-LETLVETSGGD-MRRAITCLQSCAR 244 (456)
Q Consensus 170 lIl~~~~~~kl~~~l~~--r~-~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~-l~~L~~~s~gd-lr~~~~~L~~~~~ 244 (456)
+|.++|.+..+.+++.+ |+ ..+.|++|+.++..++++..+++.+...+.+. ...++..+.|. .+.+.+.++.++.
T Consensus 148 vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~ 227 (262)
T 2qz4_A 148 VLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAAL 227 (262)
T ss_dssp EEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHT
T ss_pred EEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 88888888888888888 87 48899999999999999999998888777664 57889888774 4567777777665
Q ss_pred hh---CCCCCCHHHHHHHhC
Q psy12150 245 LK---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 245 ~~---~~~~It~~~v~~~~~ 261 (456)
.+ +...|+.+++..++.
T Consensus 228 ~a~~~~~~~i~~~d~~~a~~ 247 (262)
T 2qz4_A 228 HAAREGHTSVHTLNFEYAVE 247 (262)
T ss_dssp C--------CCBCCHHHHHH
T ss_pred HHHHcCCCCCCHHHHHHHHH
Confidence 54 245677777665543
No 41
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.75 E-value=4.4e-17 Score=158.61 Aligned_cols=195 Identities=15% Similarity=0.130 Sum_probs=139.8
Q ss_pred hccCCCCcccccccHHHHHHHHHHHh----------c-CCC-CeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeC
Q psy12150 37 EKYRPKTIDDVIEQQEVVSVLKKCLS----------G-ADL-PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (456)
Q Consensus 37 eky~P~~~~~ivg~~~~~~~l~~~l~----------~-~~~-~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~ 104 (456)
.++.+.+|++++|.+.+++.|++.+. + ..+ .++|||||||||||++++++++.+.+ ..++.+++
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~ 79 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISS 79 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEEC
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEh
Confidence 34556789999999999999988773 1 122 34999999999999999999998732 25667776
Q ss_pred CCCcCh--HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH-----------HHHHHHHHHHHh---ccCcc
Q psy12150 105 SDDRGI--QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEK---ETKST 168 (456)
Q Consensus 105 ~~~~~~--~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~-----------~~~~~Ll~~le~---~~~~~ 168 (456)
++.... +.....+.......... ...+|||||+|.+.. ...+.|+..++. ....+
T Consensus 80 ~~l~~~~~g~~~~~~~~lf~~a~~~---------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v 150 (322)
T 1xwi_A 80 SDLVSKWLGESEKLVKNLFQLAREN---------KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 150 (322)
T ss_dssp CSSCCSSCCSCHHHHHHHHHHHHHT---------SSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTE
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHhc---------CCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCE
Confidence 653211 11111222222221111 234999999999832 234556666664 34567
Q ss_pred eEEEEecCcccccccccCCce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHHH
Q psy12150 169 RFCLICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGD-MRRAITCLQSCAR 244 (456)
Q Consensus 169 ~lIl~~~~~~kl~~~l~~r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gd-lr~~~~~L~~~~~ 244 (456)
++|.++|.+..+.+++.+|+. .+.++.|+.++...+++..+...+..+++..++.|++.+.|. .+.+.+.++.++.
T Consensus 151 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~ 228 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALM 228 (322)
T ss_dssp EEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHT
T ss_pred EEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 788888999999999999994 899999999999999999998888888999999999999885 5555555555543
No 42
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.2e-17 Score=158.83 Aligned_cols=205 Identities=8% Similarity=0.091 Sum_probs=141.4
Q ss_pred chhccCCCCcccccccHHHHHHHH----HHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCC-----ccccceEEeeCC
Q psy12150 35 WVEKYRPKTIDDVIEQQEVVSVLK----KCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD-----MYRERILELNAS 105 (456)
Q Consensus 35 w~eky~P~~~~~ivg~~~~~~~l~----~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~-----~~~~~~~e~n~~ 105 (456)
..+.|.|.. -+.+++..++.+. ..+.++..++++|+||||||||++++.+++++... ...+.++++||.
T Consensus 12 l~~~~~~~~--~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~ 89 (318)
T 3te6_A 12 IRESLQKRE--LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL 89 (318)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT
T ss_pred hhhccCCcc--ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc
Confidence 344555532 2778887776665 44566777779999999999999999999998532 113578899988
Q ss_pred CCcChHHHHHHH-HHHHH-------------hhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHh---ccCcc
Q psy12150 106 DDRGIQVIRDKV-KTFAQ-------------QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEK---ETKST 168 (456)
Q Consensus 106 ~~~~~~~i~~~l-~~~~~-------------~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~---~~~~~ 168 (456)
.......+...+ ..+.. ..+... . .......||++||+|.+. .++.|..+++. ....+
T Consensus 90 ~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~-~--~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~ 164 (318)
T 3te6_A 90 ELAGMDALYEKIWFAISKENLCGDISLEALNFYITNV-P--KAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKL 164 (318)
T ss_dssp CCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHS-C--GGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCE
T ss_pred ccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHh-h--hccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcE
Confidence 755443332222 11100 000000 0 000134599999999998 56666666653 33456
Q ss_pred eEEEEecCcc----cccccccCCc--eEEEecCCCHHHHHHHHHHHHHHcCC----------------------------
Q psy12150 169 RFCLICNYVS----CIIQPLTSRC--SKFRFKPLAENTMLTRLQYICEQESV---------------------------- 214 (456)
Q Consensus 169 ~lIl~~~~~~----kl~~~l~~r~--~~i~f~~~~~~el~~~l~~~~~~~~~---------------------------- 214 (456)
++|+++|... .+.+++++|+ .++.|+|++.+++.++++.+++....
T Consensus 165 ~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (318)
T 3te6_A 165 SIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPD 244 (318)
T ss_dssp EEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CT
T ss_pred EEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccc
Confidence 7788887642 3566778887 57999999999999999999886321
Q ss_pred -------CCCHHHHHHHHH---HcCCCHHHHHHHHHHHHHhh
Q psy12150 215 -------MCDFKALETLVE---TSGGDMRRAITCLQSCARLK 246 (456)
Q Consensus 215 -------~i~~~~l~~L~~---~s~gdlr~~~~~L~~~~~~~ 246 (456)
.+++++++.+++ ...||+|.+++.|+.++..+
T Consensus 245 ~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~a 286 (318)
T 3te6_A 245 NVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEIS 286 (318)
T ss_dssp TEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHH
Confidence 379999999998 56899999999999988765
No 43
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.75 E-value=1.9e-17 Score=161.47 Aligned_cols=186 Identities=16% Similarity=0.207 Sum_probs=135.5
Q ss_pred Cccccc-c--cHHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHH
Q psy12150 43 TIDDVI-E--QQEVVSVLKKCLSGAD--LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKV 117 (456)
Q Consensus 43 ~~~~iv-g--~~~~~~~l~~~l~~~~--~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l 117 (456)
+|++++ | +......+..++.... ..+++|+||||+|||++++++++.+... ...++++++.+. ...+...+
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~~~--~~~~~~~~ 84 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSADDF--AQAMVEHL 84 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHHHH--HHHHHHHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHHHH--HHHHHHHH
Confidence 677887 4 4455667777776643 3459999999999999999999987433 235777776542 11111111
Q ss_pred -----HHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH--HHHHHHHHHHHhc-cCcceEEEEecCc-c---ccccccc
Q psy12150 118 -----KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--AAQAALRRTMEKE-TKSTRFCLICNYV-S---CIIQPLT 185 (456)
Q Consensus 118 -----~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~--~~~~~Ll~~le~~-~~~~~lIl~~~~~-~---kl~~~l~ 185 (456)
..+..... ...+|||||++.+.. ..++.++..++.. .....+|++++.. . .+.+++.
T Consensus 85 ~~~~~~~~~~~~~-----------~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~ 153 (324)
T 1l8q_A 85 KKGTINEFRNMYK-----------SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLV 153 (324)
T ss_dssp HHTCHHHHHHHHH-----------TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHH
T ss_pred HcCcHHHHHHHhc-----------CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhh
Confidence 11111100 123999999999975 5677777776542 2234555666543 3 4678899
Q ss_pred CCc---eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q psy12150 186 SRC---SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245 (456)
Q Consensus 186 ~r~---~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~ 245 (456)
+|+ ..++|++ +.++...++...+...+..+++++++.|+..+ ||+|.+.+.++.++.+
T Consensus 154 sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 154 SRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKLK 214 (324)
T ss_dssp HHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHHH
T ss_pred hcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHHHHHc
Confidence 998 6899999 99999999999999999999999999999999 9999999999998876
No 44
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.75 E-value=7.2e-18 Score=164.93 Aligned_cols=214 Identities=15% Similarity=0.124 Sum_probs=156.4
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHH
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQV 112 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~ 112 (456)
.+|.++++|..+++++|++..+..+...+..+ .+++|+||||||||++++++++.+.. .+..+++........
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~~-----~~~~i~~~~~~~~~~ 87 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMDL-----DFHRIQFTPDLLPSD 87 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTTC-----CEEEEECCTTCCHHH
T ss_pred HHHHHHHHHHhccceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhCC-----CeEEEecCCCCChhh
Confidence 57999999999999999999999998888765 36999999999999999999998744 455566543222221
Q ss_pred HHHHHHHHHHhhccCCC-----CCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhc-----------cCcceEEEEecC
Q psy12150 113 IRDKVKTFAQQTASGFN-----QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE-----------TKSTRFCLICNY 176 (456)
Q Consensus 113 i~~~l~~~~~~~~~~~~-----~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~-----------~~~~~lIl~~~~ 176 (456)
+. ........ ....+. ...++||||++.+....++.|++.+++. +..++++.++|.
T Consensus 88 l~-------g~~~~~~~~~~~~~~~g~l-~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 88 LI-------GTMIYNQHKGNFEVKKGPV-FSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp HH-------EEEEEETTTTEEEEEECTT-CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECT
T ss_pred cC-------CceeecCCCCceEeccCcc-cccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCC
Confidence 11 10000000 000000 1249999999999999999999999864 334555555553
Q ss_pred c-----ccccccccCCce-EEEecCCCHHHHHHHHHHHHHH----------------------cCCCCCHHHHHHHHHHc
Q psy12150 177 V-----SCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQ----------------------ESVMCDFKALETLVETS 228 (456)
Q Consensus 177 ~-----~kl~~~l~~r~~-~i~f~~~~~~el~~~l~~~~~~----------------------~~~~i~~~~l~~L~~~s 228 (456)
. ..+.+++.+|+. .+.+.+|+.++..++++..+.. .++.+++++++.++..+
T Consensus 160 ~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~ 239 (331)
T 2r44_A 160 VEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELV 239 (331)
T ss_dssp TCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHH
T ss_pred CcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 2 237789999998 5999999999999999887764 26778999999988654
Q ss_pred -----CC---------------CHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhC
Q psy12150 229 -----GG---------------DMRRAITCLQSCARLK---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 229 -----~g---------------dlr~~~~~L~~~~~~~---~~~~It~~~v~~~~~ 261 (456)
.+ ++|.+++.++.+..++ +...|+.+||.+++.
T Consensus 240 ~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~ 295 (331)
T 2r44_A 240 FATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAY 295 (331)
T ss_dssp HHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred HHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 22 6999999887765554 556799999987664
No 45
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.1e-16 Score=159.78 Aligned_cols=205 Identities=20% Similarity=0.233 Sum_probs=140.9
Q ss_pred CCcccccccHHHHHHHHHHHh------------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCc
Q psy12150 42 KTIDDVIEQQEVVSVLKKCLS------------GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (456)
Q Consensus 42 ~~~~~ivg~~~~~~~l~~~l~------------~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~ 108 (456)
.+|+++.|.+.+++.|++.+. +..+|. +|||||||||||++|+++|++++. +++.+++++..
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~-----~~~~v~~~~l~ 243 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA-----AFIRVNGSEFV 243 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC-----EEEEEEGGGTC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEecchhh
Confidence 489999999999999988763 223333 999999999999999999999754 56777766532
Q ss_pred C--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH--------------HHHHHHHHHHHhc--cCcceE
Q psy12150 109 G--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------------AAQAALRRTMEKE--TKSTRF 170 (456)
Q Consensus 109 ~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~--------------~~~~~Ll~~le~~--~~~~~l 170 (456)
+ .+.....+......+... .|| ++||||+|.+.. .....|+..|+.. ..++++
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~-----aP~----IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~v 314 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLAREN-----APS----IIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKV 314 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHT-----CSE----EEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEE
T ss_pred ccccchhHHHHHHHHHHHHHc-----CCC----eeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 1 222223333333322211 233 999999987632 1345566667643 346788
Q ss_pred EEEecCcccccccccC--Cce-EEEec-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Q psy12150 171 CLICNYVSCIIQPLTS--RCS-KFRFK-PLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITCLQSCARL 245 (456)
Q Consensus 171 Il~~~~~~kl~~~l~~--r~~-~i~f~-~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g-dlr~~~~~L~~~~~~ 245 (456)
|.+||.++.+.+++.+ |+. .|+|+ .|+.++...+++.++++.+.. ++..++.|+..+.| +-..+.+.+..++..
T Consensus 315 I~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~~eA~~~ 393 (428)
T 4b4t_K 315 IMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLR 393 (428)
T ss_dssp EEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred EEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 8899999999999987 554 78895 688999999999888754432 22347888988876 344445555555444
Q ss_pred h---CCCCCCHHHHHHHhC
Q psy12150 246 K---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 246 ~---~~~~It~~~v~~~~~ 261 (456)
+ +...|+.+|+.+++.
T Consensus 394 a~r~~~~~i~~~d~~~A~~ 412 (428)
T 4b4t_K 394 AVRKNRYVILQSDLEEAYA 412 (428)
T ss_dssp HHHTTCSSBCHHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHH
Confidence 3 566799999887653
No 46
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=5.1e-17 Score=162.00 Aligned_cols=205 Identities=19% Similarity=0.214 Sum_probs=140.0
Q ss_pred CCcccccccHHHHHHHHHHHh------------cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCc
Q psy12150 42 KTIDDVIEQQEVVSVLKKCLS------------GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (456)
Q Consensus 42 ~~~~~ivg~~~~~~~l~~~l~------------~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~ 108 (456)
-+|++|.|.+++++.|++.+. +..+|. +|||||||||||++|+++|+++.. +++.+++++..
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~-----~fi~vs~s~L~ 280 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA-----TFIRVIGSELV 280 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC-----EEEEEEGGGGC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC-----CeEEEEhHHhh
Confidence 589999999999999987752 223333 999999999999999999999754 56777766532
Q ss_pred C--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH--------------HHHHHHHHHHhc--cCcceE
Q psy12150 109 G--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--------------AQAALRRTMEKE--TKSTRF 170 (456)
Q Consensus 109 ~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~--------------~~~~Ll~~le~~--~~~~~l 170 (456)
+ .+.-...+..+...+... .|| ||||||+|.+... ....++..|+.. ...+++
T Consensus 281 sk~vGesek~ir~lF~~Ar~~-----aP~----IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViV 351 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTK-----KAC----IIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKV 351 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHT-----CSE----EEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEE
T ss_pred cccCCHHHHHHHHHHHHHHhc-----CCc----eEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEE
Confidence 1 222223333333322211 233 9999999988421 233455555532 345778
Q ss_pred EEEecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhh
Q psy12150 171 CLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITCLQSCARLK 246 (456)
Q Consensus 171 Il~~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g-dlr~~~~~L~~~~~~~ 246 (456)
|.+||.++.+.+++.+ |+. .++|+.|+.++..++++.+++..... .+-.++.|++.+.| +-..+.+.+..++..+
T Consensus 352 IaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eAa~~A 430 (467)
T 4b4t_H 352 MFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFA 430 (467)
T ss_dssp EEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 8889999999999987 665 89999999999999999888754332 12236788988876 3344444444444433
Q ss_pred ---CCCCCCHHHHHHHhC
Q psy12150 247 ---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 247 ---~~~~It~~~v~~~~~ 261 (456)
+...|+.+|+..++.
T Consensus 431 ir~~~~~it~~Df~~Al~ 448 (467)
T 4b4t_H 431 IRARRKVATEKDFLKAVD 448 (467)
T ss_dssp HHHTCSSBCHHHHHHHHH
T ss_pred HHcCCCccCHHHHHHHHH
Confidence 567889998877653
No 47
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.73 E-value=4.1e-17 Score=165.72 Aligned_cols=195 Identities=14% Similarity=0.147 Sum_probs=141.3
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHh----------c-CCC-CeEEEECCCCCcHHHHHHHHHHHhcCCccccceE
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLS----------G-ADL-PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERIL 100 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~----------~-~~~-~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~ 100 (456)
.-+..++.+.+|++++|++.+++.|.+.+. + ..+ .++|||||||||||++++++++.+.+ ..++
T Consensus 122 ~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~----~~~~ 197 (444)
T 2zan_A 122 GAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFF 197 (444)
T ss_dssp --CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS----SEEE
T ss_pred cceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC----CCEE
Confidence 345667888899999999999999998872 1 122 34999999999999999999998722 2566
Q ss_pred EeeCCCCcCh------HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH-----------HHHHHHHHHHHh
Q psy12150 101 ELNASDDRGI------QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEK 163 (456)
Q Consensus 101 e~n~~~~~~~------~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~-----------~~~~~Ll~~le~ 163 (456)
.+++++..+. ..+...+.... . . ...||||||+|.+.. ..++.|+..++.
T Consensus 198 ~v~~~~l~~~~~g~~~~~~~~~f~~a~-~---~---------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~ 264 (444)
T 2zan_A 198 SISSSDLVSKWLGESEKLVKNLFQLAR-E---N---------KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG 264 (444)
T ss_dssp EECCC---------CCCTHHHHHHHHH-H---S---------CSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTC
T ss_pred EEeHHHHHhhhcchHHHHHHHHHHHHH-H---c---------CCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhC
Confidence 7776653211 11222222111 1 1 234999999999832 345566666654
Q ss_pred ---ccCcceEEEEecCcccccccccCCce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Q psy12150 164 ---ETKSTRFCLICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITC 238 (456)
Q Consensus 164 ---~~~~~~lIl~~~~~~kl~~~l~~r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g-dlr~~~~~ 238 (456)
....+++|.++|.+..+.+++.+|+. .+.++.|+.++...+++.++...+..+++..++.|+..+.| ..+.+.+.
T Consensus 265 ~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 265 VGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp SSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 34567888899999999999999995 88999999999999999999887777899999999999988 55566666
Q ss_pred HHHHHH
Q psy12150 239 LQSCAR 244 (456)
Q Consensus 239 L~~~~~ 244 (456)
++.++.
T Consensus 345 ~~~a~~ 350 (444)
T 2zan_A 345 VRDALM 350 (444)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 655544
No 48
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.73 E-value=1.9e-17 Score=169.23 Aligned_cols=201 Identities=15% Similarity=0.179 Sum_probs=141.0
Q ss_pred CCCCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCc-----cccceEEee
Q psy12150 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-----YRERILELN 103 (456)
Q Consensus 29 ~~~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~-----~~~~~~e~n 103 (456)
.....+|.++|+|.++++++|++..++.+...+.+...++++|+||||||||++++++++.+.... ....++.++
T Consensus 164 ~~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 164 DSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp HSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred HHHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 456789999999999999999999999999999887777899999999999999999999985422 123566666
Q ss_pred CCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcc-----
Q psy12150 104 ASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS----- 178 (456)
Q Consensus 104 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~----- 178 (456)
++. ...+.....+.......... ...++||| ...+.++.|++.|+.. .+++|.++|...
T Consensus 244 ~~~-~~~g~~e~~~~~~~~~~~~~---------~~~iLfiD----~~~~a~~~L~~~L~~g--~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 244 MGT-KYRGEFEDRLKKVMDEIRQA---------GNIILFID----AAIDASNILKPSLARG--ELQCIGATTLDEYRKYI 307 (468)
T ss_dssp ----------CTTHHHHHHHHHTC---------CCCEEEEC----C--------CCCTTSS--SCEEEEECCTTTTHHHH
T ss_pred CCc-cccchHHHHHHHHHHHHHhc---------CCeEEEEe----CchhHHHHHHHhhcCC--CEEEEecCCHHHHHHHh
Confidence 651 11111111222222111111 12399999 3445667777777643 467777777554
Q ss_pred cccccccCCceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHHHHh
Q psy12150 179 CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ----ESVMCDFKALETLVETSGGD------MRRAITCLQSCARL 245 (456)
Q Consensus 179 kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~----~~~~i~~~~l~~L~~~s~gd------lr~~~~~L~~~~~~ 245 (456)
.+.+++.+||..+.|.+|+.+++..+++..+.. .++.++++++..++..+.+. ++.++..++.++..
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~ 384 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSK 384 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHH
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHH
Confidence 578899999999999999999999999988766 78899999999999877543 45788888776653
No 49
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.73 E-value=4.9e-17 Score=153.89 Aligned_cols=212 Identities=16% Similarity=0.168 Sum_probs=139.1
Q ss_pred CcccccccHHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHH
Q psy12150 43 TIDDVIEQQEVVSVLKKCLSG--ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120 (456)
Q Consensus 43 ~~~~ivg~~~~~~~l~~~l~~--~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~ 120 (456)
+|++++|++..+..+.+.+.. ....+++|+||||||||++++++++..... ...++.++++... ...+...+...
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~~-~~~~~~~l~g~ 80 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAALN-ENLLDSELFGH 80 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGSC-HHHHHHHHHCC
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCCC-hhHHHHHhcCC
Confidence 688999999888877766643 223459999999999999999999986533 2368888887642 22222211100
Q ss_pred HHhhccCCC--CCCC-CCCCcEEEEEcCCCCccHHHHHHHHHHHHhc-----------cCcceEEEEecCc-------cc
Q psy12150 121 AQQTASGFN--QDGK-PCPPFKIVILDEADSMTHAAQAALRRTMEKE-----------TKSTRFCLICNYV-------SC 179 (456)
Q Consensus 121 ~~~~~~~~~--~~~~-~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~-----------~~~~~lIl~~~~~-------~k 179 (456)
....+.+.. ..+. ..+...+|||||++.+..+.++.|++++++. ...+.+|+++|.. ..
T Consensus 81 ~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~ 160 (265)
T 2bjv_A 81 EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGT 160 (265)
T ss_dssp C---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTS
T ss_pred cccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCC
Confidence 000000000 0000 0013349999999999999999999999864 2457788888863 23
Q ss_pred ccccccCCce--EEEecCCCH--HHHHHHHH----HHHHHcCC----CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhh
Q psy12150 180 IIQPLTSRCS--KFRFKPLAE--NTMLTRLQ----YICEQESV----MCDFKALETLVETS-GGDMRRAITCLQSCARLK 246 (456)
Q Consensus 180 l~~~l~~r~~--~i~f~~~~~--~el~~~l~----~~~~~~~~----~i~~~~l~~L~~~s-~gdlr~~~~~L~~~~~~~ 246 (456)
+.+++.+|+. .++++++.. +++..++. ..+.+.+. .+++++++.|.... +||+|.+.+.++.++..+
T Consensus 161 ~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 161 FRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp SCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 5577888875 577888875 56665544 44444554 68999999998775 999999999999998877
Q ss_pred CCCCCCHHHHH
Q psy12150 247 GGEGIVNEDVL 257 (456)
Q Consensus 247 ~~~~It~~~v~ 257 (456)
.++.|+.+++.
T Consensus 241 ~~~~i~~~~l~ 251 (265)
T 2bjv_A 241 GTSDYPLDDII 251 (265)
T ss_dssp CCSSSCBCCCC
T ss_pred CCCcCcHHHcc
Confidence 77778877653
No 50
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.72 E-value=5.7e-17 Score=159.49 Aligned_cols=222 Identities=13% Similarity=0.082 Sum_probs=144.2
Q ss_pred ccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcC------Cccc---------------
Q psy12150 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG------DMYR--------------- 96 (456)
Q Consensus 38 ky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~------~~~~--------------- 96 (456)
.-+|.+|++++|++..+..+...+......+++|+||||||||++++++++.+.. ..+.
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLS 96 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSC
T ss_pred CCCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhc
Confidence 3357789999999998877666554444456999999999999999999998753 1110
Q ss_pred -------cceEEeeCCCCcChHHHHHH--HHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhc---
Q psy12150 97 -------ERILELNASDDRGIQVIRDK--VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE--- 164 (456)
Q Consensus 97 -------~~~~e~n~~~~~~~~~i~~~--l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~--- 164 (456)
..++.+.... ....+... +..................+...+|||||++.+..+.++.|++.+++.
T Consensus 97 ~~~~~~~~~~~~~~~~~--~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~ 174 (350)
T 1g8p_A 97 TNVIRKPTPVVDLPLGV--SEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENV 174 (350)
T ss_dssp CCEEEECCCEEEECTTC--CHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEE
T ss_pred cccccCCCcccccCCCc--chhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCceE
Confidence 0111111111 11111100 000000100000000000012459999999999999999999999863
Q ss_pred ----------cCcceEEEEecCc-ccccccccCCceE-EEecCCC-HHHHHHHHHHH-----------------------
Q psy12150 165 ----------TKSTRFCLICNYV-SCIIQPLTSRCSK-FRFKPLA-ENTMLTRLQYI----------------------- 208 (456)
Q Consensus 165 ----------~~~~~lIl~~~~~-~kl~~~l~~r~~~-i~f~~~~-~~el~~~l~~~----------------------- 208 (456)
+..+++|.++|.. ..+.++|.+|+.. +++.+++ .++..+++..+
T Consensus 175 ~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (350)
T 1g8p_A 175 VERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRN 254 (350)
T ss_dssp ECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHH
Confidence 2356677777753 3788999999975 9999995 44444555442
Q ss_pred ------HHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhC
Q psy12150 209 ------CEQESVMCDFKALETLVETSGG----DMRRAITCLQSCARLK---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 209 ------~~~~~~~i~~~~l~~L~~~s~g----dlr~~~~~L~~~~~~~---~~~~It~~~v~~~~~ 261 (456)
....++.+++++++.|+..+.+ ++|.+.+.++.+..++ +...|+.++|.+++.
T Consensus 255 ~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~ 320 (350)
T 1g8p_A 255 QILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVAT 320 (350)
T ss_dssp HHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 2234568999999999988765 8999999998876665 445799999987664
No 51
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.71 E-value=6.1e-17 Score=156.68 Aligned_cols=187 Identities=16% Similarity=0.239 Sum_probs=140.4
Q ss_pred ccccccHHHHHHHHHHHhcCC--------CC-eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHH
Q psy12150 45 DDVIEQQEVVSVLKKCLSGAD--------LP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD 115 (456)
Q Consensus 45 ~~ivg~~~~~~~l~~~l~~~~--------~~-~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~ 115 (456)
++++|++.+++.+...+..+. +. +++|+||||||||++++++++.+..... .++.++++..........
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~--~~~~~~~~~~~~~~~~~~ 94 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEE--AMIRIDMTEYMEKHAVSR 94 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGG--GEEEEEGGGCCSTTHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCc--ceEEeecccccccccHHH
Confidence 367899999998888876542 22 4999999999999999999999865432 567777765433221111
Q ss_pred HH---------------HHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------Ccce
Q psy12150 116 KV---------------KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTR 169 (456)
Q Consensus 116 ~l---------------~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~ 169 (456)
.+ ...... .++.++||||++.+....++.|++.+++.. .+++
T Consensus 95 l~g~~~~~~~~~~~~~~~~~~~~------------~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 162 (311)
T 4fcw_A 95 LIGAPPGYVGYEEGGQLTEAVRR------------RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTV 162 (311)
T ss_dssp HHCCCTTSTTTTTCCHHHHHHHH------------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEE
T ss_pred hcCCCCccccccccchHHHHHHh------------CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcE
Confidence 11 111111 134599999999999999999999998754 3566
Q ss_pred EEEEecC--------------------------cccccccccCCc-eEEEecCCCHHHHHHHHHHHHHHc---------C
Q psy12150 170 FCLICNY--------------------------VSCIIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQE---------S 213 (456)
Q Consensus 170 lIl~~~~--------------------------~~kl~~~l~~r~-~~i~f~~~~~~el~~~l~~~~~~~---------~ 213 (456)
+|+++|. ...+.++|.+|+ ..+.|.|++.+++..++...+.+. .
T Consensus 163 iI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~ 242 (311)
T 4fcw_A 163 IIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRIS 242 (311)
T ss_dssp EEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCE
T ss_pred EEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcE
Confidence 8888887 345677888999 589999999999999988876542 3
Q ss_pred CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHHh
Q psy12150 214 VMCDFKALETLVETS---GGDMRRAITCLQSCARL 245 (456)
Q Consensus 214 ~~i~~~~l~~L~~~s---~gdlr~~~~~L~~~~~~ 245 (456)
..+++++++.|+..+ +|++|.+.+.++.++..
T Consensus 243 ~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~ 277 (311)
T 4fcw_A 243 LELTEAAKDFLAERGYDPVFGARPLRRVIQRELET 277 (311)
T ss_dssp EEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHH
T ss_pred EEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHH
Confidence 568999999999965 59999999999887653
No 52
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.71 E-value=5.9e-16 Score=157.12 Aligned_cols=206 Identities=22% Similarity=0.222 Sum_probs=143.9
Q ss_pred CCCCcccccccHHHHHHHHHHHhc-----------CCCC-eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC
Q psy12150 40 RPKTIDDVIEQQEVVSVLKKCLSG-----------ADLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (456)
Q Consensus 40 ~P~~~~~ivg~~~~~~~l~~~l~~-----------~~~~-~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~ 107 (456)
.+.+|++++|.+..+..+++.+.. ...+ +++|+||||||||+++++++..... +++.+++++.
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~-----~f~~is~~~~ 85 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV-----PFFHISGSDF 85 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC-----CEEEEEGGGT
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC-----CeeeCCHHHH
Confidence 345899999999998888776531 2233 4999999999999999999998743 5667776653
Q ss_pred cC--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH--------------HHHHHHHHHHHh--ccCcce
Q psy12150 108 RG--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------------AAQAALRRTMEK--ETKSTR 169 (456)
Q Consensus 108 ~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~--------------~~~~~Ll~~le~--~~~~~~ 169 (456)
.. ...-...+.......... ...+|||||+|.+.. ..++.|+..++. ....++
T Consensus 86 ~~~~~g~~~~~~r~lf~~A~~~---------~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~vi 156 (476)
T 2ce7_A 86 VELFVGVGAARVRDLFAQAKAH---------APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGII 156 (476)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHT---------CSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEE
T ss_pred HHHHhcccHHHHHHHHHHHHhc---------CCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEE
Confidence 21 111112222222222111 223999999998843 234566666653 234577
Q ss_pred EEEEecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCCCH-HHHHHHHHHHHH
Q psy12150 170 FCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFK-ALETLVETSGGDM-RRAITCLQSCAR 244 (456)
Q Consensus 170 lIl~~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~-~l~~L~~~s~gdl-r~~~~~L~~~~~ 244 (456)
+|.++|.+..+.+++.+ |+. .+.+++|+.++..++++..++... +.++ .+..++..++|+. +.+.+.++.++.
T Consensus 157 VIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~--l~~~v~l~~la~~t~G~sgadL~~lv~~Aal 234 (476)
T 2ce7_A 157 VMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP--LAEDVNLEIIAKRTPGFVGADLENLVNEAAL 234 (476)
T ss_dssp EEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred EEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC--CcchhhHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 88888888888888876 655 889999999999999988876543 3333 3778999999987 788888888766
Q ss_pred hh---CCCCCCHHHHHHHhC
Q psy12150 245 LK---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 245 ~~---~~~~It~~~v~~~~~ 261 (456)
.+ +...|+.+++..++.
T Consensus 235 ~A~~~~~~~I~~~dl~~al~ 254 (476)
T 2ce7_A 235 LAAREGRDKITMKDFEEAID 254 (476)
T ss_dssp HHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHcCCCeecHHHHHHHHH
Confidence 65 356899999987764
No 53
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.69 E-value=5.6e-16 Score=149.47 Aligned_cols=210 Identities=15% Similarity=0.153 Sum_probs=143.2
Q ss_pred ccccccHHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHH
Q psy12150 45 DDVIEQQEVVSVLKKCLSG--ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQ 122 (456)
Q Consensus 45 ~~ivg~~~~~~~l~~~l~~--~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~ 122 (456)
++++|++..+..+.+.+.. ....+++|+||||||||++|+++++..... ..+++.+|+..... ..+...+.....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~--~~~~v~v~~~~~~~-~l~~~~lfg~~~ 78 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARS--DRPLVTLNCAALNE-SLLESELFGHEK 78 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCS--SSCCCEEECSSCCH-HHHHHHHTCCCS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCccc--CCCeEEEeCCCCCh-HHHHHHhcCccc
Confidence 3688998888888777754 233459999999999999999999975432 33678888876422 111111100000
Q ss_pred hhccCCCCCCCCC----CCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc-------ccc
Q psy12150 123 QTASGFNQDGKPC----PPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------SCI 180 (456)
Q Consensus 123 ~~~~~~~~~~~~~----~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~-------~kl 180 (456)
..+.+ ....... ++..+|||||++.++.+.+..|++.+++.. ..+.+|+++|.. ..+
T Consensus 79 g~~tg-~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~f 157 (304)
T 1ojl_A 79 GAFTG-ADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRF 157 (304)
T ss_dssp SCCC----CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSS
T ss_pred cccCc-hhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCc
Confidence 00000 0000000 123499999999999999999999998753 357788888864 234
Q ss_pred cccccCCce--EEEecCCC--HHHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhCC
Q psy12150 181 IQPLTSRCS--KFRFKPLA--ENTMLTRLQYICE----QES---VMCDFKALETLVETS-GGDMRRAITCLQSCARLKGG 248 (456)
Q Consensus 181 ~~~l~~r~~--~i~f~~~~--~~el~~~l~~~~~----~~~---~~i~~~~l~~L~~~s-~gdlr~~~~~L~~~~~~~~~ 248 (456)
.+.|..|+. .++++|+. .+++..++...++ +.+ ..+++++++.|..++ +||+|++.+.++.++..+.+
T Consensus 158 r~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~~~ 237 (304)
T 1ojl_A 158 RQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLLTG 237 (304)
T ss_dssp CHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCC
Confidence 456777764 57788887 4666665554433 333 568999999999987 99999999999999888777
Q ss_pred CCCCHHHHHH
Q psy12150 249 EGIVNEDVLE 258 (456)
Q Consensus 249 ~~It~~~v~~ 258 (456)
..|+.+++..
T Consensus 238 ~~i~~~~l~~ 247 (304)
T 1ojl_A 238 EYISERELPL 247 (304)
T ss_dssp SSBCGGGSCG
T ss_pred CcccHHhhhh
Confidence 7888887754
No 54
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.69 E-value=7.4e-16 Score=148.55 Aligned_cols=188 Identities=18% Similarity=0.180 Sum_probs=128.5
Q ss_pred ccCCCCcccccccHHHHHHHHHHHhc------------CCC-CeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeC
Q psy12150 38 KYRPKTIDDVIEQQEVVSVLKKCLSG------------ADL-PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (456)
Q Consensus 38 ky~P~~~~~ivg~~~~~~~l~~~l~~------------~~~-~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~ 104 (456)
++.+.+|++++|.+.+++.|++++.. ... .+++||||||||||++++++++.+.. .++.+++
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-----~~i~v~~ 82 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIKG 82 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----EEEEECH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-----CEEEEEh
Confidence 44567899999999999999888753 122 34999999999999999999998743 5666665
Q ss_pred CCCc------ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH--------------HHHHHHHHHHhc
Q psy12150 105 SDDR------GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--------------AQAALRRTMEKE 164 (456)
Q Consensus 105 ~~~~------~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~--------------~~~~Ll~~le~~ 164 (456)
.+.. ....+...+.... .. ...+|||||+|.+... .+..|+..++..
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~----~~---------~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~ 149 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKAR----QA---------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 149 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHH----HT---------CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS
T ss_pred HHHHhhhcCchHHHHHHHHHHHH----hc---------CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc
Confidence 4311 0111222222211 11 2239999999988654 256778878742
Q ss_pred --cCcceEEEEecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Q psy12150 165 --TKSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITC 238 (456)
Q Consensus 165 --~~~~~lIl~~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g-dlr~~~~~ 238 (456)
...+++|.++|.+..+.+++.+ |+. .+.|++|+.++..++++..+++.+.. .+..++.++..+.| .-+.+.+.
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~l 228 (301)
T 3cf0_A 150 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEI 228 (301)
T ss_dssp CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHHH
T ss_pred cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHHH
Confidence 3467888888988889898887 774 89999999999999999998876543 22234566666654 33445555
Q ss_pred HHHHHH
Q psy12150 239 LQSCAR 244 (456)
Q Consensus 239 L~~~~~ 244 (456)
++.++.
T Consensus 229 ~~~a~~ 234 (301)
T 3cf0_A 229 CQRACK 234 (301)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 55
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.67 E-value=1.8e-16 Score=141.40 Aligned_cols=164 Identities=17% Similarity=0.193 Sum_probs=116.7
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCc-----cccceEEeeCCC
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-----YRERILELNASD 106 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~-----~~~~~~e~n~~~ 106 (456)
..+|.++|+|.+|++++|++..++.+.+++..+...+++|+||+|+|||++++++++.+.... ....++.+++..
T Consensus 9 ~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (195)
T 1jbk_A 9 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 88 (195)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH
T ss_pred hHHHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH
Confidence 468999999999999999999999999999887767799999999999999999999874311 122455555432
Q ss_pred C----cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH--------HHHHHHHHHHhccCcceEEEEe
Q psy12150 107 D----RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--------AQAALRRTMEKETKSTRFCLIC 174 (456)
Q Consensus 107 ~----~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~--------~~~~Ll~~le~~~~~~~lIl~~ 174 (456)
. .........+..+....... ....+|+|||++.+... .++.|..+++.. .+.+|+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~--~~~~i~~~ 158 (195)
T 1jbk_A 89 LVAGAKYRGEFEERLKGVLNDLAKQ--------EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--ELHCVGAT 158 (195)
T ss_dssp HHTTTCSHHHHHHHHHHHHHHHHHS--------TTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT--SCCEEEEE
T ss_pred HhccCCccccHHHHHHHHHHHHhhc--------CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccC--CeEEEEeC
Confidence 1 12222333333333221111 13349999999999632 255666666543 46677777
Q ss_pred cCcc-----cccccccCCceEEEecCCCHHHHHHHH
Q psy12150 175 NYVS-----CIIQPLTSRCSKFRFKPLAENTMLTRL 205 (456)
Q Consensus 175 ~~~~-----kl~~~l~~r~~~i~f~~~~~~el~~~l 205 (456)
+... .+.+++.+|+..+.|.+|+.++..+++
T Consensus 159 ~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 159 TLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 7543 567889999999999999999987764
No 56
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.66 E-value=1.8e-15 Score=154.68 Aligned_cols=219 Identities=16% Similarity=0.128 Sum_probs=148.5
Q ss_pred hccCCCCcccccccHHHHHHHHHHHhc-------------CCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEee
Q psy12150 37 EKYRPKTIDDVIEQQEVVSVLKKCLSG-------------ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELN 103 (456)
Q Consensus 37 eky~P~~~~~ivg~~~~~~~l~~~l~~-------------~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n 103 (456)
+.+.+.+|++++|++..++.+++++.. ....++|||||||||||++++++++.+. ..++.+|
T Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~-----~~fv~vn 270 (489)
T 3hu3_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG-----AFFFLIN 270 (489)
T ss_dssp HHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS-----SEEEEEE
T ss_pred cccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC-----CCEEEEE
Confidence 356677899999999999999888753 2233499999999999999999999863 3677787
Q ss_pred CCCCc--ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH-----------HHHHHHHHHHHhc--cCcc
Q psy12150 104 ASDDR--GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEKE--TKST 168 (456)
Q Consensus 104 ~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~-----------~~~~~Ll~~le~~--~~~~ 168 (456)
+.+.. ..+.....+.......... ...+|||||+|.+.. ..+..|++.|+.. ...+
T Consensus 271 ~~~l~~~~~g~~~~~~~~~f~~A~~~---------~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 271 GPEIMSKLAGESESNLRKAFEEAEKN---------APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHHHHT---------CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred chHhhhhhcchhHHHHHHHHHHHHhc---------CCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 65421 1122222233322222211 223999999976643 4577888888853 3467
Q ss_pred eEEEEecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHHH
Q psy12150 169 RFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGD-MRRAITCLQSCAR 244 (456)
Q Consensus 169 ~lIl~~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gd-lr~~~~~L~~~~~ 244 (456)
++|.++|.+..+.+++.+ |+. .+.|..|+.++..++++.+++..+.. .+..+..++..+.|. .+.+.+.++.++.
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~~L~~~A~~ 420 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAAL 420 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 788888888889999988 554 79999999999999999888755433 233467788888774 4445555555554
Q ss_pred hh--C-CC-----------------CCCHHHHHHHhCCCCHHHHHH
Q psy12150 245 LK--G-GE-----------------GIVNEDVLEVTGVIPKPWIEK 270 (456)
Q Consensus 245 ~~--~-~~-----------------~It~~~v~~~~~~~~~~~i~~ 270 (456)
.+ . .. .|+.+++..++....++.+.+
T Consensus 421 ~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re 466 (489)
T 3hu3_A 421 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRE 466 (489)
T ss_dssp HHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHG
T ss_pred HHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhc
Confidence 44 1 11 356667766666655544433
No 57
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.65 E-value=4.1e-16 Score=170.85 Aligned_cols=207 Identities=15% Similarity=0.133 Sum_probs=143.2
Q ss_pred CCCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCc-----cccceEEeeC
Q psy12150 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-----YRERILELNA 104 (456)
Q Consensus 30 ~~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~-----~~~~~~e~n~ 104 (456)
....+|.++|+|.+|++++|++..++.+.+.+..+..++++|+||||+|||++++.+++.+.... ....++.+++
T Consensus 155 ~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 155 QYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp HHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred HHHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 34678999999999999999999999999999888777899999999999999999999874321 1335677776
Q ss_pred CCCcC----hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCcc--------HHHHHHHHHHHHhccCcceEEE
Q psy12150 105 SDDRG----IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT--------HAAQAALRRTMEKETKSTRFCL 172 (456)
Q Consensus 105 ~~~~~----~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~--------~~~~~~Ll~~le~~~~~~~lIl 172 (456)
+.... .......+.......... ....+|||||++.+. .+..+.|..+++.. .+.+|.
T Consensus 235 ~~l~~g~~~~g~~~~~l~~~~~~~~~~--------~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I~ 304 (854)
T 1qvr_A 235 GSLLAGAKYRGEFEERLKAVIQEVVQS--------QGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIG 304 (854)
T ss_dssp -----------CHHHHHHHHHHHHHTT--------CSSEEEEECCC-------------------HHHHHTT--CCCEEE
T ss_pred HHhhccCccchHHHHHHHHHHHHHHhc--------CCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEEE
Confidence 55321 112223333332222111 123499999999997 23445677777653 355666
Q ss_pred EecCc----ccccccccCCceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHHH
Q psy12150 173 ICNYV----SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ----ESVMCDFKALETLVETSGG------DMRRAITC 238 (456)
Q Consensus 173 ~~~~~----~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~----~~~~i~~~~l~~L~~~s~g------dlr~~~~~ 238 (456)
+++.. ..+.+++.+|+..+.|++|+.++...+++..+.. .++.++++++..++..+.| -+..++..
T Consensus 305 at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~l 384 (854)
T 1qvr_A 305 ATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDL 384 (854)
T ss_dssp EECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHH
T ss_pred ecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHH
Confidence 66643 2467899999999999999999999999877653 5788999999999988743 37788888
Q ss_pred HHHHHHhh
Q psy12150 239 LQSCARLK 246 (456)
Q Consensus 239 L~~~~~~~ 246 (456)
++.++...
T Consensus 385 ldea~a~~ 392 (854)
T 1qvr_A 385 IDEAAARL 392 (854)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776654
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.65 E-value=2.6e-15 Score=162.75 Aligned_cols=223 Identities=15% Similarity=0.117 Sum_probs=157.4
Q ss_pred CCCCCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCcc-----ccceEEe
Q psy12150 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY-----RERILEL 102 (456)
Q Consensus 28 ~~~~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~-----~~~~~e~ 102 (456)
......+|.++++|.+|++++|++..++.+.+.+......+++|+||||||||++++.+++.+..... ...++.+
T Consensus 169 l~~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 169 LENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp CCSSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred HHHHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 35677899999999999999999999999999998877777999999999999999999998743221 2234444
Q ss_pred eCCCCc----ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCcc---------HHHHHHHHHHHHhccCcce
Q psy12150 103 NASDDR----GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT---------HAAQAALRRTMEKETKSTR 169 (456)
Q Consensus 103 n~~~~~----~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~---------~~~~~~Ll~~le~~~~~~~ 169 (456)
+..... ..+...+.+.......... ...+|||||++.+. .+..+.|..++++ ..+.
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~---------~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~ 317 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQD---------TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIR 317 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSS---------SCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhc---------CCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeE
Confidence 433211 1122333333333322111 23499999999982 2334444455543 3456
Q ss_pred EEEEecCc-----ccccccccCCceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHH
Q psy12150 170 FCLICNYV-----SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ----ESVMCDFKALETLVETSGG------DMRR 234 (456)
Q Consensus 170 lIl~~~~~-----~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~----~~~~i~~~~l~~L~~~s~g------dlr~ 234 (456)
+|.+++.. ....+++.+|+..+.|.+|+.++..+++...+.. .++.++++++..++..+.| .+..
T Consensus 318 ~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~ 397 (758)
T 1r6b_X 318 VIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_dssp EEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHH
T ss_pred EEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchH
Confidence 66777642 2456789999999999999999999999887765 6788999999999987654 3456
Q ss_pred HHHHHHHHHHhh-------CCCCCCHHHHHHHhC
Q psy12150 235 AITCLQSCARLK-------GGEGIVNEDVLEVTG 261 (456)
Q Consensus 235 ~~~~L~~~~~~~-------~~~~It~~~v~~~~~ 261 (456)
++..++.++... ....|+.+++.+++.
T Consensus 398 ~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~ 431 (758)
T 1r6b_X 398 AIDVIDEAGARARLMPVSKRKKTVNVADIESVVA 431 (758)
T ss_dssp HHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccCCccCHHHHHHHHH
Confidence 777776665432 245799999987753
No 59
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.65 E-value=3.1e-17 Score=155.41 Aligned_cols=208 Identities=17% Similarity=0.171 Sum_probs=139.0
Q ss_pred ccCCCCcccccccHHHHHHHHHHHh-----------cCCCC-eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCC
Q psy12150 38 KYRPKTIDDVIEQQEVVSVLKKCLS-----------GADLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (456)
Q Consensus 38 ky~P~~~~~ivg~~~~~~~l~~~l~-----------~~~~~-~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~ 105 (456)
++.+.+|++++|++..++.+.+.+. +...+ +++|+||||||||++++++++.+.. +++.++++
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~v~~~ 78 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV-----PFFSMGGS 78 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC-----CCCCCCSC
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----CEEEechH
Confidence 4567789999999999888887764 22333 4999999999999999999998754 33444444
Q ss_pred CCcC------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHH---------------HHHHHHHHHhc
Q psy12150 106 DDRG------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA---------------QAALRRTMEKE 164 (456)
Q Consensus 106 ~~~~------~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~---------------~~~Ll~~le~~ 164 (456)
+... ...+...+...... ...+|||||+|.+.... +..|+..++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~a~~~-------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 145 (268)
T 2r62_A 79 SFIEMFVGLGASRVRDLFETAKKQ-------------APSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF 145 (268)
T ss_dssp TTTTSCSSSCSSSSSTTHHHHHHS-------------CSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCS
T ss_pred HHHHhhcchHHHHHHHHHHHHHhc-------------CCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCc
Confidence 3110 01111111111111 12399999999986532 33455555543
Q ss_pred c---CcceEEEEecCcccccccccC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Q psy12150 165 T---KSTRFCLICNYVSCIIQPLTS--RC-SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAIT 237 (456)
Q Consensus 165 ~---~~~~lIl~~~~~~kl~~~l~~--r~-~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g-dlr~~~~ 237 (456)
. ..+++|.++|.+..+.+++.+ |+ ..+.|++|+.++..++++..++..+.. ++..++.++..+.| ..|.+.+
T Consensus 146 ~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~~ 224 (268)
T 2r62_A 146 GSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLAN 224 (268)
T ss_dssp SCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHHH
T ss_pred ccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHHH
Confidence 2 236677777878778888887 55 378999999999999999887654322 23335667777766 4567777
Q ss_pred HHHHHHHhh---CCCCCCHHHHHHHhCCCC
Q psy12150 238 CLQSCARLK---GGEGIVNEDVLEVTGVIP 264 (456)
Q Consensus 238 ~L~~~~~~~---~~~~It~~~v~~~~~~~~ 264 (456)
.++.++..+ ++..|+.+++.+++....
T Consensus 225 l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 254 (268)
T 2r62_A 225 IINEAALLAGRNNQKEVRQQHLKEAVERGI 254 (268)
T ss_dssp HHHHHHHTTSSSCCCSCCHHHHHTSCTTCC
T ss_pred HHHHHHHHHHHhccCCcCHHHHHHHHHHHh
Confidence 787777665 356899999998876543
No 60
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.64 E-value=2.7e-15 Score=153.17 Aligned_cols=213 Identities=21% Similarity=0.202 Sum_probs=146.2
Q ss_pred CCcchhccCCCCcccccccHHHHHHHHHHHhc-----------CCCC-eEEEECCCCCcHHHHHHHHHHHhcCCccccce
Q psy12150 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG-----------ADLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERI 99 (456)
Q Consensus 32 ~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~-----------~~~~-~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~ 99 (456)
...|.+. .+.+|++++|+++.+..+++.+.. ...+ +++|+||||||||+++++++..+. ..+
T Consensus 19 ~~~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~-----~~~ 92 (499)
T 2dhr_A 19 ARVLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPF 92 (499)
T ss_dssp CEEECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CCE
T ss_pred ceeeccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCE
Confidence 3455555 677999999999998887766531 1223 499999999999999999999864 357
Q ss_pred EEeeCCCCcC--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH--------------HHHHHHHHHHHh
Q psy12150 100 LELNASDDRG--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------------AAQAALRRTMEK 163 (456)
Q Consensus 100 ~e~n~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~--------------~~~~~Ll~~le~ 163 (456)
+.+++++... .......+....+... ...|+ ++||||+|.+.. ...+.|+..|+.
T Consensus 93 i~i~g~~~~~~~~g~~~~~v~~lfq~a~-----~~~p~----il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 93 ITASGSDFVEMFVGVGAARVRDLFETAK-----RHAPC----IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp EEEEGGGGTSSCTTHHHHHHHHHTTTSS-----SSSSC----EEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred EEEehhHHHHhhhhhHHHHHHHHHHHHH-----hcCCC----EEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 7777765321 1222223333222211 11223 999999987742 123445555553
Q ss_pred cc--CcceEEEEecCcccccccccCCce---EEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCCCH-HHHH
Q psy12150 164 ET--KSTRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKA-LETLVETSGGDM-RRAI 236 (456)
Q Consensus 164 ~~--~~~~lIl~~~~~~kl~~~l~~r~~---~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~-l~~L~~~s~gdl-r~~~ 236 (456)
.. ..++++.++|.+..+.+++.+++. .+.++.|+.++..++++..++ +..+++++ +..++..+.|+. +.+.
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t~G~~gadL~ 241 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLE 241 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTSCSCCHHHHH
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhcCCCCHHHHH
Confidence 32 345566667777778888888543 899999999999999887654 44555443 788999999988 8898
Q ss_pred HHHHHHHHhh---CCCCCCHHHHHHHhC
Q psy12150 237 TCLQSCARLK---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 237 ~~L~~~~~~~---~~~~It~~~v~~~~~ 261 (456)
+.++.++.++ +...|+.+++.+++.
T Consensus 242 ~lv~~Aa~~A~~~~~~~It~~dl~~al~ 269 (499)
T 2dhr_A 242 NLLNEAALLAAREGRRKITMKDLEEAAD 269 (499)
T ss_dssp HHHHHHHHHHTTTCCSSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHH
Confidence 9998887766 245799999887664
No 61
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.63 E-value=1.7e-14 Score=135.46 Aligned_cols=209 Identities=19% Similarity=0.150 Sum_probs=137.6
Q ss_pred hhccCCCCcccccccHHHHHHHHHHHhc-----------CCC-CeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEee
Q psy12150 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSG-----------ADL-PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELN 103 (456)
Q Consensus 36 ~eky~P~~~~~ivg~~~~~~~l~~~l~~-----------~~~-~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n 103 (456)
...+.+.+|++++|.+..+..+++.... ... ++++|+||+|+|||+++++++..+.. .++.++
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~-----~~i~~~ 81 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITAS 81 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEE
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEEee
Confidence 3455567899999999888777655421 122 34999999999999999999998642 455555
Q ss_pred CCCCc--ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH--------------HHHHHHHHHHHhcc--
Q psy12150 104 ASDDR--GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------------AAQAALRRTMEKET-- 165 (456)
Q Consensus 104 ~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~--------------~~~~~Ll~~le~~~-- 165 (456)
+.+.. ........+....+..... ...++++||++.+.. ...+.++..++...
T Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~---------~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 82 GSDFVEMFVGVGAARVRDLFETAKRH---------APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp HHHHHHSCTTHHHHHHHHHHHHHTTS---------SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhc---------CCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC
Confidence 43210 0111122233333332111 124999999987631 12334555555332
Q ss_pred CcceEEEEecCcccccccccCC--ce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCCCH-HHHHHHHH
Q psy12150 166 KSTRFCLICNYVSCIIQPLTSR--CS-KFRFKPLAENTMLTRLQYICEQESVMCDFKA-LETLVETSGGDM-RRAITCLQ 240 (456)
Q Consensus 166 ~~~~lIl~~~~~~kl~~~l~~r--~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~-l~~L~~~s~gdl-r~~~~~L~ 240 (456)
...+++.+++.+..+.+++.++ +. .+.++.|+.++..++++..++ +..++++. +..++..+.|+. +.+.+.++
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~~~~ 230 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLN 230 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 2345556667788888888874 43 789999999999999987764 34455443 788999999876 78888888
Q ss_pred HHHHhh---CCCCCCHHHHHHHh
Q psy12150 241 SCARLK---GGEGIVNEDVLEVT 260 (456)
Q Consensus 241 ~~~~~~---~~~~It~~~v~~~~ 260 (456)
.++.++ +...|+.+++.+++
T Consensus 231 ~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 231 EAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHhcCCCcCHHHHHHHh
Confidence 776655 34679999998765
No 62
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.62 E-value=1.4e-15 Score=164.65 Aligned_cols=201 Identities=15% Similarity=0.176 Sum_probs=140.0
Q ss_pred CCCCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCc-----cccceEEee
Q psy12150 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-----YRERILELN 103 (456)
Q Consensus 29 ~~~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~-----~~~~~~e~n 103 (456)
.....+|.++++|..+++++|++..++.+...+.....+++||+||||||||++++++++.+.... ....++.++
T Consensus 164 ~~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 164 DSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp HSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred HHHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 456789999999999999999999999999999988778899999999999999999999984422 123455555
Q ss_pred CCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcc-----
Q psy12150 104 ASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS----- 178 (456)
Q Consensus 104 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~----- 178 (456)
+.. ...+.....+.......... ...+|||| ...+.++.|+..+++ ..+++|.++|...
T Consensus 244 ~g~-~~~G~~e~~l~~~~~~~~~~---------~~~iLfiD----~~~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~ 307 (758)
T 3pxi_A 244 MGT-KYRGEFEDRLKKVMDEIRQA---------GNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDEYRKYI 307 (758)
T ss_dssp ----------CTTHHHHHHHHHTC---------CCCEEEEC----C--------CCCTTS--SSCEEEEECCTTTTHHHH
T ss_pred ccc-cccchHHHHHHHHHHHHHhc---------CCEEEEEc----CchhHHHHHHHHHhc--CCEEEEeCCChHHHHHHh
Confidence 511 11111111222222211111 22399999 334566777777774 3467777777654
Q ss_pred cccccccCCceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHHHHHHHHHh
Q psy12150 179 CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ----ESVMCDFKALETLVETSGG------DMRRAITCLQSCARL 245 (456)
Q Consensus 179 kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~~----~~~~i~~~~l~~L~~~s~g------dlr~~~~~L~~~~~~ 245 (456)
.+.+++.+||..+.|++|+.+++..+++..+.. .++.++++++..++..+.+ .++.++..++.++..
T Consensus 308 ~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~ 384 (758)
T 3pxi_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSK 384 (758)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHH
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHH
Confidence 578999999999999999999999999977765 6788999999999887643 356788888776554
No 63
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.62 E-value=2.2e-15 Score=156.56 Aligned_cols=205 Identities=17% Similarity=0.207 Sum_probs=139.5
Q ss_pred cccccccHHHHHHHHHHHh------cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHH---
Q psy12150 44 IDDVIEQQEVVSVLKKCLS------GADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIR--- 114 (456)
Q Consensus 44 ~~~ivg~~~~~~~l~~~l~------~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~--- 114 (456)
.++++|.+.+...+...+. ....++++|+||||||||+++++++..+.. .+..+++........+.
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~-----~~~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR-----KFVRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC-----EEEEECCCC-----------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC-----CeEEEEecccchhhhhhhHH
Confidence 4568999999888766542 122335999999999999999999998743 45555554422211111
Q ss_pred --------HHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHH----HHHHHHHHHhcc---------------Cc
Q psy12150 115 --------DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA----QAALRRTMEKET---------------KS 167 (456)
Q Consensus 115 --------~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~----~~~Ll~~le~~~---------------~~ 167 (456)
..+........ ....++|+||++.+..+. ++.|++.|+... ..
T Consensus 155 ~~~ig~~~~~~~~~~~~a~----------~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~ 224 (543)
T 3m6a_A 155 RTYVGAMPGRIIQGMKKAG----------KLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSK 224 (543)
T ss_dssp ---------CHHHHHHTTC----------SSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSS
T ss_pred HHHhccCchHHHHHHHHhh----------ccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccc
Confidence 11111111110 123399999999998763 477888776422 45
Q ss_pred ceEEEEecCcccccccccCCceEEEecCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHHHHHHHHc--CCCHHHH
Q psy12150 168 TRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE-----QE-----SVMCDFKALETLVETS--GGDMRRA 235 (456)
Q Consensus 168 ~~lIl~~~~~~kl~~~l~~r~~~i~f~~~~~~el~~~l~~~~~-----~~-----~~~i~~~~l~~L~~~s--~gdlr~~ 235 (456)
+++|+++|....+.++|++|+..+.|++|+.++...++...+. .. ++.++++++..++... +|++|.+
T Consensus 225 v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L 304 (543)
T 3m6a_A 225 VLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSL 304 (543)
T ss_dssp CEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHH
T ss_pred eEEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHH
Confidence 6788888999999999999999999999999999998887652 22 4567999999988744 3799999
Q ss_pred HHHHHHHHHhh---------CCCCCCHHHHHHHhCCC
Q psy12150 236 ITCLQSCARLK---------GGEGIVNEDVLEVTGVI 263 (456)
Q Consensus 236 ~~~L~~~~~~~---------~~~~It~~~v~~~~~~~ 263 (456)
.+.++.++..+ +...|+.+++.++++..
T Consensus 305 ~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 305 ERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred HHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 88887765543 12358888998888755
No 64
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.60 E-value=1.1e-15 Score=163.17 Aligned_cols=187 Identities=19% Similarity=0.234 Sum_probs=128.6
Q ss_pred CCcccccccHHHHHHHHHHHh------------cCCCC-eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC-
Q psy12150 42 KTIDDVIEQQEVVSVLKKCLS------------GADLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD- 107 (456)
Q Consensus 42 ~~~~~ivg~~~~~~~l~~~l~------------~~~~~-~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~- 107 (456)
-+|+++.|.+..++.|++.+. +..+| ++|||||||||||++|++++++++. .++.+++++.
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~-----~~~~v~~~~l~ 275 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPEIM 275 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC-----EEEEEEHHHHH
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----eEEEEEhHHhh
Confidence 589999999999998888763 11233 3999999999999999999998743 5777776542
Q ss_pred -cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH-----------HHHHHHHHHHhc--cCcceEEEE
Q psy12150 108 -RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA-----------AQAALRRTMEKE--TKSTRFCLI 173 (456)
Q Consensus 108 -~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~-----------~~~~Ll~~le~~--~~~~~lIl~ 173 (456)
...+.....+......+... .|+ ||||||+|.+.+. ..+.|+..|+.. ...+++|.+
T Consensus 276 sk~~gese~~lr~lF~~A~~~-----~Ps----IIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaa 346 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKN-----APA----IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAA 346 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTS-----CSE----EEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEE
T ss_pred cccchHHHHHHHHHHHHHHHc-----CCe----EEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEe
Confidence 12233334444444443221 233 9999999998532 245566666543 235677888
Q ss_pred ecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHHHHHHH
Q psy12150 174 CNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDM-RRAITCLQSCA 243 (456)
Q Consensus 174 ~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdl-r~~~~~L~~~~ 243 (456)
||.++.+.+++++ |+. .++++.|+.++..++++..++..... ++..+..|+..+.|.. ..+.+.+..++
T Consensus 347 TN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~GfsgaDL~~Lv~eA~ 419 (806)
T 3cf2_A 347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAA 419 (806)
T ss_dssp CSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred cCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 8999999999988 665 89999999999999998776543221 2334778899887743 33334444433
No 65
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.60 E-value=6.8e-14 Score=140.43 Aligned_cols=223 Identities=19% Similarity=0.243 Sum_probs=144.7
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHH-h----c--CCCCeEEE--ECCCCCcHHHHHHHHHHHhcCC----ccccce
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCL-S----G--ADLPHFLF--YGPPGTGKTSTMIAACHQLFGD----MYRERI 99 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l-~----~--~~~~~~Ll--~G~~G~GKT~~a~~l~~~l~~~----~~~~~~ 99 (456)
.++...|.| +.++|++..++.+..++ . + .....++| +||+|+|||++++.+++.+... .....+
T Consensus 13 ~~~~~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~ 89 (412)
T 1w5s_A 13 RVFDENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQ 89 (412)
T ss_dssp GGGSTTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred hhcCCccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeE
Confidence 345556777 56899999998888887 4 2 23445899 9999999999999999886431 012356
Q ss_pred EEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCC--------------CCCCcEEEEEcCCCCccH------HHHHHHHH
Q psy12150 100 LELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK--------------PCPPFKIVILDEADSMTH------AAQAALRR 159 (456)
Q Consensus 100 ~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~--------------~~~~~~iviIDE~d~l~~------~~~~~Ll~ 159 (456)
+.+++........+...+........ ...+. ....+.+|||||++.+.. +....|.+
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~ 166 (412)
T 1w5s_A 90 AYVNAFNAPNLYTILSLIVRQTGYPI---QVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLR 166 (412)
T ss_dssp EEEEGGGCCSHHHHHHHHHHHHTCCC---CCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCC---CCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHH
Confidence 77776433333222211111000000 00000 001344999999999853 55666677
Q ss_pred HHHhcc-----CcceEEEEecCcc---ccc---ccccCCc-eEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHH
Q psy12150 160 TMEKET-----KSTRFCLICNYVS---CII---QPLTSRC-SKFRFKPLAENTMLTRLQYICEQES--VMCDFKALETLV 225 (456)
Q Consensus 160 ~le~~~-----~~~~lIl~~~~~~---kl~---~~l~~r~-~~i~f~~~~~~el~~~l~~~~~~~~--~~i~~~~l~~L~ 225 (456)
.+.+.+ ..+.+|++++... .+. +.+.++. ..++|++++.+++.+++...+...+ ..+++++++.++
T Consensus 167 ~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~ 246 (412)
T 1w5s_A 167 VHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELIS 246 (412)
T ss_dssp HHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHH
T ss_pred HHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHH
Confidence 776543 4566777775432 222 3344443 2499999999999999998876543 358899999999
Q ss_pred HHcC------CCHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhC
Q psy12150 226 ETSG------GDMRRAITCLQSCARLK---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 226 ~~s~------gdlr~~~~~L~~~~~~~---~~~~It~~~v~~~~~ 261 (456)
+.++ |++|.+.+.++.+...+ +...|+.+++..+..
T Consensus 247 ~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~ 291 (412)
T 1w5s_A 247 DVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS 291 (412)
T ss_dssp HHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 9999 99999999998765543 345688888776553
No 66
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.60 E-value=1.8e-15 Score=134.45 Aligned_cols=158 Identities=14% Similarity=0.161 Sum_probs=109.8
Q ss_pred CCCCcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCc-----cccceEEeeC
Q psy12150 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-----YRERILELNA 104 (456)
Q Consensus 30 ~~~~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~-----~~~~~~e~n~ 104 (456)
....+|.++|+|.+|++++|++..+..+.+++..+...+++|+||+|+|||++++.+++.+.... ....++.+++
T Consensus 7 ~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 7 KYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp TTEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred HHHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 45678999999999999999999999999999887777799999999999999999999875421 1224555544
Q ss_pred CCC----cChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCcc---------HHHHHHHHHHHHhccCcceEE
Q psy12150 105 SDD----RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT---------HAAQAALRRTMEKETKSTRFC 171 (456)
Q Consensus 105 ~~~----~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~---------~~~~~~Ll~~le~~~~~~~lI 171 (456)
... .........+..+....... ....+|||||++.+. .+..+.|...++. ..+++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~ii 156 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEVQDA--------EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GELRCI 156 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHT--------TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCSCEE
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhc--------CCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCeeEE
Confidence 321 11122222222222221111 123499999999986 3345566666664 346677
Q ss_pred EEecCcc-----cccccccCCceEEEecCCC
Q psy12150 172 LICNYVS-----CIIQPLTSRCSKFRFKPLA 197 (456)
Q Consensus 172 l~~~~~~-----kl~~~l~~r~~~i~f~~~~ 197 (456)
++++... .+.+++.+|+..+.+.+|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred EecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 7777543 5778899999999998875
No 67
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.60 E-value=1.6e-14 Score=137.15 Aligned_cols=182 Identities=13% Similarity=0.186 Sum_probs=117.9
Q ss_pred cccccHHHHHHHH-------HHHh---cCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCc---ChHH
Q psy12150 46 DVIEQQEVVSVLK-------KCLS---GADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR---GIQV 112 (456)
Q Consensus 46 ~ivg~~~~~~~l~-------~~l~---~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~---~~~~ 112 (456)
.++|++..++.+. +.+. .....+++|+||||||||++|+++++.+.. .++.+++.+.. ....
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~-----~~~~i~~~~~~~g~~~~~ 108 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF-----PFIKICSPDKMIGFSETA 108 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC-----SEEEEECGGGCTTCCHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEeCHHHhcCCchHH
Confidence 4566655543333 3443 223334999999999999999999998643 56667665411 1111
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCc----------cHHHHHHHHHHHHh---ccCcceEEEEecCccc
Q psy12150 113 IRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM----------THAAQAALRRTMEK---ETKSTRFCLICNYVSC 179 (456)
Q Consensus 113 i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l----------~~~~~~~Ll~~le~---~~~~~~lIl~~~~~~k 179 (456)
....+......... ....+|||||+|.+ ....++.|...++. ....+++|.++|.+..
T Consensus 109 ~~~~~~~~~~~~~~---------~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~ 179 (272)
T 1d2n_A 109 KCQAMKKIFDDAYK---------SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDV 179 (272)
T ss_dssp HHHHHHHHHHHHHT---------SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHH
T ss_pred HHHHHHHHHHHHHh---------cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhh
Confidence 11222222222211 13459999999987 34455666666654 2334556777776665
Q ss_pred ccc-cccCC-ceEEEecCCCH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhh
Q psy12150 180 IIQ-PLTSR-CSKFRFKPLAE-NTMLTRLQYICEQESVMCDFKALETLVETSGG-----DMRRAITCLQSCARLK 246 (456)
Q Consensus 180 l~~-~l~~r-~~~i~f~~~~~-~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g-----dlr~~~~~L~~~~~~~ 246 (456)
+.+ .+.+| +..+++++++. +++..++.. . ..++++++..+++.+.| |+|++++.++.+...+
T Consensus 180 l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~----~-~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~ 249 (272)
T 1d2n_A 180 LQEMEMLNAFSTTIHVPNIATGEQLLEALEL----L-GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD 249 (272)
T ss_dssp HHHTTCTTTSSEEEECCCEEEHHHHHHHHHH----H-TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC
T ss_pred cchhhhhcccceEEcCCCccHHHHHHHHHHh----c-CCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc
Confidence 555 56777 46889988887 666665553 2 25799999999999988 9999999999876643
No 68
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.60 E-value=8.3e-15 Score=145.70 Aligned_cols=207 Identities=18% Similarity=0.196 Sum_probs=135.5
Q ss_pred cccccHHHHHHHHHHHh----c-------------------------C-CCCeEEEECCCCCcHHHHHHHHHHHhcCCcc
Q psy12150 46 DVIEQQEVVSVLKKCLS----G-------------------------A-DLPHFLFYGPPGTGKTSTMIAACHQLFGDMY 95 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~----~-------------------------~-~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~ 95 (456)
.++|++.+++.+..++. . . ...+++|+||||||||++++++++.+..
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~--- 98 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI--- 98 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC---
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCC---
Confidence 47999999988887761 1 1 1235999999999999999999998743
Q ss_pred ccceEEeeCCCCcChH----HHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH--------------HHHHH
Q psy12150 96 RERILELNASDDRGIQ----VIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--------------AQAAL 157 (456)
Q Consensus 96 ~~~~~e~n~~~~~~~~----~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~--------------~~~~L 157 (456)
+++.+++......+ .....+..+......... . ....+|||||++.+... .++.|
T Consensus 99 --~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~----~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~L 171 (376)
T 1um8_A 99 --PIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ-K----AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQAL 171 (376)
T ss_dssp --CEEEEEGGGCC--------CTHHHHHHHHHTTTCHH-H----HTTSEEEEETGGGC--------------CHHHHHHH
T ss_pred --CEEEecchhhhhcCcCCccHHHHHHHHHhhccchhh-h----cCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHH
Confidence 46666665432111 111222222111100000 0 02339999999999887 88999
Q ss_pred HHHHHhcc---------------------CcceEEEEecC----------------------------------------
Q psy12150 158 RRTMEKET---------------------KSTRFCLICNY---------------------------------------- 176 (456)
Q Consensus 158 l~~le~~~---------------------~~~~lIl~~~~---------------------------------------- 176 (456)
++.|+... .++++|++++.
T Consensus 172 l~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l 251 (376)
T 1um8_A 172 LKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDL 251 (376)
T ss_dssp HHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHH
T ss_pred HHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHH
Confidence 99998541 33466666541
Q ss_pred -cccccccccCCc-eEEEecCCCHHHHHHHHHH----HHH-------H--cCCCCCHHHHHHHHHHcC---CCHHHHHHH
Q psy12150 177 -VSCIIQPLTSRC-SKFRFKPLAENTMLTRLQY----ICE-------Q--ESVMCDFKALETLVETSG---GDMRRAITC 238 (456)
Q Consensus 177 -~~kl~~~l~~r~-~~i~f~~~~~~el~~~l~~----~~~-------~--~~~~i~~~~l~~L~~~s~---gdlr~~~~~ 238 (456)
...+.++|.+|+ ..+.|++++.+++..++.. .++ . .++.+++++++.|++.+. |++|.+.+.
T Consensus 252 ~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~ 331 (376)
T 1um8_A 252 VTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAI 331 (376)
T ss_dssp HHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHH
T ss_pred hhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHH
Confidence 112456788888 6899999999999998862 211 1 245689999999999864 999999999
Q ss_pred HHHHHHhh-----C--CC--CCCHHHHHHHhCC
Q psy12150 239 LQSCARLK-----G--GE--GIVNEDVLEVTGV 262 (456)
Q Consensus 239 L~~~~~~~-----~--~~--~It~~~v~~~~~~ 262 (456)
++.++... . .+ .||.++|.+....
T Consensus 332 le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~ 364 (376)
T 1um8_A 332 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEP 364 (376)
T ss_dssp HHHHHHHHHHTGGGGTTSEEEECHHHHTTSSCC
T ss_pred HHHHHHHHHhhccCCCCCEEEEeHHHhcCCCCc
Confidence 99876532 1 11 4888888775543
No 69
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.59 E-value=6.1e-14 Score=133.51 Aligned_cols=205 Identities=20% Similarity=0.163 Sum_probs=134.9
Q ss_pred CCCCcccccccHHHHHHHHHHHhc-----------CCC-CeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC
Q psy12150 40 RPKTIDDVIEQQEVVSVLKKCLSG-----------ADL-PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (456)
Q Consensus 40 ~P~~~~~ivg~~~~~~~l~~~l~~-----------~~~-~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~ 107 (456)
.+.+|++++|.+..+..+.+.... ... ++++|+||+|+|||+++++++..+.. .++.+++.+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~-----~~i~~~~~~~ 109 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDF 109 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC-----CEEEecHHHH
Confidence 567899999999888777655431 122 24999999999999999999998642 4566655331
Q ss_pred c--ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH-----------HHH---HHHHHHHHhcc--Ccce
Q psy12150 108 R--GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQ---AALRRTMEKET--KSTR 169 (456)
Q Consensus 108 ~--~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~-----------~~~---~~Ll~~le~~~--~~~~ 169 (456)
. ........+....+..... ...++++||++.+.. ... ..++..+.... ...+
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~~~---------~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i 180 (278)
T 1iy2_A 110 VEMFVGVGAARVRDLFETAKRH---------APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIV 180 (278)
T ss_dssp HHSTTTHHHHHHHHHHHHHHTS---------CSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEE
T ss_pred HHHHhhHHHHHHHHHHHHHHhc---------CCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEE
Confidence 0 0111122233333322111 123999999986631 112 23333343322 2345
Q ss_pred EEEEecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCCCH-HHHHHHHHHHHH
Q psy12150 170 FCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFK-ALETLVETSGGDM-RRAITCLQSCAR 244 (456)
Q Consensus 170 lIl~~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~-~l~~L~~~s~gdl-r~~~~~L~~~~~ 244 (456)
++.+++.+..+.+++.+ |+. .+.|++|+.++..++++..++ +..++++ .+..++..+.|+. +.+.+.++.++.
T Consensus 181 ~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~ 258 (278)
T 1iy2_A 181 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAAL 258 (278)
T ss_dssp EEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred EEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc--cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 55667778788888877 443 799999999999999987765 3455544 3788999999977 678888887766
Q ss_pred hh---CCCCCCHHHHHHHh
Q psy12150 245 LK---GGEGIVNEDVLEVT 260 (456)
Q Consensus 245 ~~---~~~~It~~~v~~~~ 260 (456)
++ +...|+.+++.+++
T Consensus 259 ~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 259 LAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHTTCCSBCHHHHHHHT
T ss_pred HHHHhCCCCcCHHHHHHHh
Confidence 55 34679999998765
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.59 E-value=7.8e-15 Score=158.90 Aligned_cols=186 Identities=20% Similarity=0.292 Sum_probs=136.2
Q ss_pred ccccccHHHHHHHHHHHhcCC--------CC-eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHH-H
Q psy12150 45 DDVIEQQEVVSVLKKCLSGAD--------LP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVI-R 114 (456)
Q Consensus 45 ~~ivg~~~~~~~l~~~l~~~~--------~~-~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i-~ 114 (456)
+.++|++..+..+...+.... +. +++|+||||||||++|+++++.+.... .+++.+|++........ .
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~--~~~i~i~~s~~~~~~~~~~ 568 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDE--ESMIRIDMSEYMEKHSTSG 568 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCT--TCEEEEEGGGGCSSCCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC--cceEEEechhccccccccc
Confidence 468999999988888875321 11 499999999999999999999985533 36788888763321110 1
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhc-----------cCcceEEEEecCccc----
Q psy12150 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE-----------TKSTRFCLICNYVSC---- 179 (456)
Q Consensus 115 ~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~-----------~~~~~lIl~~~~~~k---- 179 (456)
..+....... ++.+|||||++.+..+.++.|++.|++. ..++++|+++|....
T Consensus 569 ~~l~~~~~~~------------~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~ 636 (758)
T 3pxi_A 569 GQLTEKVRRK------------PYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDK 636 (758)
T ss_dssp --CHHHHHHC------------SSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHH
T ss_pred chhhHHHHhC------------CCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHH
Confidence 1111111111 2349999999999999999999999873 346789999985322
Q ss_pred --------ccccccCCc-eEEEecCCCHHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHH---cCCCHHHHHHH
Q psy12150 180 --------IIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQ---------ESVMCDFKALETLVET---SGGDMRRAITC 238 (456)
Q Consensus 180 --------l~~~l~~r~-~~i~f~~~~~~el~~~l~~~~~~---------~~~~i~~~~l~~L~~~---s~gdlr~~~~~ 238 (456)
+.+.|.+|+ ..+.|+|++.+++..++...+.. ..+.+++++++.|++. .+|++|.+.+.
T Consensus 637 ~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~ 716 (758)
T 3pxi_A 637 VMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRA 716 (758)
T ss_dssp HHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHH
T ss_pred HHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHH
Confidence 667899999 69999999999999998877654 2356899999999875 46899999998
Q ss_pred HHHHHH
Q psy12150 239 LQSCAR 244 (456)
Q Consensus 239 L~~~~~ 244 (456)
++++..
T Consensus 717 i~~~v~ 722 (758)
T 3pxi_A 717 IQKHVE 722 (758)
T ss_dssp HHHHTH
T ss_pred HHHHHH
Confidence 887543
No 71
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.58 E-value=1.3e-14 Score=152.94 Aligned_cols=225 Identities=20% Similarity=0.220 Sum_probs=152.9
Q ss_pred CcchhccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCc----
Q psy12150 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR---- 108 (456)
Q Consensus 33 ~~w~eky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~---- 108 (456)
.....+|+|.+|++++|++.+++.+...+..+. +++|+||+|||||+++++++..+....+. .+.+......
T Consensus 29 ~~~~~~~rp~~l~~i~G~~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~~~~~~--~~~~~~~~~~~~~p 104 (604)
T 3k1j_A 29 TTEEIEVPEKLIDQVIGQEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLPTETLE--DILVFPNPEDENMP 104 (604)
T ss_dssp BGGGSCCCSSHHHHCCSCHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSCCSSCE--EEEEECCTTCTTSC
T ss_pred ccCcccccccccceEECchhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccCCcccCC--eEEEeCCcccccCC
Confidence 345679999999999999999999999999873 69999999999999999999987543211 1112111100
Q ss_pred --------ChHHHHHHHHHHHHh-----------------------------------------hccC----------CC
Q psy12150 109 --------GIQVIRDKVKTFAQQ-----------------------------------------TASG----------FN 129 (456)
Q Consensus 109 --------~~~~i~~~l~~~~~~-----------------------------------------~~~~----------~~ 129 (456)
....+.+........ ..++ ..
T Consensus 105 ~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~ 184 (604)
T 3k1j_A 105 RIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGL 184 (604)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----C
T ss_pred cEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCc
Confidence 011111111111000 0000 00
Q ss_pred CCC-----CCC----CCcEEEEEcCCCCccHHHHHHHHHHHHhc---------------------cCcceEEEEecCc--
Q psy12150 130 QDG-----KPC----PPFKIVILDEADSMTHAAQAALRRTMEKE---------------------TKSTRFCLICNYV-- 177 (456)
Q Consensus 130 ~~~-----~~~----~~~~iviIDE~d~l~~~~~~~Ll~~le~~---------------------~~~~~lIl~~~~~-- 177 (456)
..+ .+. ++..++||||++.|.+..++.|++.|++. +..+++|+++|..
T Consensus 185 ~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~ 264 (604)
T 3k1j_A 185 GTPAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTV 264 (604)
T ss_dssp CCCGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHH
T ss_pred cccccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHH
Confidence 000 000 23459999999999999999999999843 1346688888865
Q ss_pred ccccccccCCce----EEEecCC---CHHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHc---CC-------CHHHH
Q psy12150 178 SCIIQPLTSRCS----KFRFKPL---AENTMLTRLQYICEQE-----SVMCDFKALETLVETS---GG-------DMRRA 235 (456)
Q Consensus 178 ~kl~~~l~~r~~----~i~f~~~---~~~el~~~l~~~~~~~-----~~~i~~~~l~~L~~~s---~g-------dlr~~ 235 (456)
..+.++|.+||. .+.|+.. ..+.+..++...++.. ...++++++..|++.+ .| ++|.+
T Consensus 265 ~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l 344 (604)
T 3k1j_A 265 DKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDL 344 (604)
T ss_dssp HHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHH
T ss_pred hhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHH
Confidence 578899999984 5666443 4556677766555432 2578999999999865 55 69999
Q ss_pred HHHHHHHHHhh---CCCCCCHHHHHHHhC
Q psy12150 236 ITCLQSCARLK---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 236 ~~~L~~~~~~~---~~~~It~~~v~~~~~ 261 (456)
.+.++.+..++ +...|+.++|.+++.
T Consensus 345 ~~llr~A~~~A~~~~~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 345 GGIVRAAGDIAVKKGKKYVEREDVIEAVK 373 (604)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccccHHHHHHHHH
Confidence 99998877665 467899999998874
No 72
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.54 E-value=3.5e-14 Score=153.89 Aligned_cols=183 Identities=18% Similarity=0.224 Sum_probs=134.8
Q ss_pred ccccccHHHHHHHHHHHhcC--------CCC-eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcC------
Q psy12150 45 DDVIEQQEVVSVLKKCLSGA--------DLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG------ 109 (456)
Q Consensus 45 ~~ivg~~~~~~~l~~~l~~~--------~~~-~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~------ 109 (456)
+.++|++..+..+...+... ++. +++|+||||||||++++++++.+.. .++.++++....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~-----~~~~i~~s~~~~~~~~~~ 532 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERHTVSR 532 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC-----EEEEEEGGGCSSSSCCSS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC-----CEEEEechhhcchhhHhh
Confidence 35889999998888777532 222 4999999999999999999998832 566666654321
Q ss_pred --------hHH-HHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------Ccce
Q psy12150 110 --------IQV-IRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTR 169 (456)
Q Consensus 110 --------~~~-i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~ 169 (456)
.+. -...+...... .++.+|||||++.+.++.++.|++.|++.. .+++
T Consensus 533 l~g~~~g~~g~~~~~~l~~~~~~------------~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~ 600 (758)
T 1r6b_X 533 LIGAPPGYVGFDQGGLLTDAVIK------------HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_dssp SCCCCSCSHHHHHTTHHHHHHHH------------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEE
T ss_pred hcCCCCCCcCccccchHHHHHHh------------CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeE
Confidence 110 00111222111 134599999999999999999999999642 4577
Q ss_pred EEEEecCcc-------------------------cccccccCCc-eEEEecCCCHHHHHHHHHHHHHHc---------CC
Q psy12150 170 FCLICNYVS-------------------------CIIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQE---------SV 214 (456)
Q Consensus 170 lIl~~~~~~-------------------------kl~~~l~~r~-~~i~f~~~~~~el~~~l~~~~~~~---------~~ 214 (456)
+|+++|... .+.++|.+|+ ..+.|++++.+++..++...+.+. .+
T Consensus 601 iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~ 680 (758)
T 1r6b_X 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSL 680 (758)
T ss_dssp EEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred EEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEE
Confidence 888888532 4567788999 589999999999999998887632 34
Q ss_pred CCCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Q psy12150 215 MCDFKALETLVETS---GGDMRRAITCLQSCAR 244 (456)
Q Consensus 215 ~i~~~~l~~L~~~s---~gdlr~~~~~L~~~~~ 244 (456)
.+++++++.|++.+ +++.|.+.+.++.++.
T Consensus 681 ~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 681 EVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp EECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred EeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 68999999999876 4558888888887654
No 73
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.54 E-value=9.9e-15 Score=159.91 Aligned_cols=187 Identities=18% Similarity=0.268 Sum_probs=138.4
Q ss_pred ccccccHHHHHHHHHHHhcCC--------C-CeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHH
Q psy12150 45 DDVIEQQEVVSVLKKCLSGAD--------L-PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD 115 (456)
Q Consensus 45 ~~ivg~~~~~~~l~~~l~~~~--------~-~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~ 115 (456)
+.++|++..++.+...+...+ + .+++|+||+|||||++++++++.+.... ..++.+|++..........
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~--~~~i~i~~~~~~~~~~~s~ 635 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE--EAMIRIDMTEYMEKHAVSR 635 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG--GGEEEECTTTCCSSGGGGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC--CcEEEEechhccchhHHHH
Confidence 568999999988888875431 2 2499999999999999999999986543 3678888876433211110
Q ss_pred ---------------HHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------Ccce
Q psy12150 116 ---------------KVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTR 169 (456)
Q Consensus 116 ---------------~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~ 169 (456)
.+...... .++.+|||||++.+..+.++.|++.|++.. .+++
T Consensus 636 l~g~~~~~~G~~~~g~l~~~~~~------------~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~i 703 (854)
T 1qvr_A 636 LIGAPPGYVGYEEGGQLTEAVRR------------RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTV 703 (854)
T ss_dssp C--------------CHHHHHHH------------CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEE
T ss_pred HcCCCCCCcCccccchHHHHHHh------------CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeE
Confidence 11111111 134599999999999999999999998753 3567
Q ss_pred EEEEecCc--------------------------ccccccccCCc-eEEEecCCCHHHHHHHHHHHHHH-------c--C
Q psy12150 170 FCLICNYV--------------------------SCIIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQ-------E--S 213 (456)
Q Consensus 170 lIl~~~~~--------------------------~kl~~~l~~r~-~~i~f~~~~~~el~~~l~~~~~~-------~--~ 213 (456)
+|+++|.. ..+.+.|.+|+ ..+.|.|++.+++..++...+.+ . .
T Consensus 704 iI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~ 783 (854)
T 1qvr_A 704 IILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRIS 783 (854)
T ss_dssp EEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred EEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCce
Confidence 88888851 23456688888 58899999999999998877653 1 2
Q ss_pred CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHHh
Q psy12150 214 VMCDFKALETLVETS---GGDMRRAITCLQSCARL 245 (456)
Q Consensus 214 ~~i~~~~l~~L~~~s---~gdlr~~~~~L~~~~~~ 245 (456)
..+++++++.|+..+ +|++|.+.+.++++...
T Consensus 784 ~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~ 818 (854)
T 1qvr_A 784 LELTEAAKDFLAERGYDPVFGARPLRRVIQRELET 818 (854)
T ss_dssp EEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHH
T ss_pred EEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHH
Confidence 468999999999875 59999999999886553
No 74
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.49 E-value=3.1e-13 Score=138.12 Aligned_cols=211 Identities=12% Similarity=0.085 Sum_probs=134.7
Q ss_pred ccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHH--HHHHHH
Q psy12150 45 DDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK--VKTFAQ 122 (456)
Q Consensus 45 ~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~--l~~~~~ 122 (456)
..++|++++++.+...+..+. +++|+||||||||++|+++++.+.... .+...++.. .....+... ......
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l~~~~---~f~~~~~~~-~t~~dL~G~~~~~~~~~ 95 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNAR---AFEYLMTRF-STPEEVFGPLSIQALKD 95 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGBSSCC---EEEEECCTT-CCHHHHHCCBC------
T ss_pred hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHHhhhh---HHHHHHHhc-CCHHHhcCcccHHHHhh
Confidence 357899999999988887663 799999999999999999999874321 233333332 111211110 000000
Q ss_pred hhccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc----------CcceEEEEecCccc---ccccccCCce
Q psy12150 123 QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET----------KSTRFCLICNYVSC---IIQPLTSRCS 189 (456)
Q Consensus 123 ~~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~----------~~~~lIl~~~~~~k---l~~~l~~r~~ 189 (456)
....... ..++.+...++||||++.+.+..++.|+..|++.. +..++|+++|.... ..+++.+|+.
T Consensus 96 ~g~~~~~-~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~ 174 (500)
T 3nbx_X 96 EGRYERL-TSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRML 174 (500)
T ss_dssp ----CBC-CTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCC
T ss_pred chhHHhh-hccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHH
Confidence 0000000 01110123499999999999999999999997531 22345777775322 3457888875
Q ss_pred -EEEecCCCH-HHHHHHHHHHH-----------------------HHcCCCCCHHHHHHHHHHc----------CCCHHH
Q psy12150 190 -KFRFKPLAE-NTMLTRLQYIC-----------------------EQESVMCDFKALETLVETS----------GGDMRR 234 (456)
Q Consensus 190 -~i~f~~~~~-~el~~~l~~~~-----------------------~~~~~~i~~~~l~~L~~~s----------~gdlr~ 234 (456)
.+.+++|+. ++...++.... .-.++.+++++++.+++.. +.+.|.
T Consensus 175 ~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~ 254 (500)
T 3nbx_X 175 IRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRR 254 (500)
T ss_dssp EEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHH
T ss_pred HHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhH
Confidence 588888887 55666665432 1236778999999988765 558898
Q ss_pred HHHHHHHHHHhh---CCCCCCHHHHHHHhCCC
Q psy12150 235 AITCLQSCARLK---GGEGIVNEDVLEVTGVI 263 (456)
Q Consensus 235 ~~~~L~~~~~~~---~~~~It~~~v~~~~~~~ 263 (456)
++..+..+..++ +...|+.+||. ++...
T Consensus 255 ~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~v 285 (500)
T 3nbx_X 255 WKKAIRLLQASAFFSGRSAVAPVDLI-LLKDC 285 (500)
T ss_dssp HHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGT
T ss_pred HHHHHHHHHHHHhhcCCccccchHHH-HHHhh
Confidence 877776654444 67789999998 55443
No 75
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.47 E-value=1.6e-13 Score=135.74 Aligned_cols=205 Identities=18% Similarity=0.198 Sum_probs=132.8
Q ss_pred cccccHHHHHHHHHHHh-------------cC--CCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcCh
Q psy12150 46 DVIEQQEVVSVLKKCLS-------------GA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI 110 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~-------------~~--~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~ 110 (456)
.++|++.+++.+...+. .. ...+++|+||||||||++|+++++.+.. +++.++++.....
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~-----~~~~~~~~~l~~~ 90 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDV-----PFTMADATTLTEA 90 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHHHHTTC
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCC-----CEEEechHHhccc
Confidence 36999999999888872 11 2234999999999999999999998743 5777777653321
Q ss_pred HH----HHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH--------------HHHHHHHHHHhc--------
Q psy12150 111 QV----IRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--------------AQAALRRTMEKE-------- 164 (456)
Q Consensus 111 ~~----i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~--------------~~~~Ll~~le~~-------- 164 (456)
.. ....+..+......... . ....+|||||++.+... .++.|++.|+..
T Consensus 91 ~~~g~~~~~~~~~~~~~~~~~~~-~----~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~ 165 (363)
T 3hws_A 91 GYVGEDVENIIQKLLQKCDYDVQ-K----AQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQG 165 (363)
T ss_dssp HHHHHHHTHHHHHHHHHTTTCHH-H----HHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC--------
T ss_pred ccccccHHHHHHHHHHHhhhhHH-h----cCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCcc
Confidence 11 12222222211100000 0 02239999999988765 789999999821
Q ss_pred -------------cCcceEEEEecCc----------cc-----------------------------------ccccccC
Q psy12150 165 -------------TKSTRFCLICNYV----------SC-----------------------------------IIQPLTS 186 (456)
Q Consensus 165 -------------~~~~~lIl~~~~~----------~k-----------------------------------l~~~l~~ 186 (456)
..+..||++++.. .+ +.+.|.+
T Consensus 166 ~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~ 245 (363)
T 3hws_A 166 GRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG 245 (363)
T ss_dssp --------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT
T ss_pred ccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc
Confidence 1234455555421 11 5677888
Q ss_pred Cce-EEEecCCCHHHHHHHHHH----HH-------HHcC--CCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHHhh---
Q psy12150 187 RCS-KFRFKPLAENTMLTRLQY----IC-------EQES--VMCDFKALETLVET---SGGDMRRAITCLQSCARLK--- 246 (456)
Q Consensus 187 r~~-~i~f~~~~~~el~~~l~~----~~-------~~~~--~~i~~~~l~~L~~~---s~gdlr~~~~~L~~~~~~~--- 246 (456)
|+. .+.|.|++.+++.+++.. .+ ...+ +.+++++++.|+.. .+++.|.+.+.++++....
T Consensus 246 R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 246 RLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred ccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 987 556999999998888775 22 2223 45799999999964 3678899999998876543
Q ss_pred --CC-C----CCCHHHHHHHh
Q psy12150 247 --GG-E----GIVNEDVLEVT 260 (456)
Q Consensus 247 --~~-~----~It~~~v~~~~ 260 (456)
.. . .||.++|++..
T Consensus 326 ~~~~~~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 326 LPSMEDVEKVVIDESVIDGQS 346 (363)
T ss_dssp TTTCCCSEEEECHHHHTTCCS
T ss_pred cccccCCceeEEcHHHHhCcC
Confidence 22 1 36666665544
No 76
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.43 E-value=9.6e-12 Score=117.91 Aligned_cols=211 Identities=17% Similarity=0.173 Sum_probs=127.5
Q ss_pred CCCcccccccHHHHHHHHHHHh------------cCCCC-eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC
Q psy12150 41 PKTIDDVIEQQEVVSVLKKCLS------------GADLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (456)
Q Consensus 41 P~~~~~ivg~~~~~~~l~~~l~------------~~~~~-~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~ 107 (456)
..+|+++.|.+++++.|.+.+. +-.++ +++|+||||||||+++++++..+.. .++.+++.+.
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l 80 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPEL 80 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHH
Confidence 4589999999999988887642 11222 3999999999999999999998643 4677777654
Q ss_pred cC--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH-----------HHHHHHHHHHhcc--CcceEEE
Q psy12150 108 RG--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA-----------AQAALRRTMEKET--KSTRFCL 172 (456)
Q Consensus 108 ~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~-----------~~~~Ll~~le~~~--~~~~lIl 172 (456)
.. .......+....+.+... ...++++||++.+... ..+.++..|.... ...+++.
T Consensus 81 ~~~~~~~~~~~i~~vf~~a~~~---------~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia 151 (274)
T 2x8a_A 81 LNMYVGESERAVRQVFQRAKNS---------APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMA 151 (274)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHT---------CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEE
T ss_pred HhhhhhHHHHHHHHHHHHHHhc---------CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEe
Confidence 22 233333444443332111 1239999999987421 1234444554332 3355666
Q ss_pred EecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHc------CCCHHHHHHHHHH
Q psy12150 173 ICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQE-SVMCD-FKALETLVETS------GGDMRRAITCLQS 241 (456)
Q Consensus 173 ~~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~-~~~i~-~~~l~~L~~~s------~gdlr~~~~~L~~ 241 (456)
++|.++.+.+++.+ |+. .+.++.|+.++..++++..++.. ...++ +..++.++..+ ++|+..+.++...
T Consensus 152 ~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~ 231 (274)
T 2x8a_A 152 ATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASI 231 (274)
T ss_dssp EESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHH
T ss_pred ecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHH
Confidence 77888888888887 665 78999999999999999887542 22222 33356666532 3355444433322
Q ss_pred HHHhh-----------CCCCCCHHHHHHHhCCCCH
Q psy12150 242 CARLK-----------GGEGIVNEDVLEVTGVIPK 265 (456)
Q Consensus 242 ~~~~~-----------~~~~It~~~v~~~~~~~~~ 265 (456)
.+... +...|+.+|+.+++....+
T Consensus 232 ~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 232 CALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp HHHHHHC-----------CCBCHHHHHHHHTTCCC
T ss_pred HHHHHHHhhccccccccCCeecHHHHHHHHHHhcC
Confidence 11110 1236888999888876654
No 77
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.41 E-value=1.9e-12 Score=129.55 Aligned_cols=127 Identities=20% Similarity=0.206 Sum_probs=92.6
Q ss_pred cEEEEEcCCCCccH------------HHHHHHHHHHHhc----------cCcceEEEEe----cCcccccccccCCceE-
Q psy12150 138 FKIVILDEADSMTH------------AAQAALRRTMEKE----------TKSTRFCLIC----NYVSCIIQPLTSRCSK- 190 (456)
Q Consensus 138 ~~iviIDE~d~l~~------------~~~~~Ll~~le~~----------~~~~~lIl~~----~~~~kl~~~l~~r~~~- 190 (456)
..++++||+|.+.. ..|++|++.|+.. ..++.||+++ ..+..+.+.|.+|+.+
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~ 330 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIR 330 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEE
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhccccee
Confidence 44899999998853 2578999999852 3456677776 2445577899999885
Q ss_pred EEecCCCHHHHHHHHHH-----------HHHHcC--CCCCHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhh---
Q psy12150 191 FRFKPLAENTMLTRLQY-----------ICEQES--VMCDFKALETLVET--------SGGDMRRAITCLQSCARLK--- 246 (456)
Q Consensus 191 i~f~~~~~~el~~~l~~-----------~~~~~~--~~i~~~~l~~L~~~--------s~gdlr~~~~~L~~~~~~~--- 246 (456)
+.|++++.+++.+++.. .+..++ +.++++++..|++. -++..|.+.+.+++++...
T Consensus 331 i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~ 410 (444)
T 1g41_A 331 VELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFS 410 (444)
T ss_dssp EECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhh
Confidence 89999999999998831 222234 35899999999985 2577888888888765532
Q ss_pred --C--CC--CCCHHHHHHHhCCCC
Q psy12150 247 --G--GE--GIVNEDVLEVTGVIP 264 (456)
Q Consensus 247 --~--~~--~It~~~v~~~~~~~~ 264 (456)
. ++ .||.+.|...++...
T Consensus 411 ~~~~~~~~~~i~~~~v~~~l~~~~ 434 (444)
T 1g41_A 411 ASDMNGQTVNIDAAYVADALGEVV 434 (444)
T ss_dssp GGGCTTCEEEECHHHHHHHHTTTT
T ss_pred ccccCCCeEEEeHHHHHHhcCccc
Confidence 1 11 478888888777654
No 78
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.40 E-value=1.5e-13 Score=146.80 Aligned_cols=179 Identities=21% Similarity=0.266 Sum_probs=108.0
Q ss_pred CCcccccccHHHHHHHHHHHhc-----------C-CCC-eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCC--
Q psy12150 42 KTIDDVIEQQEVVSVLKKCLSG-----------A-DLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD-- 106 (456)
Q Consensus 42 ~~~~~ivg~~~~~~~l~~~l~~-----------~-~~~-~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~-- 106 (456)
.+|+++.|.+++++.|++.+.- + .++ .+|||||||||||.+|++++.++.. +++.++.++
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~-----~f~~v~~~~l~ 548 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIKGPELL 548 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC-----EEEECCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC-----ceEEeccchhh
Confidence 4789999999999999877631 2 222 2999999999999999999999754 455554433
Q ss_pred ----CcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccHH--------------HHHHHHHHHHhc--cC
Q psy12150 107 ----DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--------------AQAALRRTMEKE--TK 166 (456)
Q Consensus 107 ----~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~~--------------~~~~Ll~~le~~--~~ 166 (456)
..+...+++.+..+... .|| ||||||+|.+... ..+.|+..|+.. ..
T Consensus 549 s~~vGese~~vr~lF~~Ar~~---------~P~----IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~ 615 (806)
T 3cf2_A 549 TMWFGESEANVREIFDKARQA---------APC----VLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp TTTCSSCHHHHHHHHHHHHTT---------CSE----EEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS
T ss_pred ccccchHHHHHHHHHHHHHHc---------CCc----eeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC
Confidence 12223343333332211 233 9999999998532 245567777643 33
Q ss_pred cceEEEEecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHHH
Q psy12150 167 STRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETS----GGDMRRAITCL 239 (456)
Q Consensus 167 ~~~lIl~~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s----~gdlr~~~~~L 239 (456)
.+++|.++|.++.+.+++.+ |+. .+.|+.|+.++..++++..+++.... ++-.++.|++.+ +.|+..+.+.-
T Consensus 616 ~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~~A 694 (806)
T 3cf2_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRA 694 (806)
T ss_dssp SEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHHHH
T ss_pred CEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 46677788899999999987 765 89999999999999988777654332 223466677655 45776665544
No 79
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.39 E-value=8.7e-13 Score=112.77 Aligned_cols=132 Identities=17% Similarity=0.201 Sum_probs=90.0
Q ss_pred cccccHHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHh
Q psy12150 46 DVIEQQEVVSVLKKCLSG--ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQ 123 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~~--~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~ 123 (456)
+++|++..++.+.+.++. ....+++|+||||||||++|+++++...... ..++ +++............+. .
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~--~~~v-~~~~~~~~~~~~~~~~~----~ 74 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQ--GEFV-YRELTPDNAPQLNDFIA----L 74 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTT--SCCE-EEECCTTTSSCHHHHHH----H
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccC--CCEE-EECCCCCcchhhhcHHH----H
Confidence 678999998888887753 2334599999999999999999998754322 2566 77776433322222221 1
Q ss_pred hccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcc-------cccccccCCce--EEEec
Q psy12150 124 TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS-------CIIQPLTSRCS--KFRFK 194 (456)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~-------kl~~~l~~r~~--~i~f~ 194 (456)
... .++||||++.+..+.+..|+++|+.....+.+|+++|... .+.+.+..|.. .++++
T Consensus 75 a~~------------g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~lP 142 (145)
T 3n70_A 75 AQG------------GTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACL 142 (145)
T ss_dssp HTT------------SCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEECC
T ss_pred cCC------------cEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEeCC
Confidence 111 2899999999999999999999987777788888888532 23344445543 55665
Q ss_pred CC
Q psy12150 195 PL 196 (456)
Q Consensus 195 ~~ 196 (456)
|+
T Consensus 143 pL 144 (145)
T 3n70_A 143 PL 144 (145)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 80
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.38 E-value=1.7e-11 Score=117.44 Aligned_cols=153 Identities=14% Similarity=0.198 Sum_probs=93.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCc--ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR--GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE 145 (456)
.+|||||||||||++++++++.+.. +++.+++++.. ..+.....+.......... .....++ ||+|||
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l~~-----~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~-~~~~~~~----vl~iDE 107 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKMGI-----NPIMMSAGELESGNAGEPAKLIRQRYREAAEI-IRKGNMC----CLFIND 107 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTC-----CCEEEEHHHHHCC---HHHHHHHHHHHHHHHH-HTTSSCC----CEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeHHHhhhccCchhHHHHHHHHHHHHHH-HhcCCCe----EEEEec
Confidence 3999999999999999999999844 56666654321 1122222222222221000 0011223 999999
Q ss_pred CCCccHH-------------HHHHHHHHHHh-------------ccCcceEEEEecCcccccccccC--CceEEEecCCC
Q psy12150 146 ADSMTHA-------------AQAALRRTMEK-------------ETKSTRFCLICNYVSCIIQPLTS--RCSKFRFKPLA 197 (456)
Q Consensus 146 ~d~l~~~-------------~~~~Ll~~le~-------------~~~~~~lIl~~~~~~kl~~~l~~--r~~~i~f~~~~ 197 (456)
+|.+.+. .+..|++.++. ....+++|+++|.+..+.+++.+ |+..+-+ .|+
T Consensus 108 iD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~-~P~ 186 (293)
T 3t15_A 108 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APT 186 (293)
T ss_dssp CC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE-CCC
T ss_pred hhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe-CcC
Confidence 9988651 34678888762 22457889999999999999885 5554334 469
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHH
Q psy12150 198 ENTMLTRLQYICEQESVMCDFKALETLVET-SGGDMR 233 (456)
Q Consensus 198 ~~el~~~l~~~~~~~~~~i~~~~l~~L~~~-s~gdlr 233 (456)
.++..++++..+...+ ++.+.+..+... ++.++.
T Consensus 187 ~~~r~~Il~~~~~~~~--~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 187 REDRIGVCTGIFRTDN--VPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp HHHHHHHHHHHHGGGC--CCHHHHHHHHHHSCSCCHH
T ss_pred HHHHHHHHHHhccCCC--CCHHHHHHHhCCCCcccHH
Confidence 9999999998887654 556666665554 455664
No 81
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.38 E-value=6.7e-12 Score=124.97 Aligned_cols=212 Identities=16% Similarity=0.154 Sum_probs=140.4
Q ss_pred cccccccHHHHHHHHHHHhcCC--CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHH
Q psy12150 44 IDDVIEQQEVVSVLKKCLSGAD--LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFA 121 (456)
Q Consensus 44 ~~~ivg~~~~~~~l~~~l~~~~--~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~ 121 (456)
++.++|....+..+.+.+..-. ..+++++|++|+||++++++++...... ..+++.+||.... .+.+...+....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~--~~~fv~v~~~~~~-~~~~~~elfg~~ 212 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRS--KEPFVALNVASIP-RDIFEAELFGYE 212 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTT--TSCEEEEETTTSC-HHHHHHHHHCBC
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCC--CCCeEEEecCCCC-HHHHHHHhcCCC
Confidence 4567887777777766654322 2239999999999999999999875432 3478899998632 222222211111
Q ss_pred HhhccCCCCCCCCC----CCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc-------cc
Q psy12150 122 QQTASGFNQDGKPC----PPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------SC 179 (456)
Q Consensus 122 ~~~~~~~~~~~~~~----~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~-------~k 179 (456)
...+.+ ....+++ ++..++|+||++.|+.+.|..|+++|++.. ..+++|+++|.. ..
T Consensus 213 ~g~~tg-a~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~ 291 (387)
T 1ny5_A 213 KGAFTG-AVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGK 291 (387)
T ss_dssp TTSSTT-CCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTS
T ss_pred CCCCCC-cccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCC
Confidence 111111 0001111 345599999999999999999999998632 356788888753 22
Q ss_pred ccccccCCce--EEEecCCCH--HHHHHHHHHH----HHHcCC---CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhC
Q psy12150 180 IIQPLTSRCS--KFRFKPLAE--NTMLTRLQYI----CEQESV---MCDFKALETLVETS-GGDMRRAITCLQSCARLKG 247 (456)
Q Consensus 180 l~~~l~~r~~--~i~f~~~~~--~el~~~l~~~----~~~~~~---~i~~~~l~~L~~~s-~gdlr~~~~~L~~~~~~~~ 247 (456)
+.+.|..|.. .++++|+.+ +++..++... +.+.+. .+++++++.|..+. +||+|++.|.++.++..+.
T Consensus 292 fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~ 371 (387)
T 1ny5_A 292 FREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSE 371 (387)
T ss_dssp SCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCC
Confidence 3344444543 567777764 5665554444 334443 47999999999765 9999999999999998887
Q ss_pred CCCCCHHHHHHH
Q psy12150 248 GEGIVNEDVLEV 259 (456)
Q Consensus 248 ~~~It~~~v~~~ 259 (456)
+..|+.+++...
T Consensus 372 ~~~i~~~~l~~~ 383 (387)
T 1ny5_A 372 GKFIDRGELSCL 383 (387)
T ss_dssp SSEECHHHHHHH
T ss_pred CCcCcHHHCcHh
Confidence 778998887543
No 82
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.34 E-value=1.4e-11 Score=121.84 Aligned_cols=203 Identities=18% Similarity=0.193 Sum_probs=134.2
Q ss_pred ccccccHHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHH
Q psy12150 45 DDVIEQQEVVSVLKKCLSG--ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQ 122 (456)
Q Consensus 45 ~~ivg~~~~~~~l~~~l~~--~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~ 122 (456)
.+++|....+..+...+.. ....+++++|++|+||+.+++.++....... .++.+||..... +.+...+.....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~---~fv~vnc~~~~~-~~~~~~lfg~~~ 204 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKG---AFVDLNCASIPQ-ELAESELFGHEK 204 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCS---CEEEEESSSSCT-TTHHHHHHEECS
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccC---CcEEEEcccCCh-HHHHHHhcCccc
Confidence 3577877776666555432 1223499999999999999999998764322 388999987432 122221111000
Q ss_pred hhccCCCCCCCCC----CCcEEEEEcCCCCccHHHHHHHHHHHHhcc-----------CcceEEEEecCc-------ccc
Q psy12150 123 QTASGFNQDGKPC----PPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------SCI 180 (456)
Q Consensus 123 ~~~~~~~~~~~~~----~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-----------~~~~lIl~~~~~-------~kl 180 (456)
..+.+ ....+++ ++..++|+||++.|+...|..|+++|++.. ..+++|.+++.. ..+
T Consensus 205 g~~tg-a~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~f 283 (368)
T 3dzd_A 205 GAFTG-ALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNF 283 (368)
T ss_dssp CSSSS-CCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSS
T ss_pred cccCC-cccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCc
Confidence 00100 0000000 234589999999999999999999998642 246688888743 233
Q ss_pred cccccCCce--EEEecCCCH--HHHHHHHHHHH----HHcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhCC
Q psy12150 181 IQPLTSRCS--KFRFKPLAE--NTMLTRLQYIC----EQES---VMCDFKALETLVETS-GGDMRRAITCLQSCARLKGG 248 (456)
Q Consensus 181 ~~~l~~r~~--~i~f~~~~~--~el~~~l~~~~----~~~~---~~i~~~~l~~L~~~s-~gdlr~~~~~L~~~~~~~~~ 248 (456)
-+.|..|+. .++++|+.+ +++..++...+ .+.+ ..+++++++.|..+. +||+|++.|.++.++..+.+
T Consensus 284 r~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~~~ 363 (368)
T 3dzd_A 284 REDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILCEG 363 (368)
T ss_dssp CHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTCCS
T ss_pred cHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCCC
Confidence 445666665 567888877 67666555444 3334 458999999999876 99999999999999887766
Q ss_pred CCCC
Q psy12150 249 EGIV 252 (456)
Q Consensus 249 ~~It 252 (456)
+.|+
T Consensus 364 ~~i~ 367 (368)
T 3dzd_A 364 EVIK 367 (368)
T ss_dssp SBCC
T ss_pred CccC
Confidence 6664
No 83
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.34 E-value=7.2e-11 Score=115.36 Aligned_cols=188 Identities=16% Similarity=0.116 Sum_probs=120.2
Q ss_pred CcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCc------ChHHHHHH
Q psy12150 43 TIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR------GIQVIRDK 116 (456)
Q Consensus 43 ~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~------~~~~i~~~ 116 (456)
.-+.++|++..++.|.+++..+ +.++|+||+|+|||++++.+++... ++.+++.... ....+...
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP-------GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS-------EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC-------cEEEEeecccccccCCCHHHHHHH
Confidence 3457899999999999999875 5699999999999999999998751 3444433211 11111111
Q ss_pred HHHHHHh------h--------ccCCCCCCCCC-------------CCcEEEEEcCCCCccH-------HHHHHHHHHHH
Q psy12150 117 VKTFAQQ------T--------ASGFNQDGKPC-------------PPFKIVILDEADSMTH-------AAQAALRRTME 162 (456)
Q Consensus 117 l~~~~~~------~--------~~~~~~~~~~~-------------~~~~iviIDE~d~l~~-------~~~~~Ll~~le 162 (456)
+...... . ........... .+..+|||||++.+.. +....|...++
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 1110000 0 00000000000 0134899999999864 33444545554
Q ss_pred hccCcceEEEEecCc---cc------ccccccCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Q psy12150 163 KETKSTRFCLICNYV---SC------IIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDM 232 (456)
Q Consensus 163 ~~~~~~~lIl~~~~~---~k------l~~~l~~r~-~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdl 232 (456)
.. ..+.+|+++... .. ...++..|. ..+++.|++.++..+++...+...|..++++.+..++..++|++
T Consensus 161 ~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P 239 (350)
T 2qen_A 161 SL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIP 239 (350)
T ss_dssp HC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCH
T ss_pred hc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH
Confidence 43 356677776542 11 123344444 48999999999999999988887888899999999999999999
Q ss_pred HHHHHHHH
Q psy12150 233 RRAITCLQ 240 (456)
Q Consensus 233 r~~~~~L~ 240 (456)
..+.....
T Consensus 240 ~~l~~~~~ 247 (350)
T 2qen_A 240 GWLVVFGV 247 (350)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 86555443
No 84
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.32 E-value=1.3e-12 Score=136.85 Aligned_cols=206 Identities=18% Similarity=0.160 Sum_probs=129.3
Q ss_pred ccccccHHHHHHHHHHHhcCCCC-----------eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHH
Q psy12150 45 DDVIEQQEVVSVLKKCLSGADLP-----------HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVI 113 (456)
Q Consensus 45 ~~ivg~~~~~~~l~~~l~~~~~~-----------~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i 113 (456)
..++|++.++..+.-.+.++... |+||+||||||||++|+++++.+....+.... ..++....+. ..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~-~~~~~~l~~~-~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGK-GSTAAGLTAA-VV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTT-CSTTTTSEEE-CS
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCC-ccccccccce-ee
Confidence 36789999888887777666321 69999999999999999999876432111000 0111110000 00
Q ss_pred HHHHHHHHHhhccCCCCCCCCC----CCcEEEEEcCCCCccHHHHHHHHHHHHhcc-------------CcceEEEEecC
Q psy12150 114 RDKVKTFAQQTASGFNQDGKPC----PPFKIVILDEADSMTHAAQAALRRTMEKET-------------KSTRFCLICNY 176 (456)
Q Consensus 114 ~~~l~~~~~~~~~~~~~~~~~~----~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-------------~~~~lIl~~~~ 176 (456)
... ..+ .....++ ++..+++|||++.+.++.++.|++.|++.. ..+.+|.++|.
T Consensus 373 ~~~--------~~g-~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp 443 (595)
T 3f9v_A 373 REK--------GTG-EYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNP 443 (595)
T ss_dssp SGG--------GTS-SCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECC
T ss_pred ecc--------ccc-cccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCC
Confidence 000 000 0000000 123499999999999999999999998632 34567888886
Q ss_pred cc-------------cccccccCCce-EEEecCCCHHHHHHHHHHHHHHc-------------------------CCCCC
Q psy12150 177 VS-------------CIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQE-------------------------SVMCD 217 (456)
Q Consensus 177 ~~-------------kl~~~l~~r~~-~i~f~~~~~~el~~~l~~~~~~~-------------------------~~~i~ 217 (456)
.. .+.+++.+|+. .+.+.+++..+...+.+.++... ...++
T Consensus 444 ~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls 523 (595)
T 3f9v_A 444 KFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKIT 523 (595)
T ss_dssp TTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCC
T ss_pred cCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCC
Confidence 54 78889999994 55555555444334344333321 22577
Q ss_pred HHHHHHHHHH---------------cCCCHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhC
Q psy12150 218 FKALETLVET---------------SGGDMRRAITCLQSCARLK---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 218 ~~~l~~L~~~---------------s~gdlr~~~~~L~~~~~~~---~~~~It~~~v~~~~~ 261 (456)
+++.+.|.+. .++++|.+.+.+..+...+ +...|+.+||.+++.
T Consensus 524 ~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~ 585 (595)
T 3f9v_A 524 SEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAIN 585 (595)
T ss_dssp CCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 7777777775 4678888888887664444 677899999987763
No 85
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.28 E-value=4.7e-12 Score=107.88 Aligned_cols=128 Identities=11% Similarity=0.124 Sum_probs=84.6
Q ss_pred cccccHHHHHHHHHHHhc--CCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHh
Q psy12150 46 DVIEQQEVVSVLKKCLSG--ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQ 123 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~~--~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~ 123 (456)
+++|++..++.+.+.+.. ....+++|+||||||||++|+++++... .++.+++..... .. .......
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~~~-~~----~~~~~~~ 73 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEYLI-DM----PMELLQK 73 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTHHH-HC----HHHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhCCh-Hh----hhhHHHh
Confidence 578998888888777653 2334599999999999999999988642 577788775211 11 1122222
Q ss_pred hccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhcc-CcceEEEEecCc-cc----ccccccCCce--EEEecC
Q psy12150 124 TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-KSTRFCLICNYV-SC----IIQPLTSRCS--KFRFKP 195 (456)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~-~~~~lIl~~~~~-~k----l~~~l~~r~~--~i~f~~ 195 (456)
. +..+|||||++.+..+.+..|++++++.. ..+++|+++|.. .. +.+.+..|.. .++++|
T Consensus 74 a------------~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~lPp 141 (143)
T 3co5_A 74 A------------EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGISCEEKLAGLFSESVVRIPP 141 (143)
T ss_dssp T------------TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEECC
T ss_pred C------------CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeCCC
Confidence 1 12399999999999999999999998753 457788888753 22 2233444433 455655
Q ss_pred C
Q psy12150 196 L 196 (456)
Q Consensus 196 ~ 196 (456)
+
T Consensus 142 L 142 (143)
T 3co5_A 142 L 142 (143)
T ss_dssp C
T ss_pred C
Confidence 4
No 86
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.23 E-value=5.7e-11 Score=128.78 Aligned_cols=184 Identities=18% Similarity=0.191 Sum_probs=124.1
Q ss_pred ccCCCCcccccccHHHHHHHHHHHhc------------CCC-CeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeC
Q psy12150 38 KYRPKTIDDVIEQQEVVSVLKKCLSG------------ADL-PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (456)
Q Consensus 38 ky~P~~~~~ivg~~~~~~~l~~~l~~------------~~~-~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~ 104 (456)
.+.+-+|++++|++..++.|.+++.. ... .+++|+||||||||+++++++..+.. .++.+++
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~-----~~i~v~~ 271 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLING 271 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC-----EEEEEEH
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC-----cEEEEEc
Confidence 45567899999999999998888753 122 23999999999999999999997633 5677776
Q ss_pred CCCcC--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH-----------HHHHHHHHHHHhcc--Ccce
Q psy12150 105 SDDRG--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEKET--KSTR 169 (456)
Q Consensus 105 ~~~~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~-----------~~~~~Ll~~le~~~--~~~~ 169 (456)
.+..+ .......+....+.+... ...++|+||++.+.. ..+..|+..++... ..++
T Consensus 272 ~~l~~~~~g~~~~~l~~vf~~a~~~---------~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 272 PEIMSKLAGESESNLRKAFEEAEKN---------APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp HHHSSSSTTHHHHHHHHHHHHHHHH---------CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred hHhhhhhhhhHHHHHHHHHHHHHhc---------CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 44211 122223333333222111 123999999987753 23556777776432 3567
Q ss_pred EEEEecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Q psy12150 170 FCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236 (456)
Q Consensus 170 lIl~~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~ 236 (456)
+|+++|.+..+.+++.+ |+. .+.+..|+.++..++++..+..... ..+..+..++..+.|.....+
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~~la~~t~g~~g~dl 411 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDLEQVANETHGHVGADL 411 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCC-CTTCCTHHHHHSCSSCCHHHH
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCC-cccchhHHHHHhhcCcchHHH
Confidence 78888888888888877 664 6899999999999999877664332 233346677777777554433
No 87
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.14 E-value=1.9e-12 Score=140.43 Aligned_cols=187 Identities=19% Similarity=0.191 Sum_probs=117.2
Q ss_pred CCCCcccccccHHHHHHHHHHHhc-----------C--CCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCC
Q psy12150 40 RPKTIDDVIEQQEVVSVLKKCLSG-----------A--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD 106 (456)
Q Consensus 40 ~P~~~~~ivg~~~~~~~l~~~l~~-----------~--~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~ 106 (456)
...+|+++.|.+.+++.+.+.+.. + ...+++|+||||||||+++++++..+.. .++.+++++
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~-----~~i~v~~~~ 546 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIKGPE 546 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC-----CCCCCCCSS
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC-----CEEEEechH
Confidence 345789999999999999887742 1 1223999999999999999999999854 344555544
Q ss_pred Cc------ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCCCccH--------------HHHHHHHHHHHh--c
Q psy12150 107 DR------GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------------AAQAALRRTMEK--E 164 (456)
Q Consensus 107 ~~------~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d~l~~--------------~~~~~Ll~~le~--~ 164 (456)
.. ....+...+....... ..++|+||+|.+.. ..++.|+..|+. .
T Consensus 547 l~~~~~g~~~~~i~~~f~~a~~~~-------------p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~ 613 (806)
T 1ypw_A 547 LLTMWFGESEANVREIFDKARQAA-------------PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp STTCCTTTSSHHHHHHHHHHHHHC-------------SBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC----
T ss_pred hhhhhcCccHHHHHHHHHHHHhcC-------------CeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccc
Confidence 21 1223333333322221 12899999998731 123445554543 2
Q ss_pred cCcceEEEEecCcccccccccC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Q psy12150 165 TKSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITCLQ 240 (456)
Q Consensus 165 ~~~~~lIl~~~~~~kl~~~l~~--r~~-~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~g-dlr~~~~~L~ 240 (456)
...+++|.++|.++.+.+++.+ |+. .+.|+.|+.++...+++..+++.... .+..++.|++.+.| +-+.+.+.++
T Consensus 614 ~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sgadi~~l~~ 692 (806)
T 1ypw_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp --CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----CCCCSCSCGGGSSSCCHHHHHHHH
T ss_pred cCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCC-cccCHHHHHHhccccCHHHHHHHHH
Confidence 3456778888889999999998 886 89999999999999998877543321 11223445554443 2233333444
Q ss_pred HHHHh
Q psy12150 241 SCARL 245 (456)
Q Consensus 241 ~~~~~ 245 (456)
.++..
T Consensus 693 ~a~~~ 697 (806)
T 1ypw_A 693 RACKL 697 (806)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 88
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.12 E-value=1.3e-09 Score=106.70 Aligned_cols=187 Identities=19% Similarity=0.171 Sum_probs=117.4
Q ss_pred cccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC-----cChHHHHHHHH
Q psy12150 44 IDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD-----RGIQVIRDKVK 118 (456)
Q Consensus 44 ~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~-----~~~~~i~~~l~ 118 (456)
.+.++|++..++.|.+ +.. +.++|+||+|+|||++++.+++.+.. .++.+++... .....+...+.
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHHHH
Confidence 4578999999999999 775 57999999999999999999998643 2445554421 12222222222
Q ss_pred HHHHh----------hcc--------CC--C--C---CCCC----------CC-CcEEEEEcCCCCccH----HHHHHHH
Q psy12150 119 TFAQQ----------TAS--------GF--N--Q---DGKP----------CP-PFKIVILDEADSMTH----AAQAALR 158 (456)
Q Consensus 119 ~~~~~----------~~~--------~~--~--~---~~~~----------~~-~~~iviIDE~d~l~~----~~~~~Ll 158 (456)
..... ... .. . . .... .. +.-+|+|||++.+.. +....|.
T Consensus 83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~ 162 (357)
T 2fna_A 83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALA 162 (357)
T ss_dssp HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHH
T ss_pred HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHH
Confidence 11100 000 00 0 0 0000 00 244899999999854 2233444
Q ss_pred HHHHhccCcceEEEEecCcc---------cccccccCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Q psy12150 159 RTMEKETKSTRFCLICNYVS---------CIIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETS 228 (456)
Q Consensus 159 ~~le~~~~~~~lIl~~~~~~---------kl~~~l~~r~-~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s 228 (456)
...+.. ..+.+|+++.... ....++..|. ..+++.+++.++..+++...+...+...++. ..++..+
T Consensus 163 ~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~--~~i~~~t 239 (357)
T 2fna_A 163 YAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY--EVVYEKI 239 (357)
T ss_dssp HHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH--HHHHHHH
T ss_pred HHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH--HHHHHHh
Confidence 444443 3566777776432 1123355554 6899999999999999998887667666654 8899999
Q ss_pred CCCHHHHHHHHHHH
Q psy12150 229 GGDMRRAITCLQSC 242 (456)
Q Consensus 229 ~gdlr~~~~~L~~~ 242 (456)
+|++..+...+..+
T Consensus 240 ~G~P~~l~~~~~~~ 253 (357)
T 2fna_A 240 GGIPGWLTYFGFIY 253 (357)
T ss_dssp CSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99998766555443
No 89
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.03 E-value=3.9e-10 Score=99.68 Aligned_cols=132 Identities=14% Similarity=0.196 Sum_probs=78.8
Q ss_pred hccCCCCcccccc----cHHHHHHHHHHHhcCCC---CeEEEECCCCCcHHHHHHHHHHHhc-CCccccceEEeeCCCCc
Q psy12150 37 EKYRPKTIDDVIE----QQEVVSVLKKCLSGADL---PHFLFYGPPGTGKTSTMIAACHQLF-GDMYRERILELNASDDR 108 (456)
Q Consensus 37 eky~P~~~~~ivg----~~~~~~~l~~~l~~~~~---~~~Ll~G~~G~GKT~~a~~l~~~l~-~~~~~~~~~e~n~~~~~ 108 (456)
++|++.+|+++++ +..+++.+++++++... ..++|+||+|+|||+++++++..+. .... .++.++..
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~--~~~~~~~~--- 76 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI--RGYFFDTK--- 76 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC--CCCEEEHH---
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC--eEEEEEHH---
Confidence 6899999999986 45666777777765443 2399999999999999999999874 1111 23333322
Q ss_pred ChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCC--CccHHHHHHHHHHHHhcc-CcceEEEEecCcc
Q psy12150 109 GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD--SMTHAAQAALRRTMEKET-KSTRFCLICNYVS 178 (456)
Q Consensus 109 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d--~l~~~~~~~Ll~~le~~~-~~~~lIl~~~~~~ 178 (456)
.+.+.+............ . ....+..++|+||++ .+.....+.|.++++... ....+|+++|...
T Consensus 77 ---~~~~~~~~~~~~~~~~~~-~-~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 77 ---DLIFRLKHLMDEGKDTKF-L-KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp ---HHHHHHHHHHHHTCCSHH-H-HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred ---HHHHHHHHHhcCchHHHH-H-HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 111111111110000000 0 000123499999998 566767777777775432 3456777777543
No 90
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.94 E-value=8.5e-10 Score=112.35 Aligned_cols=145 Identities=14% Similarity=0.177 Sum_probs=79.9
Q ss_pred CCCCCCCCcchhccCCCCccccc-ccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeC
Q psy12150 26 GKTRNKPVPWVEKYRPKTIDDVI-EQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (456)
Q Consensus 26 ~~~~~~~~~w~eky~P~~~~~iv-g~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~ 104 (456)
+.-+....||.++|+|.+|+++- +|..++..+..++..+. ++++|.|++|||||+++.+++..+..... ..++-+..
T Consensus 5 ~~~~~~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~~~-~~il~~a~ 82 (459)
T 3upu_A 5 HHHHHHSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALISTGE-TGIILAAP 82 (459)
T ss_dssp ----------------CCSSCCCHHHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHTTC-CCEEEEES
T ss_pred CCCCCccCCCccccCCCccccCCHHHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhcCC-ceEEEecC
Confidence 34456678999999999999987 68888888888888765 37999999999999999999988754322 12222222
Q ss_pred CCCcChHHHHHHH-------HHHHHhhccCCC-------CCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceE
Q psy12150 105 SDDRGIQVIRDKV-------KTFAQQTASGFN-------QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRF 170 (456)
Q Consensus 105 ~~~~~~~~i~~~l-------~~~~~~~~~~~~-------~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~l 170 (456)
+. .....+.+.+ ..+......... ........+++|||||++.+....+..|++.+. ....+
T Consensus 83 T~-~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~ 158 (459)
T 3upu_A 83 TH-AAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTI 158 (459)
T ss_dssp SH-HHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEE
T ss_pred cH-HHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEE
Confidence 21 1122222221 111111000000 001111356799999999999888888887764 44567
Q ss_pred EEEecC
Q psy12150 171 CLICNY 176 (456)
Q Consensus 171 Il~~~~ 176 (456)
+++++.
T Consensus 159 ~~vGD~ 164 (459)
T 3upu_A 159 IGIGDN 164 (459)
T ss_dssp EEEECT
T ss_pred EEECCH
Confidence 777764
No 91
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.89 E-value=8e-09 Score=96.11 Aligned_cols=136 Identities=19% Similarity=0.251 Sum_probs=88.1
Q ss_pred HHHHHHHHHhcC-CCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCC
Q psy12150 53 VVSVLKKCLSGA-DLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ 130 (456)
Q Consensus 53 ~~~~l~~~l~~~-~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~ 130 (456)
....+..|+++. ...+ ++||||||||||+++.++++.+.- +..++.+.. .+ ...
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l------~G~vn~~~~-----------~f---~l~---- 144 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF------YGCVNWTNE-----------NF---PFN---- 144 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC------EEECCTTCS-----------SC---TTG----
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcc------cceeecccc-----------cc---ccc----
Confidence 345677888775 3234 999999999999999999997421 112222210 00 000
Q ss_pred CCCCCCCcEEEEEcCCCCccHHHHHHHHHHHH--------hcc-----CcceEEEEecC-c----------ccccccccC
Q psy12150 131 DGKPCPPFKIVILDEADSMTHAAQAALRRTME--------KET-----KSTRFCLICNY-V----------SCIIQPLTS 186 (456)
Q Consensus 131 ~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le--------~~~-----~~~~lIl~~~~-~----------~kl~~~l~~ 186 (456)
+..++++++.||+. +..+.++.+.++++ +.. ..+.+|+++|. . ....++|++
T Consensus 145 ---~~~~k~i~l~Ee~~-~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~s 220 (267)
T 1u0j_A 145 ---DCVDKMVIWWEEGK-MTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD 220 (267)
T ss_dssp ---GGSSCSEEEECSCC-EETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHT
T ss_pred ---cccccEEEEecccc-chhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhh
Confidence 01134466666665 44556667777776 322 45667888885 2 245678999
Q ss_pred CceEEEec--------CCCHHHHHHHHHHHHHHcCCCCC
Q psy12150 187 RCSKFRFK--------PLAENTMLTRLQYICEQESVMCD 217 (456)
Q Consensus 187 r~~~i~f~--------~~~~~el~~~l~~~~~~~~~~i~ 217 (456)
|+..+.|. +++.+++..++.. ++.++.+++
T Consensus 221 R~~~f~F~~~~p~~~~~lt~~~~~~f~~w-~~~~~~~~~ 258 (267)
T 1u0j_A 221 RMFKFELTRRLDHDFGKVTKQEVKDFFRW-AKDHVVEVE 258 (267)
T ss_dssp TEEEEECCSCCCTTSCCCCHHHHHHHHHH-HHHTCCCCC
T ss_pred hEEEEECCCcCCcccCCCCHHHHHHHHHH-HHHcCCCCc
Confidence 99999998 8999999999984 466666554
No 92
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.80 E-value=7.6e-09 Score=93.02 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=50.5
Q ss_pred cchhccCCCCcccccccH----HHHHHHHHHHhcCC----CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeC
Q psy12150 34 PWVEKYRPKTIDDVIEQQ----EVVSVLKKCLSGAD----LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (456)
Q Consensus 34 ~w~eky~P~~~~~ivg~~----~~~~~l~~~l~~~~----~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~ 104 (456)
.+..+|++.+|+++++.+ .+++.+..++.... ..+++|+||+|+|||++++++++.+..... .++.+++
T Consensus 14 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~--~~~~~~~ 90 (202)
T 2w58_A 14 FMPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNV--SSLIVYV 90 (202)
T ss_dssp SSCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTC--CEEEEEH
T ss_pred CCCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC--eEEEEEh
Confidence 345678889999999744 35566777776542 146999999999999999999998865432 4444444
No 93
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.77 E-value=2.8e-07 Score=91.85 Aligned_cols=201 Identities=16% Similarity=0.074 Sum_probs=123.6
Q ss_pred cccccHHHHHHHHHHHhcCC-----CCeEEEECCCCCcHHHHHHHH-HHHhcCCccccceEEeeCCCCcChHHHHHHHHH
Q psy12150 46 DVIEQQEVVSVLKKCLSGAD-----LPHFLFYGPPGTGKTSTMIAA-CHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119 (456)
Q Consensus 46 ~ivg~~~~~~~l~~~l~~~~-----~~~~Ll~G~~G~GKT~~a~~l-~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~ 119 (456)
.++|++.++..+.-.+-+|. -.|+||.|+||+ ||.+++++ ++.+ . +..+.....+. ...+...+.
T Consensus 214 pI~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~-p---R~~ft~g~~ss---~~gLt~s~r- 284 (506)
T 3f8t_A 214 PLPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLA-P---RGVYVDLRRTE---LTDLTAVLK- 284 (506)
T ss_dssp CSTTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTC-S---SEEEEEGGGCC---HHHHSEEEE-
T ss_pred ccCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhC-C---CeEEecCCCCC---ccCceEEEE-
Confidence 37899998888877777663 126999999999 99999999 6643 1 11121111111 000000000
Q ss_pred HHHhhccCCCCCCCCC----CCcEEEEEcCCCCccHHHHHHHHHHHHhc---------cCcceEEEEecCcc--------
Q psy12150 120 FAQQTASGFNQDGKPC----PPFKIVILDEADSMTHAAQAALRRTMEKE---------TKSTRFCLICNYVS-------- 178 (456)
Q Consensus 120 ~~~~~~~~~~~~~~~~----~~~~iviIDE~d~l~~~~~~~Ll~~le~~---------~~~~~lIl~~~~~~-------- 178 (456)
.. .+ ...+++ ++..++++||++.+.+..+.+|++.|++. +..+.+|.++|...
T Consensus 285 ---~~-tG--~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~ 358 (506)
T 3f8t_A 285 ---ED-RG--WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPI 358 (506)
T ss_dssp ---ES-SS--EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGG
T ss_pred ---cC-CC--cccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCc
Confidence 00 00 000000 34559999999999999999999999964 34566777777543
Q ss_pred ---cccccccCCceEEEe---------------cCCCHHHHHHHHHHHH-HHcCCCCCHHHHHHHHHH------------
Q psy12150 179 ---CIIQPLTSRCSKFRF---------------KPLAENTMLTRLQYIC-EQESVMCDFKALETLVET------------ 227 (456)
Q Consensus 179 ---kl~~~l~~r~~~i~f---------------~~~~~~el~~~l~~~~-~~~~~~i~~~~l~~L~~~------------ 227 (456)
.+.+++.+|+..+.. ..++.+++++++...- ..-...+++++.+.|.+.
T Consensus 359 ~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~ 438 (506)
T 3f8t_A 359 ARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERL 438 (506)
T ss_dssp GGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCccccc
Confidence 566788899842221 2345566766665443 123567899888776642
Q ss_pred ------cCCCHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhC
Q psy12150 228 ------SGGDMRRAITCLQSCARLK---GGEGIVNEDVLEVTG 261 (456)
Q Consensus 228 ------s~gdlr~~~~~L~~~~~~~---~~~~It~~~v~~~~~ 261 (456)
.+-.+|.+...+.-+.+.| +...|+.+||.+++.
T Consensus 439 ~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~ 481 (506)
T 3f8t_A 439 GMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAE 481 (506)
T ss_dssp HTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHH
Confidence 1235677666665443333 677899999987764
No 94
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.73 E-value=3e-08 Score=88.14 Aligned_cols=117 Identities=22% Similarity=0.321 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCCC-eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEe-eCCCCcChHHHHHHHHHHHHhhccCCC
Q psy12150 52 EVVSVLKKCLSGADLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILEL-NASDDRGIQVIRDKVKTFAQQTASGFN 129 (456)
Q Consensus 52 ~~~~~l~~~l~~~~~~-~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~-n~~~~~~~~~i~~~l~~~~~~~~~~~~ 129 (456)
..+..++.++++-... +++||||||||||+++.++++.+.+. ++.+ |...... ....
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~-----i~~fans~s~f~-------------l~~l--- 101 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGA-----VISFVNSTSHFW-------------LEPL--- 101 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCE-----ECCCCCSSSCGG-------------GGGG---
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCC-----eeeEEeccchhh-------------hccc---
Confidence 4467778888752222 49999999999999999999988542 2211 1111000 0000
Q ss_pred CCCCCCCCcEEEEEcCCCCccHHH-HHHHHHHHHhcc-------------CcceEEEEecCc---ccccccccCCceEEE
Q psy12150 130 QDGKPCPPFKIVILDEADSMTHAA-QAALRRTMEKET-------------KSTRFCLICNYV---SCIIQPLTSRCSKFR 192 (456)
Q Consensus 130 ~~~~~~~~~~iviIDE~d~l~~~~-~~~Ll~~le~~~-------------~~~~lIl~~~~~---~kl~~~l~~r~~~i~ 192 (456)
.+.+++++||++.-..+. ...+..+++..+ ..+.+|+++|.. ....+.|.+|+..+.
T Consensus 102 ------~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~ 175 (212)
T 1tue_A 102 ------TDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFE 175 (212)
T ss_dssp ------TTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEEE
T ss_pred ------CCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEEE
Confidence 144599999998432222 234455555431 124677888853 344577999999988
Q ss_pred ecC
Q psy12150 193 FKP 195 (456)
Q Consensus 193 f~~ 195 (456)
|+.
T Consensus 176 F~~ 178 (212)
T 1tue_A 176 FPN 178 (212)
T ss_dssp CCS
T ss_pred cCC
Confidence 874
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.71 E-value=6.8e-08 Score=114.94 Aligned_cols=149 Identities=17% Similarity=0.169 Sum_probs=101.2
Q ss_pred HHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCC--
Q psy12150 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP-- 134 (456)
Q Consensus 57 l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-- 134 (456)
+..++..+ .++||+||||||||++++.+.... ....+..++.+.......+...+...........+....|
T Consensus 1260 l~~~l~~~--~~vLL~GPpGtGKT~la~~~l~~~----~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~ 1333 (2695)
T 4akg_A 1260 FYDLLNSK--RGIILCGPPGSGKTMIMNNALRNS----SLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKS 1333 (2695)
T ss_dssp HHHHHHHT--CEEEEECSTTSSHHHHHHHHHHSC----SSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBS
T ss_pred HHHHHHCC--CeEEEECCCCCCHHHHHHHHHhcC----CCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCC
Confidence 45556655 369999999999999997776653 2236777888887777666666554322111000000001
Q ss_pred CCCcEEEEEcCCCCccH------HHHHHHHHHHHhcc------------CcceEEEEecCc-----ccccccccCCceEE
Q psy12150 135 CPPFKIVILDEADSMTH------AAQAALRRTMEKET------------KSTRFCLICNYV-----SCIIQPLTSRCSKF 191 (456)
Q Consensus 135 ~~~~~iviIDE~d~l~~------~~~~~Ll~~le~~~------------~~~~lIl~~~~~-----~kl~~~l~~r~~~i 191 (456)
...+-|+||||++.... ...+.|++.++... ..+.+|.++|++ ..+.+++.+|+..+
T Consensus 1334 ~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi 1413 (2695)
T 4akg_A 1334 DIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAIL 1413 (2695)
T ss_dssp SSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEE
T ss_pred CCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEE
Confidence 12344999999876432 25677788887421 135677788876 46889999999999
Q ss_pred EecCCCHHHHHHHHHHHHHH
Q psy12150 192 RFKPLAENTMLTRLQYICEQ 211 (456)
Q Consensus 192 ~f~~~~~~el~~~l~~~~~~ 211 (456)
.++.|+.+++..++..++..
T Consensus 1414 ~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1414 YLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp ECCCCTTTHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 96
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.68 E-value=3.1e-08 Score=84.63 Aligned_cols=98 Identities=16% Similarity=0.165 Sum_probs=64.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEcCCC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~iviIDE~d 147 (456)
.++|+||+|+|||+++++++..+.... ...+.++..+.... .+ .. +.+++||||++
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g--~~~~~~~~~~~~~~--------~~-----~~---------~~~lLilDE~~ 93 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAG--KNAAYIDAASMPLT--------DA-----AF---------EAEYLAVDQVE 93 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTT--CCEEEEETTTSCCC--------GG-----GG---------GCSEEEEESTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcC--CcEEEEcHHHhhHH--------HH-----Hh---------CCCEEEEeCcc
Confidence 499999999999999999999875422 24667776654332 00 00 22399999999
Q ss_pred CccHHHHHHHHHHHHhcc--CcceEEEEecCc-cc--ccccccCCce
Q psy12150 148 SMTHAAQAALRRTMEKET--KSTRFCLICNYV-SC--IIQPLTSRCS 189 (456)
Q Consensus 148 ~l~~~~~~~Ll~~le~~~--~~~~lIl~~~~~-~k--l~~~l~~r~~ 189 (456)
.+....++.|..+++... ..+++|++++.. .. ..+.+.+|+.
T Consensus 94 ~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~ 140 (149)
T 2kjq_A 94 KLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMA 140 (149)
T ss_dssp CCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGG
T ss_pred ccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHh
Confidence 988766777777765422 123366677743 21 1267777764
No 97
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.60 E-value=2.4e-08 Score=95.98 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=49.0
Q ss_pred cchhccCCCCccccccc----HHHHHHHHHHHhcCC---CCeEEEECCCCCcHHHHHHHHHHHhc-CCccccceEEeeC
Q psy12150 34 PWVEKYRPKTIDDVIEQ----QEVVSVLKKCLSGAD---LPHFLFYGPPGTGKTSTMIAACHQLF-GDMYRERILELNA 104 (456)
Q Consensus 34 ~w~eky~P~~~~~ivg~----~~~~~~l~~~l~~~~---~~~~Ll~G~~G~GKT~~a~~l~~~l~-~~~~~~~~~e~n~ 104 (456)
.+...+++.+|+++++. ..++..+..++.... ..+++|+||||+|||+++.++++.+. .... .+..+++
T Consensus 113 ~l~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~--~v~~~~~ 189 (308)
T 2qgz_A 113 SLPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGV--STTLLHF 189 (308)
T ss_dssp SSCGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCC--CEEEEEH
T ss_pred CCCHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCC--cEEEEEH
Confidence 34456677899999963 335566777887532 34599999999999999999999876 4322 3444443
No 98
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.41 E-value=5.6e-06 Score=86.75 Aligned_cols=190 Identities=11% Similarity=0.075 Sum_probs=103.8
Q ss_pred CCCCcccccccHHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHhc--CCccccceEEeeCCCCcChHHHHH
Q psy12150 40 RPKTIDDVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLF--GDMYRERILELNASDDRGIQVIRD 115 (456)
Q Consensus 40 ~P~~~~~ivg~~~~~~~l~~~l~~~--~~~~~Ll~G~~G~GKT~~a~~l~~~l~--~~~~~~~~~e~n~~~~~~~~~i~~ 115 (456)
.|.....++|++..++.|.+.+... ..+.+.|+|++|+|||+++..+++... ...+...+..++.+.. ....+..
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 4666678999999999999999743 233499999999999999999875321 1111112233332221 1122222
Q ss_pred HHHHHHHhhcc-CCCCCCCCC----------------CCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcc
Q psy12150 116 KVKTFAQQTAS-GFNQDGKPC----------------PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS 178 (456)
Q Consensus 116 ~l~~~~~~~~~-~~~~~~~~~----------------~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~ 178 (456)
.+..+...... .......+. ..+-+||+||++.. . . ++..+..+.+|+++....
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~----~---l~~l~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--W----V---LKAFDSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--H----H---HHTTCSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--H----H---HHHhcCCCeEEEECCCcH
Confidence 22221111100 000000000 02339999999762 1 1 222245566776765432
Q ss_pred cccccccCCceEEE-ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q psy12150 179 CIIQPLTSRCSKFR-FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241 (456)
Q Consensus 179 kl~~~l~~r~~~i~-f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~ 241 (456)
...........+. ..+++.++..+++...+.... .-.++....|++.++|.+-.+......
T Consensus 269 -~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~i~~~~~G~PLal~~~a~~ 330 (591)
T 1z6t_A 269 -VTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKK-ADLPEQAHSIIKECKGSPLVVSLIGAL 330 (591)
T ss_dssp -GGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSCG-GGSCTHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -HHHhcCCCceEeecCCCCCHHHHHHHHHHHhCCCc-ccccHHHHHHHHHhCCCcHHHHHHHHH
Confidence 1111112222222 258999999999988764321 112457789999999998765544443
No 99
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.32 E-value=2.6e-05 Score=93.17 Aligned_cols=169 Identities=20% Similarity=0.192 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCC
Q psy12150 52 EVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131 (456)
Q Consensus 52 ~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 131 (456)
.....+..++..+. +.++.||+|||||++++.+++.++. .++.+||++......+...+..+...+
T Consensus 633 r~~~tl~~Al~~~~--~~~l~GpaGtGKTe~vk~LA~~lg~-----~~v~~nc~e~ld~~~lg~~~~g~~~~G------- 698 (2695)
T 4akg_A 633 IGFATLTDSLHQKY--GGCFFGPAGTGKTETVKAFGQNLGR-----VVVVFNCDDSFDYQVLSRLLVGITQIG------- 698 (2695)
T ss_dssp HHHHHHHHHHHTTC--EEEEECCTTSCHHHHHHHHHHTTTC-----CCEEEETTSSCCHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHhCC--CCcccCCCCCCcHHHHHHHHHHhCC-----cEEEEECCCCCChhHhhHHHHHHHhcC-------
Confidence 34455666666543 4789999999999999999999865 578889999888877766666655442
Q ss_pred CCCCCCcEEEEEcCCCCccHHHHHHHH-------HHHHhc-------------cCcceEEEEec----CcccccccccCC
Q psy12150 132 GKPCPPFKIVILDEADSMTHAAQAALR-------RTMEKE-------------TKSTRFCLICN----YVSCIIQPLTSR 187 (456)
Q Consensus 132 ~~~~~~~~iviIDE~d~l~~~~~~~Ll-------~~le~~-------------~~~~~lIl~~~----~~~kl~~~l~~r 187 (456)
..+++||++.+..+.+..+. ..+.+. .+.+.++++.| .+..+.+++++|
T Consensus 699 -------aw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~ 771 (2695)
T 4akg_A 699 -------AWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKS 771 (2695)
T ss_dssp -------CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTT
T ss_pred -------CEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhh
Confidence 18999999999998776663 333221 12344555556 346788899999
Q ss_pred ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------Hc------CCCHHHHHHHHHHHHH
Q psy12150 188 CSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVE-------TS------GGDMRRAITCLQSCAR 244 (456)
Q Consensus 188 ~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~-------~s------~gdlr~~~~~L~~~~~ 244 (456)
+..+.+..|+.+.+.+++... .|....+.....++. .. +..+|.+...|..+..
T Consensus 772 Fr~v~m~~Pd~~~i~ei~l~s---~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~ 838 (2695)
T 4akg_A 772 FREFSMKSPQSGTIAEMILQI---MGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSP 838 (2695)
T ss_dssp EEEEECCCCCHHHHHHHHHHH---HHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHH
T ss_pred eEEEEeeCCCHHHHHHHHHHh---cCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHH
Confidence 999999999998888875432 344444444333322 11 2367888777765543
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.29 E-value=1.7e-05 Score=95.51 Aligned_cols=184 Identities=15% Similarity=0.146 Sum_probs=116.2
Q ss_pred HHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCC-CCCCCC
Q psy12150 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF-NQDGKP 134 (456)
Q Consensus 56 ~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~ 134 (456)
-+..++..+. ++||+||+|||||.++..+...+. ...++.+|.+.......+...+........... +....|
T Consensus 1296 ll~~ll~~~~--pvLL~GptGtGKT~li~~~L~~l~----~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p 1369 (3245)
T 3vkg_A 1296 VLHAWLSEHR--PLILCGPPGSGKTMTLTSTLRAFP----DFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRP 1369 (3245)
T ss_dssp HHHHHHHTTC--CCEEESSTTSSHHHHHHHHGGGCT----TEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEE
T ss_pred HHHHHHHCCC--cEEEECCCCCCHHHHHHHHHHhCC----CCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCC
Confidence 3455566553 589999999999988876665542 235678899888887777766654322111100 000112
Q ss_pred C--CCcEEEEEcCCCCccH------HHHHHHHHHHHhcc------------CcceEEEEecCc-----ccccccccCCce
Q psy12150 135 C--PPFKIVILDEADSMTH------AAQAALRRTMEKET------------KSTRFCLICNYV-----SCIIQPLTSRCS 189 (456)
Q Consensus 135 ~--~~~~iviIDE~d~l~~------~~~~~Ll~~le~~~------------~~~~lIl~~~~~-----~kl~~~l~~r~~ 189 (456)
. +.+-|+||||++.-.. ...+.|+++++... ..+.+|.++|++ ..+.+++.+|+.
T Consensus 1370 ~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~ 1449 (3245)
T 3vkg_A 1370 TQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAP 1449 (3245)
T ss_dssp SSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCC
T ss_pred CcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhce
Confidence 1 2345889999976543 25677778887421 245577777754 457888999999
Q ss_pred EEEecCCCHHHHHHHHHHHHHHcC------CCCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHh
Q psy12150 190 KFRFKPLAENTMLTRLQYICEQES------VMCDFKALETLVET---------------SGGDMRRAITCLQSCARL 245 (456)
Q Consensus 190 ~i~f~~~~~~el~~~l~~~~~~~~------~~i~~~~l~~L~~~---------------s~gdlr~~~~~L~~~~~~ 245 (456)
.+.++.|+.+++..+...++..-- ..+.+...+..++. .--|+|.+.+.++-+..+
T Consensus 1450 vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~~ 1526 (3245)
T 3vkg_A 1450 ILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEA 1526 (3245)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHHh
Confidence 999999999999999776654311 11223333332221 123889888888876654
No 101
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.17 E-value=9.5e-05 Score=83.91 Aligned_cols=190 Identities=11% Similarity=0.089 Sum_probs=108.6
Q ss_pred ccCCCCcccccccHHHHHHHHHHHhcC--CCCeEEEECCCCCcHHHHHHHHHHHh--cCCccccceEEeeCCCCcChHHH
Q psy12150 38 KYRPKTIDDVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQL--FGDMYRERILELNASDDRGIQVI 113 (456)
Q Consensus 38 ky~P~~~~~ivg~~~~~~~l~~~l~~~--~~~~~Ll~G~~G~GKT~~a~~l~~~l--~~~~~~~~~~e~n~~~~~~~~~i 113 (456)
.--|.....++|++..++.|.+.+... ....+.|+|+.|+|||++|+.+++.. ....+...++-++.+.... ...
T Consensus 117 ~~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 195 (1249)
T 3sfz_A 117 GGVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK-SGL 195 (1249)
T ss_dssp TTCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH-HHH
T ss_pred CCCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc-hHH
Confidence 334666678999999999999999543 23338999999999999999887652 1222222344444443221 111
Q ss_pred HHHHHHHHHhhccCCC-CCCCC--------------C--CCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecC
Q psy12150 114 RDKVKTFAQQTASGFN-QDGKP--------------C--PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176 (456)
Q Consensus 114 ~~~l~~~~~~~~~~~~-~~~~~--------------~--~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~ 176 (456)
...+............ ....+ . ..+-+||+||++.. . .++...+...+|+++..
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~-------~~~~~~~~~~ilvTtR~ 266 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--W-------VLKAFDNQCQILLTTRD 266 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--H-------HHTTTCSSCEEEEEESS
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--H-------HHHhhcCCCEEEEEcCC
Confidence 1122222111100000 00000 0 12349999999863 1 12223456677777654
Q ss_pred cccccccccCCceEEEecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q psy12150 177 VSCIIQPLTSRCSKFRFKP-LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239 (456)
Q Consensus 177 ~~kl~~~l~~r~~~i~f~~-~~~~el~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L 239 (456)
.. +..........+...+ ++.++..+.+...+...... .++....|++.++|-+-.+...-
T Consensus 267 ~~-~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~i~~~~~glPLal~~~~ 328 (1249)
T 3sfz_A 267 KS-VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHSIIKECKGSPLVVSLIG 328 (1249)
T ss_dssp TT-TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHHHHHHTTTCHHHHHHHH
T ss_pred HH-HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHHHHHHhCCCHHHHHHHH
Confidence 32 2222223334677775 99999999988777433222 34567889999999876544333
No 102
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.16 E-value=5.1e-05 Score=78.75 Aligned_cols=180 Identities=17% Similarity=0.147 Sum_probs=100.5
Q ss_pred cccHHHHHHHHHHHhcC---CCCeEEEECCCCCcHHHHHHHHHH---HhcCCccccceEEeeCCCCc--ChHHHH-HHHH
Q psy12150 48 IEQQEVVSVLKKCLSGA---DLPHFLFYGPPGTGKTSTMIAACH---QLFGDMYRERILELNASDDR--GIQVIR-DKVK 118 (456)
Q Consensus 48 vg~~~~~~~l~~~l~~~---~~~~~Ll~G~~G~GKT~~a~~l~~---~l~~~~~~~~~~e~n~~~~~--~~~~i~-~~l~ 118 (456)
+|++..++.|.+++..+ ....+.|+|+.|+|||++|+.+++ .-....+. ..+-++.+... +...+. ..+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYD-SIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBS-EEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCC-cEEEEEECCCCCCCHHHHHHHHHH
Confidence 49999999999998654 233399999999999999999997 22222222 23334444432 222222 2222
Q ss_pred HHHHhhc-cCCCC-CCC------------CCCC-cEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCccccccc
Q psy12150 119 TFAQQTA-SGFNQ-DGK------------PCPP-FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183 (456)
Q Consensus 119 ~~~~~~~-~~~~~-~~~------------~~~~-~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~ 183 (456)
.+..... ..... ... -... +-+||+|+++.... . .+. .. ....+|+|+... .+...
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~--~-~~~----~~-~gs~ilvTTR~~-~v~~~ 280 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEET--I-RWA----QE-LRLRCLVTTRDV-EISNA 280 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHH--H-HHH----HH-TTCEEEEEESBG-GGGGG
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchh--h-ccc----cc-CCCEEEEEcCCH-HHHHH
Confidence 2211100 00000 000 0022 55999999987421 1 111 11 445666666542 22222
Q ss_pred ccCCceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Q psy12150 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESV-MCDFKALETLVETSGGDMRRAIT 237 (456)
Q Consensus 184 l~~r~~~i~f~~~~~~el~~~l~~~~~~~~~-~i~~~~l~~L~~~s~gdlr~~~~ 237 (456)
.......+++.+++.++..+++...+..... .-.++....|++.++|.+-.+..
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~ 335 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMM 335 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHH
Confidence 2112246899999999999988877432211 11234677899999998865543
No 103
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.96 E-value=4.6e-05 Score=66.80 Aligned_cols=68 Identities=13% Similarity=0.232 Sum_probs=45.6
Q ss_pred cEEEEEcCCC---CccHHHHHHHHHHHHhccCcceEEEEec--CcccccccccCC--ceEEEecCCCHHHHHHHHHH
Q psy12150 138 FKIVILDEAD---SMTHAAQAALRRTMEKETKSTRFCLICN--YVSCIIQPLTSR--CSKFRFKPLAENTMLTRLQY 207 (456)
Q Consensus 138 ~~iviIDE~d---~l~~~~~~~Ll~~le~~~~~~~lIl~~~--~~~kl~~~l~~r--~~~i~f~~~~~~el~~~l~~ 207 (456)
.+++++||++ .+.....+.+.+++++. ...+|+++. ....+...+.+| +..+++.+.+.+++...+..
T Consensus 100 p~llilDEigp~~~ld~~~~~~l~~~l~~~--~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~~ 174 (178)
T 1ye8_A 100 RKVIIIDEIGKMELFSKKFRDLVRQIMHDP--NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDILS 174 (178)
T ss_dssp TCEEEECCCSTTGGGCHHHHHHHHHHHTCT--TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHHH
T ss_pred CCEEEEeCCCCcccCCHHHHHHHHHHHhcC--CCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHHH
Confidence 3499999953 45566788888888873 332444553 334556667777 77899988887776665543
No 104
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.88 E-value=7.7e-06 Score=73.11 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=37.9
Q ss_pred EEEEEcCCCCccH---HHH--HHHHHHHHhcc-CcceEEEEecCcccccccccCCce-EEEecC
Q psy12150 139 KIVILDEADSMTH---AAQ--AALRRTMEKET-KSTRFCLICNYVSCIIQPLTSRCS-KFRFKP 195 (456)
Q Consensus 139 ~iviIDE~d~l~~---~~~--~~Ll~~le~~~-~~~~lIl~~~~~~kl~~~l~~r~~-~i~f~~ 195 (456)
.+|||||++.+.+ +.. ..++..++... ....+|++++.+..+..+++.|+. .+++.+
T Consensus 89 ~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~ 152 (199)
T 2r2a_A 89 SIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIAS 152 (199)
T ss_dssp CEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEE
T ss_pred eEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcC
Confidence 3999999999832 111 12344444332 345678888888888888998876 666665
No 105
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.82 E-value=5.5e-05 Score=63.49 Aligned_cols=123 Identities=9% Similarity=-0.004 Sum_probs=77.8
Q ss_pred HHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCc-cccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCCCCC
Q psy12150 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135 (456)
Q Consensus 57 l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~-~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 135 (456)
+.+.++++-.|.|+|||++-......+.++.+.+.... ...+++.+++ ..+..+.+......+.++
T Consensus 9 l~~~l~~~~~pvyll~G~E~~l~~~~~~~i~~~~~~~~~~e~~~~~~~~-----~~~~~~l~~~~~s~slF~-------- 75 (140)
T 1jql_B 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-----NTDWNAIFSLCQAMSLFA-------- 75 (140)
T ss_dssp HHHHHHHCCCSEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEECCCCST-----TCCHHHHHHHHHCCCTTC--------
T ss_pred HHHHHhccCCceEEEEcCcHHHHHHHHHHHHHHHHHCCCcceeEEEecC-----CCCHHHHHHHHhcCCCCC--------
Confidence 34455544334499999997777777777776654321 1112333333 122334444444444443
Q ss_pred CCcEEEEEcCCCC-ccHHHHHHHHHHHHhccCcceEEEEecCc------ccccccccCCceEEEe
Q psy12150 136 PPFKIVILDEADS-MTHAAQAALRRTMEKETKSTRFCLICNYV------SCIIQPLTSRCSKFRF 193 (456)
Q Consensus 136 ~~~~iviIDE~d~-l~~~~~~~Ll~~le~~~~~~~lIl~~~~~------~kl~~~l~~r~~~i~f 193 (456)
++++|+|.+++. +..+..+.|..|++++++.+++|++.... .++.+++.+.+..++|
T Consensus 76 -~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~~~~~lvi~~~kld~~~~~~k~~k~l~k~g~~v~~ 139 (140)
T 1jql_B 76 -SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139 (140)
T ss_dssp -CCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCEEEEC
T ss_pred -CCEEEEEECCCCCCChHHHHHHHHHHhcCCCCEEEEEEeCCcChhHHhhHHHHHHHhCeEEEEe
Confidence 889999999765 55667788999999999899988887431 3566777676666654
No 106
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.76 E-value=0.00053 Score=74.85 Aligned_cols=153 Identities=13% Similarity=0.151 Sum_probs=81.6
Q ss_pred ccccHHHHHHHHHHHhcC-CCCeEEEECCCCCcHHHHHHHHHHHh-cCCccccceEEeeCCCCcChHHHHHHHHHHHHhh
Q psy12150 47 VIEQQEVVSVLKKCLSGA-DLPHFLFYGPPGTGKTSTMIAACHQL-FGDMYRERILELNASDDRGIQVIRDKVKTFAQQT 124 (456)
Q Consensus 47 ivg~~~~~~~l~~~l~~~-~~~~~Ll~G~~G~GKT~~a~~l~~~l-~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~ 124 (456)
.+|++..++.|.+++... ..+.+.|+|+.|+|||++|+.+++.. ....+...++-++.+.......+...+.......
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 399999999999998763 33349999999999999999998631 0111222233334443333333222222211110
Q ss_pred ccCCC-CCC---------------------CCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecCcccccc
Q psy12150 125 ASGFN-QDG---------------------KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQ 182 (456)
Q Consensus 125 ~~~~~-~~~---------------------~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~ 182 (456)
..... ... .....+-+||+||++. .+..+ .+ +..+.+|+++....-. .
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe----~f---~pGSRILVTTRd~~Va-~ 279 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWN----AF---NLSCKILLTTRFKQVT-D 279 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHH----HH---HSSCCEEEECSCSHHH-H
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHH----hh---CCCeEEEEeccChHHH-H
Confidence 00000 000 0001333999999988 22222 22 2456677776543211 1
Q ss_pred ccc-CCceEEEec----CCCHHHHHHHHHHHH
Q psy12150 183 PLT-SRCSKFRFK----PLAENTMLTRLQYIC 209 (456)
Q Consensus 183 ~l~-~r~~~i~f~----~~~~~el~~~l~~~~ 209 (456)
.+. .+...+.++ +++.++..+++...+
T Consensus 280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~ 311 (1221)
T 1vt4_I 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311 (1221)
T ss_dssp HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH
T ss_pred hcCCCeEEEecCccccCCcCHHHHHHHHHHHc
Confidence 111 112244444 789999999888774
No 107
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.68 E-value=0.0007 Score=81.83 Aligned_cols=170 Identities=16% Similarity=0.124 Sum_probs=115.3
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCC
Q psy12150 52 EVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131 (456)
Q Consensus 52 ~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 131 (456)
+....+-.++..+. +..+.||+|||||.+++.+++.++. .++.+||++......+...+..+.+.+.
T Consensus 592 rcy~tl~~Al~~~~--gg~~~GPaGtGKTet~k~La~~lgr-----~~~vfnC~~~~d~~~~g~i~~G~~~~Ga------ 658 (3245)
T 3vkg_A 592 RCYLTLTQALESRM--GGNPFGPAGTGKTETVKALGSQLGR-----FVLVFCCDEGFDLQAMSRIFVGLCQCGA------ 658 (3245)
T ss_dssp HHHHHHHHHHHTTC--EEEEECSTTSSHHHHHHHHHHHTTC-----CEEEEECSSCCCHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHhCC-----eEEEEeCCCCCCHHHHHHHHhhHhhcCc------
Confidence 33455666666443 2578899999999999999999864 5678899988777777666666554432
Q ss_pred CCCCCCcEEEEEcCCCCccHHHHHHHHHHHH-------hc--------------cCcceEEEEecC----cccccccccC
Q psy12150 132 GKPCPPFKIVILDEADSMTHAAQAALRRTME-------KE--------------TKSTRFCLICNY----VSCIIQPLTS 186 (456)
Q Consensus 132 ~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le-------~~--------------~~~~~lIl~~~~----~~kl~~~l~~ 186 (456)
-.++||++++..+....+...+. +. .+.+.++++.|+ +..+.+.+++
T Consensus 659 --------W~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~ 730 (3245)
T 3vkg_A 659 --------WGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK 730 (3245)
T ss_dssp --------EEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT
T ss_pred --------EEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh
Confidence 67999999999887665544332 11 123445555563 4678889999
Q ss_pred CceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH---HHc----------CCCHHHHHHHHHHHHHh
Q psy12150 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLV---ETS----------GGDMRRAITCLQSCARL 245 (456)
Q Consensus 187 r~~~i~f~~~~~~el~~~l~~~~~~~~~~i~~~~l~~L~---~~s----------~gdlr~~~~~L~~~~~~ 245 (456)
++..+.+..|+.+.+.+++- ..+|..-.......++ +.+ +-.+|.+...|..+...
T Consensus 731 lFr~v~m~~Pd~~~i~ei~L---~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~l 799 (3245)
T 3vkg_A 731 LFRSMAMIKPDREMIAQVML---YSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGI 799 (3245)
T ss_dssp TEEEEECCSCCHHHHHHHHH---HTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred hcEEEEEeCCCHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Confidence 99999999999988887753 3456543333333322 111 23588888888766544
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.65 E-value=6e-06 Score=72.96 Aligned_cols=27 Identities=11% Similarity=0.230 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHh
Q psy12150 137 PFKIVILDEADSMTHAAQAALRRTMEK 163 (456)
Q Consensus 137 ~~~iviIDE~d~l~~~~~~~Ll~~le~ 163 (456)
+..+|+|||++++.++..+.|....+.
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~ 102 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDR 102 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHT
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHC
Confidence 467999999999977767666666654
No 109
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.53 E-value=0.0004 Score=66.13 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
++|+||||+|||+++..++..
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHh
Confidence 899999999999999999987
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.52 E-value=0.00012 Score=66.34 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
++++|++|+||||++..++..+..
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~ 38 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEY 38 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh
Confidence 899999999999999888877643
No 111
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.41 E-value=0.00028 Score=73.32 Aligned_cols=117 Identities=20% Similarity=0.257 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHH-------HHHHHh
Q psy12150 51 QEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKV-------KTFAQQ 123 (456)
Q Consensus 51 ~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l-------~~~~~~ 123 (456)
+.....+...+.. +.++|+|+||||||+++.+++..+..... .+.-.. ........+.+.+ ..+...
T Consensus 192 ~~Q~~Av~~~~~~---~~~~I~G~pGTGKTt~i~~l~~~l~~~g~--~Vl~~A-pT~~Aa~~L~e~~~~~a~Tih~ll~~ 265 (574)
T 3e1s_A 192 EEQASVLDQLAGH---RLVVLTGGPGTGKSTTTKAVADLAESLGL--EVGLCA-PTGKAARRLGEVTGRTASTVHRLLGY 265 (574)
T ss_dssp HHHHHHHHHHTTC---SEEEEECCTTSCHHHHHHHHHHHHHHTTC--CEEEEE-SSHHHHHHHHHHHTSCEEEHHHHTTE
T ss_pred HHHHHHHHHHHhC---CEEEEEcCCCCCHHHHHHHHHHHHHhcCC--eEEEec-CcHHHHHHhHhhhcccHHHHHHHHcC
Confidence 4445555555432 35999999999999999999987654332 333322 2212222222211 111110
Q ss_pred hccCCCCCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecC
Q psy12150 124 TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176 (456)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~ 176 (456)
....+........++++|||||+..+.......|++.+. ....+|++++.
T Consensus 266 ~~~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD~ 315 (574)
T 3e1s_A 266 GPQGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGDT 315 (574)
T ss_dssp ETTEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEECT
T ss_pred CcchhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEecc
Confidence 000000000111256799999999998887777765543 45677777764
No 112
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.17 E-value=0.0015 Score=57.59 Aligned_cols=98 Identities=12% Similarity=0.161 Sum_probs=58.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCC-CCcChHHH-----------------------------HHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS-DDRGIQVI-----------------------------RDKV 117 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~-~~~~~~~i-----------------------------~~~l 117 (456)
.+++|+++|.||||+|-.++-...+...+.-++.+... ...+...+ ...+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 49999999999999999888776555454444433222 11111111 1111
Q ss_pred HHHHHhhccCCCCCCCCCCCcEEEEEcCCC------CccHHHHHHHHHHHHhccCcceEEEEecCc
Q psy12150 118 KTFAQQTASGFNQDGKPCPPFKIVILDEAD------SMTHAAQAALRRTMEKETKSTRFCLICNYV 177 (456)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~iviIDE~d------~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~ 177 (456)
......... ..+++||+||+. .+.. +.+++++.+.+...-+|++++..
T Consensus 110 ~~a~~~l~~---------~~yDlvILDEi~~al~~g~l~~---~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 110 QHGKRMLAD---------PLLDMVVLDELTYMVAYDYLPL---EEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHTTC---------TTCSEEEEETHHHHHHTTSSCH---HHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHhc---------CCCCEEEEeCCCccccCCCCCH---HHHHHHHHhCcCCCEEEEECCCC
Confidence 111111111 266799999983 3433 45777888878888888898864
No 113
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.02 E-value=0.0032 Score=65.89 Aligned_cols=104 Identities=20% Similarity=0.269 Sum_probs=56.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCC--ccccceEEeeCCCCcChHHHHHHHHHHHHhhc-----------------cCC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGD--MYRERILELNASDDRGIQVIRDKVKTFAQQTA-----------------SGF 128 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~--~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~-----------------~~~ 128 (456)
.++++|+||||||+++..+...+... .....+.-. +........+.+.+........ ...
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~-APTg~AA~~L~e~~~~~~~~l~l~~~~~~~~~~~~~Tih~ll 244 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA-APTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLL 244 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE-BSSHHHHHHHHHHHTHHHHHSSCCSCCCCSCSCCCBTTTSCC
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE-eCChhHHHHHHHHHHHHHhcCCCCHHHHhccchhhhhhHhhh
Confidence 49999999999999999888776421 111122222 2221222223333222111000 000
Q ss_pred C----------CCCCCCCCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecC
Q psy12150 129 N----------QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176 (456)
Q Consensus 129 ~----------~~~~~~~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~ 176 (456)
. ....+ -+.++|||||++.+.......|++.+ +....+|++++.
T Consensus 245 ~~~~~~~~~~~~~~~~-l~~d~lIIDEAsml~~~~~~~Ll~~l---~~~~~liLvGD~ 298 (608)
T 1w36_D 245 GAQPGSQRLRHHAGNP-LHLDVLVVDEASMIDLPMMSRLIDAL---PDHARVIFLGDR 298 (608)
T ss_dssp -----------CTTSC-CSCSEEEECSGGGCBHHHHHHHHHTC---CTTCEEEEEECT
T ss_pred ccCCCchHHHhccCCC-CCCCEEEEechhhCCHHHHHHHHHhC---CCCCEEEEEcch
Confidence 0 00111 14569999999988876666665544 455678888764
No 114
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.99 E-value=0.0035 Score=57.31 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy12150 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
++.....+..+++.+ .++++||+|+|||.++..++..+
T Consensus 95 ~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 344445555555542 48999999999999998888775
No 115
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.99 E-value=0.002 Score=74.97 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=26.8
Q ss_pred HHHHHh-cCCCC--eEEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 57 LKKCLS-GADLP--HFLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 57 l~~~l~-~~~~~--~~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
|...+. +|-.+ +++|+||||||||+++.+++.+....
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~ 1454 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 1454 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 444554 33222 39999999999999999998876543
No 116
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.93 E-value=0.00075 Score=60.42 Aligned_cols=101 Identities=9% Similarity=0.043 Sum_probs=47.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCC--cChHHHHHHHHHHHHhhccCCCC-CC--CCCCCcEEEEE
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD--RGIQVIRDKVKTFAQQTASGFNQ-DG--KPCPPFKIVIL 143 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~--~~~~~i~~~l~~~~~~~~~~~~~-~~--~~~~~~~iviI 143 (456)
++++|+.|+|||+.+...+........ .++-+...-. .+...+...+.. .......... .. ....++.+|+|
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~--kVli~k~~~d~R~ge~~i~s~~g~-~~~a~~~~~~~~~~~~~~~~~dvViI 107 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQ--HAIVFKPCIDNRYSEEDVVSHNGL-KVKAVPVSASKDIFKHITEEMDVIAI 107 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTC--CEEEEECC------------------CCEEECSSGGGGGGGCCSSCCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCC--EEEEEEeccCCcchHHHHHhhcCC-eeEEeecCCHHHHHHHHhcCCCEEEE
Confidence 789999999999988877776544333 3333332211 111222222110 0000000000 00 00013569999
Q ss_pred cCCCCccHHHHHHHHHHHHhccCcceEEEEec
Q psy12150 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICN 175 (456)
Q Consensus 144 DE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~ 175 (456)
||+++++.+..+.+.. +.+. ...+|+++-
T Consensus 108 DEaQF~~~~~V~~l~~-l~~~--~~~Vi~~Gl 136 (214)
T 2j9r_A 108 DEVQFFDGDIVEVVQV-LANR--GYRVIVAGL 136 (214)
T ss_dssp CCGGGSCTTHHHHHHH-HHHT--TCEEEEEEC
T ss_pred ECcccCCHHHHHHHHH-HhhC--CCEEEEEec
Confidence 9999998776654444 3332 344555553
No 117
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.90 E-value=0.0014 Score=57.82 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++++||.|+|||+.+..++..+.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~ 33 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAK 33 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 89999999999999888877764
No 118
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.88 E-value=0.0022 Score=55.36 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACH 88 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~ 88 (456)
++|.|+||+||||+++.+++
T Consensus 5 I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 89999999999999999998
No 119
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.87 E-value=0.011 Score=53.67 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=31.8
Q ss_pred HHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCc----cccceEEeeCCC
Q psy12150 57 LKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDM----YRERILELNASD 106 (456)
Q Consensus 57 l~~~l~~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~~~----~~~~~~e~n~~~ 106 (456)
|...+.++-.+. ++|+||+|+|||+++..++....... ....++.++...
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 344444443333 99999999999999999998632211 123456666554
No 120
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.86 E-value=0.0056 Score=59.41 Aligned_cols=49 Identities=14% Similarity=0.109 Sum_probs=32.0
Q ss_pred HHHHHHh-cCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCC
Q psy12150 56 VLKKCLS-GADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD 106 (456)
Q Consensus 56 ~l~~~l~-~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~ 106 (456)
.|...+. +|-++. ++|+||||+|||+++..++..+.... ..+++++...
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~ 99 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEH 99 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEeccc
Confidence 4555555 343333 99999999999999999998764221 1344555443
No 121
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.86 E-value=0.0016 Score=57.31 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=24.2
Q ss_pred EEEECCCCCcHH-HHHHHHHHHhcCCccccceEEeeC
Q psy12150 69 FLFYGPPGTGKT-STMIAACHQLFGDMYRERILELNA 104 (456)
Q Consensus 69 ~Ll~G~~G~GKT-~~a~~l~~~l~~~~~~~~~~e~n~ 104 (456)
+++|||.|+||| .+++++.+..... ..++.+.+
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~---~kvl~~kp 56 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQ---YKCLVIKY 56 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEcc
Confidence 899999999999 7888887765443 24444443
No 122
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.82 E-value=0.0031 Score=55.53 Aligned_cols=71 Identities=14% Similarity=0.201 Sum_probs=42.5
Q ss_pred CcEEEEEcCCCCc---cHHHHHHHHHHHHhccCcceEE--EE-ecCc-ccccccccC--CceEEEecCCCHHHHHHHHHH
Q psy12150 137 PFKIVILDEADSM---THAAQAALRRTMEKETKSTRFC--LI-CNYV-SCIIQPLTS--RCSKFRFKPLAENTMLTRLQY 207 (456)
Q Consensus 137 ~~~iviIDE~d~l---~~~~~~~Ll~~le~~~~~~~lI--l~-~~~~-~kl~~~l~~--r~~~i~f~~~~~~el~~~l~~ 207 (456)
+..++|+||++.+ .....+.|.++++.+. ++++ ++ +.+. ..+.+.+.. .+.++++.+-+.+.+..-+..
T Consensus 105 ~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~--~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i~~ 182 (189)
T 2i3b_A 105 GQRVCVIDEIGKMELFSQLFIQAVRQTLSTPG--TIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDIVT 182 (189)
T ss_dssp CCCCEEECCCSTTTTTCSHHHHHHHHHHHCSS--CCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHHHHH
T ss_pred CCCEEEEeCCCccccccHHHHHHHHHHHhCCC--cEEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHHHHH
Confidence 4569999998666 3346777788887543 3332 12 1222 234455544 356888888777776666544
Q ss_pred HH
Q psy12150 208 IC 209 (456)
Q Consensus 208 ~~ 209 (456)
.+
T Consensus 183 ~~ 184 (189)
T 2i3b_A 183 CV 184 (189)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 123
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.78 E-value=0.0086 Score=53.99 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=23.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCcc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGDMY 95 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~~~ 95 (456)
++++.|++|+|||+++-.++..+.....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~ 35 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGV 35 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCC
Confidence 3999999999999999999888765444
No 124
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.76 E-value=0.005 Score=59.78 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=25.5
Q ss_pred HHHHHh-cCCCCe--EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 57 LKKCLS-GADLPH--FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 57 l~~~l~-~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
|...+. +|-++. ++|+||||+|||+++..++..+.
T Consensus 49 LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 49 LDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp HHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444454 333333 99999999999999999887653
No 125
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.75 E-value=0.015 Score=51.87 Aligned_cols=45 Identities=24% Similarity=0.383 Sum_probs=29.8
Q ss_pred HHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCC
Q psy12150 57 LKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD 106 (456)
Q Consensus 57 l~~~l~~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~ 106 (456)
|.+.+.++-.+. ++|+||+|+|||+++..++. .. ...++.++...
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~----~~~v~~i~~~~ 55 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LS----GKKVAYVDTEG 55 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HH----CSEEEEEESSC
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-Hc----CCcEEEEECCC
Confidence 334444333333 99999999999999999987 21 12455565544
No 126
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.74 E-value=0.0089 Score=58.10 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=25.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~ 104 (456)
++|+|+||+|||+++..++..+..... .++.++.
T Consensus 66 i~I~G~pGsGKTtLal~la~~~~~~g~--~vlyid~ 99 (356)
T 1u94_A 66 VEIYGPESSGKTTLTLQVIAAAQREGK--TCAFIDA 99 (356)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC--eEEEEeC
Confidence 999999999999999998876542211 3445554
No 127
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.74 E-value=0.0074 Score=54.49 Aligned_cols=101 Identities=8% Similarity=0.119 Sum_probs=48.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCC-C-CCCCCcEEEEEcCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD-G-KPCPPFKIVILDEA 146 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~-~-~~~~~~~iviIDE~ 146 (456)
++++|+.|+|||+.+-..+........+.-++........+ ..+...+.. ........... . ....++.+|+|||+
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg-~~i~sr~G~-~~~a~~i~~~~di~~~~~~~dvViIDEa 99 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRN-TMEALPACLLRDVAQEALGVAVIGIDEG 99 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-------------CEEEEESSGGGGHHHHTTCSEEEESSG
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch-HHHHhhcCC-eeEEEecCCHHHHHHHhccCCEEEEEch
Confidence 89999999999987766665554433322222211211112 222222110 00000000000 0 00014569999999
Q ss_pred CCccHHHHHHHHHHHHhccCcceEEEEec
Q psy12150 147 DSMTHAAQAALRRTMEKETKSTRFCLICN 175 (456)
Q Consensus 147 d~l~~~~~~~Ll~~le~~~~~~~lIl~~~ 175 (456)
+++.+ ...+.+.+.+. ...+|+++-
T Consensus 100 QF~~~--v~el~~~l~~~--gi~VI~~GL 124 (234)
T 2orv_A 100 QFFPD--IVEFCEAMANA--GKTVIVAAL 124 (234)
T ss_dssp GGCTT--HHHHHHHHHHT--TCEEEEECC
T ss_pred hhhhh--HHHHHHHHHhC--CCEEEEEec
Confidence 99974 66777777763 345555553
No 128
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.72 E-value=0.033 Score=57.17 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=47.1
Q ss_pred CcEEEEEcCCCCccH----HHHHHHHHHHHhcc-CcceEEEEecCcc--cccccccCCce-EEEecCCCHHHHHHHHH
Q psy12150 137 PFKIVILDEADSMTH----AAQAALRRTMEKET-KSTRFCLICNYVS--CIIQPLTSRCS-KFRFKPLAENTMLTRLQ 206 (456)
Q Consensus 137 ~~~iviIDE~d~l~~----~~~~~Ll~~le~~~-~~~~lIl~~~~~~--kl~~~l~~r~~-~i~f~~~~~~el~~~l~ 206 (456)
++-+|||||++.+.. +..+.|.++..... ..+.+|+++..+. .+...+++.+. ++.|..-+..+...++.
T Consensus 343 P~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 343 PTIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp CEEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred CcEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 456999999998753 33445555555544 3455777777665 45556776665 78888888888877664
No 129
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.68 E-value=0.02 Score=57.06 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=23.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCcc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMY 95 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~ 95 (456)
+++.|++|+||||++..++..+.....
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~~G~ 129 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQKRGY 129 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTC
T ss_pred EEEECcCCCCHHHHHHHHHHHHHHCCC
Confidence 999999999999999999988765433
No 130
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.65 E-value=0.01 Score=54.90 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.++|.|+||+||||+++.+++.+.
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999853
No 131
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.60 E-value=0.006 Score=54.89 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
++|+||+|+|||++++.++..+
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998655
No 132
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.56 E-value=0.016 Score=56.55 Aligned_cols=37 Identities=30% Similarity=0.308 Sum_probs=26.4
Q ss_pred HHHHHHHh-cCCCCe--EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 55 SVLKKCLS-GADLPH--FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 55 ~~l~~~l~-~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
..|...+. +|-++. ++|+|+||+|||+++..++..+.
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHH
Confidence 34555554 333222 99999999999999999887653
No 133
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.55 E-value=0.016 Score=52.62 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
++|+||||+|||+++..++...
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999988877654
No 134
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.53 E-value=0.041 Score=49.00 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++|.|+||+||||+++.+++.++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998864
No 135
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.52 E-value=0.022 Score=55.16 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|+||+|+|||+++..++...
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999875
No 136
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.51 E-value=0.027 Score=56.07 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=23.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCcc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMY 95 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~ 95 (456)
+++.|++|+||||++..++..+.....
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~G~ 126 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKRGY 126 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 899999999999999999988754433
No 137
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.47 E-value=0.025 Score=50.66 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||+|+||||+++.++..+
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999854
No 138
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.46 E-value=0.004 Score=71.65 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+++|||||||||+++.+++.+-.
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~~ 1107 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAAQ 1107 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHhh
Confidence 99999999999999999987653
No 139
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.43 E-value=0.013 Score=52.16 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 65 DLPHFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 65 ~~~~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
..+.++|.|++|+|||+++.++.....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345699999999999999999998653
No 140
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.41 E-value=0.015 Score=55.06 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=32.1
Q ss_pred HHHHHHh----cCCCCe-EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCC
Q psy12150 56 VLKKCLS----GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD 106 (456)
Q Consensus 56 ~l~~~l~----~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~ 106 (456)
.|-..+. +|-++. ++++||||+|||+++..++...........+++++...
T Consensus 13 ~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 13 MMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp HHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred HHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 4555565 444444 89999999999999887776553210112455555543
No 141
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.29 E-value=0.0057 Score=59.91 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
++|+||+|+||||+++.++....+
T Consensus 172 i~l~G~~GsGKSTl~~~l~~~~~g 195 (377)
T 1svm_A 172 WLFKGPIDSGKTTLAAALLELCGG 195 (377)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhhcCC
Confidence 999999999999999999987643
No 142
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.27 E-value=0.03 Score=55.20 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=26.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCc----cccceEEeeCCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDM----YRERILELNASD 106 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~----~~~~~~e~n~~~ 106 (456)
+.|+||+|+|||+++..++-....+. ....+++++...
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 99999999999999998764432211 123466666654
No 143
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.17 E-value=0.0057 Score=60.88 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
++|.|+||+||||+++.+++.+
T Consensus 261 Iil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8999999999999999999876
No 144
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.13 E-value=0.075 Score=48.09 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=16.5
Q ss_pred eEEEECCCCCcHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAAC 87 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~ 87 (456)
.+++.||+|+|||++...+.
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHHH
Confidence 48999999999998765543
No 145
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.10 E-value=0.004 Score=54.17 Aligned_cols=26 Identities=23% Similarity=0.186 Sum_probs=23.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
+.++|.|++|+||||+++.+++.++.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45999999999999999999998754
No 146
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.10 E-value=0.0032 Score=54.38 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=22.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.++|+|++|+||||+++.+++.+.
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 389999999999999999999874
No 147
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.09 E-value=0.005 Score=59.42 Aligned_cols=39 Identities=18% Similarity=0.389 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 54 VSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 54 ~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
+..+...++.+..++++|.|++|+||||+++++++.+..
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 344444455676677999999999999999999998753
No 148
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.07 E-value=0.004 Score=54.33 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=23.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
.++|.|++|+||||+++.+++.+...
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 30 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRKE 30 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999999999988643
No 149
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.01 E-value=0.0087 Score=53.12 Aligned_cols=38 Identities=21% Similarity=0.363 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy12150 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
++.....+..++++ .++++.+|+|+|||.++..++...
T Consensus 35 ~~~Q~~~i~~~~~~---~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 35 RPYQMEVAQPALEG---KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CHHHHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcC---CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 34444445555543 358999999999999887766543
No 150
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.99 E-value=0.0041 Score=53.24 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=22.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.++|.|++|+||||+++.+++.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~ 27 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKY 27 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4799999999999999999998753
No 151
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.86 E-value=0.0054 Score=53.51 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=23.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
.++|.|+||+||||+++.+++.+...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 28 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQ 28 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999999988643
No 152
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.85 E-value=0.046 Score=55.55 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=42.8
Q ss_pred CcEEEEEcCCCCccHHH----HHHHHHHHHhcc-CcceEEEEecCcc-c-ccccccCCce-EEEecCCCHHHHHHHHH
Q psy12150 137 PFKIVILDEADSMTHAA----QAALRRTMEKET-KSTRFCLICNYVS-C-IIQPLTSRCS-KFRFKPLAENTMLTRLQ 206 (456)
Q Consensus 137 ~~~iviIDE~d~l~~~~----~~~Ll~~le~~~-~~~~lIl~~~~~~-k-l~~~l~~r~~-~i~f~~~~~~el~~~l~ 206 (456)
++-+|+|||+..+.... .+.+.++..... ..+.+|+++..+. . +...+++.+. ++-|.--+..+.+.++.
T Consensus 297 P~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp CEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHS
T ss_pred CcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcC
Confidence 34589999997665422 223333333333 2456677777665 3 4444665554 78888888888877664
No 153
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.83 E-value=0.0062 Score=52.76 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.++|+|++|+||||+++.+++.+.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 3499999999999999999999874
No 154
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.81 E-value=0.0046 Score=61.50 Aligned_cols=93 Identities=17% Similarity=0.145 Sum_probs=50.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHH-------------HHhhccCCCCCCCCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF-------------AQQTASGFNQDGKPC 135 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~-------------~~~~~~~~~~~~~~~ 135 (456)
.++.|+||+|||+++..+++. . ...-+.+.. ...+++++.+... ....... ...+.
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~~--~-----~~lVlTpT~-~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~---~~~~~ 232 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVNF--E-----EDLILVPGR-QAAEMIRRRANASGIIVATKDNVRTVDSFLMNY---GKGAR 232 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCCT--T-----TCEEEESCH-HHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTT---TSSCC
T ss_pred EEEEcCCCCCHHHHHHHHhcc--C-----CeEEEeCCH-HHHHHHHHHhhhcCccccccceEEEeHHhhcCC---CCCCC
Confidence 899999999999999877642 1 222222221 1223333332110 0000000 00000
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHhccCcceEEEEecC
Q psy12150 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176 (456)
Q Consensus 136 ~~~~iviIDE~d~l~~~~~~~Ll~~le~~~~~~~lIl~~~~ 176 (456)
.+.++|||||+..+.......++..+. . ..+|+.++.
T Consensus 233 ~~~d~liiDE~sm~~~~~l~~l~~~~~---~-~~vilvGD~ 269 (446)
T 3vkw_A 233 CQFKRLFIDEGLMLHTGCVNFLVEMSL---C-DIAYVYGDT 269 (446)
T ss_dssp CCCSEEEEETGGGSCHHHHHHHHHHTT---C-SEEEEEECT
T ss_pred CcCCEEEEeCcccCCHHHHHHHHHhCC---C-CEEEEecCc
Confidence 135799999999988877776665432 2 566677653
No 155
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.81 E-value=0.0064 Score=52.00 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=23.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 66 LPHFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 66 ~~~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
+.+++|.|++|+||||+++.+++.++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345999999999999999999998753
No 156
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.80 E-value=0.033 Score=64.18 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=26.4
Q ss_pred HHHHHHh-cCCCCe--EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 56 VLKKCLS-GADLPH--FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 56 ~l~~~l~-~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.|.+.+. +|-.+. ++|+||||+|||+++..++..+.
T Consensus 719 eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 4444454 333333 99999999999999999988764
No 157
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.73 E-value=0.006 Score=52.34 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.+.|.|++|+||||+++.++..+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999864
No 158
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.72 E-value=0.0077 Score=53.22 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=23.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
..++|.|++|+||||+++.+++.++.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 35999999999999999999998743
No 159
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.72 E-value=0.044 Score=53.13 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.++|.||+|+||||++++++..+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhccc
Confidence 499999999999999999988764
No 160
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.70 E-value=0.035 Score=52.70 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
+++.|++|+||||++..++..+..
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHHHHHh
Confidence 899999999999999999987753
No 161
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.68 E-value=0.0067 Score=52.30 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
..++|.|+||+||||+++.+++.+.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999999874
No 162
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=95.66 E-value=0.017 Score=60.11 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=28.7
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
|...+..+.+.+..+. .++++.+|+|+|||.++-.++..+.
T Consensus 183 Q~~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~l~ 223 (590)
T 3h1t_A 183 QQIAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWKLW 223 (590)
T ss_dssp HHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHHHH
Confidence 3444555555555443 4589999999999999888777663
No 163
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.64 E-value=0.012 Score=55.35 Aligned_cols=22 Identities=45% Similarity=0.643 Sum_probs=21.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
++|.||||+||||+++.+++.+
T Consensus 36 ivl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999876
No 164
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.63 E-value=0.032 Score=52.51 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
++|.|+||+||||+++.+++.+
T Consensus 5 I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999999863
No 165
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.58 E-value=0.007 Score=51.69 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.++|.|+||+||||+++.+ +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 3789999999999999999 665
No 166
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.57 E-value=0.03 Score=65.44 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
++++||||||||+++.+++.+...
T Consensus 1084 vll~G~~GtGKT~la~~~~~ea~k 1107 (2050)
T 3cmu_A 1084 VEIYGPESSGKTTLTLQVIAAAQR 1107 (2050)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999876543
No 167
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.56 E-value=0.031 Score=51.71 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++|.||+|+||||+++.++..+.
T Consensus 28 v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 28 ILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp EEEECSTTCSHHHHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHhCC
Confidence 99999999999999999998653
No 168
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.55 E-value=0.012 Score=53.82 Aligned_cols=24 Identities=25% Similarity=0.605 Sum_probs=22.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.++|.|+||+||||+++.+++.++
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 399999999999999999998873
No 169
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.48 E-value=0.0086 Score=52.01 Aligned_cols=23 Identities=35% Similarity=0.681 Sum_probs=21.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++|.|++|+||||+++.+++.++
T Consensus 7 I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998874
No 170
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.47 E-value=0.0097 Score=53.13 Aligned_cols=25 Identities=8% Similarity=0.174 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHH
Q psy12150 137 PFKIVILDEADSMTHAAQAALRRTM 161 (456)
Q Consensus 137 ~~~iviIDE~d~l~~~~~~~Ll~~l 161 (456)
+..+|+|||+++++++..+.+.++.
T Consensus 101 ~~dvV~IDEaQFf~~~~v~~l~~la 125 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDEIVSIVEKLS 125 (219)
T ss_dssp TCSEEEECCGGGSCTHHHHHHHHHH
T ss_pred CCCEEEEechhcCCHHHHHHHHHHH
Confidence 4459999999999987777776665
No 171
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.47 E-value=0.024 Score=59.77 Aligned_cols=40 Identities=30% Similarity=0.389 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++...+.+..++... +..||+||||||||+++-.+...+.
T Consensus 191 N~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 191 DTSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp CHHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHH
Confidence 567777888887643 3489999999999998776666554
No 172
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.47 E-value=0.01 Score=53.22 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=22.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
..++|.|+||+||||+++.+++.+.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3489999999999999999999874
No 173
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.47 E-value=0.0076 Score=52.63 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=21.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++|.|+||+||||+++.+++.++
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999874
No 174
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.44 E-value=0.009 Score=51.89 Aligned_cols=25 Identities=24% Similarity=0.293 Sum_probs=22.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.++|.|+||+||||+++.+++.++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~ 28 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGV 28 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3899999999999999999998753
No 175
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.43 E-value=0.0096 Score=54.94 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.++|.||+|+||||+++.+++.+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~ 27 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGW 27 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCC
Confidence 3789999999999999999998753
No 176
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.42 E-value=0.0096 Score=50.97 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=22.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.++|.|++|+||||+++.+++.++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999874
No 177
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.40 E-value=0.0095 Score=51.75 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||+|+||||+++.++..+
T Consensus 8 i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 8999999999999999999865
No 178
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.39 E-value=0.12 Score=45.95 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=17.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
++++.+|+|+|||.++...+-.
T Consensus 53 ~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 53 DVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEECCCCCchhhhhhHHHHH
Confidence 4999999999999876655443
No 179
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.38 E-value=0.19 Score=47.69 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCC
Q psy12150 55 SVLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (456)
Q Consensus 55 ~~l~~~l~~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~ 105 (456)
..|.+.+ +|-.+. ++|.|+||+|||+++..++....... ..++.++..
T Consensus 56 ~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE 105 (315)
T 3bh0_A 56 TELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE 105 (315)
T ss_dssp HHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS
T ss_pred HHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC
Confidence 3444555 433333 99999999999999999987654332 256666554
No 180
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.37 E-value=0.21 Score=41.51 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+++.|++|+|||+++.++...-
T Consensus 6 i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999988653
No 181
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.35 E-value=0.012 Score=51.99 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.+.|.||+|+||||+++.++..+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 49999999999999999999887
No 182
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.35 E-value=0.014 Score=53.82 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=21.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++|.|+||+||||+++.+++.+.
T Consensus 35 i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999874
No 183
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.34 E-value=0.01 Score=51.77 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=21.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++|.|+||+||||+++.+++.++
T Consensus 6 I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999874
No 184
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.34 E-value=0.0098 Score=52.58 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=22.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.++|.|++|+||||+++.+++.++
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999999874
No 185
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.33 E-value=0.0099 Score=53.08 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
++|.|+||+||||+++.+++.++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999998743
No 186
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.31 E-value=0.047 Score=53.33 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++.-.
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHcCC
Confidence 8899999999999999999754
No 187
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.30 E-value=0.011 Score=52.28 Aligned_cols=24 Identities=33% Similarity=0.665 Sum_probs=22.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.++|.|+||+||||+++.+++.+.
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999874
No 188
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.26 E-value=0.011 Score=52.38 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=22.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
++|.|+||+||||+++.+++.+..
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhh
Confidence 899999999999999999998854
No 189
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.25 E-value=0.013 Score=50.98 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=21.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
.++|+|++|+||||+++.+++.
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4999999999999999999998
No 190
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.25 E-value=0.012 Score=51.37 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=22.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
..++|.|++|+||||+++.+++.+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3499999999999999999999874
No 191
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.25 E-value=0.023 Score=50.26 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCC--Ce-EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 51 QEVVSVLKKCLSGADL--PH-FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 51 ~~~~~~l~~~l~~~~~--~~-~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+..++.+.+.+..... +. +.|.|++|+||||+++.++..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455566665554322 22 99999999999999999998763
No 192
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.24 E-value=0.079 Score=51.60 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++.-.
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCChHHHHHHHHHcCC
Confidence 8899999999999999998754
No 193
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.23 E-value=0.013 Score=50.91 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.++|.|++|+||||+++.+++.++
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999874
No 194
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.22 E-value=0.14 Score=45.63 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=17.5
Q ss_pred eEEEECCCCCcHHHH-HHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTST-MIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~-a~~l~~~l 90 (456)
++++.+|+|+|||.+ +-.+...+
T Consensus 53 ~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 53 DVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH
Confidence 599999999999987 34444444
No 195
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.20 E-value=0.012 Score=52.54 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++|.||||+||+|.++.+++.++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 68899999999999999999873
No 196
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.19 E-value=0.012 Score=52.82 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=23.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
..++|.|+||+||||+++.+++.+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34999999999999999999998753
No 197
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.18 E-value=0.066 Score=50.48 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=21.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.|.|++|+||||++..++..+.
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998775
No 198
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.17 E-value=0.019 Score=50.98 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcC-CCCe-EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 52 EVVSVLKKCLSGA-DLPH-FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 52 ~~~~~l~~~l~~~-~~~~-~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.++.|.+.+... ..+. +.|.||+|+||||+++.++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455555555432 2222 89999999999999999998874
No 199
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.17 E-value=0.24 Score=46.58 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=31.2
Q ss_pred CCCcccccccHHHHHHHHH---------------HHhcCCCCeEEEECCCCCcHHHHHH-HHHHHhc
Q psy12150 41 PKTIDDVIEQQEVVSVLKK---------------CLSGADLPHFLFYGPPGTGKTSTMI-AACHQLF 91 (456)
Q Consensus 41 P~~~~~ivg~~~~~~~l~~---------------~l~~~~~~~~Ll~G~~G~GKT~~a~-~l~~~l~ 91 (456)
..+|+++--.+..++.|.. .+..+...++++++|+|+|||.+.. .+...+.
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~ 157 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE 157 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhh
Confidence 3567776555655554432 2233333469999999999998743 4444443
No 200
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.16 E-value=0.052 Score=52.40 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=33.8
Q ss_pred HHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCc----cccceEEeeCCCC
Q psy12150 56 VLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDM----YRERILELNASDD 107 (456)
Q Consensus 56 ~l~~~l~~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~~~----~~~~~~e~n~~~~ 107 (456)
.|-..+.+|-.+. ++|+||||+|||+++..++.....+. ....+++++....
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 3444454443333 89999999999999999988642211 1235667766653
No 201
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.15 E-value=0.013 Score=49.88 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=21.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
++|.|++|+||||+++.+++.+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~ 26 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNI 26 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999998753
No 202
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.13 E-value=0.011 Score=51.77 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=22.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.++|.|+||+||||+++.+++.++
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999999874
No 203
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.13 E-value=0.02 Score=51.14 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=35.6
Q ss_pred cccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 48 IEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 48 vg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
-.+....+.++......+.+.++|.|++|+||||++..++..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 12 AENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred hhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 345566677777776666667999999999999999999988644
No 204
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.12 E-value=0.013 Score=51.02 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=22.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
++|.|++|+||||+++.++..+..
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 899999999999999999998753
No 205
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.10 E-value=0.2 Score=41.76 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.+++.|++|+|||++++++...-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998753
No 206
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.10 E-value=0.017 Score=52.45 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=22.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
..++|.|+||+||||+++.+++.+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999999874
No 207
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.09 E-value=0.071 Score=45.26 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+++.|++|+|||++++.+...
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999864
No 208
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.09 E-value=0.074 Score=51.62 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++.-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 8899999999999999998754
No 209
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.09 E-value=0.073 Score=46.73 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.2
Q ss_pred CeEEEECCCCCcHHHHHH
Q psy12150 67 PHFLFYGPPGTGKTSTMI 84 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~ 84 (456)
.++++.+|+|+|||.+..
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 359999999999997654
No 210
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.08 E-value=0.02 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=22.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.+.|.||+|+||||+++.++..+.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 399999999999999999999874
No 211
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.07 E-value=0.014 Score=51.39 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=22.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
++|.|++|+||||+++.+++.+..
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEECCCccCHHHHHHHHHHhcCC
Confidence 789999999999999999998753
No 212
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.07 E-value=0.076 Score=51.36 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++.-.
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 8899999999999999998754
No 213
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.07 E-value=0.014 Score=52.45 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=21.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++|.||||+||+|.++.+++.++
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78899999999999999999873
No 214
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.04 E-value=0.11 Score=44.82 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.++|.|++|+|||++++.+...-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 38999999999999999998764
No 215
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.04 E-value=0.0086 Score=51.82 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=18.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.++|.|+||+||||+++.+++.+..
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~~ 31 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLPG 31 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHSTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4899999999999999999998754
No 216
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.03 E-value=0.013 Score=52.86 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=22.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
..++|.|+||+||||+++.+++.++
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3499999999999999999999864
No 217
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.03 E-value=0.013 Score=52.56 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=22.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.++|.|+||+||||+++.+++.++
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999874
No 218
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.02 E-value=0.1 Score=50.53 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||++++++.-.
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHhcCC
Confidence 8999999999999999998744
No 219
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.02 E-value=0.015 Score=51.31 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.++|.|++|+||||+++.+++.++
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 389999999999999999998863
No 220
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.01 E-value=0.013 Score=51.95 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=21.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
++|.||+|+||||+++.+++.+
T Consensus 15 i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999999986
No 221
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.00 E-value=0.038 Score=49.42 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 51 QEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 51 ~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
+.....++..+.....+.++|.|.+|+|||+++..++......
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3445666666666556669999999999999999999886543
No 222
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.99 E-value=0.015 Score=50.00 Aligned_cols=22 Identities=32% Similarity=0.685 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
++|.|++|+||||+++.++..+
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHhh
Confidence 8999999999999999999876
No 223
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.94 E-value=0.24 Score=50.23 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
++|.|++|+||||++..++..+..
T Consensus 104 I~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 104 IMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 899999999999999999987653
No 224
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.91 E-value=0.012 Score=51.30 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+.|.||+|+||||+++.++..
T Consensus 12 i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 899999999999999999886
No 225
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.89 E-value=0.014 Score=51.70 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
.++|.|++|+||||+++.+++.+...
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 38999999999999999999987543
No 226
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.89 E-value=0.046 Score=47.53 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.+++.|++|+|||+++.++...-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 39999999999999999998763
No 227
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.87 E-value=0.017 Score=50.54 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=21.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+++|+||+|+||||+++.+.+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999999875
No 228
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.83 E-value=0.043 Score=46.20 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+++.|++|+|||++++.+...-
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998754
No 229
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.78 E-value=0.018 Score=50.38 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=21.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.|.|++|+||||+++.+++.+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999873
No 230
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.78 E-value=0.018 Score=51.89 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++|.|+||+||||+++.+++.++
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999874
No 231
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.78 E-value=0.018 Score=50.18 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.|.|++|+||||+++.+++.+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999873
No 232
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.74 E-value=0.23 Score=49.81 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=21.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++|.|+||+|||+++..++..+.
T Consensus 206 iiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 206 IIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 233
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.73 E-value=0.016 Score=51.67 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=21.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++|.|+||+||||+++.+++.++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999874
No 234
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.71 E-value=0.049 Score=52.06 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=33.3
Q ss_pred HHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCc----cccceEEeeCCCC
Q psy12150 56 VLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDM----YRERILELNASDD 107 (456)
Q Consensus 56 ~l~~~l~~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~~~----~~~~~~e~n~~~~ 107 (456)
.|...+.+|-.+. ++|+||||+|||+++..++....... ....+++++....
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 3444444333333 99999999999999999988753220 1235666766653
No 235
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.71 E-value=0.019 Score=52.53 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
..+.|.||+|+||||+++.+++.++
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3499999999999999999998874
No 236
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.71 E-value=0.042 Score=51.70 Aligned_cols=23 Identities=39% Similarity=0.729 Sum_probs=21.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.|.|++|+||||+++.++..+.
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 89999999999999999998775
No 237
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.69 E-value=0.13 Score=42.80 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.+++.|++|+|||++++.+...-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998753
No 238
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.66 E-value=0.12 Score=45.22 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=17.4
Q ss_pred eEEEECCCCCcHHHHHH-HHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMI-AACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~-~l~~~l 90 (456)
++++.+|+|+|||.++- .+...+
T Consensus 40 ~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 40 DLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CEEEECCCCChHHHHHHHHHHHHH
Confidence 59999999999998744 344443
No 239
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.65 E-value=0.017 Score=51.51 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.|.||+|+||||+++.++..+.
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHSTT
T ss_pred EEEECcCCCCHHHHHHHHHhhCC
Confidence 89999999999999999998763
No 240
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=94.64 E-value=0.29 Score=45.43 Aligned_cols=39 Identities=8% Similarity=0.014 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy12150 49 EQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 49 g~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
-++.....+..++.+ .+.++.+|+|+|||.++..++...
T Consensus 114 l~~~Q~~ai~~~l~~---~~~ll~~~tGsGKT~~~~~~~~~~ 152 (282)
T 1rif_A 114 PHWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY 152 (282)
T ss_dssp CCHHHHHHHHHHHHH---SEEEECCCTTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhc---CCeEEEcCCCCCcHHHHHHHHHHH
Confidence 344455556666654 246889999999999987776653
No 241
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.61 E-value=0.037 Score=46.53 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.+++.|++|+|||++++.+...-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998753
No 242
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.60 E-value=0.12 Score=50.15 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=18.1
Q ss_pred CCCCeEEEECCCCCcHHHHHHHHH
Q psy12150 64 ADLPHFLFYGPPGTGKTSTMIAAC 87 (456)
Q Consensus 64 ~~~~~~Ll~G~~G~GKT~~a~~l~ 87 (456)
+...++++.+|+|+|||..+...+
T Consensus 42 ~~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 42 NPPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp SSCCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHH
Confidence 333469999999999998765443
No 243
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.58 E-value=0.068 Score=53.00 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=34.2
Q ss_pred CCcccccccHHHHHHHHHHHhcCCCCe-EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 42 KTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 42 ~~~~~ivg~~~~~~~l~~~l~~~~~~~-~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.+++++--.......++..+. .... ++|.||+|+||||+++++...+..
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~--~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIK--RPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHT--SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred CCHHHcCCCHHHHHHHHHHHH--hcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 355565444444455666543 2223 899999999999999999998754
No 244
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.55 E-value=0.019 Score=51.00 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=23.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
.++|.|++|+||||+++.+++.+...
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 39999999999999999999987543
No 245
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.54 E-value=0.25 Score=47.21 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=18.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.++++.+|+|+|||..+...+-..
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 369999999999999876554443
No 246
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.53 E-value=0.053 Score=46.94 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+++.|++|+|||++++.+....
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 9999999999999998777654
No 247
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.52 E-value=0.087 Score=44.67 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.+++.|++|+|||++++++...-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 39999999999999999998754
No 248
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.52 E-value=0.021 Score=49.80 Aligned_cols=22 Identities=36% Similarity=0.682 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
++|.||+|+||||+++.++...
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 7899999999999999998754
No 249
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.52 E-value=0.11 Score=44.85 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=20.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Q psy12150 65 DLPHFLFYGPPGTGKTSTMIAACH 88 (456)
Q Consensus 65 ~~~~~Ll~G~~G~GKT~~a~~l~~ 88 (456)
+...+++.|++|+|||++++++..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 333499999999999999999985
No 250
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.49 E-value=0.036 Score=55.25 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.+++.|++|+||||++..++..+.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 399999999999999999998764
No 251
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.47 E-value=0.062 Score=46.29 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
++|.|++|+|||++++++...
T Consensus 14 i~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999999874
No 252
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.46 E-value=0.023 Score=50.96 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.+.|.|++|+||||+++.+++.++
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999763
No 253
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.42 E-value=0.27 Score=41.78 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+++.|++|+|||++++.+...-
T Consensus 21 i~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhhCC
Confidence 9999999999999999998653
No 254
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.41 E-value=0.021 Score=50.32 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.++|.|++|+||||+++.+++.+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999986
No 255
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.39 E-value=0.16 Score=45.37 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
++|.|.+|+|||+++..+...-
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCcCHHHHHHHHHhCC
Confidence 8999999999999999988643
No 256
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.38 E-value=0.23 Score=46.67 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
+.+.|++|+||||++..++..+..
T Consensus 101 i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 778899999999999999987653
No 257
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.35 E-value=0.024 Score=49.96 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||+|+||||+++.++..+
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhhC
Confidence 8899999999999999999864
No 258
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.34 E-value=0.031 Score=48.17 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.|++|+||||+++.++..+
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999976
No 259
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.32 E-value=0.21 Score=42.70 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+++.|++|+|||++++++...-
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 8999999999999999998754
No 260
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.29 E-value=0.024 Score=49.93 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=21.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.+.|.||+|+||||+++.++..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 38999999999999999999875
No 261
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.28 E-value=0.02 Score=50.63 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=21.2
Q ss_pred HHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy12150 55 SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 55 ~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.+.+.......-.+++.|++|+|||+++..+....
T Consensus 19 ~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 19 SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -----------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred hHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 334333333333349999999999999999998643
No 262
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.27 E-value=0.036 Score=47.64 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=24.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhcCCcc
Q psy12150 66 LPHFLFYGPPGTGKTSTMIAACHQLFGDMY 95 (456)
Q Consensus 66 ~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~ 95 (456)
++.+.|.|++|+||||++..++..+....+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~ 33 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGW 33 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCC
Confidence 345899999999999999999998754333
No 263
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.25 E-value=0.03 Score=53.42 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=22.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.++|.||+|+|||+++..+++.++
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 389999999999999999999874
No 264
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.22 E-value=0.18 Score=42.02 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+++.|++|+|||++++++...
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999874
No 265
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.21 E-value=0.12 Score=49.49 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 53 VVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 53 ~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.+.+.-.+..+. .++|.||+|+||||++++++..+.
T Consensus 160 ~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 160 AISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGGGSC
T ss_pred HHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhCCCc
Confidence 4555666666554 489999999999999999998754
No 266
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.20 E-value=0.064 Score=46.80 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
.+++.|++|+|||++++.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4999999999999999977664
No 267
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=94.20 E-value=0.28 Score=49.34 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=19.1
Q ss_pred CCCCeEEEECCCCCcHHHHH-HHHHHHh
Q psy12150 64 ADLPHFLFYGPPGTGKTSTM-IAACHQL 90 (456)
Q Consensus 64 ~~~~~~Ll~G~~G~GKT~~a-~~l~~~l 90 (456)
+...++++.||+|+|||.+. ..+...+
T Consensus 129 ~~~~~~l~~a~TGsGKT~~~~l~il~~l 156 (479)
T 3fmp_B 129 EPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (479)
T ss_dssp BSCCEEEEECCSSSSHHHHHHHHHHTTC
T ss_pred CCCCcEEEEcCCCCchhHHHHHHHHHHH
Confidence 33356999999999999874 3444443
No 268
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.14 E-value=0.22 Score=43.99 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
.++|.|++|+|||++++++...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999998864
No 269
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.13 E-value=0.098 Score=43.82 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+++.|++|+|||++++++...
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999864
No 270
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.12 E-value=0.094 Score=49.94 Aligned_cols=35 Identities=34% Similarity=0.449 Sum_probs=25.5
Q ss_pred HHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHh
Q psy12150 56 VLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 56 ~l~~~l~~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.|...+.+|-.+. ++|+|+||+|||+++..++...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444444443333 9999999999999999998763
No 271
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.11 E-value=0.028 Score=48.94 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.|.||+|+||||+++.++..+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999998753
No 272
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.11 E-value=0.037 Score=47.13 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
.+++.|++|+|||++++++...
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3999999999999999998753
No 273
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.09 E-value=0.55 Score=46.68 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
+++.|++|+||||++..++..+...
T Consensus 103 I~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh
Confidence 8889999999999999999887643
No 274
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.08 E-value=0.054 Score=48.12 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.++|.|++|+||||+++.+++.+.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 389999999999999999999875
No 275
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.07 E-value=0.083 Score=45.55 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+++.|++|+|||+++..+...-
T Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998753
No 276
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.02 E-value=0.14 Score=44.56 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.++|.|++|+|||+++..+...-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 39999999999999999998653
No 277
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.99 E-value=0.034 Score=49.01 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||+|+||||+++.+...+
T Consensus 7 i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 8999999999999999999865
No 278
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.98 E-value=0.17 Score=43.70 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+++.|++|+|||++++++...-
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 9999999999999999998753
No 279
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=93.95 E-value=0.3 Score=47.57 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=18.1
Q ss_pred CeEEEECCCCCcHHHHHH-HHHHHh
Q psy12150 67 PHFLFYGPPGTGKTSTMI-AACHQL 90 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~-~l~~~l 90 (456)
.++++.+|+|+|||..+- .+...+
T Consensus 65 ~~~lv~apTGsGKT~~~~~~~~~~~ 89 (412)
T 3fht_A 65 QNLIAQSQSGTGKTAAFVLAMLSQV 89 (412)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCchHHHHHHHHHHHHh
Confidence 459999999999998753 344444
No 280
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.94 E-value=0.033 Score=49.17 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
++|.||+|+||||+++.+++..
T Consensus 22 ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 22 LVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhhC
Confidence 8999999999999999999875
No 281
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.94 E-value=0.089 Score=50.95 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=27.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhcCCccccceEEee
Q psy12150 66 LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELN 103 (456)
Q Consensus 66 ~~~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n 103 (456)
.+.+.|.|+||+||||++.+++..+.....+.-++..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 33499999999999999999998875443333344443
No 282
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.91 E-value=0.035 Score=50.91 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=22.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.+.|.|++|+||||+++.+++.++.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3999999999999999999998753
No 283
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.89 E-value=0.037 Score=50.26 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=22.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.+.|.||+|+||||+++.+++.++
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999999874
No 284
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.88 E-value=0.12 Score=43.38 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+++.|++|+|||++++++...-
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998653
No 285
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.84 E-value=0.23 Score=41.33 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.+++.|++|+|||++++.+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998653
No 286
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.83 E-value=0.21 Score=47.93 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=26.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~ 105 (456)
++|.|+||+|||+++..++..+.... ..+..++..
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~~g--~~Vl~fSlE 83 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALNDD--RGVAVFSLE 83 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT--CEEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCC
Confidence 99999999999999999988764322 245555554
No 287
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.83 E-value=0.18 Score=49.29 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=17.2
Q ss_pred eEEEECCCCCcHHHHHHH-HHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIA-ACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~-l~~~l 90 (456)
++++.+|+|+|||..+.. +...+
T Consensus 79 ~~lv~a~TGsGKT~~~~~~~~~~~ 102 (414)
T 3eiq_A 79 DVIAQAQSGTGKTATFAISILQQI 102 (414)
T ss_dssp CEEECCCSCSSSHHHHHHHHHHHC
T ss_pred CEEEECCCCCcccHHHHHHHHHHH
Confidence 489999999999987543 34333
No 288
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.81 E-value=0.19 Score=43.75 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
++|.|++|+|||++++.+...
T Consensus 11 i~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999998864
No 289
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.80 E-value=0.13 Score=44.96 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
.++|.|++|+|||++++.+...
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 3899999999999999999764
No 290
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.79 E-value=0.061 Score=46.43 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=23.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 66 LPHFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 66 ~~~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.+.+.|.|++|+||||+++.+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 344899999999999999999987643
No 291
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.76 E-value=0.15 Score=43.87 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.+++.|++|+|||++++++...-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 39999999999999999998643
No 292
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=93.75 E-value=0.41 Score=43.22 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=17.1
Q ss_pred eEEEECCCCCcHHHHHH-HHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMI-AACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~-~l~~~l 90 (456)
++++.+|+|+|||.+.. .+...+
T Consensus 68 ~~l~~a~TGsGKT~~~~l~~l~~l 91 (245)
T 3dkp_A 68 ELLASAPTGSGKTLAFSIPILMQL 91 (245)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH
Confidence 48999999999998743 334444
No 293
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.73 E-value=0.05 Score=46.62 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+++.|++|+|||++++.+...-
T Consensus 8 i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998643
No 294
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.73 E-value=0.27 Score=43.18 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
..+++.|++|+|||+++.++...-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 349999999999999999998754
No 295
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.70 E-value=0.033 Score=49.06 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.+.|.|++|+||||+++.+++ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 478999999999999999998 5
No 296
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.67 E-value=0.042 Score=48.39 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=22.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.+.|.|++|+||||+++.+++.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 488999999999999999999875
No 297
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.62 E-value=0.77 Score=45.73 Aligned_cols=49 Identities=14% Similarity=0.094 Sum_probs=32.4
Q ss_pred HHHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCC
Q psy12150 55 SVLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (456)
Q Consensus 55 ~~l~~~l~~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~ 105 (456)
..|.+.+ +|-.+. ++|.|+||+|||+++..++...... ...+++.++..
T Consensus 188 ~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE 238 (444)
T 2q6t_A 188 KELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE 238 (444)
T ss_dssp HHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS
T ss_pred Hhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC
Confidence 3455555 443333 9999999999999999998875421 11246666554
No 298
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=93.59 E-value=0.16 Score=45.77 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=15.1
Q ss_pred eEEEECCCCCcHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIA 85 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~ 85 (456)
++++.+|+|+|||.+...
T Consensus 69 ~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 69 DVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp CEEECCCSSHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHH
Confidence 599999999999987443
No 299
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.59 E-value=0.2 Score=43.18 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+++.|++|+|||++++++...-
T Consensus 18 i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 18 ILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 9999999999999999998753
No 300
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.58 E-value=0.038 Score=47.64 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+++.|++|+|||++++.+...-
T Consensus 10 i~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998753
No 301
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=93.58 E-value=0.35 Score=49.10 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=18.2
Q ss_pred CeEEEECCCCCcHHHHHH-HHHHHh
Q psy12150 67 PHFLFYGPPGTGKTSTMI-AACHQL 90 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~-~l~~~l 90 (456)
.++++.+|+|+|||.++. .+...+
T Consensus 159 ~~~ll~apTGsGKT~~~~~~il~~l 183 (508)
T 3fho_A 159 RNMIGQSQSGTGKTAAFALTMLSRV 183 (508)
T ss_dssp CCEEEECCSSTTSHHHHHHHHHHHS
T ss_pred CCEEEECCCCccHHHHHHHHHHHHH
Confidence 459999999999999744 444444
No 302
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.58 E-value=0.09 Score=59.97 Aligned_cols=61 Identities=13% Similarity=0.275 Sum_probs=36.9
Q ss_pred CCcEEEEEcCCC-CccHHHHHHHHHHHHhccCcceEEEEecCccccccc----ccCCceEEEecCC
Q psy12150 136 PPFKIVILDEAD-SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP----LTSRCSKFRFKPL 196 (456)
Q Consensus 136 ~~~~iviIDE~d-~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~kl~~~----l~~r~~~i~f~~~ 196 (456)
.+.+|+++||+- .+..+....+.+.+.+......+|+++++...+..+ +.+.+.++++..+
T Consensus 1234 r~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth 1299 (1321)
T 4f4c_A 1234 RNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTH 1299 (1321)
T ss_dssp SCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECH
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCH
Confidence 345699999985 344455555666776655555555666655443322 3466667777654
No 303
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.56 E-value=0.15 Score=43.41 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+++.|++|+|||++++++...
T Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 999999999999999999875
No 304
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.55 E-value=0.078 Score=44.44 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=18.7
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACH 88 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~ 88 (456)
.+++.|++|+|||++++++..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999998864
No 305
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.53 E-value=0.28 Score=42.21 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+++.|++|+|||++++.+...-
T Consensus 25 i~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998653
No 306
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.52 E-value=0.035 Score=49.06 Aligned_cols=20 Identities=25% Similarity=0.209 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACH 88 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~ 88 (456)
+.|.|++|+||||+++.++.
T Consensus 5 i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 307
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.50 E-value=0.037 Score=47.53 Aligned_cols=17 Identities=24% Similarity=0.512 Sum_probs=16.2
Q ss_pred EEEECCCCCcHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIA 85 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~ 85 (456)
+.|.||+|+||||+++.
T Consensus 12 ~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 89999999999999995
No 308
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.50 E-value=0.26 Score=49.62 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=22.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.+++.|.||+||||+++.+++.+..
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3999999999999999999998753
No 309
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.49 E-value=0.094 Score=44.61 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+++.|++|+|||++++++...-
T Consensus 13 i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 9999999999999999998753
No 310
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.48 E-value=0.11 Score=45.09 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+++.|++|+|||++++++...
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999998753
No 311
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.46 E-value=0.22 Score=47.08 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++..+
T Consensus 83 vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 83 LALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEECCCCchHHHHHHHHHcCC
Confidence 8999999999999999998754
No 312
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.44 E-value=0.14 Score=44.63 Aligned_cols=22 Identities=23% Similarity=0.569 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
.+++.|++|+|||++++++...
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4999999999999999999864
No 313
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.37 E-value=0.23 Score=44.36 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=15.1
Q ss_pred eEEEECCCCCcHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIA 85 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~ 85 (456)
++++.+|+|+|||.+...
T Consensus 59 ~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 59 DLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred CEEEECCCCChHHHHHHH
Confidence 589999999999986543
No 314
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.37 E-value=0.049 Score=50.01 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=22.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.+.|.|++|+||||+++.+++.++.
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4999999999999999999998743
No 315
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=93.35 E-value=0.04 Score=53.00 Aligned_cols=88 Identities=11% Similarity=0.043 Sum_probs=70.1
Q ss_pred HHHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhh---hCChHHHHHHHHHHHHcCCCHH
Q psy12150 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDSFQVLEKYIEDLILEAYSAT 396 (456)
Q Consensus 320 ~~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~s~~ 396 (456)
+++..+.+.++||+|++.+.|+.++...++..|+.++|.+++|......+-++++ .++...+...+..+...|.++.
T Consensus 165 ~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~if~l~~ai~~~d~~~al~~l~~l~~~g~~~~ 244 (343)
T 1jr3_D 165 AANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRLEGSEPV 244 (343)
T ss_dssp HHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCCHHHHHHHHTTSCHHHHHHHHTSSTTTTCCHH
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHH
Confidence 4567778899999999999999887654444688888888888776665555554 5888888888888889999999
Q ss_pred HHHHHHHHHHh
Q psy12150 397 QLFDQFHDIVM 407 (456)
Q Consensus 397 di~~~l~~~~~ 407 (456)
.|+..|...+.
T Consensus 245 ~il~~l~~~~r 255 (343)
T 1jr3_D 245 ILLRTLQRELL 255 (343)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988865554
No 316
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.35 E-value=0.021 Score=50.67 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=21.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.|.|++|+||||+++.+++.+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999875
No 317
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.34 E-value=0.049 Score=50.04 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=22.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.+.|.||+|+||||+++.+++.++
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 389999999999999999998874
No 318
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.31 E-value=0.054 Score=48.18 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+++.|++|+|||+++..+...-
T Consensus 30 i~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 30 LVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 9999999999999999998753
No 319
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.29 E-value=0.26 Score=52.84 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=21.7
Q ss_pred HHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHH
Q psy12150 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88 (456)
Q Consensus 56 ~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~ 88 (456)
.+...+.++ ..+++.||+|+|||+++..+..
T Consensus 101 ~i~~~l~~~--~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 101 EFLKLYQNN--QIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp HHHHHHHHC--SEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHhCC--CeEEEECCCCCCHHHHHHHHHH
Confidence 334444443 2589999999999997766644
No 320
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=93.28 E-value=0.55 Score=45.33 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=16.9
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACH 88 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~ 88 (456)
++++.+|+|+|||..+...+-
T Consensus 47 ~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 47 DVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp CEEEECSSCSSHHHHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHHH
Confidence 599999999999987654443
No 321
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.28 E-value=0.31 Score=42.05 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
.+++.|++|+|||++++++...
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 3999999999999999999874
No 322
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.28 E-value=0.053 Score=49.08 Aligned_cols=24 Identities=38% Similarity=0.686 Sum_probs=22.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
++|.|++|+||||+++.+++.+..
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhc
Confidence 899999999999999999998864
No 323
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.26 E-value=0.085 Score=44.86 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.+++.|++|+|||++++.+...-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 39999999999999999998753
No 324
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.24 E-value=0.072 Score=52.66 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.+.|.||+|+||||++++++...
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999998743
No 325
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.23 E-value=0.098 Score=49.85 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=21.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.|.||+|+||||+++.+...+.
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 89999999999999999998765
No 326
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=93.19 E-value=0.21 Score=50.06 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy12150 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.+...+.+..+++++ .+++.||+|+|||..+..++...
T Consensus 95 ~~~Q~~ai~~i~~~~---~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 95 RDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp CHHHHHHHHHHTTTT---EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 445555555555542 48999999999999988777765
No 327
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.18 E-value=0.049 Score=48.26 Aligned_cols=23 Identities=26% Similarity=0.197 Sum_probs=21.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.|.||+|+||||+++.++..+.
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999999764
No 328
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.18 E-value=0.09 Score=47.80 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=22.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
+.|.|++|+||||.++.+++.+...
T Consensus 30 i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 30 IVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp EEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 8999999999999999999988653
No 329
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=93.18 E-value=0.48 Score=43.47 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=14.8
Q ss_pred eEEEECCCCCcHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMI 84 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~ 84 (456)
++++.+|+|+|||.++.
T Consensus 93 ~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 93 DLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCEECCCTTSCHHHHHH
T ss_pred cEEEEccCCCCchHHHH
Confidence 58999999999998744
No 330
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.13 E-value=0.048 Score=49.47 Aligned_cols=20 Identities=35% Similarity=0.380 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACH 88 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~ 88 (456)
+.|.||+|+||||+++.++.
T Consensus 33 ~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 99999999999999999884
No 331
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.13 E-value=0.053 Score=47.53 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
.+.|.|++|+||||+++.+++.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 3899999999999999999986
No 332
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.10 E-value=0.26 Score=51.04 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.+.||.|+||||+++.++..+
T Consensus 372 ~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 372 VALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
No 333
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.10 E-value=0.054 Score=48.66 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||+|+||||+++.++...
T Consensus 19 i~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 19 YIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 8999999999999999999875
No 334
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.10 E-value=0.1 Score=54.65 Aligned_cols=39 Identities=38% Similarity=0.511 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++.....+...+.+ +..+++||||||||+++..++..+.
T Consensus 182 n~~Q~~av~~~l~~---~~~li~GppGTGKT~~~~~~i~~l~ 220 (624)
T 2gk6_A 182 NHSQVYAVKTVLQR---PLSLIQGPPGTGKTVTSATIVYHLA 220 (624)
T ss_dssp CHHHHHHHHHHHTC---SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcC---CCeEEECCCCCCHHHHHHHHHHHHH
Confidence 45556666666642 3589999999999999888877664
No 335
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=93.09 E-value=0.64 Score=52.17 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHH
Q psy12150 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87 (456)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~ 87 (456)
|...+..+...+.++++.+++++||.|+|||.++...+
T Consensus 608 Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa 645 (1151)
T 2eyq_A 608 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA 645 (1151)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHH
Confidence 44555555555556766679999999999998765433
No 336
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.09 E-value=0.053 Score=48.60 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||+|+||||+++.++..+
T Consensus 26 ~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 8999999999999999999865
No 337
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.07 E-value=0.061 Score=45.65 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++..+
T Consensus 36 v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999999987
No 338
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.05 E-value=0.058 Score=48.04 Aligned_cols=42 Identities=31% Similarity=0.457 Sum_probs=29.4
Q ss_pred ccCCCCcccccccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHH
Q psy12150 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 38 ky~P~~~~~ivg~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
..+|+++.+ ..+++. +..|. .+.|.||.|+||||+++.++..
T Consensus 4 ~i~pk~~g~----~~~l~~----i~~Ge--~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 4 VIRPKTLGQ----KHYVDA----IDTNT--IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CCCCCSHHH----HHHHHH----HHHCS--EEEEECCTTSSTTHHHHHHHHH
T ss_pred ccccCCHhH----HHHHHh----ccCCC--EEEEECCCCCCHHHHHHHHhcC
Confidence 457777643 333333 34332 3889999999999999999875
No 339
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.05 E-value=0.14 Score=43.63 Aligned_cols=22 Identities=23% Similarity=0.461 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+++.|++|+|||++++++....
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 8999999999999999998753
No 340
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.03 E-value=0.063 Score=47.16 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.|+|++|+||||+++.+++.++
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 88999999999999999999763
No 341
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.02 E-value=0.71 Score=43.35 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=21.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
+.+.|++|+||||++..++..+..
T Consensus 101 i~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp EEEECSSCSSTTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 888999999999999999987753
No 342
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=93.02 E-value=0.26 Score=43.72 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=15.3
Q ss_pred eEEEECCCCCcHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIA 85 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~ 85 (456)
++++.+|+|+|||.+...
T Consensus 43 ~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 43 SMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CEEEECCSSHHHHHHHHH
T ss_pred CEEEECCCCChHHHHHHH
Confidence 589999999999997443
No 343
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.01 E-value=0.16 Score=43.93 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+++.|++|+|||++++.+...-
T Consensus 26 i~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 9999999999999999998753
No 344
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.00 E-value=0.072 Score=50.32 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++|.||+|+|||+++..+++.+.
T Consensus 13 i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEECCCccCHHHHHHHHHHhCC
Confidence 89999999999999999999864
No 345
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.00 E-value=0.11 Score=46.03 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+++.|++|+|||+++..+...
T Consensus 37 i~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 37 VVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 999999999999999999753
No 346
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.90 E-value=0.039 Score=48.79 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.|++|+||||+++.+++.+
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8899999999999999999864
No 347
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=92.90 E-value=0.3 Score=34.92 Aligned_cols=59 Identities=14% Similarity=0.074 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhC
Q psy12150 203 TRLQYICEQESV-MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261 (456)
Q Consensus 203 ~~l~~~~~~~~~-~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~ 261 (456)
+.++.+++.-|+ .+++++...|++...--++++++..-+.+..++++.++.+||..++.
T Consensus 10 ~~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 10 ESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 345666777788 79999999999988888888888888888777889999999988764
No 348
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=92.89 E-value=0.43 Score=48.27 Aligned_cols=38 Identities=8% Similarity=0.018 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy12150 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.+.....+..++.+ .+.++.||+|+|||..+..++...
T Consensus 115 ~~~Q~~ai~~~~~~---~~~ll~~~tGsGKT~~~~~~~~~~ 152 (510)
T 2oca_A 115 HWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY 152 (510)
T ss_dssp CHHHHHHHHHHHHH---SEEEEECCSTTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHH
Confidence 34444555555554 358999999999999987666553
No 349
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.88 E-value=0.034 Score=53.24 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.++|.||+|+|||+++..+++.+++
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~ 66 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPL 66 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCC
Confidence 4899999999999999999998753
No 350
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=92.86 E-value=0.48 Score=42.39 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=17.2
Q ss_pred eEEEECCCCCcHHHHH-HHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTM-IAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a-~~l~~~l 90 (456)
++++.+|+|+|||.+. -.+...+
T Consensus 63 ~~l~~a~TGsGKT~~~~l~~l~~l 86 (230)
T 2oxc_A 63 DLIVQAKSGTGKTCVFSTIALDSL 86 (230)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH
Confidence 5899999999999874 3344444
No 351
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.86 E-value=0.059 Score=46.83 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+++.|++|+|||++++.+...-
T Consensus 26 i~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 9999999999999999998754
No 352
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.85 E-value=0.061 Score=47.63 Aligned_cols=22 Identities=18% Similarity=0.469 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||+|+||||+++.++..+
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 8899999999999999999875
No 353
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.85 E-value=0.12 Score=44.28 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+++.|++|+|||++++++...-
T Consensus 13 i~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 9999999999999999998753
No 354
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.83 E-value=0.54 Score=46.92 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCCCe--EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCC
Q psy12150 55 SVLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (456)
Q Consensus 55 ~~l~~~l~~~~~~~--~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~ 105 (456)
..|.+.+ +|-.+. ++|.|+||+|||+++..++....... ..++.++..
T Consensus 185 ~~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlE 234 (444)
T 3bgw_A 185 TELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE 234 (444)
T ss_dssp HHHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSS
T ss_pred HHHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECC
Confidence 3444445 333333 99999999999999999887764332 245555554
No 355
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.83 E-value=0.035 Score=50.41 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
++|+|+||+|||+++..++..
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 999999999999999887644
No 356
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.81 E-value=0.058 Score=47.69 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.+++.|++|+|||++++.+...-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 39999999999999999998753
No 357
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=92.80 E-value=0.32 Score=44.29 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=14.8
Q ss_pred eEEEECCCCCcHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMI 84 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~ 84 (456)
++++.+|+|+|||.+..
T Consensus 82 ~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 82 DIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred CEEEEcCCCCCchhHhH
Confidence 59999999999998744
No 358
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.79 E-value=0.11 Score=45.61 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.++|.|++|+|||++++++....
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 38999999999999999998754
No 359
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.73 E-value=0.099 Score=44.29 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+++.|++|+|||++++++...
T Consensus 17 i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999864
No 360
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.71 E-value=0.11 Score=52.89 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHHh--cCCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 50 QQEVVSVLKKCLS--GADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 50 ~~~~~~~l~~~l~--~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.+++.+.+.+... ......++|.|.+|+||||+++++++.+..
T Consensus 377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4555555666552 222234999999999999999999999964
No 361
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.69 E-value=0.2 Score=44.70 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=23.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCcc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMY 95 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~ 95 (456)
+.|.|++|+||||.++.+++.+.....
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~~~~~ 35 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLRERGI 35 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTTTC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 899999999999999999999865443
No 362
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.65 E-value=0.87 Score=45.01 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
+.+.|+.|+||||++..++..+...
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 8888999999999999999987654
No 363
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.65 E-value=0.14 Score=44.18 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.+++.|++|+|||+++.++...-
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 49999999999999999998753
No 364
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.61 E-value=0.069 Score=51.23 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=22.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.++|.||+|+|||+++..+++.+.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 389999999999999999999874
No 365
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=92.53 E-value=0.061 Score=47.90 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACH 88 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~ 88 (456)
+++.|++|+|||++++.+..
T Consensus 18 i~v~G~~~~GKSsli~~~~~ 37 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLT 37 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 99999999999999999443
No 366
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.52 E-value=0.059 Score=47.44 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++|.||+|+|||+++..+++...
T Consensus 37 ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 37 VLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 89999999999999999998753
No 367
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.47 E-value=0.069 Score=50.57 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.++|.||+|+|||+++..+++.+.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhCc
Confidence 388999999999999999999864
No 368
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.46 E-value=0.063 Score=46.60 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.+++.|++|+|||++++++...-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998763
No 369
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.46 E-value=0.074 Score=47.39 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACH 88 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~ 88 (456)
+.|.|++|+||||+++.+++
T Consensus 7 I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 7 VALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999987
No 370
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.41 E-value=0.081 Score=44.01 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+.+++.|++|+|||++++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999875
No 371
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=92.37 E-value=0.6 Score=49.88 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++.-.
T Consensus 579 ~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 579 VLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHhhh
Confidence 8999999999999999988643
No 372
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=92.33 E-value=0.14 Score=55.04 Aligned_cols=39 Identities=38% Similarity=0.511 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++.....+...+.+ +..+++||||||||+++..++..+.
T Consensus 358 n~~Q~~Av~~~l~~---~~~lI~GppGTGKT~ti~~~i~~l~ 396 (800)
T 2wjy_A 358 NHSQVYAVKTVLQR---PLSLIQGPPGTGKTVTSATIVYHLA 396 (800)
T ss_dssp CHHHHHHHHHHHTS---SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhccC---CeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45555666666642 3589999999999999888877664
No 373
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=92.30 E-value=0.33 Score=48.72 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=17.1
Q ss_pred eEEEECCCCCcHHHH-HHHHHHH
Q psy12150 68 HFLFYGPPGTGKTST-MIAACHQ 89 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~-a~~l~~~ 89 (456)
++++.||+|+|||.. +..+...
T Consensus 23 ~vlv~a~TGsGKT~~~~l~il~~ 45 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKILPQIIKD 45 (459)
T ss_dssp EEEECCCTTSCTTTTHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 599999999999996 4444443
No 374
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.25 E-value=0.26 Score=47.11 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
+.|.||+|+||||+++.++..+..
T Consensus 132 i~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999987643
No 375
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.19 E-value=0.15 Score=45.91 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=24.0
Q ss_pred HHhcCCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 60 ~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
...+.+...+.|.|++|+||||.++.+++.+..
T Consensus 15 ~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 15 QTQGPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp ----CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 333333333999999999999999999998754
No 376
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.17 E-value=0.19 Score=44.13 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
.+++.|++|+|||+++.++...
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3999999999999999999864
No 377
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=92.15 E-value=0.83 Score=44.30 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=16.3
Q ss_pred eEEEECCCCCcHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAAC 87 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~ 87 (456)
++++.+|+|+|||..+...+
T Consensus 60 ~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 60 DILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred CEEEECCCCcHHHHHHHHHH
Confidence 48999999999998765444
No 378
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.13 E-value=0.084 Score=46.13 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=4.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
.+++.|++|+|||+++.++...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3999999999999999998765
No 379
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.10 E-value=0.21 Score=49.95 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 53 VVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 53 ~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.++.|..+.+++ .++|+|++|+|||++++.++....
T Consensus 141 ~ID~L~pi~kGq---~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 141 VVDLLAPYIKGG---KIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHHSCEETTC---EEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCC---EEEEECCCCCCccHHHHHHHhhhh
Confidence 455555555443 489999999999999999887653
No 380
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.07 E-value=0.16 Score=43.50 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
.+++.|++|+|||++++++...
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3999999999999999998754
No 381
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=92.07 E-value=0.56 Score=46.57 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=16.4
Q ss_pred eEEEECCCCCcHHHHH-HHHH
Q psy12150 68 HFLFYGPPGTGKTSTM-IAAC 87 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a-~~l~ 87 (456)
++++.||+|+|||..+ ..+.
T Consensus 4 ~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp EEEEECCTTSCTTTTHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999975 4444
No 382
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.06 E-value=0.094 Score=46.64 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.+.|.|++|+|||++++.+++.++
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 389999999999999999999864
No 383
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.02 E-value=0.07 Score=47.07 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+++.|++|+|||++++.+...-
T Consensus 12 i~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 12 CVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 9999999999999999998653
No 384
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.02 E-value=0.082 Score=49.21 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++|+||+|+|||+++..++..+.
T Consensus 33 ~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 33 GALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999987654
No 385
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=92.00 E-value=0.48 Score=46.89 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy12150 51 QEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 51 ~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.....+...+.+ ++++.+|+|+|||..+-.++...
T Consensus 12 ~~Q~~~i~~~~~~----~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 12 IYQEVIYAKCKET----NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp HHHHHHHHHGGGS----CEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC----CEEEEcCCCCCHHHHHHHHHHHH
Confidence 3344444444443 68999999999999988776554
No 386
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.00 E-value=0.45 Score=40.76 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+.+++.|++|+|||+++.++...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 34999999999999999998865
No 387
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=91.97 E-value=0.25 Score=38.76 Aligned_cols=64 Identities=13% Similarity=0.014 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCC
Q psy12150 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP 264 (456)
Q Consensus 201 l~~~l~~~~~~~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~~~ 264 (456)
+.++++......+..++++++..|.+.+-.....+-..+...+.-++++.|+.+||.-++.+.+
T Consensus 33 V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~ 96 (113)
T 4dra_A 33 VGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSN 96 (113)
T ss_dssp HHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCH
Confidence 3345555555678899999999999988766667777777777777899999999999888763
No 388
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.97 E-value=0.097 Score=47.69 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+-|.||.|+||||+++.++..++
T Consensus 28 igI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 88999999999999999998763
No 389
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.91 E-value=0.056 Score=48.74 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=14.5
Q ss_pred EEEECCCCCcHHHHHHHHH-HHh
Q psy12150 69 FLFYGPPGTGKTSTMIAAC-HQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~-~~l 90 (456)
+.|.||+|+||||+++.++ ..+
T Consensus 30 i~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEECSCC----CHHHHHHC---
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 8999999999999999999 754
No 390
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.90 E-value=0.21 Score=48.18 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.+.|.|+||+||||+++++...+.
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhh
Confidence 399999999999999999998653
No 391
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.84 E-value=0.1 Score=47.14 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=21.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.|.|++|+||||+++.+++.++
T Consensus 19 i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 19 IAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999874
No 392
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.82 E-value=0.24 Score=46.80 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
+.|.||.|+||||+++.++..+..
T Consensus 105 i~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh
Confidence 889999999999999999987754
No 393
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.69 E-value=0.19 Score=44.82 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGD 93 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~ 93 (456)
+.|.|++|+||||.++.+++.+...
T Consensus 6 i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 6 IVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 8999999999999999999988654
No 394
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=91.69 E-value=0.84 Score=49.84 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=17.8
Q ss_pred EEEECCCCCcHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAAC 87 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~ 87 (456)
++|.||.|+||||+++.++
T Consensus 665 ~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 665 HIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8999999999999999884
No 395
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.62 E-value=0.13 Score=52.34 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
...+++.+.-.+..+. .++|.||+|+||||+++++...+.
T Consensus 246 ~~~~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp CHHHHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CHHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhCC
Confidence 3456667776777654 499999999999999999988663
No 396
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.58 E-value=0.11 Score=44.67 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=21.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.+|+||.|+|||++++++.-.+..
T Consensus 29 ~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 799999999999999999987654
No 397
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.57 E-value=0.18 Score=52.27 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.+.||.|+||||+++.++..+
T Consensus 372 ~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 372 VAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCc
Confidence 8999999999999999988754
No 398
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.54 E-value=0.21 Score=43.63 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
.++|.|++|+|||++++++...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3999999999999999998753
No 399
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.54 E-value=0.12 Score=48.89 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=21.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.|.||+|+||||+++.++..+.
T Consensus 83 igI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999998764
No 400
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.54 E-value=0.14 Score=52.98 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.+.||.|+||||+++.+...+
T Consensus 370 ~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 370 VAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEECCCCChHHHHHHHHhcCC
Confidence 8999999999999999988754
No 401
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.50 E-value=1.3 Score=44.73 Aligned_cols=37 Identities=8% Similarity=-0.020 Sum_probs=27.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD 106 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~ 106 (456)
++|.|+||+|||+++..++..+.... ...++.++...
T Consensus 245 ~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~ 281 (503)
T 1q57_A 245 IMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE 281 (503)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS
T ss_pred EEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC
Confidence 99999999999999999998775431 12456665543
No 402
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=91.47 E-value=0.57 Score=48.75 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Q psy12150 66 LPHFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 66 ~~~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.|.+.|.||.|+||||++++++...
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CCeEEEECCCCChHHHHHHHHhCCC
Confidence 4559999999999999999998753
No 403
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.45 E-value=0.11 Score=48.99 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=21.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||+|+||||+++.++..+
T Consensus 129 vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 129 LAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhhhc
Confidence 8999999999999999999876
No 404
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.44 E-value=0.1 Score=48.96 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++|.||+|+|||++++.++..+.
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998764
No 405
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.39 E-value=0.04 Score=51.83 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=18.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
-+.|.|++|+||||+++.+++.+.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999998765
No 406
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.38 E-value=0.19 Score=43.66 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACH 88 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~ 88 (456)
.+++.|++|+|||+++..+..
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 499999999999999999864
No 407
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.36 E-value=0.12 Score=45.18 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.|++|+||||+++.+....
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998753
No 408
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.36 E-value=0.12 Score=49.06 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=21.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.|.||+|+||||+++.++..+.
T Consensus 93 vgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHhhcc
Confidence 89999999999999999998764
No 409
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.36 E-value=0.2 Score=54.05 Aligned_cols=38 Identities=34% Similarity=0.489 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHh
Q psy12150 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
++.....+...+. .+.+++.||||||||+++..++..+
T Consensus 362 n~~Q~~Av~~~l~---~~~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 362 NSSQSNAVSHVLQ---RPLSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp CHHHHHHHHHHTT---CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHHHH
Confidence 3555556665554 2358999999999999887766544
No 410
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=91.34 E-value=1.2 Score=42.98 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=17.0
Q ss_pred eEEEECCCCCcHHHHHH-HHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMI-AACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~-~l~~~l 90 (456)
++++.+|+|+|||.++. .+...+
T Consensus 60 ~~lv~~~TGsGKT~~~~~~~~~~l 83 (394)
T 1fuu_A 60 DVLAQAQSGTGKTGTFSIAALQRI 83 (394)
T ss_dssp CEEECCCSSHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCChHHHHHHHHHHHHh
Confidence 48999999999998743 334433
No 411
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=91.34 E-value=0.22 Score=37.59 Aligned_cols=53 Identities=19% Similarity=0.168 Sum_probs=43.8
Q ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCC
Q psy12150 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP 264 (456)
Q Consensus 212 ~~~~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~~~~ 264 (456)
.|+.++++++..|.+.+-.....+...++..+.-++++.|+.+||.-++.+.+
T Consensus 29 ~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~ 81 (90)
T 3v9r_A 29 EDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQP 81 (90)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCH
T ss_pred cCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCh
Confidence 46889999999999987666666777777777777899999999999887764
No 412
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.26 E-value=0.12 Score=50.46 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=21.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++|.||+|+||||++++++..+.
T Consensus 139 i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 139 ILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhcC
Confidence 99999999999999999998764
No 413
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.23 E-value=0.15 Score=44.65 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.+++.|++|+|||+++..+...-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998753
No 414
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.21 E-value=0.1 Score=48.67 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACH 88 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~ 88 (456)
+.|.|++|+||||+++.+++
T Consensus 78 I~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999994
No 415
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=91.19 E-value=1.2 Score=43.43 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=16.1
Q ss_pred eEEEECCCCCcHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAAC 87 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~ 87 (456)
++++.+|+|+|||.+....+
T Consensus 76 ~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 76 DVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CEEEECCTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCchHHHHHHH
Confidence 49999999999997655433
No 416
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.18 E-value=0.11 Score=45.09 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.|++|+||||+++.++...
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998864
No 417
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=91.14 E-value=1.3 Score=41.54 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+.|.|.||+||||+++++...
T Consensus 10 V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 10 VAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999864
No 418
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=91.10 E-value=1.3 Score=47.48 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+.|.||.|+||||+++.++..
T Consensus 610 ~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 610 LIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 899999999999999998764
No 419
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.08 E-value=0.098 Score=47.23 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
++|.|++|+||||.++.+++.+..
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 899999999999999999998853
No 420
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=91.07 E-value=0.65 Score=40.94 Aligned_cols=23 Identities=30% Similarity=0.683 Sum_probs=20.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+.+++.|++|+|||+++.++...
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 45999999999999999998765
No 421
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.07 E-value=0.13 Score=50.32 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=21.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++|.||+|+|||+++..+++.+.
T Consensus 5 i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHT
T ss_pred EEEECcchhhHHHHHHHHHHHCC
Confidence 88999999999999999999874
No 422
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=91.04 E-value=1 Score=40.48 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=14.9
Q ss_pred eEEEECCCCCcHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMI 84 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~ 84 (456)
++++.+|+|+|||.+..
T Consensus 68 ~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 68 DMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CEEEEECTTSCHHHHHH
T ss_pred CEEEECCCcCHHHHHHH
Confidence 58999999999998744
No 423
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.00 E-value=0.11 Score=53.17 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=22.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
+++.|.||+||||+++.+++.+..
T Consensus 38 IvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 899999999999999999998743
No 424
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.90 E-value=0.12 Score=46.89 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=21.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.|.|++|+||||+++.+++.+.
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999874
No 425
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.88 E-value=0.11 Score=47.24 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++.-+
T Consensus 34 ~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 8999999999999999998654
No 426
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.87 E-value=0.075 Score=45.74 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=22.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.+.|.|++|+||||+++.+...+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4789999999999999999998754
No 427
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.87 E-value=0.13 Score=46.84 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.+.|.||.|+||||+++.++.-+
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999998754
No 428
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=90.74 E-value=1.6 Score=48.22 Aligned_cols=52 Identities=15% Similarity=0.018 Sum_probs=29.0
Q ss_pred CcchhccCCCCccccc--ccHHHHHHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHH
Q psy12150 33 VPWVEKYRPKTIDDVI--EQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87 (456)
Q Consensus 33 ~~w~eky~P~~~~~iv--g~~~~~~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~ 87 (456)
.||.+...|.....+. -.+.....+..... + .++++.+|+|+|||..+....
T Consensus 69 ~~~~~~~~p~~~~~~~f~L~~~Q~eai~~l~~-g--~~vLV~apTGSGKTlva~lai 122 (1010)
T 2xgj_A 69 TPIAEHKRVNEARTYPFTLDPFQDTAISCIDR-G--ESVLVSAHTSAGKTVVAEYAI 122 (1010)
T ss_dssp CCGGGCCCSSCSCCCSSCCCHHHHHHHHHHHH-T--CEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCcccChhhHHhCCCCCCHHHHHHHHHHHc-C--CCEEEECCCCCChHHHHHHHH
Confidence 4565555453311111 12333334444333 3 259999999999999875433
No 429
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=90.11 E-value=0.046 Score=47.98 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=19.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
-.+++.|++|+|||+++..+...
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 34999999999999999888754
No 430
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.68 E-value=0.15 Score=48.08 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.|.||.|+||||+++.++..+.
T Consensus 103 i~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998764
No 431
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=90.66 E-value=0.17 Score=52.21 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=21.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
++|.|.+|+||||+++.+++.+.
T Consensus 399 I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 399 IFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEeecCCCCCHHHHHHHHHHHhc
Confidence 89999999999999999999875
No 432
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.66 E-value=0.17 Score=45.69 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
+-|.|+||+||||.++.+++.++.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~ 34 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGI 34 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTC
T ss_pred eeeECCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999998753
No 433
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.64 E-value=0.12 Score=44.42 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACH 88 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~ 88 (456)
.++|.|++|+|||++++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999999876
No 434
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=90.63 E-value=1.2 Score=48.63 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACH 88 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~ 88 (456)
++|.||.|+||||+.+.++.
T Consensus 676 ~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 676 MIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEEESCCCHHHHHHHHHHHH
T ss_pred EEEECCCCCchHHHHHHHHH
Confidence 89999999999999998764
No 435
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.56 E-value=0.15 Score=42.97 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
.+++.|++|+|||++++++...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 3899999999999999998754
No 436
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.55 E-value=0.11 Score=46.84 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++.-+
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8899999999999999998654
No 437
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.54 E-value=0.15 Score=42.94 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+.+.|++|+|||++++++...
T Consensus 6 v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999863
No 438
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.53 E-value=0.15 Score=49.57 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCCeEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 55 SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 55 ~~l~~~l~~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.+.-.++.|. .++|.||+|+||||++++++..+.
T Consensus 166 ~~l~~~i~~G~--~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 166 SFLRRAVQLER--VIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHHHHHHTTC--CEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHHHHHHhcCC--EEEEECCCCCCHHHHHHHHHhcCC
Confidence 44544555553 489999999999999999998654
No 439
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.51 E-value=0.12 Score=46.07 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++..+
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8899999999999999998754
No 440
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.50 E-value=0.28 Score=44.76 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=26.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccccceEEee
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELN 103 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n 103 (456)
+++.|.+|+||||++..++..+. ...+.-++..+
T Consensus 17 ~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D 50 (262)
T 1yrb_A 17 VVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLD 50 (262)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 89999999999999999998876 44433344433
No 441
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=90.47 E-value=0.25 Score=50.72 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHh--cCCCCeEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 50 QQEVVSVLKKCLS--GADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 50 ~~~~~~~l~~~l~--~~~~~~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
+.++...++.... ......++|.|++|+||||+++.+++.+..
T Consensus 354 r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 354 RPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 3455566666652 222223899999999999999999998753
No 442
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=90.47 E-value=0.17 Score=44.71 Aligned_cols=28 Identities=11% Similarity=0.008 Sum_probs=24.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCcc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGDMY 95 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~~~ 95 (456)
.+.|.|++|+|||++++.+++.++...+
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 3899999999999999999999865433
No 443
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.44 E-value=0.12 Score=46.88 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++..+
T Consensus 34 ~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 34 VAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
No 444
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.40 E-value=0.17 Score=42.41 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+++.|++|+|||++++++...
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999999865
No 445
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=90.39 E-value=1.3 Score=41.69 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+.+.|.||+||||++.++...
T Consensus 13 v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 13 VAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 999999999999999999864
No 446
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.39 E-value=0.21 Score=42.18 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHHH
Q psy12150 67 PHFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
..+++.|++|+|||++++++...
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34999999999999999999764
No 447
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.37 E-value=0.15 Score=43.76 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
.++|.|++|+|||+++..+.+.
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 3999999999999999999884
No 448
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.36 E-value=0.16 Score=45.47 Aligned_cols=25 Identities=28% Similarity=0.215 Sum_probs=22.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.+.|.|++|+||||.++.+++.+..
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3899999999999999999999854
No 449
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.31 E-value=0.18 Score=42.09 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
.+|+||.|+|||+++.++.-.+.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 899999999999999999887644
No 450
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.22 E-value=0.29 Score=55.77 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.|.||.|+||||+++.+...+.
T Consensus 447 vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 447 VALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EEEEECSSSCHHHHHHHHTTSSC
T ss_pred EEEEecCCCcHHHHHHHhccccc
Confidence 89999999999999999988653
No 451
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=90.13 E-value=0.44 Score=50.64 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=16.8
Q ss_pred CeEEEECCCCCcHHHHHHHH
Q psy12150 67 PHFLFYGPPGTGKTSTMIAA 86 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a~~l 86 (456)
.++++.||+|+|||+.+...
T Consensus 47 ~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHHHH
Confidence 35999999999999998443
No 452
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.09 E-value=0.16 Score=44.05 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
++++|++|+|||++++.++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999865
No 453
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.08 E-value=0.81 Score=43.94 Aligned_cols=86 Identities=13% Similarity=0.171 Sum_probs=66.4
Q ss_pred HHHHHHhcchHHHHHHHHHHhhhhhhcCCCCcccccchhcccCCCchHHHHHhh---hCChHHHHHHHHHHHHcCCCHHH
Q psy12150 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDSFQVLEKYIEDLILEAYSATQ 397 (456)
Q Consensus 321 ~~~~~~~~~~gd~r~~~~~lq~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~s~~d 397 (456)
++..+...+.|++|.+.+.++.+.... +..|+.+++.+.++......+.++++ .++...+...++.+...|.+...
T Consensus 202 a~~~l~~~~~G~~r~~~~~l~~~~~~~-~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 280 (373)
T 1jr3_A 202 ALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEA 280 (373)
T ss_dssp HHHHHHHHSSSCHHHHHHHHHHHHHHT-TTCBCHHHHHHHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHhc-CCcccHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCHHH
Confidence 355566778999999999998775432 34688888999999887776666654 47888888899999999999988
Q ss_pred HHHHHHHHHh
Q psy12150 398 LFDQFHDIVM 407 (456)
Q Consensus 398 i~~~l~~~~~ 407 (456)
++..+...+.
T Consensus 281 ~l~~l~~~~r 290 (373)
T 1jr3_A 281 LLVEMLGLLH 290 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777755443
No 454
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=90.08 E-value=0.66 Score=43.72 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
++|.|++|+|||++...+...
T Consensus 6 I~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 6 LLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEECCTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999998754
No 455
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.99 E-value=0.17 Score=42.42 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
.+++.|++|+|||++++.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3899999999999999999864
No 456
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.97 E-value=0.14 Score=47.22 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++.-+
T Consensus 35 ~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8899999999999999998754
No 457
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=89.95 E-value=0.71 Score=32.78 Aligned_cols=59 Identities=15% Similarity=0.055 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhC
Q psy12150 203 TRLQYICEQESV-MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261 (456)
Q Consensus 203 ~~l~~~~~~~~~-~i~~~~l~~L~~~s~gdlr~~~~~L~~~~~~~~~~~It~~~v~~~~~ 261 (456)
..+..+++..|+ .+++.+...|.+........+.......+..++++.|+.+||+-++.
T Consensus 5 ~~i~~iLk~~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~ 64 (68)
T 1taf_A 5 QVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATE 64 (68)
T ss_dssp HHHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 456778888887 68999999999887666666666666666667899999999987764
No 458
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.92 E-value=0.17 Score=46.95 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||+|+||||+++.++...
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999865
No 459
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.88 E-value=0.17 Score=46.29 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+.|.||.|+||||+++.++..
T Consensus 32 ~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 32 HALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 889999999999999999985
No 460
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=89.86 E-value=0.73 Score=46.09 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Q psy12150 66 LPHFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 66 ~~~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
.+.++|.|.||+||||+..++...
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 345999999999999999998653
No 461
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=89.85 E-value=1.1 Score=46.82 Aligned_cols=81 Identities=14% Similarity=0.105 Sum_probs=49.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCccccceEEeeCCCCcChHHHHHHHHHHHHhhccCCCCCC--CCCCCcEEEEEcC
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG--KPCPPFKIVILDE 145 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~~~~~~~~~~e~n~~~~~~~~~i~~~l~~~~~~~~~~~~~~~--~~~~~~~iviIDE 145 (456)
..+|+|++|.|||+++-.++..+... ..+.+........+.+... .......+.. ..+....+|||||
T Consensus 194 ~~vlta~RGRGKSa~lG~~~a~~~~~------~~vtAP~~~a~~~l~~~~~----~~i~~~~Pd~~~~~~~~~dlliVDE 263 (671)
T 2zpa_A 194 VAAVTAARGRGKSALAGQLISRIAGR------AIVTAPAKASTDVLAQFAG----EKFRFIAPDALLASDEQADWLVVDE 263 (671)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSSSC------EEEECSSCCSCHHHHHHHG----GGCCBCCHHHHHHSCCCCSEEEEET
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHhC------cEEECCCHHHHHHHHHHhh----CCeEEeCchhhhhCcccCCEEEEEc
Confidence 48999999999999999999887532 2444555455554444322 1111111110 0112345999999
Q ss_pred CCCccHHHHHHHH
Q psy12150 146 ADSMTHAAQAALR 158 (456)
Q Consensus 146 ~d~l~~~~~~~Ll 158 (456)
+-.+.......|+
T Consensus 264 AAaIp~pll~~ll 276 (671)
T 2zpa_A 264 AAAIPAPLLHQLV 276 (671)
T ss_dssp GGGSCHHHHHHHH
T ss_pred hhcCCHHHHHHHH
Confidence 9999876555444
No 462
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.81 E-value=0.079 Score=48.84 Aligned_cols=24 Identities=13% Similarity=0.014 Sum_probs=21.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
.++|.|++|+||||+++.+++.+.
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 489999999999999999998863
No 463
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=89.80 E-value=0.19 Score=42.13 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=18.8
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACH 88 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~ 88 (456)
.+++.|++|+|||++++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999999863
No 464
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=89.79 E-value=0.79 Score=45.72 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=15.2
Q ss_pred eEEEECCCCCcHHHH-HHHHH
Q psy12150 68 HFLFYGPPGTGKTST-MIAAC 87 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~-a~~l~ 87 (456)
.+++.||+|+|||.. +-.+.
T Consensus 21 ~~lv~a~TGsGKT~~~~~~~l 41 (451)
T 2jlq_A 21 LTIMDLHPGAGKTKRILPSIV 41 (451)
T ss_dssp EEEECCCTTSSCCTTHHHHHH
T ss_pred eEEEECCCCCCHhhHHHHHHH
Confidence 369999999999993 44443
No 465
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.79 E-value=0.18 Score=46.69 Aligned_cols=41 Identities=20% Similarity=0.338 Sum_probs=27.9
Q ss_pred CcEEEEEcCCC-CccHHHHHHHHHHHHhccC-cceEEEEecCc
Q psy12150 137 PFKIVILDEAD-SMTHAAQAALRRTMEKETK-STRFCLICNYV 177 (456)
Q Consensus 137 ~~~iviIDE~d-~l~~~~~~~Ll~~le~~~~-~~~lIl~~~~~ 177 (456)
+.+++++||.- .|.......+.+++.+... ...+|+++.+.
T Consensus 182 ~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~ 224 (267)
T 2zu0_C 182 EPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ 224 (267)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCH
Confidence 44699999974 5777777888888876532 34455666654
No 466
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.76 E-value=0.15 Score=47.42 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++.-+
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998754
No 467
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.75 E-value=0.19 Score=42.01 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
.+++.|++|+|||++++++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 468
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.75 E-value=0.15 Score=46.40 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++..+
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
No 469
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.75 E-value=0.15 Score=46.91 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++.-+
T Consensus 36 ~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8899999999999999998754
No 470
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.70 E-value=0.48 Score=41.55 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=23.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcCCcc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFGDMY 95 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~~~~ 95 (456)
+.|-|..|+||||.++.+++.+.....
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~ 29 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGK 29 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 578899999999999999998865443
No 471
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=89.67 E-value=0.18 Score=45.32 Aligned_cols=24 Identities=13% Similarity=-0.071 Sum_probs=22.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
+.|.|++|||||++++.+++.++.
T Consensus 17 I~i~g~~gsGk~~i~~~la~~lg~ 40 (223)
T 3hdt_A 17 ITIEREYGSGGRIVGKKLAEELGI 40 (223)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTC
T ss_pred EEEeCCCCCCHHHHHHHHHHHcCC
Confidence 899999999999999999999864
No 472
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.64 E-value=0.16 Score=46.51 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++..+
T Consensus 38 ~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 38 IGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
No 473
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.63 E-value=0.16 Score=45.83 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++..+
T Consensus 37 ~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 37 LAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8899999999999999998765
No 474
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=89.63 E-value=0.96 Score=50.52 Aligned_cols=21 Identities=24% Similarity=0.142 Sum_probs=17.3
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACH 88 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~ 88 (456)
++++.||+|+|||..+...+.
T Consensus 201 dvLV~ApTGSGKTlva~l~i~ 221 (1108)
T 3l9o_A 201 SVLVSAHTSAGKTVVAEYAIA 221 (1108)
T ss_dssp CEEEECCSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHH
Confidence 599999999999998755443
No 475
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.63 E-value=0.16 Score=49.15 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++.-.
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 8899999999999999999754
No 476
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.62 E-value=0.16 Score=46.26 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++..+
T Consensus 35 ~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8899999999999999998754
No 477
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=89.62 E-value=0.21 Score=41.85 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
.+++.|++|+|||+++.++...
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3999999999999999999764
No 478
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.53 E-value=0.72 Score=47.91 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.+.||.|+||||+++.++..+
T Consensus 384 ~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 384 VALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCc
Confidence 8999999999999999998754
No 479
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.52 E-value=0.16 Score=46.87 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++..+
T Consensus 53 ~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 53 VVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCCcHHHHHHHHHcCC
Confidence 8899999999999999998754
No 480
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=89.49 E-value=1.5 Score=44.43 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=17.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
++++.+|+|+|||..+...+..
T Consensus 24 ~~l~~~~tGsGKT~~~~~~~~~ 45 (556)
T 4a2p_A 24 NALICAPTGSGKTFVSILICEH 45 (556)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEcCCCChHHHHHHHHHHH
Confidence 5899999999999887655543
No 481
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.48 E-value=0.21 Score=43.11 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=20.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Q psy12150 66 LPHFLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 66 ~~~~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
...+++.|++|+|||+++..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345999999999999999999754
No 482
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.44 E-value=0.18 Score=48.86 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=21.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.|.||+|+||||+++.++..+.
T Consensus 173 ~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 173 VAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp EEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998754
No 483
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=89.43 E-value=0.19 Score=42.46 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+++.|++|+|||++++++...
T Consensus 9 i~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGG
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 999999999999999998854
No 484
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.43 E-value=0.22 Score=51.21 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=22.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
+.|.|++|+||||++++++..+..
T Consensus 372 I~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 372 VFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCChHHHHHHHHHHhhcc
Confidence 899999999999999999998853
No 485
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.42 E-value=0.22 Score=48.19 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.|.||.|+||||+++.++..+.
T Consensus 160 i~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHhhcc
Confidence 89999999999999999998764
No 486
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.41 E-value=0.21 Score=42.84 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
++|.|++|+|||++++++...
T Consensus 10 i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 999999999999999999863
No 487
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.37 E-value=0.22 Score=42.93 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q psy12150 68 HFLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
.++|.|++|+|||++++++...-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 39999999999999999998753
No 488
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.35 E-value=0.23 Score=47.32 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~~ 92 (456)
+.+.|++|+||||++..++..+..
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999987753
No 489
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.28 E-value=0.18 Score=46.25 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++..+
T Consensus 29 ~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 29 LHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 8899999999999999998754
No 490
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.27 E-value=0.25 Score=47.37 Aligned_cols=23 Identities=35% Similarity=0.393 Sum_probs=21.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQLF 91 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l~ 91 (456)
+.|.|++|+||||++++++..+.
T Consensus 58 v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 58 VGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhhh
Confidence 99999999999999999997653
No 491
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.24 E-value=0.18 Score=46.43 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++..+
T Consensus 44 ~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 44 FGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
No 492
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=89.22 E-value=0.21 Score=42.29 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQ 89 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~ 89 (456)
+++.|++|+|||++++++...
T Consensus 12 i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 12 LVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 999999999999999999875
No 493
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.16 E-value=0.18 Score=46.54 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++..+
T Consensus 49 ~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 49 CALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 8999999999999999998754
No 494
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.15 E-value=0.18 Score=46.86 Aligned_cols=42 Identities=21% Similarity=0.322 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCC-CccHHHHHHHHHHHHhccC--cceEEEEecCc
Q psy12150 136 PPFKIVILDEAD-SMTHAAQAALRRTMEKETK--STRFCLICNYV 177 (456)
Q Consensus 136 ~~~~iviIDE~d-~l~~~~~~~Ll~~le~~~~--~~~lIl~~~~~ 177 (456)
.+.+++++||.- .|.......+.+.|.+... ...+|+++.+.
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~ 217 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL 217 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 345699999964 5667777778887776532 34455666654
No 495
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.15 E-value=0.18 Score=46.67 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++.-+
T Consensus 40 ~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 8899999999999999998754
No 496
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=89.14 E-value=2.7 Score=42.93 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=14.6
Q ss_pred CeEEEECCCCCcHHHHH
Q psy12150 67 PHFLFYGPPGTGKTSTM 83 (456)
Q Consensus 67 ~~~Ll~G~~G~GKT~~a 83 (456)
.++++.+|+|+|||.+.
T Consensus 112 ~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 112 HDVIARAKTGTGKTFAF 128 (563)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCccHHH
Confidence 35999999999999853
No 497
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.12 E-value=0.2 Score=48.42 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+.+.++.-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHCCC
Confidence 8899999999999999999754
No 498
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.06 E-value=0.19 Score=42.77 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=18.9
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q psy12150 68 HFLFYGPPGTGKTSTMIAACH 88 (456)
Q Consensus 68 ~~Ll~G~~G~GKT~~a~~l~~ 88 (456)
.+++.|++|+|||+++..+..
T Consensus 20 ~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 499999999999999988863
No 499
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.06 E-value=0.18 Score=46.97 Aligned_cols=22 Identities=27% Similarity=0.458 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
+.|.||.|+||||+++.++..+
T Consensus 50 ~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 8899999999999999998754
No 500
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.06 E-value=0.25 Score=42.57 Aligned_cols=22 Identities=14% Similarity=0.070 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q psy12150 69 FLFYGPPGTGKTSTMIAACHQL 90 (456)
Q Consensus 69 ~Ll~G~~G~GKT~~a~~l~~~l 90 (456)
++|.|++|+|||+++..+...-
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 9999999999999999888754
Done!