Your job contains 1 sequence.
>psy12150
MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC
LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF
AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI
IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ
SCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQ
FHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV
TGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI
LEKLAECNARLQDGASEYIQILDLGSIVIKANKTAV
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy12150
(456 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0030871 - symbol:CG8142 species:7227 "Drosophila m... 957 2.9e-96 1
UNIPROTKB|Q29RS9 - symbol:RFC4 "Uncharacterized protein" ... 798 1.3e-94 2
UNIPROTKB|C9JZI1 - symbol:RFC4 "Replication factor C subu... 798 8.9e-94 2
UNIPROTKB|F1NEW1 - symbol:RFC4 "Uncharacterized protein" ... 923 1.1e-92 1
UNIPROTKB|F1NIY0 - symbol:RFC4 "Uncharacterized protein" ... 923 1.1e-92 1
UNIPROTKB|E2R2M6 - symbol:RFC4 "Uncharacterized protein" ... 916 6.3e-92 1
UNIPROTKB|P35249 - symbol:RFC4 "Replication factor C subu... 905 9.3e-91 1
RGD|1310142 - symbol:Rfc4 "replication factor C (activato... 901 2.5e-90 1
ZFIN|ZDB-GENE-040824-3 - symbol:rfc4 "replication factor ... 896 8.3e-90 1
UNIPROTKB|F1SFI3 - symbol:RFC4 "Uncharacterized protein" ... 891 2.8e-89 1
MGI|MGI:2146571 - symbol:Rfc4 "replication factor C (acti... 890 3.6e-89 1
RGD|1593197 - symbol:LOC367042 "similar to Activator 1 37... 765 6.3e-76 1
ASPGD|ASPL0000039105 - symbol:AN2969 species:162425 "Emer... 643 2.0e-73 2
POMBASE|SPAC23D3.02 - symbol:rfc2 "DNA replication factor... 734 1.2e-72 1
SGD|S000003829 - symbol:RFC2 "Subunit of heteropentameric... 720 3.7e-71 1
UNIPROTKB|C9J8M3 - symbol:RFC4 "Replication factor C subu... 702 3.0e-69 1
DICTYBASE|DDB_G0286027 - symbol:rfc4 "replication factor ... 694 2.1e-68 1
CGD|CAL0002015 - symbol:RFC2 species:5476 "Candida albica... 620 1.5e-60 1
GENEDB_PFALCIPARUM|PFB0840w - symbol:PFB0840w "replicatio... 583 1.2e-56 1
UNIPROTKB|O96260 - symbol:PFB0840w "Replication factor C,... 583 1.2e-56 1
DICTYBASE|DDB_G0282235 - symbol:rfc5 "replication factor ... 581 2.0e-56 1
ASPGD|ASPL0000017750 - symbol:AN8064 species:162425 "Emer... 522 5.6e-56 3
POMBASE|SPAC27E2.10c - symbol:rfc3 "DNA replication facto... 521 9.9e-56 2
ZFIN|ZDB-GENE-040907-1 - symbol:rfc5 "replication factor ... 566 7.8e-55 1
WB|WBGene00004340 - symbol:rfc-4 species:6239 "Caenorhabd... 564 1.3e-54 1
UNIPROTKB|P53016 - symbol:rfc-4 "Replication factor C sub... 564 1.3e-54 1
CGD|CAL0003213 - symbol:RCF3 species:5476 "Candida albica... 489 1.6e-53 2
UNIPROTKB|Q32PI3 - symbol:RFC5 "Uncharacterized protein" ... 553 1.9e-53 1
UNIPROTKB|F1RKG3 - symbol:RFC5 "Uncharacterized protein" ... 550 3.8e-53 1
FB|FBgn0032244 - symbol:RfC3 "Replication factor C subuni... 547 8.0e-53 1
SGD|S000005234 - symbol:RFC3 "Subunit of heteropentameric... 547 8.0e-53 1
UNIPROTKB|P40937 - symbol:RFC5 "Replication factor C subu... 544 1.7e-52 1
MGI|MGI:1919401 - symbol:Rfc5 "replication factor C (acti... 544 1.7e-52 1
RGD|1309280 - symbol:Rfc5 "replication factor C (activato... 544 1.7e-52 1
UNIPROTKB|E2RCF4 - symbol:RFC5 "Uncharacterized protein" ... 539 5.6e-52 1
UNIPROTKB|J9NUF8 - symbol:RFC5 "Uncharacterized protein" ... 539 5.6e-52 1
GENEDB_PFALCIPARUM|PF14_0601 - symbol:PF14_0601 "replicat... 538 7.2e-52 1
UNIPROTKB|Q8IKK4 - symbol:PF14_0601 "Replication factor C... 538 7.2e-52 1
UNIPROTKB|C9JTT7 - symbol:RFC4 "Replication factor C subu... 526 1.3e-50 1
WB|WBGene00018409 - symbol:F44B9.8 species:6239 "Caenorha... 525 1.7e-50 1
TAIR|locus:2204710 - symbol:RFC3 "replication factor C su... 516 1.5e-49 1
WB|WBGene00004338 - symbol:rfc-2 species:6239 "Caenorhabd... 487 1.8e-46 1
SGD|S000005454 - symbol:RFC4 "Subunit of heteropentameric... 484 3.8e-46 1
TAIR|locus:2015233 - symbol:RFC2 "replication factor C 2"... 483 4.8e-46 1
DICTYBASE|DDB_G0291868 - symbol:rfc2 "replication factor ... 479 1.3e-45 1
POMBASE|SPAC1687.03c - symbol:rfc4 "DNA replication facto... 479 1.3e-45 1
GENEDB_PFALCIPARUM|PFL2005w - symbol:PFL2005w "replicatio... 469 1.5e-44 1
UNIPROTKB|Q8I512 - symbol:PFL2005w "Replication factor C ... 469 1.5e-44 1
CGD|CAL0000922 - symbol:RFC4 species:5476 "Candida albica... 467 2.4e-44 1
MGI|MGI:1341868 - symbol:Rfc2 "replication factor C (acti... 466 3.1e-44 1
UNIPROTKB|P35250 - symbol:RFC2 "Replication factor C subu... 464 5.0e-44 1
ZFIN|ZDB-GENE-050306-29 - symbol:rfc2 "replication factor... 463 6.4e-44 1
UNIPROTKB|P53033 - symbol:RFC2 "Replication factor C subu... 462 8.1e-44 1
UNIPROTKB|Q05B83 - symbol:RFC2 "Replication factor C subu... 462 8.1e-44 1
UNIPROTKB|E2QSU1 - symbol:RFC2 "Uncharacterized protein" ... 462 8.1e-44 1
UNIPROTKB|F6ULR2 - symbol:RFC2 "Uncharacterized protein" ... 462 8.1e-44 1
RGD|621198 - symbol:Rfc2 "replication factor C (activator... 462 8.1e-44 1
FB|FBgn0260985 - symbol:RfC4 "Replication factor C subuni... 443 8.4e-42 1
UNIPROTKB|I3LHX6 - symbol:RFC2 "Uncharacterized protein" ... 396 8.0e-37 1
UNIPROTKB|F8W9B4 - symbol:RFC5 "Replication factor C subu... 356 1.4e-32 1
UNIPROTKB|C9JXZ7 - symbol:RFC4 "Replication factor C subu... 342 4.2e-31 1
SGD|S000000291 - symbol:RFC5 "Subunit of heteropentameric... 214 7.1e-26 2
TAIR|locus:2180315 - symbol:EMB2775 "EMBRYO DEFECTIVE 277... 180 3.2e-24 2
WB|WBGene00004339 - symbol:rfc-3 species:6239 "Caenorhabd... 214 8.4e-22 2
UNIPROTKB|Q18547 - symbol:rfc-3 "Protein RFC-3" species:6... 214 8.4e-22 2
UNIPROTKB|F1P3C0 - symbol:RFC3 "Uncharacterized protein" ... 199 2.0e-21 2
CGD|CAL0004366 - symbol:RFC5 species:5476 "Candida albica... 177 1.1e-20 2
ZFIN|ZDB-GENE-020809-3 - symbol:rfc3 "replication factor ... 190 1.2e-20 2
RGD|1306832 - symbol:Rfc3 "replication factor C (activato... 191 2.0e-20 2
GENEDB_PFALCIPARUM|PF11_0117 - symbol:PF11_0117 "replicat... 174 3.3e-20 2
UNIPROTKB|Q8IIQ1 - symbol:PF11_0117 "Replication factor C... 174 3.3e-20 2
UNIPROTKB|G4NAB7 - symbol:MGG_03202 "Replication factor C... 183 4.0e-20 2
UNIPROTKB|F1RSR4 - symbol:RFC3 "Uncharacterized protein" ... 187 6.0e-20 2
MGI|MGI:1916513 - symbol:Rfc3 "replication factor C (acti... 183 1.8e-19 2
UNIPROTKB|E2R7L0 - symbol:RFC3 "Uncharacterized protein" ... 183 2.9e-19 2
UNIPROTKB|P40938 - symbol:RFC3 "Replication factor C subu... 183 2.9e-19 2
UNIPROTKB|Q2TBV1 - symbol:RFC3 "Replication factor C subu... 180 4.2e-19 2
FB|FBgn0028700 - symbol:RfC38 "Replication factor C 38kD ... 172 1.2e-18 2
UNIPROTKB|H7C1P0 - symbol:RFC4 "Replication factor C subu... 223 7.2e-18 1
TIGR_CMR|CHY_2675 - symbol:CHY_2675 "putative DNA polymer... 243 8.0e-18 1
DICTYBASE|DDB_G0293702 - symbol:rfc3 "replication factor ... 156 2.4e-17 2
ASPGD|ASPL0000001589 - symbol:AN6300 species:162425 "Emer... 161 4.4e-17 2
UNIPROTKB|H7C5P4 - symbol:RFC2 "Replication factor C subu... 212 1.2e-16 1
POMBASE|SPBC83.14c - symbol:rfc5 "DNA replication factor ... 154 1.1e-15 2
TIGR_CMR|DET_0585 - symbol:DET_0585 "DNA polymerase III, ... 225 1.1e-15 1
UNIPROTKB|P09122 - symbol:dnaX "DNA polymerase III subuni... 211 4.2e-14 1
UNIPROTKB|Q97RF7 - symbol:dnaX "DNA polymerase III, gamma... 208 8.7e-14 1
TIGR_CMR|BA_0019 - symbol:BA_0019 "DNA polymerase III, ga... 207 1.2e-13 1
TIGR_CMR|CJE_1293 - symbol:CJE_1293 "DNA polymerase III, ... 204 2.1e-13 1
TAIR|locus:2012497 - symbol:AT1G14460 species:3702 "Arabi... 197 4.4e-12 1
UNIPROTKB|E7DN81 - symbol:E7DN81 "DnaX DNA polymerase III... 184 1.2e-11 1
UNIPROTKB|Q9KT51 - symbol:VC_1054 "DNA polymerase III, su... 187 2.8e-11 1
TIGR_CMR|VC_1054 - symbol:VC_1054 "DNA polymerase III, su... 187 2.8e-11 1
TAIR|locus:2121934 - symbol:AT4G24790 species:3702 "Arabi... 188 3.0e-11 1
GENEDB_PFALCIPARUM|PFB0895c - symbol:PFB0895c "replicatio... 171 4.4e-11 2
UNIPROTKB|O96271 - symbol:PFB0895c "Replication factor C ... 171 4.4e-11 2
TAIR|locus:2065299 - symbol:STI "STICHEL" species:3702 "A... 185 1.0e-10 1
TIGR_CMR|GSU_0094 - symbol:GSU_0094 "DNA polymerase III, ... 179 1.6e-10 1
TAIR|locus:2172013 - symbol:AT5G45720 species:3702 "Arabi... 182 1.6e-10 1
WB|WBGene00004337 - symbol:rfc-1 species:6239 "Caenorhabd... 180 2.2e-10 1
WARNING: Descriptions of 42 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0030871 [details] [associations]
symbol:CG8142 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0031122 "cytoplasmic microtubule organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0003677
GO:GO:0006260 EMBL:AE014298 GO:GO:0046331 GO:GO:0017111
GO:GO:0031122 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
GeneTree:ENSGT00550000074917 HSSP:Q8U4J3 EMBL:AY069598
RefSeq:NP_573245.1 UniGene:Dm.2050 SMR:Q9VX15 IntAct:Q9VX15
MINT:MINT-847740 STRING:Q9VX15 EnsemblMetazoa:FBtr0074472
GeneID:32763 KEGG:dme:Dmel_CG8142 UCSC:CG8142-RA
FlyBase:FBgn0030871 InParanoid:Q9VX15 OMA:VGQMMEQ OrthoDB:EOG4Q2BXJ
GenomeRNAi:32763 NextBio:780237 Uniprot:Q9VX15
Length = 353
Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
Identities = 183/321 (57%), Positives = 240/321 (74%)
Query: 1 MEAFLRTGKLGKDAPXXXXXXXXXXXXXRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGK R P PWVEKYRP+ +DDV+EQ EVV+VL+KC
Sbjct: 1 MQAFLKTGK---STAGSGDKSQGTPAARRKPPAPWVEKYRPRNVDDVVEQSEVVAVLRKC 57
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ G DLP+ L YGPPGTGKTST++AA Q+FGDM+++RILELNASD+RGI V+R K+K F
Sbjct: 58 VEGGDLPNMLLYGPPGTGKTSTILAASRQIFGDMFKDRILELNASDERGINVVRTKIKNF 117
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
+Q +AS DGKPCPPFKI+ILDEADSMTHAAQ+ALRRTMEKE++STRFCLICNYVS I
Sbjct: 118 SQLSASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRI 177
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I P+TSRCSKFRFK L E+ ++ RL+YICE E V + A +++V+ SGGD+RRAIT LQ
Sbjct: 178 IVPITSRCSKFRFKALGEDKVIDRLKYICEMEGVKIEDDAYKSIVKISGGDLRRAITTLQ 237
Query: 241 SCARLKGGEGIVNE-DVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
SC RLKG E I+N D+ E++GVIP+ ++E L+V +++ LE+++ ++ AYS Q
Sbjct: 238 SCYRLKGPEHIINTADLFEMSGVIPEYYLEDYLEVCRSGNYERLEQFVREIGFSAYSVGQ 297
Query: 297 LFDQFHDIVMLASSLSDKQKA 317
+ +QF + ++ L+D QKA
Sbjct: 298 MMEQFVEFIVHHPGLNDPQKA 318
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 65/137 (47%), Positives = 95/137 (69%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE-DVLEVTGVIPNPWIEKLLKV---D 376
A +++V+ SGGD+RRAIT LQSC RLKG E I+N D+ E++GVIP ++E L+V
Sbjct: 217 AYKSIVKISGGDLRRAITTLQSCYRLKGPEHIINTADLFEMSGVIPEYYLEDYLEVCRSG 276
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+++ LE+++ ++ AYS Q+ +QF + ++ L+D QKA I +KL EC RLQDG S
Sbjct: 277 NYERLEQFVREIGFSAYSVGQMMEQFVEFIVHHPGLNDPQKATICDKLGECCFRLQDGGS 336
Query: 437 EYIQILDLGSIVIKANK 453
EY+QI+DLG +I A K
Sbjct: 337 EYLQIMDLGCCIILALK 353
>UNIPROTKB|Q29RS9 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917
OMA:QQLSQNC EMBL:DAAA02001847 EMBL:DAAA02001846 EMBL:BC114041
IPI:IPI00728867 RefSeq:NP_001039359.1 UniGene:Bt.102331
STRING:Q29RS9 Ensembl:ENSBTAT00000045810 GeneID:504637
KEGG:bta:504637 NextBio:20866768 Uniprot:Q29RS9
Length = 337
Score = 798 (286.0 bits), Expect = 1.3e-94, Sum P(2) = 1.3e-94
Identities = 158/267 (59%), Positives = 195/267 (73%)
Query: 1 MEAFLRTGKLGKDAPXX-----XXXXXXXXXXXRNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGASISTKPPPTKDRGVTATARSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVQVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTG 261
AIT LQS RL GG+ + + + ++ G
Sbjct: 241 AITFLQSATRLTGGKEVTEKVITDIAG 267
Score = 163 (62.4 bits), Expect = 1.3e-94, Sum P(2) = 1.3e-94
Identities = 36/76 (47%), Positives = 53/76 (69%)
Query: 379 QVLEKYIED----LILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
+V EK I D LI E ++ATQL +Q HD+V+ +LSDKQK++I EKLAE + L DG
Sbjct: 256 EVTEKVITDIAGDLINEGHAATQLVNQLHDVVVENDNLSDKQKSIITEKLAEVDKCLADG 315
Query: 435 ASEYIQILDLGSIVIK 450
A E++Q++ L + V++
Sbjct: 316 ADEHLQLISLCATVMQ 331
Score = 100 (40.3 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 31/105 (29%), Positives = 53/105 (50%)
Query: 268 IEKLLKVDSFQVLEKYIEDLI--LEAYSATQLFDQFHDIVMLASSL--SDKQ--KALFKA 321
+EK K F ++ Y+ +I L + + F D + L +DK+ K +
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEG 226
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPN 366
+ LV+ S GD+R+AIT LQS RL GG+ + + + ++ G + N
Sbjct: 227 IAYLVQVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAGDLIN 271
Score = 95 (38.5 bits), Expect = 1.9e-87, Sum P(2) = 1.9e-87
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 278 QVLEKYIED----LILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVE 327
+V EK I D LI E ++ATQL +Q HD+V+ +LSDKQK++ E L E
Sbjct: 256 EVTEKVITDIAGDLINEGHAATQLVNQLHDVVVENDNLSDKQKSIIT--EKLAE 307
>UNIPROTKB|C9JZI1 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 EMBL:AC112907 Pfam:PF08542 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925945
ProteinModelPortal:C9JZI1 SMR:C9JZI1 STRING:C9JZI1
Ensembl:ENST00000433496 ArrayExpress:C9JZI1 Bgee:C9JZI1
Uniprot:C9JZI1
Length = 336
Score = 798 (286.0 bits), Expect = 8.9e-94, Sum P(2) = 8.9e-94
Identities = 159/267 (59%), Positives = 196/267 (73%)
Query: 1 MEAFLRTGKLGKDAPXX-----XXXXXXXXXXXRNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E+V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTG 261
AIT LQS RL GG+ I + + ++ G
Sbjct: 241 AITFLQSATRLTGGKEITEKVITDIAG 267
Score = 155 (59.6 bits), Expect = 8.9e-94, Sum P(2) = 8.9e-94
Identities = 33/72 (45%), Positives = 52/72 (72%)
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+V+ DLI E ++ATQL +Q HD+V+ ++LSDKQK++I EKLAE + L DGA E+
Sbjct: 260 KVITDIAGDLIDEGHAATQLVNQLHDVVVE-NNLSDKQKSIITEKLAEVDKCLADGADEH 318
Query: 439 IQILDLGSIVIK 450
+Q++ L + V++
Sbjct: 319 LQLISLCATVMQ 330
Score = 96 (38.9 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 29/101 (28%), Positives = 48/101 (47%)
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLF------DQFHDIVMLASSLSDKQKALFKA 321
+EK K F ++ Y+ +I S F D+ +L + + K +
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEG 226
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 362
+ LV+ S GD+R+AIT LQS RL GG+ I + + ++ G
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAG 267
Score = 89 (36.4 bits), Expect = 8.1e-87, Sum P(2) = 8.1e-87
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 278 QVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVE 327
+V+ DLI E ++ATQL +Q HD+V+ ++LSDKQK++ E L E
Sbjct: 260 KVITDIAGDLIDEGHAATQLVNQLHDVVV-ENNLSDKQKSIIT--EKLAE 306
>UNIPROTKB|F1NEW1 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:AADN02020726 IPI:IPI00819051 PRIDE:F1NEW1
Ensembl:ENSGALT00000039711 ArrayExpress:F1NEW1 Uniprot:F1NEW1
Length = 362
Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
Identities = 191/334 (57%), Positives = 238/334 (71%)
Query: 1 MEAFLR-TGKLGKDAPXXXXXXXXXXXXX--RNKPVPWVEKYRPKTIDDVIEQQEVVSVL 57
M+AFL+ + P + KPVPWVEKYRPK +D+V Q EVV+VL
Sbjct: 1 MQAFLKGPSSISSKPPAAKERSAAGSSGEGKKLKPVPWVEKYRPKNVDEVAFQDEVVAVL 60
Query: 58 KKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDK 116
KK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R+R+LELNASD+RGIQVIR+K
Sbjct: 61 KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRQRVLELNASDERGIQVIREK 120
Query: 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
VK FAQ TASG DGK CPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICNY
Sbjct: 121 VKAFAQLTASGSRADGKVCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY 180
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
+S II+PLTSRCSKFRFKPL++ RL + E+E+V +A+ LV+ S GD+R+AI
Sbjct: 181 ISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAI 240
Query: 237 TCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYS 293
T LQS RL GG+ I + V E+ GVIP+ I+ LL SF+ LE ++LI E Y+
Sbjct: 241 TYLQSATRLMGGKEITEKTVTEIAGVIPRETIDGLLSACSSGSFEKLETVAKNLINEGYA 300
Query: 294 ATQLFDQFHDIVMLASSLSDKQKALFKALETLVE 327
QL +Q HDIV+ + SDKQK++ +E L E
Sbjct: 301 VAQLVNQLHDIVVESEDFSDKQKSII--VEKLAE 332
Score = 300 (110.7 bits), Expect = 1.3e-26, P = 1.3e-26
Identities = 75/192 (39%), Positives = 109/192 (56%)
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLF------DQFHDIVMLASSLSDKQKALFKA 321
+EK K F ++ YI +I S F D+ +L S + K +A
Sbjct: 165 MEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKENVKITSEA 224
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSF 378
+ LV+ S GD+R+AIT LQS RL GG+ I + V E+ GVIP I+ LL SF
Sbjct: 225 VSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIAGVIPRETIDGLLSACSSGSF 284
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+ LE ++LI E Y+ QL +Q HDIV+ + SDKQK++I+EKLAE + L DGA EY
Sbjct: 285 EKLETVAKNLINEGYAVAQLVNQLHDIVVESEDFSDKQKSIIVEKLAEVDKCLADGADEY 344
Query: 439 IQILDLGSIVIK 450
+Q++ L ++V++
Sbjct: 345 LQLISLCALVMQ 356
>UNIPROTKB|F1NIY0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917
EMBL:AADN02020726 IPI:IPI00574772 Ensembl:ENSGALT00000014162
ArrayExpress:F1NIY0 Uniprot:F1NIY0
Length = 359
Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
Identities = 191/334 (57%), Positives = 238/334 (71%)
Query: 1 MEAFLR-TGKLGKDAPXXXXXXXXXXXXX--RNKPVPWVEKYRPKTIDDVIEQQEVVSVL 57
M+AFL+ + P + KPVPWVEKYRPK +D+V Q EVV+VL
Sbjct: 1 MQAFLKGPSSISSKPPAAKERSAAGSSGEGKKLKPVPWVEKYRPKNVDEVAFQDEVVAVL 60
Query: 58 KKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDK 116
KK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R+R+LELNASD+RGIQVIR+K
Sbjct: 61 KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRQRVLELNASDERGIQVIREK 120
Query: 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
VK FAQ TASG DGK CPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICNY
Sbjct: 121 VKAFAQLTASGSRADGKVCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY 180
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
+S II+PLTSRCSKFRFKPL++ RL + E+E+V +A+ LV+ S GD+R+AI
Sbjct: 181 ISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAI 240
Query: 237 TCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYS 293
T LQS RL GG+ I + V E+ GVIP+ I+ LL SF+ LE ++LI E Y+
Sbjct: 241 TYLQSATRLMGGKEITEKTVTEIAGVIPRETIDGLLSACSSGSFEKLETVAKNLINEGYA 300
Query: 294 ATQLFDQFHDIVMLASSLSDKQKALFKALETLVE 327
QL +Q HDIV+ + SDKQK++ +E L E
Sbjct: 301 VAQLVNQLHDIVVESEDFSDKQKSII--VEKLAE 332
Score = 300 (110.7 bits), Expect = 1.3e-26, P = 1.3e-26
Identities = 75/192 (39%), Positives = 109/192 (56%)
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLF------DQFHDIVMLASSLSDKQKALFKA 321
+EK K F ++ YI +I S F D+ +L S + K +A
Sbjct: 165 MEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKENVKITSEA 224
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSF 378
+ LV+ S GD+R+AIT LQS RL GG+ I + V E+ GVIP I+ LL SF
Sbjct: 225 VSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIAGVIPRETIDGLLSACSSGSF 284
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+ LE ++LI E Y+ QL +Q HDIV+ + SDKQK++I+EKLAE + L DGA EY
Sbjct: 285 EKLETVAKNLINEGYAVAQLVNQLHDIVVESEDFSDKQKSIIVEKLAEVDKCLADGADEY 344
Query: 439 IQILDLGSIVIK 450
+Q++ L ++V++
Sbjct: 345 LQLISLCALVMQ 356
>UNIPROTKB|E2R2M6 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5984 OMA:ICFRGTF
GeneTree:ENSGT00550000074917 EMBL:AAEX03017297 RefSeq:XP_535837.1
Ensembl:ENSCAFT00000021708 GeneID:478667 KEGG:cfa:478667
NextBio:20853970 Uniprot:E2R2M6
Length = 363
Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 189/335 (56%), Positives = 236/335 (70%)
Query: 1 MEAFLRTGKLGKDAPXXXXXXXXXXXXX----RNKPVPWVEKYRPKTIDDVIEQQEVVSV 56
M+AFL+ + P + KPVPWVEKYRPK +D+V Q+EVV+V
Sbjct: 1 MQAFLKGTSVSTKPPLKDRGIAATAGSSGENKKTKPVPWVEKYRPKCVDEVAFQEEVVAV 60
Query: 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRD 115
LKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R+
Sbjct: 61 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 120
Query: 116 KVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175
KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICN
Sbjct: 121 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 180
Query: 176 YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRA 235
YVS II+PLTSRCSKFRFKPL++ RL I ++E V + + LV+ S GD+R+A
Sbjct: 181 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKVSNEGIAYLVKVSEGDLRKA 240
Query: 236 ITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAY 292
IT LQS RL GG+ I + + ++ GVIP I+ + SF LE ++DLI E +
Sbjct: 241 ITFLQSATRLTGGKEITEKVITDIAGVIPAGTIDGIFAACQSGSFDKLEAVVKDLIDEGH 300
Query: 293 SATQLFDQFHDIVMLASSLSDKQKALFKALETLVE 327
+ATQL QFHD+V+ +LSDKQK++ E L E
Sbjct: 301 AATQLVSQFHDVVVENDNLSDKQKSIIT--EKLAE 333
Score = 284 (105.0 bits), Expect = 1.0e-24, P = 1.0e-24
Identities = 72/192 (37%), Positives = 111/192 (57%)
Query: 268 IEKLLKVDSFQVLEKYIEDLI--LEAYSATQLFDQFHDIVMLASSL--SDKQ--KALFKA 321
+EK K F ++ Y+ +I L + + F D + L +DK+ K +
Sbjct: 166 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKVSNEG 225
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSF 378
+ LV+ S GD+R+AIT LQS RL GG+ I + + ++ GVIP I+ + SF
Sbjct: 226 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAGTIDGIFAACQSGSF 285
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
LE ++DLI E ++ATQL QFHD+V+ +LSDKQK++I EKLAE + L DGA E+
Sbjct: 286 DKLEAVVKDLIDEGHAATQLVSQFHDVVVENDNLSDKQKSIITEKLAEADKCLADGADEH 345
Query: 439 IQILDLGSIVIK 450
+Q++ L + V++
Sbjct: 346 LQLISLCATVMQ 357
>UNIPROTKB|P35249 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0048015 "phosphatidylinositol-mediated
signaling" evidence=NAS] [GO:0006260 "DNA replication"
evidence=NAS;TAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] Reactome:REACT_216
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677 EMBL:CH471052
GO:GO:0017111 GO:GO:0048015 GO:GO:0000084 KO:K10755 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 EMBL:M87339 EMBL:AF538718 EMBL:BT006987
EMBL:CR536561 EMBL:BC017452 EMBL:BC024022 IPI:IPI00017381
PIR:A45253 RefSeq:NP_002907.1 RefSeq:NP_853551.1 UniGene:Hs.732098
ProteinModelPortal:P35249 SMR:P35249 DIP:DIP-24267N IntAct:P35249
MINT:MINT-1485723 STRING:P35249 PhosphoSite:P35249 DMDM:1703052
PaxDb:P35249 PeptideAtlas:P35249 PRIDE:P35249 DNASU:5984
Ensembl:ENST00000296273 Ensembl:ENST00000392481 GeneID:5984
KEGG:hsa:5984 UCSC:uc003fqz.3 GeneCards:GC03M186507 HGNC:HGNC:9972
HPA:CAB004557 MIM:102577 neXtProt:NX_P35249 PharmGKB:PA34341
InParanoid:P35249 OMA:QQLSQNC PhylomeDB:P35249 ChiTaRS:RFC4
GenomeRNAi:5984 NextBio:23297 ArrayExpress:P35249 Bgee:P35249
CleanEx:HS_RFC4 Genevestigator:P35249 GermOnline:ENSG00000163918
Uniprot:P35249
Length = 363
Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
Identities = 188/336 (55%), Positives = 238/336 (70%)
Query: 1 MEAFLRTGKLGKDAPXX-----XXXXXXXXXXXRNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E+V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ I + + ++ GVIP I+ + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMLASSLSDKQKALFKALETLVE 327
++ATQL +Q HD+V+ ++LSDKQK++ E L E
Sbjct: 301 HAATQLVNQLHDVVV-ENNLSDKQKSIIT--EKLAE 333
Score = 268 (99.4 bits), Expect = 7.0e-23, P = 7.0e-23
Identities = 69/192 (35%), Positives = 109/192 (56%)
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLF------DQFHDIVMLASSLSDKQKALFKA 321
+EK K F ++ Y+ +I S F D+ +L + + K +
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEG 226
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSF 378
+ LV+ S GD+R+AIT LQS RL GG+ I + + ++ GVIP I+ + SF
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSF 286
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
LE ++DLI E ++ATQL +Q HD+V+ ++LSDKQK++I EKLAE + L DGA E+
Sbjct: 287 DKLEAVVKDLIDEGHAATQLVNQLHDVVVE-NNLSDKQKSIITEKLAEVDKCLADGADEH 345
Query: 439 IQILDLGSIVIK 450
+Q++ L + V++
Sbjct: 346 LQLISLCATVMQ 357
>RGD|1310142 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1310142
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755
eggNOG:COG0470 EMBL:CH473999 SUPFAM:SSF48019 HOVERGEN:HBG002053
Pfam:PF08542 CTD:5984 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 OrthoDB:EOG4Q58PN EMBL:BC168166
IPI:IPI00370513 RefSeq:NP_001099339.1 UniGene:Rn.17046
STRING:B4F778 Ensembl:ENSRNOT00000002487 GeneID:288003
KEGG:rno:288003 UCSC:RGD:1310142 OMA:INIPHED NextBio:627397
Genevestigator:B4F778 Uniprot:B4F778
Length = 364
Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
Identities = 186/302 (61%), Positives = 230/302 (76%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
KPVPWVEKYRPK +D+V Q+EVV+VLKK L GADLP+ LFYGPPGTGKTST++AA +L
Sbjct: 36 KPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAAREL 95
Query: 91 FG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
FG +++R R+LELNASD+RGIQV+R+KVK FAQ T SG DGKPCPPFKIVILDEADSM
Sbjct: 96 FGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSM 155
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AAQAALRRTMEKE+K+TRFCLICNYVS II+PLTSRCSKFRFKPL++ RL I
Sbjct: 156 TSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQKRLLDIA 215
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL-EVTGVIPKPWI 268
E+E+V + + LV S GD+R+AIT LQS RL GG+ I +EDV+ ++ GVIP I
Sbjct: 216 EKENVKIGDEEIAYLVRISEGDLRKAITFLQSATRLTGGKEI-SEDVITDIAGVIPAATI 274
Query: 269 EKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETL 325
E ++ SF LE +++LI E ++ATQL +Q HD ++ +LSDKQK++ E L
Sbjct: 275 EGIVTACHSGSFDKLEAVLKNLIDEGHAATQLVNQLHDSIIEDENLSDKQKSIIT--EKL 332
Query: 326 VE 327
E
Sbjct: 333 AE 334
Score = 263 (97.6 bits), Expect = 8.2e-23, Sum P(2) = 8.2e-23
Identities = 72/193 (37%), Positives = 110/193 (56%)
Query: 268 IEKLLKVDSFQVLEKYIEDLI--LEAYSATQLFDQFHDIVMLASSLSDKQKALFKA---- 321
+EK K F ++ Y+ +I L + + F D + L +K K
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQKRLLDIAEKENVKIGDEE 226
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL-EVTGVIPNPWIEKLLKV---DS 377
+ LV S GD+R+AIT LQS RL GG+ I +EDV+ ++ GVIP IE ++ S
Sbjct: 227 IAYLVRISEGDLRKAITFLQSATRLTGGKEI-SEDVITDIAGVIPAATIEGIVTACHSGS 285
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
F LE +++LI E ++ATQL +Q HD ++ +LSDKQK++I EKLAE + L DGA E
Sbjct: 286 FDKLEAVLKNLIDEGHAATQLVNQLHDSIIEDENLSDKQKSIITEKLAEVDKCLADGADE 345
Query: 438 YIQILDLGSIVIK 450
++Q++ L + V++
Sbjct: 346 HLQLMSLCATVMQ 358
Score = 39 (18.8 bits), Expect = 8.2e-23, Sum P(2) = 8.2e-23
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 258 EVTGVIPKPWIEK 270
E V P PW+EK
Sbjct: 31 ETKKVKPVPWVEK 43
>ZFIN|ZDB-GENE-040824-3 [details] [associations]
symbol:rfc4 "replication factor C (activator 1) 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0060041 "retina development in
camera-type eye" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-040824-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0060041 GO:GO:0017111 KO:K10755
eggNOG:COG0470 SUPFAM:SSF48019 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4Q58PN
EMBL:AY648805 IPI:IPI00506924 RefSeq:NP_999902.2 UniGene:Dr.77554
ProteinModelPortal:Q6DRF4 STRING:Q6DRF4 PRIDE:Q6DRF4 GeneID:406435
KEGG:dre:406435 NextBio:20818031 ArrayExpress:Q6DRF4 Bgee:Q6DRF4
Uniprot:Q6DRF4
Length = 358
Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
Identities = 176/322 (54%), Positives = 231/322 (71%)
Query: 1 MEAFLRTGKLGKDAPXXXXXXXXXXXXXRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+ + + VPWVEKYRPK +D+V Q+EVV+VLKK
Sbjct: 1 MQAFLKGSSSQSVKAQKPSSSSSSGGEKKQRAVPWVEKYRPKCVDEVAFQEEVVAVLKKS 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
L GADLP+ LFYGPPGTGKTST++AA +L+G D+YR+R+LELNASD+RGIQV+R+KVK
Sbjct: 61 LEGADLPNLLFYGPPGTGKTSTILAAARELYGPDLYRQRVLELNASDERGIQVVREKVKR 120
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ T +G DGK CPPFKI+ILDEADSMT AAQAALRRTMEKE+++TRFCLICNYVS
Sbjct: 121 FAQLTVAGTRPDGKTCPPFKIIILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVSR 180
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+PLTSRCSKFRFKPLA + R+ IC +E++ + ++ LV S GD+R+AIT L
Sbjct: 181 IIEPLTSRCSKFRFKPLANDVQQERILEICRKENLKYTTEGVDALVRVSEGDLRKAITFL 240
Query: 240 QSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
QS ARL I + ++E+ GV+P I+ LL + +F+ LE ++D+I + Y+AT
Sbjct: 241 QSGARLNSEREITEQTIIEIAGVVPPKVIQSLLHICYKGTFEKLEVAVKDMIDQGYAATN 300
Query: 297 LFDQFHDIVMLASSLSDKQKAL 318
L +Q HD++ + LSDKQK++
Sbjct: 301 LLNQLHDVI-IEEQLSDKQKSV 321
Score = 272 (100.8 bits), Expect = 2.5e-23, P = 2.5e-23
Identities = 56/134 (41%), Positives = 89/134 (66%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+ ++ LV S GD+R+AIT LQS ARL I + ++E+ GV+P I+ LL +
Sbjct: 220 EGVDALVRVSEGDLRKAITFLQSGARLNSEREITEQTIIEIAGVVPPKVIQSLLHICYKG 279
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+F+ LE ++D+I + Y+AT L +Q HD+++ LSDKQK++I EK+AE + L DGA
Sbjct: 280 TFEKLEVAVKDMIDQGYAATNLLNQLHDVIIE-EQLSDKQKSVITEKMAEVDKCLADGAD 338
Query: 437 EYIQILDLGSIVIK 450
EY+Q+L L S++++
Sbjct: 339 EYLQLLSLCSVIMQ 352
>UNIPROTKB|F1SFI3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:CU633961 Ensembl:ENSSSCT00000012916 Uniprot:F1SFI3
Length = 366
Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 185/338 (54%), Positives = 236/338 (69%)
Query: 1 MEAFLRTGKLGKDAPXX-----XXXXXXXXXXXRNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAATARSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQD--GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172
+KVK FAQ T SG + GKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCL
Sbjct: 121 EKVKNFAQLTVSGSRSEISGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCL 180
Query: 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDM 232
ICNYVS II+PLTSRCSKFRFKPL++ RL I ++E V + + LV+ S GD+
Sbjct: 181 ICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISDEGIAYLVKVSEGDL 240
Query: 233 RRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLIL 289
R+AIT LQS RL GG+ + + + ++ GV+P I+ +L SF LE ++DLI
Sbjct: 241 RKAITFLQSATRLTGGKEVTEKMITDIAGVVPTETIDGVLAACQSGSFDKLEAVVKDLID 300
Query: 290 EAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVE 327
E ++ATQ +Q HD+V+ +LSDKQK++ E L E
Sbjct: 301 EGHAATQFVNQLHDVVVENDNLSDKQKSVIT--EKLAE 336
Score = 277 (102.6 bits), Expect = 6.6e-24, P = 6.6e-24
Identities = 69/192 (35%), Positives = 111/192 (57%)
Query: 268 IEKLLKVDSFQVLEKYIEDLI--LEAYSATQLFDQFHDIVMLASSL--SDKQ--KALFKA 321
+EK K F ++ Y+ +I L + + F D + L +DK+ K +
Sbjct: 169 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISDEG 228
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSF 378
+ LV+ S GD+R+AIT LQS RL GG+ + + + ++ GV+P I+ +L SF
Sbjct: 229 IAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKMITDIAGVVPTETIDGVLAACQSGSF 288
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
LE ++DLI E ++ATQ +Q HD+V+ +LSDKQK++I EKLAE + L DGA E+
Sbjct: 289 DKLEAVVKDLIDEGHAATQFVNQLHDVVVENDNLSDKQKSVITEKLAEADKCLADGADEH 348
Query: 439 IQILDLGSIVIK 450
+Q++ L + V++
Sbjct: 349 LQLISLCATVMQ 360
>MGI|MGI:2146571 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:2146571
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 EMBL:AK146954
EMBL:BC003335 IPI:IPI00319874 RefSeq:NP_663455.1 UniGene:Mm.386835
ProteinModelPortal:Q99J62 SMR:Q99J62 IntAct:Q99J62 STRING:Q99J62
PhosphoSite:Q99J62 PaxDb:Q99J62 PRIDE:Q99J62
Ensembl:ENSMUST00000023598 GeneID:106344 KEGG:mmu:106344
UCSC:uc007yth.1 OrthoDB:EOG4Q58PN NextBio:358165 Bgee:Q99J62
CleanEx:MM_RFC4 Genevestigator:Q99J62 GermOnline:ENSMUSG00000022881
Uniprot:Q99J62
Length = 364
Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
Identities = 183/302 (60%), Positives = 228/302 (75%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
KPVPWVEKYRPK +D+V Q EVV+VL+K L GADLP+ LFYGPPGTGKTST++AA +L
Sbjct: 36 KPVPWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAAREL 95
Query: 91 FG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
FG +++R R+LELNASD+RGIQV+R+KVK FAQ T SG DGKPCPPFKIVILDEADSM
Sbjct: 96 FGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSM 155
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AAQAALRRTMEKE+K+TRFCLICNYVS II+PLTSRCSKFRFKPL++ RL I
Sbjct: 156 TSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIA 215
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL-EVTGVIPKPWI 268
E+E+V + + LV+ S GD+R+AIT LQS RL GG+ V+EDV+ ++ GVIP I
Sbjct: 216 EKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKE-VSEDVITDIAGVIPAATI 274
Query: 269 EKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETL 325
+ + SF LE +++LI E ++ATQL +Q HD ++ +LSDK K++ E L
Sbjct: 275 DGIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKSIIT--EKL 332
Query: 326 VE 327
E
Sbjct: 333 AE 334
Score = 257 (95.5 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 70/193 (36%), Positives = 109/193 (56%)
Query: 268 IEKLLKVDSFQVLEKYIEDLI--LEAYSATQLFDQFHDIVMLASSLSDKQKALFKA---- 321
+EK K F ++ Y+ +I L + + F D + L +K K
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEE 226
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL-EVTGVIPNPWIEKLLKV---DS 377
+ LV+ S GD+R+AIT LQS RL GG+ V+EDV+ ++ GVIP I+ + S
Sbjct: 227 IAYLVKISEGDLRKAITFLQSATRLTGGKE-VSEDVITDIAGVIPAATIDGIFTACHSGS 285
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
F LE +++LI E ++ATQL +Q HD ++ +LSDK K++I EKLAE + L DGA E
Sbjct: 286 FDKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKSIITEKLAEVDKCLADGADE 345
Query: 438 YIQILDLGSIVIK 450
++Q++ L + V++
Sbjct: 346 HLQLMSLCATVMQ 358
Score = 39 (18.8 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 258 EVTGVIPKPWIEK 270
E V P PW+EK
Sbjct: 31 ETKKVKPVPWVEK 43
>RGD|1593197 [details] [associations]
symbol:LOC367042 "similar to Activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit) (A1 37 kDa subunit) (RF-C 37
kDa subunit) (RFC37)" species:10116 "Rattus norvegicus" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1593197
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000074917
OrthoDB:EOG4Q58PN IPI:IPI00780490 Ensembl:ENSRNOT00000060753
Uniprot:D4ADU1
Length = 346
Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
Identities = 168/312 (53%), Positives = 214/312 (68%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
KPVPWVEKYRPK +D+V Q+EVV+VLKK L GADLP+ LFYGPPGTGKTST++AA +L
Sbjct: 36 KPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAAREL 95
Query: 91 FGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
FG ++R R+LELNASD+RGIQ KVK FAQ T SG DGKPCP FK VILDEADSM
Sbjct: 96 FGPALFRLRVLELNASDERGIQ----KVKNFAQLTVSGSRSDGKPCPSFKTVILDEADSM 151
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AA+A LR+TMEKE+K+TRFCL CNYVS II+PLTSR SKF F PL++ RL I
Sbjct: 152 TSAARA-LRQTMEKESKTTRFCLFCNYVSRIIEPLTSRRSKFCFTPLSDKIQQKRLLGIA 210
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIE 269
E+E+V K + LV S GD+R+AI LQS R GG+ + + ++ GV P IE
Sbjct: 211 EKENV----KLGDDLVTISEGDLRKAIPLLQSATRPTGGKETPEDVITDIAGVTPAATIE 266
Query: 270 KLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVE-- 327
++ SF LE +++LI E ++AT L ++ HD ++ +LSDK K++ VE
Sbjct: 267 GIVS-GSFDKLEAVVKNLIDEGHAATGLVNELHDSIIEKENLSDKWKSVITEKLAEVEKC 325
Query: 328 TSGGDMRRAITC 339
++GG +C
Sbjct: 326 SAGGADEPLCSC 337
Score = 206 (77.6 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 57/172 (33%), Positives = 87/172 (50%)
Query: 268 IEKLLKVDSFQVLEKYIEDLI--LEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETL 325
+EK K F + Y+ +I L + + F D + L +K K + L
Sbjct: 162 MEKESKTTRFCLFCNYVSRIIEPLTSRRSKFCFTPLSDKIQQKRLLGIAEKENVKLGDDL 221
Query: 326 VETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYI 385
V S GD+R+AI LQS R GG+ + + ++ GV P IE ++ SF LE +
Sbjct: 222 VTISEGDLRKAIPLLQSATRPTGGKETPEDVITDIAGVTPAATIEGIVS-GSFDKLEAVV 280
Query: 386 EDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
++LI E ++AT L ++ HD ++ +LSDK K++I EKLAE GA E
Sbjct: 281 KNLIDEGHAATGLVNELHDSIIEKENLSDKWKSVITEKLAEVEKCSAGGADE 332
Score = 38 (18.4 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 257 LEVTGVIPKPWIEK 270
+E V P PW+EK
Sbjct: 30 VESKKVKPVPWVEK 43
>ASPGD|ASPL0000039105 [details] [associations]
symbol:AN2969 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0033314 "mitotic DNA
replication checkpoint" evidence=IEA] [GO:0006272 "leading strand
elongation" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0031389
"Rad17 RFC-like complex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:BN001306 GO:GO:0017111 SUPFAM:SSF48019 Pfam:PF08542
OMA:QQLSQNC EnsemblFungi:CADANIAT00010111 Uniprot:C8VJ05
Length = 387
Score = 643 (231.4 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
Identities = 138/267 (51%), Positives = 180/267 (67%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPKT+DDV Q VL++ L ++LPH LFYGPPGTGKTST++A LFG
Sbjct: 35 PWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGP 94
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGK-----PCPPFKIVILDEA 146
+YR RILELNASD+RGI ++R+KVK FA+ Q + D + PCPPFKI+ILDEA
Sbjct: 95 ALYRSRILELNASDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKYPCPPFKIIILDEA 154
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
DSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II+PL SRCSKFRFKPL + RL
Sbjct: 155 DSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDRLA 214
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG-----EGIVNEDVLEV-T 260
I + E + + ++ L+ S GD+RRAIT LQS ARL G +G +E++ + +
Sbjct: 215 QIAQLEKLSLENGVVDKLISCSDGDLRRAITYLQSAARLVGAAKAAKDGDEDEEMKDQGS 274
Query: 261 GVIPKPWIEKLLKVDSFQVLEKYIEDL 287
+I IE++ V VL+ I+ L
Sbjct: 275 DMITVSTIEEIAGVVPESVLDGLIQSL 301
Score = 117 (46.2 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
Identities = 28/105 (26%), Positives = 59/105 (56%)
Query: 347 KGGEGIVNEDVLEVTGVIPNPWIEKLL------KVDS-FQVLEKYIEDLILEAYSATQLF 399
+G + I + E+ GV+P ++ L+ ++ S ++ + K + +++ + +SATQ+
Sbjct: 272 QGSDMITVSTIEEIAGVVPESVLDGLIQSLQPKRMGSPYEAVSKVVTEIVADGWSATQIL 331
Query: 400 DQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 444
Q + ++ ++ D QK I+ +E + RL DGA E++ ILD+
Sbjct: 332 LQLYRRMVYNDAIPDIQKNKIVLVFSEMDKRLVDGADEHLSILDV 376
>POMBASE|SPAC23D3.02 [details] [associations]
symbol:rfc2 "DNA replication factor C complex subunit
Rfc2" species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005663 "DNA replication
factor C complex" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006270 "DNA replication initiation" evidence=IMP] [GO:0031389
"Rad17 RFC-like complex" evidence=TAS] [GO:0031390 "Ctf18 RFC-like
complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like complex"
evidence=IDA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IMP] [GO:0043596 "nuclear replication fork" evidence=IC]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC23D3.02
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0000790 GO:GO:0006270 GO:GO:0043596
GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0033314 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 PIR:T38278 RefSeq:NP_594540.1
ProteinModelPortal:Q09843 SMR:Q09843 STRING:Q09843
EnsemblFungi:SPAC23D3.02.1 GeneID:2541908 KEGG:spo:SPAC23D3.02
HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4ZCXDF NextBio:20802995
Uniprot:Q09843
Length = 340
Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
Identities = 153/299 (51%), Positives = 193/299 (64%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K +PWVE YRPKT+D V Q+ V VLKK L +LPH LFYG PGTGKTST++A +L
Sbjct: 17 KSIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSREL 76
Query: 91 FG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
FG + + R+LELNASD+RGI +IR+KVK+FA+ T + DG PCPPFKI+ILDEADSM
Sbjct: 77 FGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTN-KVDGYPCPPFKIIILDEADSM 135
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQAALRRTME + TRFCLICNY++ II PL+SRCSK+RFKPL M+ RL++I
Sbjct: 136 TQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEFIA 195
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIE 269
++V + + LVE SGGDMR+AIT LQS A L G I V E+ G +P I
Sbjct: 196 ADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEELAGAVPYNIIR 255
Query: 270 KLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSD--KQKALFKALE 323
LL + +E D+ E YS + Q HD+++ +LS K K K E
Sbjct: 256 SLLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVLLKEETLSSPVKYKIFMKLSE 314
Score = 210 (79.0 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 52/130 (40%), Positives = 69/130 (53%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSF 378
+ LVE SGGDMR+AIT LQS A L G I V E+ G +P I LL +
Sbjct: 207 VNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEELAGAVPYNIIRSLLDTAYTKNV 266
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+E D+ E YS + Q HD+++ +LS K I KL+E + RL DGA E
Sbjct: 267 SNIETLSRDVAAEGYSTGIILSQLHDVLLKEETLSSPVKYKIFMKLSEVDKRLNDGADET 326
Query: 439 IQILDLGSIV 448
+Q+LDL S +
Sbjct: 327 LQLLDLLSSI 336
>SGD|S000003829 [details] [associations]
symbol:RFC2 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031391 "Elg1 RFC-like complex"
evidence=IPI] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0006272 "leading strand elongation" evidence=IDA] [GO:0017076
"purine nucleotide binding" evidence=ISS] [GO:0000075 "cell cycle
checkpoint" evidence=IMP] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0007062 "sister chromatid cohesion"
evidence=IPI] [GO:0003689 "DNA clamp loader activity" evidence=IDA]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000003829
GO:GO:0005524 GO:GO:0005634 EMBL:BK006943 GO:GO:0003677
GO:GO:0006298 EMBL:L47993 GO:GO:0017111 GO:GO:0017076 KO:K06883
RefSeq:NP_012602.3 GeneID:853531 KEGG:sce:YJR068W KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
RefSeq:NP_012606.3 GeneID:853535 KEGG:sce:YJR072C PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224154
OrthoDB:EOG4ZCXDF EMBL:D28499 EMBL:U26028 EMBL:Z49568 EMBL:AY557920
PIR:S45531 ProteinModelPortal:P40348 SMR:P40348 DIP:DIP-2528N
IntAct:P40348 MINT:MINT-480404 STRING:P40348 PaxDb:P40348
PeptideAtlas:P40348 EnsemblFungi:YJR068W CYGD:YJR068w
GeneTree:ENSGT00550000074917 OMA:SMTADAQ EvolutionaryTrace:P40348
NextBio:974230 Genevestigator:P40348 GermOnline:YJR068W
Uniprot:P40348
Length = 353
Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
Identities = 148/281 (52%), Positives = 195/281 (69%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +D+V Q V+VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ---DGKPCPPFKIVILDEADSM 149
D+ + RILELNASD+RGI ++R+KVK FA+ T S ++ + PCPP+KI+ILDEADSM
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L + + RL++I
Sbjct: 146 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFIS 205
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPK 265
EQE+V CD LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P
Sbjct: 206 EQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPH 265
Query: 266 P-WIEKLLKVDS--FQVLEKYIEDLILEAYSATQLFDQFHD 303
IE + KV S F ++KY+ + +SA + +Q H+
Sbjct: 266 DILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHE 306
Score = 167 (63.8 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 43/130 (33%), Positives = 73/130 (56%)
Query: 322 LETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPNP-WIEKLLKVD 376
LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P+ IE + KV
Sbjct: 217 LERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVK 276
Query: 377 S--FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
S F ++KY+ + +SA + +Q H+ ++ + K I L ++RL +G
Sbjct: 277 SGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNG 336
Query: 435 ASEYIQILDL 444
+E+IQ+L+L
Sbjct: 337 TNEHIQLLNL 346
>UNIPROTKB|C9J8M3 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 EMBL:AC112907 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 OrthoDB:EOG4Q58PN IPI:IPI00792595
ProteinModelPortal:C9J8M3 SMR:C9J8M3 STRING:C9J8M3
Ensembl:ENST00000418288 ArrayExpress:C9J8M3 Bgee:C9J8M3
Uniprot:C9J8M3
Length = 214
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 138/211 (65%), Positives = 162/211 (76%)
Query: 1 MEAFLRTGKLGKDAPXX-----XXXXXXXXXXXRNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
NYVS II+PLTSRCSKFRFKPL++ RL
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRL 211
>DICTYBASE|DDB_G0286027 [details] [associations]
symbol:rfc4 "replication factor C subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0286027 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000085 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 RefSeq:XP_637900.1 HSSP:O28219
ProteinModelPortal:Q54MD4 STRING:Q54MD4 EnsemblProtists:DDB0232233
GeneID:8625410 KEGG:ddi:DDB_G0286027 OMA:SANDIVQ
ProtClustDB:CLSZ2430137 Uniprot:Q54MD4
Length = 347
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 139/293 (47%), Positives = 198/293 (67%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWV KYRPKT+DDV Q++V+S LKK L+ +LPH LFYGPPGTGKTST++A ++G
Sbjct: 11 PWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDIYGP 70
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFA----QQTASGFNQDGKPCPPFKIVILDEADS 148
++ ++R+LELNASD+RGI+V+R K+K FA +T +G + G FK++ILDEADS
Sbjct: 71 ELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGAT---FKLIILDEADS 127
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQAALRRT+E +K+TRFCL+CNY+S II PL SRC+KFRFKPL + RL++I
Sbjct: 128 MTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKFI 187
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL-EVTGVIPKPW 267
+QE + C+ + + S GDMR+AIT LQS R + ++EDV+ + G +P
Sbjct: 188 SQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANK--ISEDVIYNIAGSLPPQL 245
Query: 268 IEKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
I++L+ K +SF L+ ++ +I + Y +Q+ Q D V+ L+ QK+
Sbjct: 246 IKQLVDCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKS 298
Score = 199 (75.1 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 57/193 (29%), Positives = 96/193 (49%)
Query: 268 IEKLLKVDSFQVLEKYIEDLI--LEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETL 325
IE K F +L YI +I L + A F + + Q+ K E++
Sbjct: 140 IETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKFISQQEGIKCEESV 199
Query: 326 VET----SGGDMRRAITCLQSCARLKGGEGIVNEDVL-EVTGVIPNPWIEKLL---KVDS 377
+ S GDMR+AIT LQS R + ++EDV+ + G +P I++L+ K +S
Sbjct: 200 YQAIQVVSNGDMRKAITYLQSAFRFFANK--ISEDVIYNIAGSLPPQLIKQLVDCCKKNS 257
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
F L+ ++ +I + Y +Q+ Q D V++ L+ QK+ I K+ + L DG+ E
Sbjct: 258 FDRLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKSHITMKIGNVDRNLIDGSEE 317
Query: 438 YIQILDLGSIVIK 450
++Q+ DL S ++K
Sbjct: 318 FLQLFDLSSYIMK 330
>CGD|CAL0002015 [details] [associations]
symbol:RFC2 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1
RFC-like complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006270
"DNA replication initiation" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0002015
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000024 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224154 RefSeq:XP_720328.1
RefSeq:XP_888712.1 ProteinModelPortal:Q5AFN3 SMR:Q5AFN3
STRING:Q5AFN3 GeneID:3637939 GeneID:3703993 KEGG:cal:CaO19.7035
KEGG:cal:CaO19_7035 Uniprot:Q5AFN3
Length = 363
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 130/277 (46%), Positives = 188/277 (67%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK+++DV Q+ + VL + + +LPH LFYGPPGTGKTST++A +L+G
Sbjct: 25 PWVEKYRPKSLNDVSSQEHTIKVLTQTIKSGNLPHMLFYGPPGTGKTSTILALAKELYGP 84
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD---GKPCPPFKIVILDEADSM 149
++Y+ R+LELNASD+RGI ++R+K+K FA+ T S ++ PCPP+KI+ILDEADSM
Sbjct: 85 NLYKSRVLELNASDERGISIVREKIKNFARLTISNPTKEDLQNYPCPPYKIIILDEADSM 144
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA-ENTMLTRLQYI 208
T+ AQ+ALRRTME TRF LICNY++ II P+TSRCSKFRFK L EN L RL+YI
Sbjct: 145 TNDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNENAQL-RLKYI 203
Query: 209 CEQESVMCD-----FKALETLVETSGGDMRRAITCLQSCARLKGG------EGIVN-EDV 256
+QE++ + + ++ L++ SGGD+R+AIT LQS A+L + ++ + +
Sbjct: 204 GQQENLRFESENNEHQVIQELLKISGGDLRKAITYLQSAAKLSETFDINHHQSLITIQSI 263
Query: 257 LEVTGVIPKPWIEKLLKVDSFQV----LEKYIEDLIL 289
E G++P + +L++ + L KYI+ I+
Sbjct: 264 RETAGILPDDILAELIQFIKSKTQQSRLIKYIDQSII 300
Score = 154 (59.3 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 40/137 (29%), Positives = 77/137 (56%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGG------EGIVN-EDVLEVTGVIPNPWIEKL 372
+ ++ L++ SGGD+R+AIT LQS A+L + ++ + + E G++P+ + +L
Sbjct: 219 QVIQELLKISGGDLRKAITYLQSAAKLSETFDINHHQSLITIQSIRETAGILPDDILAEL 278
Query: 373 LKVDSFQV----LEKYIED-LILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 427
++ + L KYI+ +IL +SA L DQ HD ++ S++ K I + +
Sbjct: 279 IQFIKSKTQQSRLIKYIDQSIILSGWSAQILLDQLHDKLILDESINSLSKNKISQIFFQS 338
Query: 428 NARLQDGASEYIQILDL 444
+ +L +G E+IQ+L++
Sbjct: 339 DRKLNNGTDEHIQLLNV 355
Score = 128 (50.1 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 36/117 (30%), Positives = 64/117 (54%)
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG------EGIVN-EDVLEVTGVIP 264
ES + + ++ L++ SGGD+R+AIT LQS A+L + ++ + + E G++P
Sbjct: 212 ESENNEHQVIQELLKISGGDLRKAITYLQSAAKLSETFDINHHQSLITIQSIRETAGILP 271
Query: 265 KPWIEKLLKVDSFQV----LEKYIED-LILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ +L++ + L KYI+ +IL +SA L DQ HD ++L S++ K
Sbjct: 272 DDILAELIQFIKSKTQQSRLIKYIDQSIILSGWSAQILLDQLHDKLILDESINSLSK 328
>GENEDB_PFALCIPARUM|PFB0840w [details] [associations]
symbol:PFB0840w "replication factor C, subunit
2" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 123/309 (39%), Positives = 191/309 (61%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD++ Q V +LK+ + ++PH +F+GPPGTGKTS + A H+LFG
Sbjct: 4 IPWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFG 63
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG--FNQDGKPC-PPFKIVILDEADS 148
+ ER+LELNASDDRGI V+R+K+K + + + S + + K P +K+V+LDEAD
Sbjct: 64 KENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEADM 123
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRR +E + TRF LICNY+ I P+ SRCS +RF+ + N +L YI
Sbjct: 124 MTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYI 183
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
C+ E++ ALE ++ET+ GD+RRA++ LQ C+ + I VL+V+G+ +
Sbjct: 184 CQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCIN--TKITLNSVLDVSGLPSDNIV 241
Query: 269 EKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETL 325
K++ K+ +++EK ++D+I + + +F F++ + + D K + L
Sbjct: 242 YKIIDACKMKDLKLVEKTVQDIIEDGFDVAYIFKSFNNYFVTNTEYEDSLK-----YQIL 296
Query: 326 VETSGGDMR 334
+E S D R
Sbjct: 297 LELSRHDYR 305
Score = 177 (67.4 bits), Expect = 7.1e-11, P = 7.1e-11
Identities = 41/131 (31%), Positives = 77/131 (58%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDS 377
ALE ++ET+ GD+RRA++ LQ C+ + I VL+V+G+ + + K++ K+
Sbjct: 195 ALEKIIETTEGDLRRAVSILQLCSCIN--TKITLNSVLDVSGLPSDNIVYKIIDACKMKD 252
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
+++EK ++D+I + + +F F++ ++ + D K IL +L+ + RL GA++
Sbjct: 253 LKLVEKTVQDIIEDGFDVAYIFKSFNNYFVTNTEYEDSLKYQILLELSRHDYRLHCGATQ 312
Query: 438 YIQILDLGSIV 448
YIQ+L S V
Sbjct: 313 YIQLLSFASSV 323
>UNIPROTKB|O96260 [details] [associations]
symbol:PFB0840w "Replication factor C, subunit 2"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 123/309 (39%), Positives = 191/309 (61%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD++ Q V +LK+ + ++PH +F+GPPGTGKTS + A H+LFG
Sbjct: 4 IPWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFG 63
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG--FNQDGKPC-PPFKIVILDEADS 148
+ ER+LELNASDDRGI V+R+K+K + + + S + + K P +K+V+LDEAD
Sbjct: 64 KENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEADM 123
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRR +E + TRF LICNY+ I P+ SRCS +RF+ + N +L YI
Sbjct: 124 MTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYI 183
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
C+ E++ ALE ++ET+ GD+RRA++ LQ C+ + I VL+V+G+ +
Sbjct: 184 CQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCIN--TKITLNSVLDVSGLPSDNIV 241
Query: 269 EKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETL 325
K++ K+ +++EK ++D+I + + +F F++ + + D K + L
Sbjct: 242 YKIIDACKMKDLKLVEKTVQDIIEDGFDVAYIFKSFNNYFVTNTEYEDSLK-----YQIL 296
Query: 326 VETSGGDMR 334
+E S D R
Sbjct: 297 LELSRHDYR 305
Score = 177 (67.4 bits), Expect = 7.1e-11, P = 7.1e-11
Identities = 41/131 (31%), Positives = 77/131 (58%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDS 377
ALE ++ET+ GD+RRA++ LQ C+ + I VL+V+G+ + + K++ K+
Sbjct: 195 ALEKIIETTEGDLRRAVSILQLCSCIN--TKITLNSVLDVSGLPSDNIVYKIIDACKMKD 252
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
+++EK ++D+I + + +F F++ ++ + D K IL +L+ + RL GA++
Sbjct: 253 LKLVEKTVQDIIEDGFDVAYIFKSFNNYFVTNTEYEDSLKYQILLELSRHDYRLHCGATQ 312
Query: 438 YIQILDLGSIV 448
YIQ+L S V
Sbjct: 313 YIQLLSFASSV 323
>DICTYBASE|DDB_G0282235 [details] [associations]
symbol:rfc5 "replication factor C subunit 5"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006272 "leading strand elongation" evidence=ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
dictyBase:DDB_G0282235 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0003677 GO:GO:0016887 GO:GO:0006298
KO:K10756 EMBL:AAFI02000046 eggNOG:COG0470 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 RefSeq:XP_640301.1 HSSP:P38629
ProteinModelPortal:Q54ST4 STRING:Q54ST4 EnsemblProtists:DDB0232229
GeneID:8623477 KEGG:ddi:DDB_G0282235 OMA:ILACARQ Uniprot:Q54ST4
Length = 347
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 116/234 (49%), Positives = 153/234 (65%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD+I +++ + K + LPH LFYGPPGTGKTST+ A +L+G
Sbjct: 24 LPWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLYG 83
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D Y +LELNASDDRGI V+R+++KTFA FN P+K++ILDEADSMT+
Sbjct: 84 DNYSRMVLELNASDDRGIDVVREQIKTFASSMFF-FNTT----VPYKLIILDEADSMTNI 138
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK TK+TRFC++CNYV II L SRC++FRF PL RL+ I E+E
Sbjct: 139 AQTALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEIIEKE 198
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP 266
+V D KA+ ++E GDMR+ + LQS + I E + + TG P P
Sbjct: 199 NVKVDSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGY-PMP 251
>ASPGD|ASPL0000017750 [details] [associations]
symbol:AN8064 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003689 "DNA clamp
loader activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0031389 "Rad17 RFC-like complex" evidence=IEA] [GO:0006272
"leading strand elongation" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0000077 "DNA damage
checkpoint" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:BN001302 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:AACD01000139 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8 OMA:ILACARQ
RefSeq:XP_681333.1 ProteinModelPortal:Q5AUG6 STRING:Q5AUG6
EnsemblFungi:CADANIAT00004090 GeneID:2869010 KEGG:ani:AN8064.2
Uniprot:Q5AUG6
Length = 398
Score = 522 (188.8 bits), Expect = 5.6e-56, Sum P(3) = 5.6e-56
Identities = 104/216 (48%), Positives = 144/216 (66%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV +++++ + + + LPH L YGPPGTGKTST++A +++G
Sbjct: 45 LPWVEKYRPNTLDDVSGHKDILATINRFVEANQLPHLLLYGPPGTGKTSTILALARRIYG 104
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ----DGKPC-PPFKIVILDEA 146
R+ +LELNASDDRGI V+R+++KTFA T F+ GK FK++ILDEA
Sbjct: 105 SKNMRQMVLELNASDDRGIDVVREQIKTFAS-TKQIFSMAPSATGKSSLASFKLIILDEA 163
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + +
Sbjct: 164 DAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRVLID 223
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E V +A+++LV S GDMRRA+ LQ+C
Sbjct: 224 QVIEKEDVRIQPEAVDSLVTLSRGDMRRALNVLQAC 259
Score = 45 (20.9 bits), Expect = 5.6e-56, Sum P(3) = 5.6e-56
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 421 LEKLAECNARLQDGASEYIQILDLGSIV 448
LE LAE RL G SE +Q L ++
Sbjct: 356 LEGLAEIEWRLSAGGSETVQTGGLVGVI 383
Score = 39 (18.8 bits), Expect = 5.6e-56, Sum P(3) = 5.6e-56
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 338 TCLQSCARLKGGEGIVNEDVLEVTG 362
+CL + LK +G+ D+L G
Sbjct: 315 SCLNTLNTLKINKGLALADILSALG 339
>POMBASE|SPAC27E2.10c [details] [associations]
symbol:rfc3 "DNA replication factor C complex subunit
Rfc3" species:4896 "Schizosaccharomyces pombe" [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IC;IDA] [GO:0005663 "DNA replication factor C
complex" evidence=TAS] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IC]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0065007 "biological regulation" evidence=NAS]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC27E2.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0000077 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006261 GO:GO:0000790
GO:GO:0043596 KO:K10756 GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 EMBL:AB017039 EMBL:AB017040 EMBL:AJ012839 PIR:T43410
RefSeq:XP_001713099.1 ProteinModelPortal:O14003 SMR:O14003
STRING:O14003 EnsemblFungi:SPAC27E2.10c.1 GeneID:2541493
KEGG:spo:SPAC27E2.10c HOGENOM:HOG000224152 OMA:VIAFHER
OrthoDB:EOG4K0TX8 NextBio:20802592 Uniprot:O14003
Length = 342
Score = 521 (188.5 bits), Expect = 9.9e-56, Sum P(2) = 9.9e-56
Identities = 98/210 (46%), Positives = 143/210 (68%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DV+ ++++S L+K +S +PH LFYGPPGTGKTST++A +++G
Sbjct: 23 LPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYG 82
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR +++ELNASDDRGI +R+++K FA T F FK++ILDEAD+MT A
Sbjct: 83 PNYRNQLMELNASDDRGIDAVREQIKNFAS-TRQIF------ASTFKMIILDEADAMTLA 135
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK TK+ RFC+ICNY++ I + SRC++FRF+PL + + ++ + E
Sbjct: 136 AQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSE 195
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSC 242
D A ++ S GDMR+A+ LQ+C
Sbjct: 196 HCNIDPDAKMAVLRLSKGDMRKALNILQAC 225
Score = 71 (30.1 bits), Expect = 9.9e-56, Sum P(2) = 9.9e-56
Identities = 41/138 (29%), Positives = 60/138 (43%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IEKLLKV---DSFQV 380
++ S GDMR+A+ LQ+C + I + G P+P I+ LK D F +
Sbjct: 207 VLRLSKGDMRKALNILQACHAAY--DHIDVSAIYNCVGH-PHPSDIDYFLKSIMNDEFVI 263
Query: 381 LEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKA--LILEKLAECNARLQDGASEY 438
I + + A Q D I + L K A IL++LA R+ G SE
Sbjct: 264 AFNTISSIKQQKGLALQ--DILTCIFEALDELEIKPNAKIFILDQLATIEHRMSFGCSEK 321
Query: 439 IQILDLGSIVIKANKTAV 456
IQ+ S +I + KT V
Sbjct: 322 IQL----SAMIASIKTGV 335
>ZFIN|ZDB-GENE-040907-1 [details] [associations]
symbol:rfc5 "replication factor C (activator 1) 5"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0060041 "retina development in camera-type eye" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-040907-1 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0060041 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
HOVERGEN:HBG002053 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:CU207223 EMBL:AY648755 IPI:IPI00505315
RefSeq:NP_001003862.1 UniGene:Dr.151058 SMR:Q6DRK4 STRING:Q6DRK4
Ensembl:ENSDART00000051670 GeneID:445385 KEGG:dre:445385
InParanoid:Q6DRK4 NextBio:20832089 Uniprot:Q6DRK4
Length = 334
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 116/230 (50%), Positives = 160/230 (69%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+T+DD+I Q+++S ++K +S LPH LFYGPPGTGKTST++A QL+
Sbjct: 14 LPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLYK 73
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
D + +LELNASDDRGI V+R + +FA T + F + FK+VILDEAD+MT
Sbjct: 74 DKEFNSMVLELNASDDRGIDVVRGPILSFAS-TRTIFKKG------FKLVILDEADAMTQ 126
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL++N M+ RL+++ +Q
Sbjct: 127 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQ 186
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
ES+ ++ +V S GDMRR++ LQS + G+ + E V TG
Sbjct: 187 ESIDITPDGMKAIVTLSTGDMRRSLNILQS-THMAYGK-VTEETVYTCTG 234
>WB|WBGene00004340 [details] [associations]
symbol:rfc-4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0045750 "positive regulation of S
phase of mitotic cell cycle" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006260
GO:GO:0000003 GO:GO:0000910 GO:GO:0017111 GO:GO:0045750 KO:K10755
eggNOG:COG0470 EMBL:FO080392 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 PIR:T16219 RefSeq:NP_498521.1
ProteinModelPortal:P53016 SMR:P53016 DIP:DIP-24293N IntAct:P53016
MINT:MINT-226482 STRING:P53016 PaxDb:P53016 EnsemblMetazoa:F31E3.3
GeneID:175976 KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976
WormBase:F31E3.3 InParanoid:P53016 OMA:CDLENNL NextBio:890574
Uniprot:P53016
Length = 334
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 113/223 (50%), Positives = 154/223 (69%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
R K + W EKYRPKT+DD+ Q EVV++LK L G DLPH LFYGPPGTGKTS +A C
Sbjct: 11 RPKVLTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCR 70
Query: 89 QLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
QLF +++ +R+L+LNASD+RGI V+R K+++F++ + +++ KI+ILDE D
Sbjct: 71 QLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHRED--VLKLKIIILDEVD 128
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQAA+RR +E +K+TRF LICNYVS +I P+ SRC+KFRFK L + RL+
Sbjct: 129 AMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRT 188
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR-LKGGE 249
IC+ E L+ ++E S GD+RRA+ LQS A LK G+
Sbjct: 189 ICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLAPILKSGD 231
>UNIPROTKB|P53016 [details] [associations]
symbol:rfc-4 "Replication factor C subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0006260 GO:GO:0000003 GO:GO:0000910
GO:GO:0017111 GO:GO:0045750 KO:K10755 eggNOG:COG0470 EMBL:FO080392
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 PIR:T16219
RefSeq:NP_498521.1 ProteinModelPortal:P53016 SMR:P53016
DIP:DIP-24293N IntAct:P53016 MINT:MINT-226482 STRING:P53016
PaxDb:P53016 EnsemblMetazoa:F31E3.3 GeneID:175976
KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976 WormBase:F31E3.3
InParanoid:P53016 OMA:CDLENNL NextBio:890574 Uniprot:P53016
Length = 334
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 113/223 (50%), Positives = 154/223 (69%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
R K + W EKYRPKT+DD+ Q EVV++LK L G DLPH LFYGPPGTGKTS +A C
Sbjct: 11 RPKVLTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCR 70
Query: 89 QLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
QLF +++ +R+L+LNASD+RGI V+R K+++F++ + +++ KI+ILDE D
Sbjct: 71 QLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHRED--VLKLKIIILDEVD 128
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQAA+RR +E +K+TRF LICNYVS +I P+ SRC+KFRFK L + RL+
Sbjct: 129 AMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRT 188
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR-LKGGE 249
IC+ E L+ ++E S GD+RRA+ LQS A LK G+
Sbjct: 189 ICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLAPILKSGD 231
>CGD|CAL0003213 [details] [associations]
symbol:RCF3 species:5476 "Candida albicans" [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1 RFC-like
complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0000077
"DNA damage checkpoint" evidence=IEA] [GO:0003689 "DNA clamp loader
activity" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 CGD:CAL0003213 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224152 EMBL:AACQ01000224
RefSeq:XP_710951.1 ProteinModelPortal:Q59ML2 SMR:Q59ML2
STRING:Q59ML2 GeneID:3647440 KEGG:cal:CaO19.3211 Uniprot:Q59ML2
Length = 361
Score = 489 (177.2 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 101/218 (46%), Positives = 144/218 (66%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM- 94
VEKYRP ++++V QQE+V ++K + LPH LFYGP GTGKTST+IA +++G
Sbjct: 26 VEKYRPDSLEEVKGQQEIVDTVRKFVETGKLPHLLFYGPSGTGKTSTIIALAKEIYGATN 85
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP---FKIVILDEADSMTH 151
Y+ ILELNASDDRGI V+R+++K FA T F ++ FK++ILDEAD+MT+
Sbjct: 86 YKNMILELNASDDRGIDVVRNQIKNFAS-TRQIFTKNTSQTASNNQFKLIILDEADAMTN 144
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ +LRR +EK TK+ RFC++ NY + L SRC++FRF P+ + + RL + +
Sbjct: 145 VAQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKDRLNTVIIK 204
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
E+V +A++ L++ S GDMRRA+ LQSC G E
Sbjct: 205 ENVNISPEAIDALLKLSNGDMRRALNVLQSCKAALGDE 242
Score = 82 (33.9 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 34/136 (25%), Positives = 62/136 (45%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGE-----GIVNEDV-----LEVTGVIPNPW- 368
+A++ L++ S GDMRRA+ LQSC G E G N+++ + G P+P
Sbjct: 212 EAIDALLKLSNGDMRRALNVLQSCKAALGDEEKEEDGHANDEIDVDMIYDCVGA-PHPQD 270
Query: 369 ----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKL 424
++ +LK D + ++ + L F +I ++ L K + IL+ L
Sbjct: 271 VETCLDSILKDDWTTAYLTLNKYKTIKGLALIDLITGFIEI-LNNYKLKPKTRLEILKGL 329
Query: 425 AECNARLQDGASEYIQ 440
++ + G ++ IQ
Sbjct: 330 SDIEYGISKGGNDKIQ 345
>UNIPROTKB|Q32PI3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
HOGENOM:HOG000224152 GeneTree:ENSGT00550000075072 OMA:ILACARQ
CTD:5985 OrthoDB:EOG4RBQJX EMBL:DAAA02045332 EMBL:BC108105
IPI:IPI00688331 RefSeq:NP_001068826.1 UniGene:Bt.21988 SMR:Q32PI3
STRING:Q32PI3 Ensembl:ENSBTAT00000009392 GeneID:508389
KEGG:bta:508389 NextBio:20868499 Uniprot:Q32PI3
Length = 316
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 128/294 (43%), Positives = 177/294 (60%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+T+DD+I Q+++S ++K +S LPH L YGPPGTGKTST++A QL+
Sbjct: 19 LPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK 78
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEAD+MT
Sbjct: 79 DKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEADAMTQ 131
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+++ E+
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 191
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
E V ++ L+ S GDMRRA+ LQS + G+ + E V TG K I +
Sbjct: 192 EKVDISEDGMKALITLSSGDMRRALNILQS-TNMAFGK-VTEETVYTCTGHPLKSDIANI 249
Query: 272 LKV---DSFQVLEKYIEDL-ILEAYSATQLFDQFHDIVMLASSLSDK-QKALFK 320
L F + I +L L+ + + + H V +S S QK K
Sbjct: 250 LDWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRGNSCSSPVQKLCIK 303
>UNIPROTKB|F1RKG3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000075072 OMA:ILACARQ
EMBL:CU468330 Ensembl:ENSSSCT00000010801 Uniprot:F1RKG3
Length = 354
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 114/230 (49%), Positives = 155/230 (67%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+T+DD+I Q+++S ++K +S LPH L YGPPGTGKTST++A QL+
Sbjct: 34 LPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK 93
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEAD+MT
Sbjct: 94 DKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEADAMTQ 146
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+++ E+
Sbjct: 147 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 206
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
E V ++ L+ S GDMRRA+ LQS + G+ + E V TG
Sbjct: 207 EKVDISEDGMKALITLSSGDMRRALNILQS-TNMAFGK-VTEETVYTCTG 254
>FB|FBgn0032244 [details] [associations]
symbol:RfC3 "Replication factor C subunit 3" species:7227
"Drosophila melanogaster" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 EMBL:AE014134
GO:GO:0022008 GO:GO:0003677 GO:GO:0006260 GO:GO:0046331 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075072 OMA:ILACARQ HSSP:Q8U4J3 EMBL:AF247499
EMBL:AY119188 RefSeq:NP_609399.1 UniGene:Dm.3298 SMR:Q9VKW3
IntAct:Q9VKW3 MINT:MINT-284572 STRING:Q9VKW3
EnsemblMetazoa:FBtr0080019 GeneID:34423 KEGG:dme:Dmel_CG5313
UCSC:CG5313-RA FlyBase:FBgn0032244 InParanoid:Q9VKW3
OrthoDB:EOG451C6M GenomeRNAi:34423 NextBio:788424 Uniprot:Q9VKW3
Length = 332
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 129/301 (42%), Positives = 178/301 (59%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD+I +E++S + + +S LPH LFYGPPGTGKTST++A QL+
Sbjct: 11 MPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYS 70
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASDDRGI ++R ++ FA T + F C FK++ILDEAD+MT+
Sbjct: 71 PQQFKSMVLELNASDDRGIGIVRGQILNFAS-TRTIF------CDTFKLIILDEADAMTN 123
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T + RFC+ICNY+S II L SRC++FRF PL+++ M+ RL+ I E
Sbjct: 124 DAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEA 183
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPKPWIEK 270
E+V L+ + GDMR+ + LQS VNED V G + IE+
Sbjct: 184 EAVQITEDGKRALLTLAKGDMRKVLNVLQSTVM---AFDTVNEDNVYMCVGYPLRQDIEQ 240
Query: 271 LLKV--------DSFQVLE--KYIEDLILEAYSATQLFDQFHDIVM-LASSLSDKQKALF 319
+LK DSF+ +E KY L LE + + H VM L +S K +
Sbjct: 241 ILKALLSGSSLEDSFKTVESAKYARGLALE-----DIITELHLFVMRLELPMSVMNKLIV 295
Query: 320 K 320
K
Sbjct: 296 K 296
>SGD|S000005234 [details] [associations]
symbol:RFC3 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IPI] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA] [GO:0006272 "leading
strand elongation" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007062 "sister chromatid cohesion" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000005234
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:BK006947
GO:GO:0016887 GO:GO:0006298 KO:K10756 eggNOG:COG0470 EMBL:U23084
GO:GO:0031390 GO:GO:0007062 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 GO:GO:0031391 EMBL:Z71566 PDB:1SXJ PDBsum:1SXJ
GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8
EMBL:L18755 EMBL:U26029 PIR:A36988 RefSeq:NP_014109.1
ProteinModelPortal:P38629 SMR:P38629 DIP:DIP-2529N IntAct:P38629
MINT:MINT-540713 STRING:P38629 PaxDb:P38629 PeptideAtlas:P38629
EnsemblFungi:YNL290W GeneID:855426 KEGG:sce:YNL290W CYGD:YNL290w
GeneTree:ENSGT00550000075072 OMA:YAHKLTP EvolutionaryTrace:P38629
NextBio:979295 Genevestigator:P38629 GermOnline:YNL290W
Uniprot:P38629
Length = 340
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 113/242 (46%), Positives = 161/242 (66%)
Query: 29 RNKP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
R+K +PWVEKYRP+T+D+V Q EV++ ++K + LPH LFYGPPGTGKTST++A
Sbjct: 8 RSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALA 67
Query: 88 HQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
+++G Y +LELNASDDRGI V+R+++K FA T F++ FK++ILDEAD
Sbjct: 68 REIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAS-TRQIFSKG------FKLIILDEAD 120
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT+AAQ ALRR +E+ TK+TRFC++ NY + L SRC++FRF+PL + + R+
Sbjct: 121 AMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIAN 180
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKG-GEGIVNEDVL-EVTGVIP 264
+ E + A + L+E S GDMRR + LQSC A L E +++DV+ E G P
Sbjct: 181 VLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGA-P 239
Query: 265 KP 266
+P
Sbjct: 240 RP 241
>UNIPROTKB|P40937 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0019899 "enzyme binding" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006281 "DNA repair"
evidence=NAS;TAS] [GO:0005663 "DNA replication factor C complex"
evidence=IDA] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
Reactome:REACT_216 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677
GO:GO:0019899 KO:K10756 GO:GO:0017111 GO:GO:0000084 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
OMA:ILACARQ EMBL:L07540 EMBL:AY254323 EMBL:AK094575 EMBL:AC131159
EMBL:BC001866 EMBL:BC013961 IPI:IPI00031514 IPI:IPI00925306
RefSeq:NP_001123584.1 RefSeq:NP_031396.1 RefSeq:NP_853556.2
UniGene:Hs.731908 PDB:1LFS PDBsum:1LFS ProteinModelPortal:P40937
SMR:P40937 DIP:DIP-36433N IntAct:P40937 MINT:MINT-1372754
STRING:P40937 PhosphoSite:P40937 DMDM:728777 PaxDb:P40937
PRIDE:P40937 DNASU:5985 Ensembl:ENST00000392542
Ensembl:ENST00000454402 GeneID:5985 KEGG:hsa:5985 UCSC:uc001twq.3
CTD:5985 GeneCards:GC12P118454 HGNC:HGNC:9973 HPA:HPA041037
MIM:600407 neXtProt:NX_P40937 PharmGKB:PA34342 InParanoid:P40937
PhylomeDB:P40937 GenomeRNAi:5985 NextBio:23303 ArrayExpress:P40937
Bgee:P40937 CleanEx:HS_RFC5 Genevestigator:P40937
GermOnline:ENSG00000111445 Uniprot:P40937
Length = 340
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 114/230 (49%), Positives = 155/230 (67%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+T++D+I Q+++S ++K ++ LPH L YGPPGTGKTST++A QL+
Sbjct: 20 LPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYK 79
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
D + +LELNASDDRGI +IR + +FA T + F + FK+VILDEAD+MT
Sbjct: 80 DKEFGSMVLELNASDDRGIDIIRGPILSFAS-TRTIFKKG------FKLVILDEADAMTQ 132
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+++ E+
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
E V ++ LV S GDMRRA+ LQS + G+ + E V TG
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQS-TNMAFGK-VTEETVYTCTG 240
>MGI|MGI:1919401 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1919401
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 GO:GO:0005663
HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
GeneTree:ENSGT00550000075072 OMA:ILACARQ CTD:5985 EMBL:AK011489
IPI:IPI00132481 RefSeq:NP_082404.1 UniGene:Mm.27997
ProteinModelPortal:Q9D0F6 SMR:Q9D0F6 STRING:Q9D0F6
PhosphoSite:Q9D0F6 PaxDb:Q9D0F6 PRIDE:Q9D0F6
Ensembl:ENSMUST00000086461 GeneID:72151 KEGG:mmu:72151
InParanoid:Q9D0F6 OrthoDB:EOG4RBQJX NextBio:335574 Bgee:Q9D0F6
CleanEx:MM_RFC5 Genevestigator:Q9D0F6 GermOnline:ENSMUSG00000029363
Uniprot:Q9D0F6
Length = 339
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 114/234 (48%), Positives = 157/234 (67%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
R + +PWVEKYRP+T+ D+I Q+++S ++K +S LPH L YGPPGTGKTST++A
Sbjct: 15 RARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAK 74
Query: 89 QLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEAD
Sbjct: 75 QLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEAD 127
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL++
Sbjct: 128 AMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 187
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
+ ++E+V ++ LV S GDMRRA+ LQS + G+ + E V TG
Sbjct: 188 VVQEENVDISEDGMKALVTLSSGDMRRALNILQS-TNMAFGK-VTEETVYTCTG 239
>RGD|1309280 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1309280
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
GeneTree:ENSGT00550000075072 OMA:ILACARQ IPI:IPI00870052
Ensembl:ENSRNOT00000001498 UCSC:RGD:1309280 ArrayExpress:F1LQL0
Uniprot:F1LQL0
Length = 339
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 114/234 (48%), Positives = 157/234 (67%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
R + +PWVEKYRP+T+ D+I Q+++S ++K +S LPH L YGPPGTGKTST++A
Sbjct: 15 RARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAK 74
Query: 89 QLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEAD
Sbjct: 75 QLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKRG------FKLVILDEAD 127
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL++
Sbjct: 128 AMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 187
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
+ ++E+V ++ LV S GDMRRA+ LQS + G+ + E V TG
Sbjct: 188 VVQEENVDISEDGMKALVTLSSGDMRRALNILQS-TNMAFGK-VTEETVYTCTG 239
>UNIPROTKB|E2RCF4 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:AAEX03014719 RefSeq:XP_534696.3
ProteinModelPortal:E2RCF4 Ensembl:ENSCAFT00000015721 GeneID:477499
KEGG:cfa:477499 NextBio:20852966 Uniprot:E2RCF4
Length = 339
Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
Identities = 113/230 (49%), Positives = 154/230 (66%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++A QL+
Sbjct: 19 LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK 78
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEAD+MT
Sbjct: 79 DKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEADAMTQ 131
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+++ +
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGE 191
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
E V ++ LV S GDMRRA+ LQS + G+ + E V TG
Sbjct: 192 EKVDLSEDGMKALVTLSSGDMRRALNILQS-TNMAFGK-VTEETVYTCTG 239
>UNIPROTKB|J9NUF8 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
EMBL:AAEX03014719 Ensembl:ENSCAFT00000046634 Uniprot:J9NUF8
Length = 316
Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
Identities = 113/230 (49%), Positives = 154/230 (66%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++A QL+
Sbjct: 19 LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYK 78
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEAD+MT
Sbjct: 79 DKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEADAMTQ 131
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+++ +
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGE 191
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
E V ++ LV S GDMRRA+ LQS + G+ + E V TG
Sbjct: 192 EKVDLSEDGMKALVTLSSGDMRRALNILQS-TNMAFGK-VTEETVYTCTG 239
>GENEDB_PFALCIPARUM|PF14_0601 [details] [associations]
symbol:PF14_0601 "replication factor C3"
species:5833 "Plasmodium falciparum" [GO:0005663 "DNA replication
factor C complex" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 112/259 (43%), Positives = 163/259 (62%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP ++D+I ++V+S +K+ + +LPH L +GPPGTGKTST++A C +L+GD
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGD 73
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+LELNASDDRGI VIRD++KTFA+ + + + K K++ILDEAD MT+ A
Sbjct: 74 KRSSFVLELNASDDRGINVIRDQIKTFAE-SKNHYTTCEKTT--LKLIILDEADHMTYPA 130
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q A+RR ME K+ RFCL+CNYV+ I + SRC+ FRF PL + M + I + E+
Sbjct: 131 QNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSEN 190
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK 273
V +++L+ GDMRR + CLQ + L +++E+V+ T IP P K
Sbjct: 191 VNLTEGGIDSLIRVGHGDMRRILNCLQVVS-LSHKNLVIDENVILSTLDIPLPSETK--- 246
Query: 274 VDSFQVLEKYIEDLILEAY 292
++LE + + I E+Y
Sbjct: 247 ----KILEYFTKGSIKESY 261
>UNIPROTKB|Q8IKK4 [details] [associations]
symbol:PF14_0601 "Replication factor C3" species:36329
"Plasmodium falciparum 3D7" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 112/259 (43%), Positives = 163/259 (62%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP ++D+I ++V+S +K+ + +LPH L +GPPGTGKTST++A C +L+GD
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGD 73
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+LELNASDDRGI VIRD++KTFA+ + + + K K++ILDEAD MT+ A
Sbjct: 74 KRSSFVLELNASDDRGINVIRDQIKTFAE-SKNHYTTCEKTT--LKLIILDEADHMTYPA 130
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q A+RR ME K+ RFCL+CNYV+ I + SRC+ FRF PL + M + I + E+
Sbjct: 131 QNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSEN 190
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK 273
V +++L+ GDMRR + CLQ + L +++E+V+ T IP P K
Sbjct: 191 VNLTEGGIDSLIRVGHGDMRRILNCLQVVS-LSHKNLVIDENVILSTLDIPLPSETK--- 246
Query: 274 VDSFQVLEKYIEDLILEAY 292
++LE + + I E+Y
Sbjct: 247 ----KILEYFTKGSIKESY 261
>UNIPROTKB|C9JTT7 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 EMBL:AC112907 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925397
ProteinModelPortal:C9JTT7 SMR:C9JTT7 STRING:C9JTT7
Ensembl:ENST00000447345 ArrayExpress:C9JTT7 Bgee:C9JTT7
Uniprot:C9JTT7
Length = 167
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 105/167 (62%), Positives = 124/167 (74%)
Query: 1 MEAFLRTGKLGKDAPXX-----XXXXXXXXXXXRNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTM 161
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTM
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTM 167
>WB|WBGene00018409 [details] [associations]
symbol:F44B9.8 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:FO080400 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:VIAFHER
GeneTree:ENSGT00550000075072 PIR:S44809 RefSeq:NP_498750.2
ProteinModelPortal:P34429 SMR:P34429 DIP:DIP-27001N IntAct:P34429
MINT:MINT-1095598 STRING:P34429 PaxDb:P34429 EnsemblMetazoa:F44B9.8
GeneID:176131 KEGG:cel:CELE_F44B9.8 UCSC:F44B9.8 CTD:176131
WormBase:F44B9.8 InParanoid:P34429 NextBio:891256 Uniprot:P34429
Length = 368
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 115/300 (38%), Positives = 165/300 (55%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +D+++ +++V L K + LPH LFYGPPGTGKT+T++AA Q++
Sbjct: 29 LPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYS 88
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQTA-SGFNQDGKP-CPPFKIVILDEADSM 149
+LELNASD+RGI V+R+ + FAQ F+ PFK+VILDEAD+M
Sbjct: 89 PTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEADAM 148
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ ALRR +EK T + RFC+ICNY++ I+ + SRC++FRF PL + ++ RL+YI
Sbjct: 149 TKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIV 208
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG--GEGIVNEDVLEVTGVIPKPW 267
E E + + L+ S GDMR I LQS A E V + + + T K
Sbjct: 209 ETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCIGQPTPKEMKEV 268
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVE 327
++ LL S + + L Y+ + HD V + A+ L + E
Sbjct: 269 VKTLLNDPSKKCMNTIQTKLFENGYALQDVITHLHDFVFTLDIPDEAMSAIITGLGEVEE 328
>TAIR|locus:2204710 [details] [associations]
symbol:RFC3 "replication factor C subunit 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0031348 "negative regulation of defense
response" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0031048 "chromatin silencing by small RNA" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0051567
"histone H3-K9 methylation" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005524 GO:GO:0031348 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 EMBL:AC010704 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:ILACARQ HSSP:Q8U4J3
EMBL:AY065452 EMBL:AY117282 IPI:IPI00521569 PIR:A96804
RefSeq:NP_177871.1 UniGene:At.28476 UniGene:At.70634
ProteinModelPortal:Q9CAQ8 SMR:Q9CAQ8 STRING:Q9CAQ8 PaxDb:Q9CAQ8
PRIDE:Q9CAQ8 EnsemblPlants:AT1G77470.1 GeneID:844083
KEGG:ath:AT1G77470 TAIR:At1g77470 InParanoid:Q9CAQ8
PhylomeDB:Q9CAQ8 ProtClustDB:CLSN2682996 ArrayExpress:Q9CAQ8
Genevestigator:Q9CAQ8 Uniprot:Q9CAQ8
Length = 369
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 118/250 (47%), Positives = 159/250 (63%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
++K PWVEKYRP+++DDV ++++ + + + LPH L YGPPGTGKTST++A
Sbjct: 35 QSKATPWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVAR 94
Query: 89 QLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148
+L+G YR ILELNASDDRGI V+R +++ FA T S F+ GK K+V+LDEAD+
Sbjct: 95 KLYGPKYRNMILELNASDDRGIDVVRQQIQDFAS-TQS-FSL-GKSS--VKLVLLDEADA 149
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR +EK TKSTRF LI N+V+ II L SRC++FRF PL M RL+++
Sbjct: 150 MTKDAQFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHV 209
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL------KGGEGIVNEDVLEVTG- 261
E E ++ L LV S GDMR+A+ LQS + + I EDV TG
Sbjct: 210 IEAERLVVSDCGLAALVRLSNGDMRKALNILQSTHMASKEITEEESKQITEEDVYLCTGN 269
Query: 262 VIPKPWIEKL 271
+PK IE++
Sbjct: 270 PLPKD-IEQI 278
>WB|WBGene00004338 [details] [associations]
symbol:rfc-2 species:6239 "Caenorhabditis elegans"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260
GO:GO:0040011 GO:GO:0000003 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
OMA:IQCLARI Pfam:PF08542 EMBL:FO080408 PIR:D88638
RefSeq:NP_500069.1 HSSP:Q8U4J3 ProteinModelPortal:O44175 SMR:O44175
DIP:DIP-26649N IntAct:O44175 MINT:MINT-1044481 STRING:O44175
PaxDb:O44175 EnsemblMetazoa:F58F6.4 GeneID:176946
KEGG:cel:CELE_F58F6.4 UCSC:F58F6.4 CTD:176946 WormBase:F58F6.4
InParanoid:O44175 NextBio:894694 Uniprot:O44175
Length = 334
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 116/292 (39%), Positives = 173/292 (59%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPK + D++ + +V LK ++P+ + GPPG GKT+++ A +L GD
Sbjct: 11 PWVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALARELLGD 70
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+E +LELNASD+RGI V+R ++KTFAQ + +G+ KI+ILDEADSMT A
Sbjct: 71 KVKEAVLELNASDERGIDVVRHRIKTFAQTKVT--LPEGR----HKIIILDEADSMTDGA 124
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTME TK+TRF L CN II+P+ SRC+ R+ L+ +LTR++ + + E
Sbjct: 125 QQALRRTMEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTRVKEVAKAEK 184
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK 273
V D LE ++ T+ GDMR+A+ LQ A + E + E+VL+V P P + ++K
Sbjct: 185 VNYDDGGLEAILFTAQGDMRQALNNLQ--ATVNAYELVNKENVLKVCDE-PHP--DLMIK 239
Query: 274 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETL 325
+ + K+ E A+++ +FH L S D LF+ ++T+
Sbjct: 240 MLHYCTDRKFFE--------ASKIIHEFH---RLGFSSDDIVSTLFRVVKTV 280
>SGD|S000005454 [details] [associations]
symbol:RFC4 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0007062 "sister chromatid
cohesion" evidence=IPI] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;IDA] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI] [GO:0007049
"cell cycle" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0031389 "Rad17
RFC-like complex" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 SGD:S000005454 GO:GO:0005524 GO:GO:0005634
EMBL:BK006948 GO:GO:0003677 GO:GO:0006298 EMBL:X83121 GO:GO:0017111
KO:K10755 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 EMBL:U26030 PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 Pfam:PF08542 OrthoDB:EOG4PP1RM EMBL:L20502
EMBL:Z74836 PIR:A53845 RefSeq:NP_014547.1 ProteinModelPortal:P40339
SMR:P40339 DIP:DIP-2530N IntAct:P40339 MINT:MINT-540691
STRING:P40339 PaxDb:P40339 PeptideAtlas:P40339 EnsemblFungi:YOL094C
GeneID:854059 KEGG:sce:YOL094C CYGD:YOL094c OMA:TMELYSN
EvolutionaryTrace:P40339 NextBio:975656 Genevestigator:P40339
GermOnline:YOL094C Uniprot:P40339
Length = 323
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 114/271 (42%), Positives = 159/271 (58%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+ + D++ +E + L++ ++PH + G PG GKT+++ H+L G
Sbjct: 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y + +LELNASDDRGI V+R+++K FAQ+ P KIVILDEADSMT
Sbjct: 69 RSYADGVLELNASDDRGIDVVRNQIKHFAQKKLH------LPPGKHKIVILDEADSMTAG 122
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME + STRF CN + II+PL SRC+ R+ L++ +L RL I + E
Sbjct: 123 AQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLE 182
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPKPWI-EK 270
V LE ++ T+ GDMR+AI LQS G G+VN D V ++ P P I +K
Sbjct: 183 DVKYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNADNVFKIVDS-PHPLIVKK 238
Query: 271 LLKV----DSFQVLEKYIEDLILEAYSATQL 297
+L DS Q+L DL + YS+ +
Sbjct: 239 MLLASNLEDSIQILRT---DLWKKGYSSIDI 266
Score = 121 (47.7 bits), Expect = 0.00015, P = 0.00015
Identities = 38/140 (27%), Positives = 71/140 (50%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWI-EKLLKV---- 375
LE ++ T+ GDMR+AI LQS G G+VN D V ++ P+P I +K+L
Sbjct: 191 LEAIIFTAEGDMRQAINNLQSTV---AGHGLVNADNVFKIVDS-PHPLIVKKMLLASNLE 246
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
DS Q+L DL + YS+ + + + + + + + +++++ + R+ +G
Sbjct: 247 DSIQILRT---DLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGV 303
Query: 436 SEYIQILDLGSIVIKANKTA 455
Y+Q+ + + + K N A
Sbjct: 304 GTYLQLASMLAKIHKLNNKA 323
>TAIR|locus:2015233 [details] [associations]
symbol:RFC2 "replication factor C 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 EMBL:AC010795 HOGENOM:HOG000224155 Pfam:PF08542
OMA:TMELYSN HSSP:Q8U4J3 EMBL:BT031353 IPI:IPI00535046 PIR:B96657
RefSeq:NP_176504.1 UniGene:At.36170 ProteinModelPortal:Q9CAM7
SMR:Q9CAM7 STRING:Q9CAM7 PaxDb:Q9CAM7 PRIDE:Q9CAM7
EnsemblPlants:AT1G63160.1 GeneID:842620 KEGG:ath:AT1G63160
TAIR:At1g63160 InParanoid:Q9CAM7 PhylomeDB:Q9CAM7
ProtClustDB:PLN03025 Genevestigator:Q9CAM7 Uniprot:Q9CAM7
Length = 333
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 120/306 (39%), Positives = 176/306 (57%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP + D++ ++ VS L+ ++P+ + GPPGTGKT++++A H+L G
Sbjct: 16 PWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGT 75
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
Y+E +LELNASDDRGI V+R+K+K FAQ+ + P K+VILDEADSMT A
Sbjct: 76 NYKEAVLELNASDDRGIDVVRNKIKMFAQKKVT------LPPGRHKVVILDEADSMTSGA 129
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRT+E + STRF L CN + II+P+ SRC+ RF L++ +L RL + E
Sbjct: 130 QQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLLVVVAAEK 189
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW-IEKLL 272
V + LE ++ T+ GDMR+A+ LQ A G + E+V +V P P ++ ++
Sbjct: 190 VPYVPEGLEAIIFTADGDMRQALNNLQ--ATFSGFSFVNQENVFKVCDQ-PHPLHVKNIV 246
Query: 273 KVDSFQVLEKYIEDLILEAYSATQLFDQFH---DIVM-LASSLSDKQKALFKALETLVET 328
+ VLE D+ + QL+D + DI+ L + + A + LE + ET
Sbjct: 247 R----NVLESKF-DIACDGLK--QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKET 299
Query: 329 SGGDMR 334
MR
Sbjct: 300 GFAHMR 305
>DICTYBASE|DDB_G0291868 [details] [associations]
symbol:rfc2 "replication factor C subunit 2"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0006298
"mismatch repair" evidence=ISS] [GO:0006272 "leading strand
elongation" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0291868 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000155_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000186 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 OMA:IQCLARI Pfam:PF08542 RefSeq:XP_629875.1
HSSP:P40339 ProteinModelPortal:Q54E21 SMR:Q54E21 STRING:Q54E21
EnsemblProtists:DDB0232231 GeneID:8628373 KEGG:ddi:DDB_G0291868
ProtClustDB:CLSZ2728742 Uniprot:Q54E21
Length = 338
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 119/321 (37%), Positives = 179/321 (55%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP I D++ +E VS L+ +LP+ + GPPGTGKTS+++ L G
Sbjct: 20 LPWVEKYRPILIKDIVGNEETVSRLESISKDGNLPNIIISGPPGTGKTSSILCLARALLG 79
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y+E + ELNASDDR + V+RDK+K+FA + + P KI+ILDE DSMT
Sbjct: 80 ANYKEAVYELNASDDRTLDVVRDKIKSFAMKKVT------LPAGRHKIIILDEVDSMTSG 133
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR ME + +TRF CN + II+P+ SRC+ RF L+++ +LTRL+ + + E
Sbjct: 134 AQQALRRIMEIYSGTTRFAFACNQSTKIIEPIQSRCAVLRFTRLSDSQILTRLREVVQIE 193
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPKPWIEK- 270
V L ++ T+ GDMR+A+ LQ+ G G++N E+V +V P P I K
Sbjct: 194 KVPYTDDGLAAIIFTAEGDMRQALNNLQAT---HSGFGLINAENVTKVCDQ-PHPLIIKQ 249
Query: 271 ---LLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVE 327
L F+ +++ L + YS+ + I ++++ + QK LE L E
Sbjct: 250 IIALCAKSDFKEAYPFLKKLWDDGYSSIDIISALFSITKSSNNIPEYQK-----LEFLKE 304
Query: 328 TSGGDMRRAITCLQSCARLKG 348
++R A T + + +L G
Sbjct: 305 IGFCNLR-ATTGVNTLVQLTG 324
Score = 118 (46.6 bits), Expect = 0.00035, P = 0.00035
Identities = 39/157 (24%), Positives = 75/157 (47%)
Query: 293 SATQLFDQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 352
S +Q+ + ++V + +K L ++ T+ GDMR+A+ LQ+ G G+
Sbjct: 178 SDSQILTRLREVVQI-----EKVPYTDDGLAAIIFTAEGDMRQALNNLQAT---HSGFGL 229
Query: 353 VN-EDVLEVTGVIPNPWIEK----LLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 407
+N E+V +V P+P I K L F+ +++ L + YS+ + I
Sbjct: 230 INAENVTKVCDQ-PHPLIIKQIIALCAKSDFKEAYPFLKKLWDDGYSSIDIISALFSITK 288
Query: 408 SASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 444
S++++ + QK L+++ CN R G + +Q+ L
Sbjct: 289 SSNNIPEYQKLEFLKEIGFCNLRATTGVNTLVQLTGL 325
>POMBASE|SPAC1687.03c [details] [associations]
symbol:rfc4 "DNA replication factor C complex subunit
Rfc4 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0031389 "Rad17 RFC-like complex"
evidence=TAS] [GO:0031390 "Ctf18 RFC-like complex" evidence=TAS]
[GO:0031391 "Elg1 RFC-like complex" evidence=IDA] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=TAS] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748
PomBase:SPAC1687.03c GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0007049 GO:GO:0000790
GO:GO:0043596 GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0031390
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 HOGENOM:HOG000224155 Pfam:PF08542 PIR:T37746
RefSeq:NP_593121.1 ProteinModelPortal:O94449 SMR:O94449
STRING:O94449 EnsemblFungi:SPAC1687.03c.1 GeneID:2542790
KEGG:spo:SPAC1687.03c OMA:GTYELPW OrthoDB:EOG4PP1RM
NextBio:20803834 Uniprot:O94449
Length = 342
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 118/300 (39%), Positives = 166/300 (55%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD++ +E + LK ++PH + G PG GKT++++ H L G
Sbjct: 21 LPWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLG 80
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y+E +LELNASD+RGI V+R+++K FAQ+ P KI+ILDEADSMT
Sbjct: 81 PAYKEGVLELNASDERGIDVVRNRIKAFAQKKVI------LPPGRHKIIILDEADSMTAG 134
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME + +TRF L CN + II+P+ SRC+ R+ L + +L RL IC+ E
Sbjct: 135 AQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAE 194
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPKPW-IEK 270
V L L+ T+ GDMR+A+ LQS G G+VN E+V V P P I
Sbjct: 195 KVNYTDDGLAALIMTAEGDMRQAVNNLQSTV---AGFGLVNGENVFRVADQ-PSPVAIHA 250
Query: 271 LLKVDSFQVLEKYIEDL--ILE-AYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVE 327
+L ++ +E L I + +SA + +V S+ + F LE L E
Sbjct: 251 MLTACQSGNIDVALEKLQGIWDLGFSAVDIVTNMFRVVKTMDSIPE-----FSRLEMLKE 305
>GENEDB_PFALCIPARUM|PFL2005w [details] [associations]
symbol:PFL2005w "replication factor c subunit 4"
species:5833 "Plasmodium falciparum" [GO:0006260 "DNA replication"
evidence=ISS] [GO:0005663 "DNA replication factor C complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 105/246 (42%), Positives = 154/246 (62%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
RN + W+EKYRP+ +D+V+ V++ LK ++ ++P+ L G PGTGKT++++
Sbjct: 13 RNIDI-WIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSILCLAS 71
Query: 89 QLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148
++ G+ ++ +LELNASDDRGI VIRD++K+FA++ S GK KI+ILDE DS
Sbjct: 72 EMLGNQAKKAVLELNASDDRGINVIRDRIKSFAKEIIS--LPPGK----HKIIILDEVDS 125
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AAQ +LRR ME + +TRF L CN II L SRC+ R+ L+++ +L R+ I
Sbjct: 126 MTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRILKI 185
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW- 267
C+ E++ L+ L + GD+R+A+ CLQS G E I E+VL + IP P
Sbjct: 186 CDLENIKYTDDGLDALTFIADGDLRKAVNCLQST--YAGLEVINKENVLHICD-IPSPER 242
Query: 268 IEKLLK 273
IE LLK
Sbjct: 243 IENLLK 248
>UNIPROTKB|Q8I512 [details] [associations]
symbol:PFL2005w "Replication factor C subunit 4"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 105/246 (42%), Positives = 154/246 (62%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
RN + W+EKYRP+ +D+V+ V++ LK ++ ++P+ L G PGTGKT++++
Sbjct: 13 RNIDI-WIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSILCLAS 71
Query: 89 QLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148
++ G+ ++ +LELNASDDRGI VIRD++K+FA++ S GK KI+ILDE DS
Sbjct: 72 EMLGNQAKKAVLELNASDDRGINVIRDRIKSFAKEIIS--LPPGK----HKIIILDEVDS 125
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AAQ +LRR ME + +TRF L CN II L SRC+ R+ L+++ +L R+ I
Sbjct: 126 MTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRILKI 185
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW- 267
C+ E++ L+ L + GD+R+A+ CLQS G E I E+VL + IP P
Sbjct: 186 CDLENIKYTDDGLDALTFIADGDLRKAVNCLQST--YAGLEVINKENVLHICD-IPSPER 242
Query: 268 IEKLLK 273
IE LLK
Sbjct: 243 IENLLK 248
>CGD|CAL0000922 [details] [associations]
symbol:RFC4 species:5476 "Candida albicans" [GO:0003689 "DNA
clamp loader activity" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 CGD:CAL0000922
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000032 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
HOGENOM:HOG000224155 Pfam:PF08542 RefSeq:XP_719417.1
ProteinModelPortal:Q5ACI4 SMR:Q5ACI4 STRING:Q5ACI4 GeneID:3638994
KEGG:cal:CaO19.7658 Uniprot:Q5ACI4
Length = 323
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 124/330 (37%), Positives = 182/330 (55%)
Query: 30 NKPV----PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIA 85
+KPV PWVEKYRPK ++D++ +E V LK + ++P+ + G PG GKT+++
Sbjct: 2 SKPVTLELPWVEKYRPKKLEDIVGNEETVERLKLIVQDGNMPNMIISGLPGIGKTTSIHC 61
Query: 86 ACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPF--KIVI 142
++L GD Y + +ELNASDDRGI V+R+K+K FAQ S PP KI+I
Sbjct: 62 LAYELLGDEHYHQATMELNASDDRGIDVVRNKIKQFAQTKIS--------LPPGRQKIII 113
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEADSMT AQ ALRRT+E + +TRF CN S II+PL SRC+ R+ L++ +L
Sbjct: 114 LDEADSMTPGAQQALRRTIEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNRLSDEEVL 173
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE-DVLEVTG 261
RL I + E V + + L+ L+ T+ GDMR+AI LQS G G VN+ +V ++
Sbjct: 174 ARLLEIIKMEDVKYNTEGLQALIFTAEGDMRQAINNLQSTV---AGFGFVNDVNVFKIVD 230
Query: 262 VIPKPWIEK--LLKVDSFQVLEK---YIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
P P + + LL + ++K ++ L + YSA + + ++S++
Sbjct: 231 Q-PHPLVIQSILLSCLKDKDIDKALGLLDGLWYKGYSAIDIVTSTFKVAKTIPNISEQ-- 287
Query: 317 ALFKALETLVETSGGDMR---RAITCLQSC 343
K L+ + E MR T LQ C
Sbjct: 288 ---KRLDVIKEIGFAHMRVLEGVATYLQLC 314
>MGI|MGI:1341868 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1341868
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 EMBL:AF289664
SUPFAM:SSF48019 GO:GO:0005663 EMBL:AF139987 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
ChiTaRS:RFC2 EMBL:AK075997 EMBL:BC023028 IPI:IPI00124744
RefSeq:NP_064406.1 UniGene:Mm.332739 ProteinModelPortal:Q9WUK4
SMR:Q9WUK4 STRING:Q9WUK4 PhosphoSite:Q9WUK4 PaxDb:Q9WUK4
PRIDE:Q9WUK4 Ensembl:ENSMUST00000023867 GeneID:19718 KEGG:mmu:19718
InParanoid:Q9WUK4 NextBio:297116 Bgee:Q9WUK4 CleanEx:MM_RFC2
Genevestigator:Q9WUK4 GermOnline:ENSMUSG00000023104 Uniprot:Q9WUK4
Length = 349
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 103/239 (43%), Positives = 148/239 (61%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +++++ ++ VS L+ ++P+ + GPPGTGKT++++ L G
Sbjct: 31 LPWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLG 90
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ +LELNAS+DRGI V+R+K+K FAQQ + P KI+ILDEADSMT
Sbjct: 91 PALKDAVLELNASNDRGIDVVRNKIKMFAQQKVT------LPKGRHKIIILDEADSMTDG 144
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +K+TRF L CN II+P+ SRC+ R+ L + +LTRL + E+E
Sbjct: 145 AQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKE 204
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPKPWIEK 270
V LE ++ T+ GDMR+A+ LQS G G +N E+V +V P P + K
Sbjct: 205 KVPYTDDGLEAIIFTAQGDMRQALNNLQSTF---SGFGYINSENVFKVCDE-PHPLLVK 259
>UNIPROTKB|P35250 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006260 "DNA replication"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=TAS] [GO:0032201 "telomere maintenance via
semi-conservative replication" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 Reactome:REACT_115566
GO:GO:0005654 GO:GO:0003677 GO:GO:0017111 GO:GO:0000084 KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722 EMBL:CH471200
Orphanet:904 Reactome:REACT_383 GO:GO:0006283 GO:GO:0006271
GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019 GO:GO:0005663
EMBL:AF045555 EMBL:AC005081 CTD:5982 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI Pfam:PF08542 EMBL:M87338
EMBL:AF483622 EMBL:AB451243 EMBL:BC002813 IPI:IPI00017412
IPI:IPI00218280 PIR:A42700 RefSeq:NP_002905.2 RefSeq:NP_852136.1
UniGene:Hs.647062 ProteinModelPortal:P35250 SMR:P35250
DIP:DIP-34367N IntAct:P35250 STRING:P35250 PhosphoSite:P35250
DMDM:2507300 PaxDb:P35250 PeptideAtlas:P35250 PRIDE:P35250
DNASU:5982 Ensembl:ENST00000055077 Ensembl:ENST00000352131
Ensembl:ENST00000573234 Ensembl:ENST00000576908 GeneID:5982
KEGG:hsa:5982 UCSC:uc003uaj.3 GeneCards:GC07M073645 HGNC:HGNC:9970
HPA:HPA029493 MIM:194050 MIM:600404 neXtProt:NX_P35250
PharmGKB:PA34339 InParanoid:P35250 PhylomeDB:P35250 ChiTaRS:RFC2
GenomeRNAi:5982 NextBio:23285 ArrayExpress:P35250 Bgee:P35250
CleanEx:HS_RFC2 Genevestigator:P35250 GermOnline:ENSG00000049541
Uniprot:P35250
Length = 354
Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
Identities = 103/239 (43%), Positives = 148/239 (61%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +++++ ++ VS L+ ++P+ + GPPGTGKT++++ L G
Sbjct: 36 LPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLG 95
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ +LELNAS+DRGI V+R+K+K FAQQ + P KI+ILDEADSMT
Sbjct: 96 PALKDAMLELNASNDRGIDVVRNKIKMFAQQKVT------LPKGRHKIIILDEADSMTDG 149
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +K+TRF L CN II+P+ SRC+ R+ L + +LTRL + E+E
Sbjct: 150 AQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKE 209
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPKPWIEK 270
V LE ++ T+ GDMR+A+ LQS G G +N E+V +V P P + K
Sbjct: 210 RVPYTDDGLEAIIFTAQGDMRQALNNLQSTF---SGFGFINSENVFKVCDE-PHPLLVK 264
>ZFIN|ZDB-GENE-050306-29 [details] [associations]
symbol:rfc2 "replication factor C (activator 1) 2"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-050306-29 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 SUPFAM:SSF48019 GeneTree:ENSGT00550000075050
Pfam:PF08542 EMBL:CR450711 IPI:IPI00505688
Ensembl:ENSDART00000122513 Bgee:F1R0T0 Uniprot:F1R0T0
Length = 384
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 101/239 (42%), Positives = 148/239 (61%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +++++ +E VS L+ ++P+ + GPPGTGKT++++ L G
Sbjct: 66 LPWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLG 125
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ +LELNAS+DRGI V+R+K+K FAQQ + P KI+ILDEADSMT
Sbjct: 126 PAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVT------LPKGRHKIIILDEADSMTDG 179
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +K+TRF L CN II+P+ SRC+ R+ L + ++ RL + E+E
Sbjct: 180 AQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEKE 239
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPKPWIEK 270
++ LE ++ T+ GDMR+A+ LQS G G +N E+V +V P P + K
Sbjct: 240 NLHVTNDGLEAIIFTAQGDMRQALNNLQST---NSGFGYINSENVFKVCDE-PHPLLVK 294
>UNIPROTKB|P53033 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006302
"double-strand break repair" evidence=TAS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005654 GO:GO:0003677
GO:GO:0006260 GO:GO:0000724 GO:GO:0017111 KO:K10755 eggNOG:COG0470
Reactome:REACT_115612 SUPFAM:SSF48019 GO:GO:0005663 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
EMBL:U12438 IPI:IPI00586061 PIR:I50704 RefSeq:NP_990861.1
UniGene:Gga.883 ProteinModelPortal:P53033 SMR:P53033 STRING:P53033
Ensembl:ENSGALT00000001980 GeneID:396542 KEGG:gga:396542
InParanoid:P53033 NextBio:20816578 Uniprot:P53033
Length = 359
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 104/239 (43%), Positives = 147/239 (61%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + +V+ ++ VS L+ ++P+ + GPPGTGKT++++ L G
Sbjct: 41 LPWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLG 100
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ +LELNAS+DRGI V+R+K+K FAQQ + P KI+ILDEADSMT
Sbjct: 101 PALKDAVLELNASNDRGIDVVRNKIKMFAQQKVT------LPKGRHKIIILDEADSMTDG 154
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +K+TRF L CN II+P+ SRC+ R+ L ++ +L RL I E+E
Sbjct: 155 AQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKE 214
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPKPWIEK 270
V LE ++ T+ GDMR+A+ LQS G G +N E+V +V P P + K
Sbjct: 215 DVPYTDDGLEAIIFTAQGDMRQALNNLQSTY---SGFGFINSENVFKVCDE-PHPLLVK 269
>UNIPROTKB|Q05B83 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 EMBL:BC122635 IPI:IPI00704020
RefSeq:NP_001074372.1 UniGene:Bt.35362 ProteinModelPortal:Q05B83
SMR:Q05B83 STRING:Q05B83 PRIDE:Q05B83 Ensembl:ENSBTAT00000024740
GeneID:508652 KEGG:bta:508652 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 InParanoid:Q05B83
OMA:IQCLARI OrthoDB:EOG48WC2D NextBio:20868620 ArrayExpress:Q05B83
Pfam:PF08542 Uniprot:Q05B83
Length = 352
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 102/239 (42%), Positives = 147/239 (61%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +++++ ++ VS L+ ++P+ + GPPGTGKT++++ L G
Sbjct: 34 LPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLG 93
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ +LELNAS+DRGI V+R+K+K FAQQ + P KI+ILDEADSMT
Sbjct: 94 PALKDAVLELNASNDRGIDVVRNKIKMFAQQKVT------LPKGRHKIIILDEADSMTDG 147
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +K+TRF L CN II+P+ SRC+ R+ L + +L RL + E+E
Sbjct: 148 AQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLSVIEKE 207
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPKPWIEK 270
V LE ++ T+ GDMR+A+ LQS G G +N E+V +V P P + K
Sbjct: 208 KVQYTDDGLEAIIFTAQGDMRQALNNLQSTY---SGFGFINSENVFKVCDE-PHPLLVK 262
>UNIPROTKB|E2QSU1 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
Ensembl:ENSCAFT00000019010 Uniprot:E2QSU1
Length = 316
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 102/239 (42%), Positives = 148/239 (61%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +++++ ++ VS L+ ++P+ + GPPGTGKT++++ L G
Sbjct: 34 LPWVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLG 93
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ +LELNAS+DRGI V+R+K+K FAQQ + P KI+ILDEADSMT
Sbjct: 94 PALKDAVLELNASNDRGIDVVRNKIKMFAQQKVT------LPKGRHKIIILDEADSMTDG 147
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +K+TRF L CN II+P+ SRC+ R+ L++ +L RL + EQE
Sbjct: 148 AQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQE 207
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPKPWIEK 270
V LE ++ T+ GDMR+A+ +QS G G +N E+V +V P P + K
Sbjct: 208 KVPYTDDGLEAVIFTAQGDMRQALNNVQSTF---SGFGFINSENVFKVCDE-PHPLLVK 262
>UNIPROTKB|F6ULR2 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 OMA:IQCLARI
Pfam:PF08542 Ensembl:ENSCAFT00000019010 EMBL:AAEX03004231
EMBL:AAEX03004232 Uniprot:F6ULR2
Length = 364
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 102/239 (42%), Positives = 148/239 (61%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +++++ ++ VS L+ ++P+ + GPPGTGKT++++ L G
Sbjct: 46 LPWVEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLG 105
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ +LELNAS+DRGI V+R+K+K FAQQ + P KI+ILDEADSMT
Sbjct: 106 PALKDAVLELNASNDRGIDVVRNKIKMFAQQKVT------LPKGRHKIIILDEADSMTDG 159
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +K+TRF L CN II+P+ SRC+ R+ L++ +L RL + EQE
Sbjct: 160 AQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQE 219
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPKPWIEK 270
V LE ++ T+ GDMR+A+ +QS G G +N E+V +V P P + K
Sbjct: 220 KVPYTDDGLEAVIFTAQGDMRQALNNVQSTF---SGFGFINSENVFKVCDE-PHPLLVK 274
>RGD|621198 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:621198
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 OMA:IQCLARI
OrthoDB:EOG48WC2D Pfam:PF08542 HSSP:P40339 EMBL:BC082110
IPI:IPI00194781 RefSeq:NP_446238.1 UniGene:Rn.113319
ProteinModelPortal:Q641W4 SMR:Q641W4 STRING:Q641W4 PRIDE:Q641W4
Ensembl:ENSRNOT00000001989 GeneID:116468 KEGG:rno:116468
UCSC:RGD:621198 InParanoid:Q641W4 NextBio:619010
Genevestigator:Q641W4 Uniprot:Q641W4
Length = 349
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 102/239 (42%), Positives = 148/239 (61%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +++++ ++ VS L+ ++P+ + GPPGTGKT++++ L G
Sbjct: 31 LPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLG 90
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ +LELNAS+DRGI V+R+K+K FAQQ + P KI+ILDEADSMT
Sbjct: 91 PALKDAVLELNASNDRGIDVVRNKIKMFAQQKVT------LPKGRHKIIILDEADSMTDG 144
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +K+TRF L CN II+P+ SRC+ R+ L + +L+RL + E+E
Sbjct: 145 AQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKE 204
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPKPWIEK 270
V LE ++ T+ GDMR+A+ LQS G G +N E+V +V P P + K
Sbjct: 205 KVPYTDDGLEAIIFTAQGDMRQALNNLQSTF---SGFGYINSENVFKVCDE-PHPLLVK 259
>FB|FBgn0260985 [details] [associations]
symbol:RfC4 "Replication factor C subunit 4" species:7227
"Drosophila melanogaster" [GO:0007076 "mitotic chromosome
condensation" evidence=IMP;NAS] [GO:0000819 "sister chromatid
segregation" evidence=NAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=NAS;TAS] [GO:0006260 "DNA replication"
evidence=ISS;NAS;TAS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;NAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA;NAS]
[GO:0016321 "female meiosis chromosome segregation" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0000077 "DNA damage checkpoint" evidence=IMP]
[GO:0000076 "DNA replication checkpoint" evidence=IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0000077
GO:GO:0005875 EMBL:AE014296 GO:GO:0022008 GO:GO:0003677
GO:GO:0006281 GO:GO:0046331 GO:GO:0017111 GO:GO:0007076 KO:K10755
eggNOG:COG0470 GO:GO:0016321 GO:GO:0000076 GO:GO:0006271
SUPFAM:SSF48019 EMBL:U15967 GeneTree:ENSGT00550000075050
OMA:IQCLARI Pfam:PF08542 EMBL:AY094829 PIR:S55020
RefSeq:NP_523915.1 UniGene:Dm.839 ProteinModelPortal:P53034
SMR:P53034 DIP:DIP-22077N IntAct:P53034 MINT:MINT-925288
STRING:P53034 PaxDb:P53034 PRIDE:P53034 EnsemblMetazoa:FBtr0073264
GeneID:38492 KEGG:dme:Dmel_CG14999 CTD:5984 FlyBase:FBgn0260985
InParanoid:P53034 OrthoDB:EOG4P8D0Q PhylomeDB:P53034
GenomeRNAi:38492 NextBio:808930 Bgee:P53034 GermOnline:CG14999
Uniprot:P53034
Length = 331
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 100/241 (41%), Positives = 145/241 (60%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PW+EKYRP +++ ++ V+ L + + P+ + GPPG GKT+T+ L G
Sbjct: 16 LPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLG 75
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D Y+E +LELNAS++RGI V+R+K+K FAQQ + P KIVILDEADSMT
Sbjct: 76 DSYKEAVLELNASNERGIDVVRNKIKMFAQQKVT------LPRGRHKIVILDEADSMTEG 129
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME + +TRF L CN II+P+ SRC+ RF L++ +L +L + + E
Sbjct: 130 AQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWE 189
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP-WIEKL 271
+ LE +V T+ GDMR+ + LQS A+ G I E+V +V P P +E++
Sbjct: 190 KLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQ--GFGDITAENVFKVCDE-PHPKLLEEM 246
Query: 272 L 272
+
Sbjct: 247 I 247
>UNIPROTKB|I3LHX6 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 GeneTree:ENSGT00550000075050 OMA:IQCLARI Pfam:PF08542
EMBL:FP340223 Ensembl:ENSSSCT00000028815 Uniprot:I3LHX6
Length = 295
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 91/207 (43%), Positives = 127/207 (61%)
Query: 65 DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQT 124
++P+ + GPPGTGKT++++ L G ++ +LELNAS+DRGI V+R+K+K FAQQ
Sbjct: 9 NVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQK 68
Query: 125 ASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPL 184
+ P KI+ILDEADSMT AQ ALRRTME +K+TRF L CN II+P+
Sbjct: 69 VT------LPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPI 122
Query: 185 TSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244
SRC+ R+ L + +L RL + E+E V LE ++ T+ GDMR+A+ LQS
Sbjct: 123 QSRCAVLRYTKLTDAQILARLLNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTF- 181
Query: 245 LKGGEGIVN-EDVLEVTGVIPKPWIEK 270
G G +N E+V +V P P + K
Sbjct: 182 --SGFGFINSENVFKVCDE-PHPLLVK 205
>UNIPROTKB|F8W9B4 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR008921
InterPro:IPR013748 GO:GO:0003677 GO:GO:0006260 KO:K10756
SUPFAM:SSF48019 Pfam:PF08542 EMBL:AC131159 RefSeq:NP_001123584.1
UniGene:Hs.731908 DNASU:5985 GeneID:5985 KEGG:hsa:5985 CTD:5985
HGNC:HGNC:9973 GenomeRNAi:5985 NextBio:23303 IPI:IPI00908568
ProteinModelPortal:F8W9B4 SMR:F8W9B4 PRIDE:F8W9B4
Ensembl:ENST00000229043 ArrayExpress:F8W9B4 Bgee:F8W9B4
Uniprot:F8W9B4
Length = 255
Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
Identities = 81/163 (49%), Positives = 106/163 (65%)
Query: 99 ILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALR 158
+LELNASDDRGI +IR + +FA T + F + FK+VILDEAD+MT AQ ALR
Sbjct: 2 VLELNASDDRGIDIIRGPILSFAS-TRTIFKKG------FKLVILDEADAMTQDAQNALR 54
Query: 159 RTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDF 218
R +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+++ E+E V
Sbjct: 55 RVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISE 114
Query: 219 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
++ LV S GDMRRA+ LQS + G+ + E V TG
Sbjct: 115 DGMKALVTLSSGDMRRALNILQS-TNMAFGK-VTEETVYTCTG 155
>UNIPROTKB|C9JXZ7 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003959 Pfam:PF00004 GO:GO:0005524 EMBL:AC112907
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00795756
ProteinModelPortal:C9JXZ7 SMR:C9JXZ7 STRING:C9JXZ7
Ensembl:ENST00000427785 HOGENOM:HOG000185875 ArrayExpress:C9JXZ7
Bgee:C9JXZ7 Uniprot:C9JXZ7
Length = 123
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 68/123 (55%), Positives = 87/123 (70%)
Query: 1 MEAFLRTGKLGKDAPXX-----XXXXXXXXXXXRNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKV 117
+KV
Sbjct: 121 EKV 123
>SGD|S000000291 [details] [associations]
symbol:RFC5 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0031390 "Ctf18
RFC-like complex" evidence=IPI] [GO:0003689 "DNA clamp loader
activity" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IMP;IPI] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA;IMP] [GO:0006298
"mismatch repair" evidence=TAS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031389 "Rad17 RFC-like complex" evidence=IDA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 SGD:S000000291 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:BK006936 GO:GO:0006298 EMBL:X78993
RefSeq:NP_009644.3 GeneID:852383 KEGG:sce:YBR087W KO:K10756
GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
EMBL:Z35956 PDB:1SXJ PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153 OMA:TRIMCLL
OrthoDB:EOG4R273P EMBL:U26031 EMBL:AY693173 PIR:S48257
RefSeq:NP_009648.4 ProteinModelPortal:P38251 SMR:P38251
DIP:DIP-2531N IntAct:P38251 MINT:MINT-480383 STRING:P38251
PaxDb:P38251 PeptideAtlas:P38251 EnsemblFungi:YBR087W GeneID:852387
KEGG:sce:YBR090C CYGD:YBR087w EvolutionaryTrace:P38251
NextBio:971189 Genevestigator:P38251 GermOnline:YBR087W
Uniprot:P38251
Length = 354
Score = 214 (80.4 bits), Expect = 7.1e-26, Sum P(2) = 7.1e-26
Identities = 66/195 (33%), Positives = 105/195 (53%)
Query: 100 LELNASD--DRGIQVIRDKVKTFAQQTASGFNQDGKP--CPPFKIVILDEADSMTHAAQA 155
LE+ SD + VI++ +K AQ F QD K +K VI++EA+S+T AQA
Sbjct: 94 LEITPSDMGNNDRIVIQELLKEVAQMEQVDF-QDSKDGLAHRYKCVIINEANSLTKDAQA 152
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
ALRRTMEK +K+ R ++C+ +S II P+ SRC R +++ + T L + E +
Sbjct: 153 ALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILSDVVTNERIQ 212
Query: 216 CDFK-ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP-WIEKLLK 273
+ K L+ + + S G++R ++ L+S A + NE L+ + I KP WI + K
Sbjct: 213 LETKDILKRIAQASNGNLRVSLLMLESMA-------LNNELALKSSSPIIKPDWIIVIHK 265
Query: 274 VDSFQVLEKYIEDLI 288
+ V E+ + LI
Sbjct: 266 LTRKIVKERSVNSLI 280
Score = 140 (54.3 bits), Expect = 7.1e-26, Sum P(2) = 7.1e-26
Identities = 30/68 (44%), Positives = 43/68 (63%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFG 92
WV+KYRPK+++ + +E+ + LK LS DLPH L YGP GTGK + +A +FG
Sbjct: 4 WVDKYRPKSLNALSHNEELTNFLKS-LSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62
Query: 93 D-MYRERI 99
+YR +I
Sbjct: 63 PGVYRLKI 70
Score = 59 (25.8 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 26/118 (22%), Positives = 50/118 (42%)
Query: 322 LETLVETSGGDMRRAITCLQSCA-----RLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVD 376
L+ + + S G++R ++ L+S A LK I+ D + V + I K V+
Sbjct: 219 LKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRK-IVKERSVN 277
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
S + DL+ A + + ++ +L+ K+ I+E + + RL G
Sbjct: 278 SLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLG 335
>TAIR|locus:2180315 [details] [associations]
symbol:EMB2775 "EMBRYO DEFECTIVE 2775" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006260
KO:K10756 GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
HOGENOM:HOG000224153 OMA:TRIMCLL HSSP:Q8U4J3 EMBL:AY074381
EMBL:AY091236 IPI:IPI00528406 RefSeq:NP_198126.1 UniGene:At.19785
ProteinModelPortal:Q8VXX4 SMR:Q8VXX4 STRING:Q8VXX4 PaxDb:Q8VXX4
PRIDE:Q8VXX4 EnsemblPlants:AT5G27740.1 GeneID:832836
KEGG:ath:AT5G27740 TAIR:At5g27740 InParanoid:Q8VXX4
PhylomeDB:Q8VXX4 ProtClustDB:CLSN2687133 ArrayExpress:Q8VXX4
Genevestigator:Q8VXX4 Uniprot:Q8VXX4
Length = 354
Score = 180 (68.4 bits), Expect = 3.2e-24, Sum P(2) = 3.2e-24
Identities = 56/193 (29%), Positives = 91/193 (47%)
Query: 100 LELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRR 159
+EL SD G Q R V+ ++ A D K +K+++L+E D ++ AQ +LRR
Sbjct: 95 VELTPSD-AGFQD-RYIVQEIIKEMAKNRPIDTKGKKGYKVLVLNEVDKLSREAQHSLRR 152
Query: 160 TMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFK 219
TMEK + S R L CN S + + + SRC R ++ ++ L+++ ++ES+
Sbjct: 153 TMEKYSSSCRLILCCNSSSKVTEAIKSRCLNVRINAPSQEEIVKVLEFVAKKESLQLPQG 212
Query: 220 ALETLVETSGGDMRRAITCLQSCA----RLKGGEGIVNEDVLEVTGVIPKPWIEKLLKVD 275
+ E S +RRAI L++C G + I D E I +++
Sbjct: 213 FAARIAEKSNRSLRRAILSLETCRVQNYPFTGNQVISPMDWEEYVAEIATDMMKEQSPKK 272
Query: 276 SFQVLEKYIEDLI 288
FQV K E L+
Sbjct: 273 LFQVRGKVYELLV 285
Score = 165 (63.1 bits), Expect = 3.2e-24, Sum P(2) = 3.2e-24
Identities = 28/58 (48%), Positives = 41/58 (70%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
WV+KYRPK++D VI +++ LKK +S D PH LFYGP G+GK + ++A Q++G
Sbjct: 3 WVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60
Score = 44 (20.5 bits), Expect = 7.3e-10, Sum P(2) = 7.3e-10
Identities = 19/69 (27%), Positives = 28/69 (40%)
Query: 325 LVETSGGDMRRAITCLQSCA----RLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQV 380
+ E S +RRAI L++C G + I D E I +++ FQV
Sbjct: 217 IAEKSNRSLRRAILSLETCRVQNYPFTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQV 276
Query: 381 LEKYIEDLI 389
K E L+
Sbjct: 277 RGKVYELLV 285
>WB|WBGene00004339 [details] [associations]
symbol:rfc-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003677 GO:GO:0006260 GO:GO:0040011
GO:GO:0006974 GO:GO:0040035 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
HOGENOM:HOG000224153 OMA:TRIMCLL EMBL:Z70307 HSSP:Q8U4J3 PIR:T19856
RefSeq:NP_502517.1 ProteinModelPortal:Q18547 SMR:Q18547
DIP:DIP-27479N IntAct:Q18547 MINT:MINT-228120 STRING:Q18547
PaxDb:Q18547 EnsemblMetazoa:C39E9.13.1 EnsemblMetazoa:C39E9.13.2
GeneID:178259 KEGG:cel:CELE_C39E9.13 UCSC:C39E9.13 CTD:178259
WormBase:C39E9.13 InParanoid:Q18547 NextBio:900398 Uniprot:Q18547
Length = 354
Score = 214 (80.4 bits), Expect = 8.4e-22, Sum P(2) = 8.4e-22
Identities = 66/194 (34%), Positives = 101/194 (52%)
Query: 100 LELNASDDRGIQ---VIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAA 156
+E+ SD GI V++D VK AQ S + FK+V+L EADS+T AQ
Sbjct: 95 IEMTPSDV-GIYDRVVVQDLVKEMAQ--TSQIESTSQRS--FKVVVLCEADSLTRDAQHG 149
Query: 157 LRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMC 216
LRRTMEK + + L C +S II+PL SRC + + L+ + E+ES +
Sbjct: 150 LRRTMEKYANNCKIVLSCESLSRIIEPLQSRCIIINVPAPTDEDVTKVLRKVIERESFLL 209
Query: 217 DFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKVDS 276
L+ +VE S G++RRAI ++ R++ G+ E V VIP P E ++ +
Sbjct: 210 PENVLQKIVEKSEGNLRRAILMTEAL-RMENESGVA-ESV-----VIPVPEWEIYIQETA 262
Query: 277 FQVLEKYIEDLILE 290
+L+K D++L+
Sbjct: 263 RLILQKQSSDMLLK 276
Score = 101 (40.6 bits), Expect = 8.4e-22, Sum P(2) = 8.4e-22
Identities = 25/61 (40%), Positives = 33/61 (54%)
Query: 35 WVEKYRPKTI---DDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91
WV+KYRPK + D V E + LK LS +PH LF GP G GK + + +L+
Sbjct: 4 WVDKYRPKDLLGKDGVDYHIEQANHLK-FLSADCMPHLLFCGPSGAGKKTRIKCLLRELY 62
Query: 92 G 92
G
Sbjct: 63 G 63
Score = 71 (30.1 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 24/91 (26%), Positives = 47/91 (51%)
Query: 303 DIVMLASSLSDKQKALF--KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 360
D+ + + +++ L L+ +VE S G++RRAI ++ R++ G+ E V
Sbjct: 193 DVTKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAILMTEAL-RMENESGVA-ESV--- 247
Query: 361 TGVIPNPWIEKLLKVDSFQVLEKYIEDLILE 391
VIP P E ++ + +L+K D++L+
Sbjct: 248 --VIPVPEWEIYIQETARLILQKQSSDMLLK 276
>UNIPROTKB|Q18547 [details] [associations]
symbol:rfc-3 "Protein RFC-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0009792 GO:GO:0040010
GO:GO:0003677 GO:GO:0006260 GO:GO:0040011 GO:GO:0006974
GO:GO:0040035 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
HOGENOM:HOG000224153 OMA:TRIMCLL EMBL:Z70307 HSSP:Q8U4J3 PIR:T19856
RefSeq:NP_502517.1 ProteinModelPortal:Q18547 SMR:Q18547
DIP:DIP-27479N IntAct:Q18547 MINT:MINT-228120 STRING:Q18547
PaxDb:Q18547 EnsemblMetazoa:C39E9.13.1 EnsemblMetazoa:C39E9.13.2
GeneID:178259 KEGG:cel:CELE_C39E9.13 UCSC:C39E9.13 CTD:178259
WormBase:C39E9.13 InParanoid:Q18547 NextBio:900398 Uniprot:Q18547
Length = 354
Score = 214 (80.4 bits), Expect = 8.4e-22, Sum P(2) = 8.4e-22
Identities = 66/194 (34%), Positives = 101/194 (52%)
Query: 100 LELNASDDRGIQ---VIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAA 156
+E+ SD GI V++D VK AQ S + FK+V+L EADS+T AQ
Sbjct: 95 IEMTPSDV-GIYDRVVVQDLVKEMAQ--TSQIESTSQRS--FKVVVLCEADSLTRDAQHG 149
Query: 157 LRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMC 216
LRRTMEK + + L C +S II+PL SRC + + L+ + E+ES +
Sbjct: 150 LRRTMEKYANNCKIVLSCESLSRIIEPLQSRCIIINVPAPTDEDVTKVLRKVIERESFLL 209
Query: 217 DFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKVDS 276
L+ +VE S G++RRAI ++ R++ G+ E V VIP P E ++ +
Sbjct: 210 PENVLQKIVEKSEGNLRRAILMTEAL-RMENESGVA-ESV-----VIPVPEWEIYIQETA 262
Query: 277 FQVLEKYIEDLILE 290
+L+K D++L+
Sbjct: 263 RLILQKQSSDMLLK 276
Score = 101 (40.6 bits), Expect = 8.4e-22, Sum P(2) = 8.4e-22
Identities = 25/61 (40%), Positives = 33/61 (54%)
Query: 35 WVEKYRPKTI---DDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91
WV+KYRPK + D V E + LK LS +PH LF GP G GK + + +L+
Sbjct: 4 WVDKYRPKDLLGKDGVDYHIEQANHLK-FLSADCMPHLLFCGPSGAGKKTRIKCLLRELY 62
Query: 92 G 92
G
Sbjct: 63 G 63
Score = 71 (30.1 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 24/91 (26%), Positives = 47/91 (51%)
Query: 303 DIVMLASSLSDKQKALF--KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 360
D+ + + +++ L L+ +VE S G++RRAI ++ R++ G+ E V
Sbjct: 193 DVTKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAILMTEAL-RMENESGVA-ESV--- 247
Query: 361 TGVIPNPWIEKLLKVDSFQVLEKYIEDLILE 391
VIP P E ++ + +L+K D++L+
Sbjct: 248 --VIPVPEWEIYIQETARLILQKQSSDMLLK 276
>UNIPROTKB|F1P3C0 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0046683 "response
to organophosphorus" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 GO:GO:0046683
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
OMA:TRIMCLL EMBL:AADN02005263 IPI:IPI00593478 PRIDE:F1P3C0
Ensembl:ENSGALT00000027564 Uniprot:F1P3C0
Length = 356
Score = 199 (75.1 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 56/164 (34%), Positives = 88/164 (53%)
Query: 100 LELNASD--DRGIQVIRDKVKTFAQ--QTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
LE+N SD + VI++ +KT AQ Q + +D FK+V+L E D +T AQ
Sbjct: 93 LEVNPSDAGNNDRVVIQELLKTVAQSQQLETSTQRD------FKVVLLTEVDKLTKDAQH 146
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
ALRRTMEK + R L CN +S II P+ SRC R + + L +C++E +
Sbjct: 147 ALRRTMEKYMATCRLILCCNSISKIIGPIQSRCLSVRVPAPSIEDICHVLSSVCKKEGLN 206
Query: 216 CDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 259
+ + L E SG ++R+A+ +SC R++ ++D+ E+
Sbjct: 207 LPPELAQRLAEKSGRNLRKALLMCESC-RVQQYPFSADQDIPEM 249
Score = 116 (45.9 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
WV+KYRP + + +E + L+ + D PH L YGP G GK + ++ +L+G
Sbjct: 4 WVDKYRPSALSRLDFHREQAAQLRSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYG 61
Score = 52 (23.4 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 34/153 (22%), Positives = 67/153 (43%)
Query: 303 DIVMLASSLSDKQKALF--KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 360
DI + SS+ K+ + + L E SG ++R+A+ +SC R++ ++D+ E+
Sbjct: 191 DICHVLSSVCKKEGLNLPPELAQRLAEKSGRNLRKALLMCESC-RVQQYPFSADQDIPEM 249
Query: 361 TGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI 420
W E L+ + ++ + +LE +L++ + + K L+
Sbjct: 250 D------W-EIYLRETANAIVSQQSPQRLLEVRG--RLYELLTHCIPPEIIM----KGLL 296
Query: 421 LEKLAECNARLQDGASE----YIQILDLGSIVI 449
E L C+ +L+ ++ Y L LGS I
Sbjct: 297 TELLNNCDGQLKGEVAQMAAFYEHRLQLGSKAI 329
>CGD|CAL0004366 [details] [associations]
symbol:RFC5 species:5476 "Candida albicans" [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0003689
"DNA clamp loader activity" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0004366
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
eggNOG:COG0470 EMBL:AACQ01000031 SUPFAM:SSF48019 Pfam:PF08542
RefSeq:XP_719478.1 ProteinModelPortal:Q5AD38 STRING:Q5AD38
GeneID:3638890 KEGG:cal:CaO19.2029 Uniprot:Q5AD38
Length = 362
Score = 177 (67.4 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 56/170 (32%), Positives = 87/170 (51%)
Query: 100 LELNASD--DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAAL 157
LE+ SD + VI+D +K A F + FKIVI++EADS++ AQAAL
Sbjct: 93 LEITPSDMGNNDRVVIQDLLKDVASTEQVDFANQSRAKHRFKIVIINEADSLSRDAQAAL 152
Query: 158 RRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMC- 216
RRTMEK + + R L+CN +S II P+ SR R + + + L ++ E+ES+
Sbjct: 153 RRTMEKYSSNIRLILVCNSISNIIAPIKSRTLLVRIPSPSVDNINHILGHVAEKESLKFS 212
Query: 217 ---DFKA---LETLVETSGGDMRRAITCLQSCARLKGGEGI-VNEDVLEV 259
D + + ETS ++RR + ++ + E I V DV ++
Sbjct: 213 THNDSEINHFYSKIAETSNRNLRRCLLSFETISMQN--ETINVRSDVAKI 260
Score = 135 (52.6 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
WV+KYRP+T+D + + + L+ D PH L YGP G+GK + + +++FG
Sbjct: 4 WVDKYRPRTLDQLTYHDSITNSLRALAKSGDFPHLLVYGPSGSGKKTRIYCTLNEIFG 61
>ZFIN|ZDB-GENE-020809-3 [details] [associations]
symbol:rfc3 "replication factor C (activator 1) 3"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-020809-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
Pfam:PF08542 CTD:5983 HOVERGEN:HBG040509 HSSP:Q8U4J3 EMBL:BC042327
IPI:IPI00734824 RefSeq:NP_958865.1 UniGene:Dr.13362
ProteinModelPortal:Q8AW06 STRING:Q8AW06 PRIDE:Q8AW06 GeneID:259256
KEGG:dre:259256 InParanoid:Q8AW06 NextBio:20804713
ArrayExpress:Q8AW06 Bgee:Q8AW06 Uniprot:Q8AW06
Length = 356
Score = 190 (71.9 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 50/147 (34%), Positives = 78/147 (53%)
Query: 100 LELNASDDRGIQ--VIRDKVKTFAQ--QTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
LE+N SD VI++ +KT AQ Q S ++ FK+V+L E D +T AQ
Sbjct: 93 LEVNPSDAGNSDRVVIQELIKTVAQSQQIQSSAQRE------FKVVLLTEVDRLTKDAQH 146
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
ALRRTMEK + R L CN S +I P+ SRC R + + + L +C +E ++
Sbjct: 147 ALRRTMEKYMATCRLILCCNSTSKVIAPIRSRCLAVRVPLPSVEEVCSVLSGVCRKEGLL 206
Query: 216 CDFKALETLVETSGGDMRRAITCLQSC 242
+ + + E SG ++R+A+ ++C
Sbjct: 207 LPPELAKQIAEKSGRNLRKALLMCEAC 233
Score = 119 (46.9 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
WV+KYRP ++ + +E + LK + D PH L YGP G GK + ++ +L+G
Sbjct: 4 WVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYG 61
Score = 48 (22.0 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 30/153 (19%), Positives = 67/153 (43%)
Query: 303 DIVMLASSLSDKQKALF--KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 360
++ + S + K+ L + + + E SG ++R+A+ ++C R++ ++D+ E
Sbjct: 191 EVCSVLSGVCRKEGLLLPPELAKQIAEKSGRNLRKALLMCEAC-RVQQYPFSPDQDIPET 249
Query: 361 TGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI 420
W E L+ + ++ + +LE + + ++++ S K L+
Sbjct: 250 D------W-EVYLRETANAIVSQQSPQRLLEVRA------RLYELLTHCISPEVIMKGLV 296
Query: 421 LEKLAECNARLQ----DGASEYIQILDLGSIVI 449
E L+ C+ L+ A+ Y L LG+ I
Sbjct: 297 TELLSNCDGHLKAEVAQMAAYYEHRLQLGNKAI 329
>RGD|1306832 [details] [associations]
symbol:Rfc3 "replication factor C (activator 1) 3" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA;ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005663 "DNA replication factor C complex"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA;ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0016887 "ATPase activity"
evidence=IEA;ISO] [GO:0046683 "response to organophosphorus"
evidence=IEA;ISO] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 RGD:1306832 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756 GO:GO:0046683
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:BC088281
EMBL:CH474108 IPI:IPI00189913 RefSeq:NP_001009629.1 UniGene:Rn.3711
STRING:Q5M830 Ensembl:ENSRNOT00000001444 GeneID:288414
KEGG:rno:288414 UCSC:RGD:1306832 InParanoid:Q5M830 NextBio:628070
Genevestigator:Q5M830 Uniprot:Q5M830
Length = 356
Score = 191 (72.3 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 51/147 (34%), Positives = 76/147 (51%)
Query: 100 LELNASDDRGIQ--VIRDKVKTFAQ--QTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
LE+N SD VI++ +KT AQ Q + +D FK+V+L E D +T AQ
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRD------FKVVLLTEVDKLTKDAQH 146
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
ALRRTMEK + R L CN S +I P+ SRC R + + + L +C++E +
Sbjct: 147 ALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIEDICSVLSTVCKKEGLA 206
Query: 216 CDFKALETLVETSGGDMRRAITCLQSC 242
K L E S ++R+A+ ++C
Sbjct: 207 LPSKLARRLAEKSCRNLRKALLMCEAC 233
Score = 116 (45.9 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
WV+KYRP ++ + +E + L+ + D PH L YGP G GK + ++ +L+G
Sbjct: 4 WVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
Score = 39 (18.8 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 303 DIVMLASSLSDKQK-AL-FKALETLVETSGGDMRRAITCLQSC 343
DI + S++ K+ AL K L E S ++R+A+ ++C
Sbjct: 191 DICSVLSTVCKKEGLALPSKLARRLAEKSCRNLRKALLMCEAC 233
>GENEDB_PFALCIPARUM|PF11_0117 [details] [associations]
symbol:PF11_0117 "replication factor C subunit
5, putative" species:5833 "Plasmodium falciparum" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] KO:K10756 EMBL:AE014186
GO:GO:0006271 GO:GO:0005663 RefSeq:XP_001347790.1
ProteinModelPortal:Q8IIQ1 EnsemblProtists:PF11_0117:mRNA
GeneID:810666 KEGG:pfa:PF11_0117 EuPathDB:PlasmoDB:PF3D7_1111100
HOGENOM:HOG000282249 OMA:CIMALEM ProtClustDB:CLSZ2432864
Uniprot:Q8IIQ1
Length = 349
Score = 174 (66.3 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 47/143 (32%), Positives = 79/143 (55%)
Query: 101 ELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRT 160
EL D +Q I ++ ++ + +AS F++ P ++I + +A+ ++ AQA LRRT
Sbjct: 94 ELGNKDKIIVQSIIKELCSY-KSSASFFSKT----PMYRIFVFKDAEFLSEGAQAGLRRT 148
Query: 161 MEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKA 220
+E ++ R L ++S II+PL SRC R +E + + LQ IC+QE+V F
Sbjct: 149 LETYIRNARVILHLEHLSKIIEPLKSRCICIRVPLPSEEEIYSVLQNICKQENVSPSFST 208
Query: 221 LE---TLVETSGGDMRRAITCLQ 240
E TL+ T G ++R+ I L+
Sbjct: 209 YEYFQTLINTHGRNLRKCIMALE 231
Score = 133 (51.9 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 27/82 (32%), Positives = 46/82 (56%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD- 93
W+EKY P++ID++ +++ L+K DLPH +FYG PG GK++ + ++F D
Sbjct: 2 WLEKYSPQSIDELTIHKDITERLRKLSRHKDLPHIIFYGAPGGGKSTRINCLIKEIFKDE 61
Query: 94 -MYRERILELNASDDRGIQVIR 114
+ R NA + I V++
Sbjct: 62 KIIRRPECITNAENKININVVQ 83
Score = 43 (20.2 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 319 FKALETLVETSGGDMRRAITCLQ 341
++ +TL+ T G ++R+ I L+
Sbjct: 209 YEYFQTLINTHGRNLRKCIMALE 231
>UNIPROTKB|Q8IIQ1 [details] [associations]
symbol:PF11_0117 "Replication factor C subunit 5, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISS] KO:K10756 EMBL:AE014186
GO:GO:0006271 GO:GO:0005663 RefSeq:XP_001347790.1
ProteinModelPortal:Q8IIQ1 EnsemblProtists:PF11_0117:mRNA
GeneID:810666 KEGG:pfa:PF11_0117 EuPathDB:PlasmoDB:PF3D7_1111100
HOGENOM:HOG000282249 OMA:CIMALEM ProtClustDB:CLSZ2432864
Uniprot:Q8IIQ1
Length = 349
Score = 174 (66.3 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 47/143 (32%), Positives = 79/143 (55%)
Query: 101 ELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRT 160
EL D +Q I ++ ++ + +AS F++ P ++I + +A+ ++ AQA LRRT
Sbjct: 94 ELGNKDKIIVQSIIKELCSY-KSSASFFSKT----PMYRIFVFKDAEFLSEGAQAGLRRT 148
Query: 161 MEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKA 220
+E ++ R L ++S II+PL SRC R +E + + LQ IC+QE+V F
Sbjct: 149 LETYIRNARVILHLEHLSKIIEPLKSRCICIRVPLPSEEEIYSVLQNICKQENVSPSFST 208
Query: 221 LE---TLVETSGGDMRRAITCLQ 240
E TL+ T G ++R+ I L+
Sbjct: 209 YEYFQTLINTHGRNLRKCIMALE 231
Score = 133 (51.9 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 27/82 (32%), Positives = 46/82 (56%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD- 93
W+EKY P++ID++ +++ L+K DLPH +FYG PG GK++ + ++F D
Sbjct: 2 WLEKYSPQSIDELTIHKDITERLRKLSRHKDLPHIIFYGAPGGGKSTRINCLIKEIFKDE 61
Query: 94 -MYRERILELNASDDRGIQVIR 114
+ R NA + I V++
Sbjct: 62 KIIRRPECITNAENKININVVQ 83
Score = 43 (20.2 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 319 FKALETLVETSGGDMRRAITCLQ 341
++ +TL+ T G ++R+ I L+
Sbjct: 209 YEYFQTLINTHGRNLRKCIMALE 231
>UNIPROTKB|G4NAB7 [details] [associations]
symbol:MGG_03202 "Replication factor C subunit 5"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
KO:K10756 GO:GO:0017111 EMBL:CM001234 SUPFAM:SSF48019 Pfam:PF08542
RefSeq:XP_003716781.1 ProteinModelPortal:G4NAB7
EnsemblFungi:MGG_03202T0 GeneID:2676506 KEGG:mgr:MGG_03202
Uniprot:G4NAB7
Length = 352
Score = 183 (69.5 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 63/204 (30%), Positives = 103/204 (50%)
Query: 100 LELNASDDRGIQ--VIRDKVKTFAQ--QTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
LE+ SD VI+D +K AQ Q G Q FK+V+++EAD ++ AQA
Sbjct: 93 LEITPSDVGNYDRVVIQDLLKEVAQTQQVDQGARQR------FKVVVINEADHLSRDAQA 146
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
ALRRTMEK + + R L+ N + II P+ SR R +E+ + T L ++E
Sbjct: 147 ALRRTMEKYSPNLRLILLANSTANIIAPIRSRTLLVRVAAPSEDEICTVLAASAKKEGWT 206
Query: 216 CDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKVD 275
+ E + + SG ++RRA+ L++ NE V + T + P W E L+
Sbjct: 207 VSTQLHERIAKESGRNLRRALLMLETVHAQ-------NEKVEDNTPIPPPDW-EALIGQI 258
Query: 276 SFQVLEKYIEDLILEAYSATQLFD 299
+ +++E++ IL+ + +L+D
Sbjct: 259 AKEIMEEHTPARILQVRA--KLYD 280
Score = 122 (48.0 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
V+K+RP+++D + +E+ L+ D PH L YGP G GK + ++A +L+G
Sbjct: 5 VDKHRPRSLDSLTYHEELSERLRSLAQSGDFPHLLIYGPSGAGKKTRIVATLKELYG 61
Score = 54 (24.1 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 23/96 (23%), Positives = 47/96 (48%)
Query: 305 VMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 364
V+ AS+ + + E + + SG ++RRA+ L++ NE V + T +
Sbjct: 195 VLAASAKKEGWTVSTQLHERIAKESGRNLRRALLMLETVHAQ-------NEKVEDNTPIP 247
Query: 365 PNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFD 400
P W E L+ + +++E++ IL+ + +L+D
Sbjct: 248 PPDW-EALIGQIAKEIMEEHTPARILQVRA--KLYD 280
Score = 37 (18.1 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 401 QFHDIVMSASSLSDKQKALILEKLAECNARLQD 433
Q H+ + S + ++ L+LE + N +++D
Sbjct: 210 QLHERIAKESGRNLRRALLMLETVHAQNEKVED 242
>UNIPROTKB|F1RSR4 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046683 "response to organophosphorus" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 GO:GO:0046683
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
OMA:TRIMCLL EMBL:AEMK01181220 EMBL:CU076062
Ensembl:ENSSSCT00000010246 Uniprot:F1RSR4
Length = 356
Score = 187 (70.9 bits), Expect = 6.0e-20, Sum P(2) = 6.0e-20
Identities = 52/161 (32%), Positives = 81/161 (50%)
Query: 100 LELNASDDRGIQ--VIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAAL 157
LE+N SD VI++ +KT AQ N FK+V+L E D +T AQ AL
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQ----KDFKVVLLTEVDKLTKDAQHAL 148
Query: 158 RRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCD 217
RRTMEK + R L CN S +I P+ SRC R + + L +C++E +
Sbjct: 149 RRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLSLP 208
Query: 218 FKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 258
+ L E S ++R+A+ ++C R++ V++++ E
Sbjct: 209 SQLARKLAEKSCRNLRKALLMCEAC-RVQQYPFTVDQEIPE 248
Score = 116 (45.9 bits), Expect = 6.0e-20, Sum P(2) = 6.0e-20
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
WV+KYRP ++ + +E + L+ + D PH L YGP G GK + ++ +L+G
Sbjct: 4 WVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
>MGI|MGI:1916513 [details] [associations]
symbol:Rfc3 "replication factor C (activator 1) 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006260 "DNA
replication" evidence=ISO] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 MGI:MGI:1916513 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756
GO:GO:0046683 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:BC026795
IPI:IPI00665571 RefSeq:NP_081285.1 UniGene:Mm.12553
ProteinModelPortal:Q8R323 SMR:Q8R323 IntAct:Q8R323 STRING:Q8R323
PhosphoSite:Q8R323 PaxDb:Q8R323 PRIDE:Q8R323
Ensembl:ENSMUST00000038131 GeneID:69263 KEGG:mmu:69263
InParanoid:Q8R323 NextBio:328993 Bgee:Q8R323 CleanEx:MM_RFC3
Genevestigator:Q8R323 GermOnline:ENSMUSG00000033970 Uniprot:Q8R323
Length = 356
Score = 183 (69.5 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 50/147 (34%), Positives = 74/147 (50%)
Query: 100 LELNASDDRGIQ--VIRDKVKTFAQ--QTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
LE+N SD VI++ +KT AQ Q + +D FK+V+L E D +T AQ
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRD------FKVVLLTEVDKLTKDAQH 146
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
ALRRTMEK + R L CN S +I P+ SRC R + + + L +C +E +
Sbjct: 147 ALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICSVLSTVCRKEGLA 206
Query: 216 CDFKALETLVETSGGDMRRAITCLQSC 242
L E S ++R+A+ ++C
Sbjct: 207 LPSTLARRLAEKSCRNLRKALLMCEAC 233
Score = 116 (45.9 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
WV+KYRP ++ + +E + L+ + D PH L YGP G GK + ++ +L+G
Sbjct: 4 WVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
>UNIPROTKB|E2R7L0 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046683 "response to organophosphorus"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0016887 KO:K10756 GO:GO:0046683 SUPFAM:SSF48019 Pfam:PF08542
CTD:5983 GeneTree:ENSGT00550000075006 OMA:TRIMCLL EMBL:AAEX03014212
RefSeq:XP_534500.3 ProteinModelPortal:E2R7L0
Ensembl:ENSCAFT00000010156 GeneID:477308 KEGG:cfa:477308
NextBio:20852824 Uniprot:E2R7L0
Length = 356
Score = 183 (69.5 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 49/145 (33%), Positives = 72/145 (49%)
Query: 100 LELNASDDRGIQ--VIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAAL 157
LE+N SD VI++ +KT AQ N FK+V+L E D +T AQ AL
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRD----FKVVLLTEVDKLTKDAQHAL 148
Query: 158 RRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCD 217
RRTMEK + R L CN S +I P+ SRC R + + L +C++E +
Sbjct: 149 RRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLP 208
Query: 218 FKALETLVETSGGDMRRAITCLQSC 242
+ L E S ++R+A+ ++C
Sbjct: 209 SQLAHRLAEKSCRNLRKALLMCEAC 233
Score = 114 (45.2 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
WV+KYRP ++ + +E + L+ + D PH L YGP G GK + ++ +L+G
Sbjct: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
>UNIPROTKB|P40938 [details] [associations]
symbol:RFC3 "Replication factor C subunit 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IDA;TAS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006260 "DNA replication"
evidence=IDA;TAS] [GO:0003689 "DNA clamp loader activity"
evidence=TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0046683 "response to organophosphorus" evidence=IEP]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic
cell cycle" evidence=TAS] [GO:0000722 "telomere maintenance via
recombination" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271
"DNA strand elongation involved in DNA replication" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0006200 "ATP catabolic process"
evidence=IDA] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 EMBL:CH471075 KO:K10756 GO:GO:0017111 GO:GO:0046683
GO:GO:0000084 eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722
GO:GO:0000731 Reactome:REACT_383 GO:GO:0006283 GO:GO:0003689
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5983 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:L07541
EMBL:AF484446 EMBL:AL139081 EMBL:AL160394 EMBL:AL161891
EMBL:BC000149 EMBL:CX786577 IPI:IPI00031521 IPI:IPI00373882
PIR:T09573 RefSeq:NP_002906.1 RefSeq:NP_853536.2 UniGene:Hs.115474
ProteinModelPortal:P40938 SMR:P40938 DIP:DIP-36432N IntAct:P40938
MINT:MINT-3015032 STRING:P40938 PhosphoSite:P40938 DMDM:3915601
PaxDb:P40938 PeptideAtlas:P40938 PRIDE:P40938 DNASU:5983
Ensembl:ENST00000380071 Ensembl:ENST00000434425 GeneID:5983
KEGG:hsa:5983 UCSC:uc001uuz.3 GeneCards:GC13P034392 HGNC:HGNC:9971
HPA:HPA030149 MIM:600405 neXtProt:NX_P40938 PharmGKB:PA34340
InParanoid:P40938 PhylomeDB:P40938 ChiTaRS:RFC3 GenomeRNAi:5983
NextBio:23291 ArrayExpress:P40938 Bgee:P40938 CleanEx:HS_RFC3
Genevestigator:P40938 GermOnline:ENSG00000133119 Uniprot:P40938
Length = 356
Score = 183 (69.5 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 49/145 (33%), Positives = 72/145 (49%)
Query: 100 LELNASDDRGIQ--VIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAAL 157
LE+N SD VI++ +KT AQ N FK+V+L E D +T AQ AL
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRD----FKVVLLTEVDKLTKDAQHAL 148
Query: 158 RRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCD 217
RRTMEK + R L CN S +I P+ SRC R + + L +C++E +
Sbjct: 149 RRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLP 208
Query: 218 FKALETLVETSGGDMRRAITCLQSC 242
+ L E S ++R+A+ ++C
Sbjct: 209 SQLAHRLAEKSCRNLRKALLMCEAC 233
Score = 114 (45.2 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
WV+KYRP ++ + +E + L+ + D PH L YGP G GK + ++ +L+G
Sbjct: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
>UNIPROTKB|Q2TBV1 [details] [associations]
symbol:RFC3 "Replication factor C subunit 3" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0046683
"response to organophosphorus" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756 GO:GO:0046683
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 EMBL:BC109606
IPI:IPI00713322 RefSeq:NP_001033636.1 UniGene:Bt.16980
ProteinModelPortal:Q2TBV1 STRING:Q2TBV1 PRIDE:Q2TBV1
Ensembl:ENSBTAT00000014278 GeneID:515602 KEGG:bta:515602 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 InParanoid:Q2TBV1 OMA:TRIMCLL OrthoDB:EOG4T4CVP
NextBio:20871915 Uniprot:Q2TBV1
Length = 356
Score = 180 (68.4 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
Identities = 50/147 (34%), Positives = 75/147 (51%)
Query: 100 LELNASDDRGIQ--VIRDKVKTFAQ--QTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
LE+N SD VI++ +KT AQ Q + +D FK+V+L E D +T AQ
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQKD------FKVVLLTEVDKLTKDAQH 146
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
ALRRTMEK + R L CN S +I P+ SRC R + + L +C++E +
Sbjct: 147 ALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLN 206
Query: 216 CDFKALETLVETSGGDMRRAITCLQSC 242
+ L E S ++R+A+ ++C
Sbjct: 207 LPPQLAHRLAEKSCRNLRKALLMCEAC 233
Score = 116 (45.9 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
WV+KYRP ++ + +E + L+ + D PH L YGP G GK + ++ +L+G
Sbjct: 4 WVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
>FB|FBgn0028700 [details] [associations]
symbol:RfC38 "Replication factor C 38kD subunit" species:7227
"Drosophila melanogaster" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0003689 "DNA clamp loader activity" evidence=ISS]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0022008
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 EMBL:AF160912 UniGene:Dm.19818
ProteinModelPortal:Q7KLW6 IntAct:Q7KLW6 STRING:Q7KLW6 PaxDb:Q7KLW6
PRIDE:Q7KLW6 FlyBase:FBgn0028700 InParanoid:Q7KLW6
OrthoDB:EOG4C2FS4 ArrayExpress:Q7KLW6 Bgee:Q7KLW6 Uniprot:Q7KLW6
Length = 395
Score = 172 (65.6 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 63/232 (27%), Positives = 110/232 (47%)
Query: 100 LELNASD----DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
LE+N SD DR V+ D +K AQ G+ FK++++ E D +T AQ
Sbjct: 132 LEVNPSDAGMYDR--TVVIDLIKQVAQ--THQIEISGQR--EFKVIVISEGDELTKDAQH 185
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
ALRRTMEK + R + N S II + SRC R E +++ LQ C++E +
Sbjct: 186 ALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQNTCKREGLA 245
Query: 216 CDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG-VIPKPWIEKLLKV 274
+ + +V+ S ++RRA+ L++ A++ N+++ ++ V + +++
Sbjct: 246 LPVELAKRVVDKSERNLRRALLMLEA-AKVAKAPFTANQEIPDLDWQVFLRETASQIISE 304
Query: 275 DSFQVLEKYIE---DLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALE 323
+ LEK E +L+ + +F + ++ +S K K L A E
Sbjct: 305 QTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQLVNNCDMSIKAKTLEFATE 356
Score = 123 (48.4 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 22/87 (25%), Positives = 44/87 (50%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N+ WV+KYRP+ + + ++ L+ +D PH +FYGP G GK + ++ +
Sbjct: 38 NEMALWVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLRE 97
Query: 90 LFG---DMYRERILELNASDDRGIQVI 113
++G + R + +R ++V+
Sbjct: 98 MYGSGVERLRSETMTFTTPSNRKVEVM 124
Score = 51 (23.0 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 25/121 (20%), Positives = 54/121 (44%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG-VIPNPWIEKLLKVDSFQVLEK 383
+V+ S ++RRA+ L++ A++ N+++ ++ V +++ + LEK
Sbjct: 254 VVDKSERNLRRALLMLEA-AKVAKAPFTANQEIPDLDWQVFLRETASQIISEQTPAKLEK 312
Query: 384 YIE---DLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQ 440
E +L+ + +F + +++ +S K K L E E R+Q GA
Sbjct: 313 IRERLYELLTQGVPPNLIFRGLVEQLVNNCDMSIKAKTL--EFATEYEHRMQSGAKHIFH 370
Query: 441 I 441
+
Sbjct: 371 L 371
>UNIPROTKB|H7C1P0 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR008921
InterPro:IPR013748 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF48019
EMBL:AC112907 Pfam:PF08542 HGNC:HGNC:9972 ChiTaRS:RFC4
Ensembl:ENST00000417876 Bgee:H7C1P0 Uniprot:H7C1P0
Length = 111
Score = 223 (83.6 bits), Expect = 7.2e-18, P = 7.2e-18
Identities = 51/108 (47%), Positives = 72/108 (66%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVL 381
LV+ S GD+R+AIT LQS RL GG+ I + + ++ GVIP I+ + SF L
Sbjct: 5 LVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKL 64
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 429
E ++DLI E ++ATQL +Q HD+V+ ++LSDKQK++I EKLA NA
Sbjct: 65 EAVVKDLIDEGHAATQLVNQLHDVVVE-NNLSDKQKSIITEKLALTNA 111
Score = 196 (74.1 bits), Expect = 6.7e-15, P = 6.7e-15
Identities = 44/98 (44%), Positives = 65/98 (66%)
Query: 224 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVL 280
LV+ S GD+R+AIT LQS RL GG+ I + + ++ GVIP I+ + SF L
Sbjct: 5 LVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKL 64
Query: 281 EKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKAL 318
E ++DLI E ++ATQL +Q HD+V+ ++LSDKQK++
Sbjct: 65 EAVVKDLIDEGHAATQLVNQLHDVVV-ENNLSDKQKSI 101
>TIGR_CMR|CHY_2675 [details] [associations]
symbol:CHY_2675 "putative DNA polymerase III, gamma/tau
subunits" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006260 "DNA replication" evidence=ISS] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_361464.1 ProteinModelPortal:Q3A8S0
STRING:Q3A8S0 GeneID:3728788 KEGG:chy:CHY_2675 PATRIC:21278371
OMA:DICHAIN BioCyc:CHYD246194:GJCN-2674-MONOMER Uniprot:Q3A8S0
Length = 511
Score = 243 (90.6 bits), Expect = 8.0e-18, P = 8.0e-18
Identities = 74/259 (28%), Positives = 130/259 (50%)
Query: 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTST--MIAA---C-HQL 90
K+RPKT +++ Q+ +V +LK ++ + H +LF GP GTGKT+T ++A C H +
Sbjct: 8 KWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAKAVNCEHPV 67
Query: 91 FGDMYRE-------------RILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
G+ + + E++A+ +RGI IR+ ++ A G
Sbjct: 68 EGEPCNQCPSCIGINNQSLLNVFEIDAASNRGIDEIRELRESIKLVPAQG---------K 118
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
+K+ I+DE +T+ A AL +T+E+ + F L + + + SRC +F FK ++
Sbjct: 119 YKVYIIDEVHMLTNEAFNALLKTLEEPPEHVIFILATTEFNKVPVTIVSRCQRFDFKRIS 178
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
T+ L+ I E+E + + +AL + E S G +R A++ + L I ED L
Sbjct: 179 TKTIWEHLKNIAEKEKLQYEAEALHLIAEASEGGLRDALSLMDQI--LVFNPKITVEDTL 236
Query: 258 EVTGVIPKPWIEKLLKVDS 276
+V G + W K+L++ S
Sbjct: 237 KVLGFVS--W-RKILELIS 252
>DICTYBASE|DDB_G0293702 [details] [associations]
symbol:rfc3 "replication factor C subunit 3"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0293702 GO:GO:0005634
GenomeReviews:CM000155_GR GO:GO:0000166 GO:GO:0003677 GO:GO:0006298
KO:K10756 GO:GO:0017111 EMBL:AAFI02000218 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 OMA:TRIMCLL RefSeq:XP_628996.1
HSSP:P38251 ProteinModelPortal:Q54BN3 STRING:Q54BN3 PRIDE:Q54BN3
EnsemblProtists:DDB0232232 GeneID:8629280 KEGG:ddi:DDB_G0293702
ProtClustDB:CLSZ2429230 Uniprot:Q54BN3
Length = 347
Score = 156 (60.0 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 40/125 (32%), Positives = 61/125 (48%)
Query: 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
++T ++ A D FKIVIL+E D ++ AQ ALRRTMEK R L C+
Sbjct: 108 IQTIIKEIAQSPPIDSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDS 167
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
+ +I P+ SRC R ++ + L + E K + + SGG++R A+
Sbjct: 168 TAKVIDPIKSRCLGIRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYAL 227
Query: 237 TCLQS 241
L+S
Sbjct: 228 MLLES 232
Score = 126 (49.4 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
W++KY+P ++D + ++ LK + D PH L YGP G GK + ++A +++G
Sbjct: 3 WIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYG 60
Score = 38 (18.4 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 320 KALETLVETSGGDMRRAITCLQS 342
K + + SGG++R A+ L+S
Sbjct: 210 KLAVNVAKQSGGNLRYALMLLES 232
>ASPGD|ASPL0000001589 [details] [associations]
symbol:AN6300 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AACD01000107 EMBL:BN001301 KO:K10756 GO:GO:0017111
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224153
OMA:TRIMCLL OrthoDB:EOG4R273P RefSeq:XP_663904.1
ProteinModelPortal:Q5AZI0 STRING:Q5AZI0
EnsemblFungi:CADANIAT00006689 GeneID:2870977 KEGG:ani:AN6300.2
Uniprot:Q5AZI0
Length = 352
Score = 161 (61.7 bits), Expect = 4.4e-17, Sum P(2) = 4.4e-17
Identities = 59/204 (28%), Positives = 101/204 (49%)
Query: 100 LELNASD----DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
LE+ SD DR V+++ +K AQ + + FK+V+++EAD +T AQA
Sbjct: 93 LEITPSDVGTYDR--VVVQELLKEIAQTQQVDLSAKQR----FKVVVINEADHLTRDAQA 146
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
ALRRTMEK + + R L+ N S II P+ SR R +E + T L ++E
Sbjct: 147 ALRRTMEKYSPNMRLILLANSTSNIIAPIRSRTLLVRVAAPSEEDICTILSTSAKREGWN 206
Query: 216 CDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKVD 275
+ + + + SG ++RRA+ ++ +E V + T + P W E L+ V
Sbjct: 207 EAPELNKRIAKESGRNLRRALLMFEAIYAQ-------SEKVSDDTPIPPPDW-EALISVI 258
Query: 276 SFQVLEKYIEDLILEAYSATQLFD 299
+ ++L + +L+ + +L+D
Sbjct: 259 AEEILAERSPARLLQVRA--RLYD 280
Score = 118 (46.6 bits), Expect = 4.4e-17, Sum P(2) = 4.4e-17
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
V+K+RP+++D + E+ + L+ D PH L YGP G GK + IA +L+G
Sbjct: 5 VDKHRPRSLDTLSYHHELSARLRSLAQSGDFPHLLMYGPSGAGKKTRTIATLKELYG 61
>UNIPROTKB|H7C5P4 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR008921
InterPro:IPR013748 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF48019
EMBL:AC005081 Pfam:PF08542 HGNC:HGNC:9970 ChiTaRS:RFC2
ProteinModelPortal:H7C5P4 Ensembl:ENST00000497430 Uniprot:H7C5P4
Length = 198
Score = 212 (79.7 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 53/123 (43%), Positives = 72/123 (58%)
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRRTME +K+TRF L CN II+P+ SRC+ R+ L + +LTRL +
Sbjct: 2 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNV 61
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPKPW 267
E+E V LE ++ T+ GDMR+A+ LQS G G +N E+V +V P P
Sbjct: 62 IEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTF---SGFGFINSENVFKVCDE-PHPL 117
Query: 268 IEK 270
+ K
Sbjct: 118 LVK 120
>POMBASE|SPBC83.14c [details] [associations]
symbol:rfc5 "DNA replication factor C complex subunit
Rfc5 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] InterPro:IPR008921 InterPro:IPR013748
PomBase:SPBC83.14c GO:GO:0005829 EMBL:CU329671 GO:GO:0006281
GenomeReviews:CU329671_GR GO:GO:0000790 GO:GO:0043596 KO:K10756
eggNOG:COG0470 GO:GO:0003689 GO:GO:0031390 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 HOGENOM:HOG000224153 OMA:TRIMCLL PIR:T40703
RefSeq:NP_595646.1 ProteinModelPortal:O94697 STRING:O94697
EnsemblFungi:SPBC83.14c.1 GeneID:2540215 KEGG:spo:SPBC83.14c
OrthoDB:EOG4R273P NextBio:20801347 Uniprot:O94697
Length = 358
Score = 154 (59.3 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 43/132 (32%), Positives = 66/132 (50%)
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK-PL 196
FK+V+++ AD +T AQAALRRTMEK + + R LI N S II+P+ SR R P
Sbjct: 128 FKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMVRVAAPT 187
Query: 197 AENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDV 256
E +L + + Q D L + ++R+AI L++ G N+ +
Sbjct: 188 PEEIILVMSKILTAQGLEAPD-SLLNNIANNCDRNLRKAILLLETVHAKSPG----NKQL 242
Query: 257 LEVTGVIPKP-W 267
++ +P P W
Sbjct: 243 IDTGAQLPLPDW 254
Score = 113 (44.8 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
W+++YRPKT+ + +++ L S + PH L YGP G GK + ++A +L+G
Sbjct: 3 WLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYG 60
>TIGR_CMR|DET_0585 [details] [associations]
symbol:DET_0585 "DNA polymerase III, gamma and tau
subunits, putative" species:243164 "Dehalococcoides ethenogenes
195" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0009360 "DNA polymerase III complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_181327.1 ProteinModelPortal:Q3Z8X2 STRING:Q3Z8X2
GeneID:3230093 KEGG:det:DET0585 PATRIC:21608239 OMA:ISGDERI
ProtClustDB:PRK14950 BioCyc:DETH243164:GJNF-586-MONOMER
Uniprot:Q3Z8X2
Length = 559
Score = 225 (84.3 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 86/309 (27%), Positives = 140/309 (45%)
Query: 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTST-MIAA----C--HQ 89
K+RP+T+ D++ Q+ V LK LS + +LF GP GTGKTST I A C +Q
Sbjct: 9 KWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQ 68
Query: 90 LFGDMYRERILELNASDDRGIQVIR-DKVKTFAQQTASGFNQDGKPCPP---FKIVILDE 145
G+ + L+ ++ + VI D + + P +K+ I+DE
Sbjct: 69 GKGEPCNTCPMCLSITEGSSMDVIEIDAASNTGVDDIRELKEKVQYAPALANYKVYIIDE 128
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
++++A AL +T+E+ F L + ++ + SRC +F F ++ + M +L
Sbjct: 129 VHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLSDMSRKL 188
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP- 264
+ I + E + + +AL+ + ++GG R LQ A G E I V G+
Sbjct: 189 EKISQAEGINIEPEALKLIARSAGGSFRDGENLLQQIATTYGTE-ISLPQVQAALGISGD 247
Query: 265 ---KPWIEKLLKVD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVMLAS----SL--- 311
K E +LK D Q L + D I +L D I++L S SL
Sbjct: 248 ERIKTLAENILKKDIKNGLQTLNAVVADGIDLKQFRRELLDYLRQIMLLNSGAEGSLELT 307
Query: 312 SDKQKALFK 320
+D++KAL K
Sbjct: 308 ADEKKALQK 316
>UNIPROTKB|P09122 [details] [associations]
symbol:dnaX "DNA polymerase III subunit gamma/tau"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AL009126
GenomeReviews:AL009126_GR GO:GO:0017111 GO:GO:0003887 EMBL:D26185
GO:GO:0009360 EMBL:X17014 EMBL:X06803 EMBL:X52144 PIR:I40469
PIR:S13786 RefSeq:NP_387900.2 ProteinModelPortal:P09122 SMR:P09122
IntAct:P09122 EnsemblBacteria:EBBACT00000003868 GeneID:936899
KEGG:bsu:BSU00190 PATRIC:18971499 GenoList:BSU00190 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563
BioCyc:BSUB:BSU00190-MONOMER SUPFAM:SSF48019 TIGRFAMs:TIGR02397
Uniprot:P09122
Length = 563
Score = 211 (79.3 bits), Expect = 4.2e-14, P = 4.2e-14
Identities = 71/259 (27%), Positives = 118/259 (45%)
Query: 39 YRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTM-------------- 83
+RP+ +DV+ Q+ + L+ L H +LF GP GTGKTS
Sbjct: 10 FRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNCEHAPV 69
Query: 84 ------IAACHQLFGDMYRERILELNASDDRG---IQVIRDKVKTFAQQTASGFNQDGKP 134
AAC + + ++E++A+ + G I+ IRDKVK FA +
Sbjct: 70 DEPCNECAACKGITNGSISD-VIEIDAASNNGVDEIRDIRDKVK-FAPSAVT-------- 119
Query: 135 CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
+K+ I+DE ++ A AL +T+E+ + F L I + SRC +F FK
Sbjct: 120 ---YKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFK 176
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 254
+ ++ R+ I + E + + +LE + + G MR A++ L G + + E
Sbjct: 177 RITSQAIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSG-DILKVE 235
Query: 255 DVLEVTGVIPKPWIEKLLK 273
D L +TG + + +I KL K
Sbjct: 236 DALLITGAVSQLYIGKLAK 254
>UNIPROTKB|Q97RF7 [details] [associations]
symbol:dnaX "DNA polymerase III, gamma and tau subunits"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE005672
GenomeReviews:AE005672_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 OMA:QTSHAYL PIR:G95099
RefSeq:NP_345352.1 ProteinModelPortal:Q97RF7
EnsemblBacteria:EBSTRT00000026555 GeneID:930817 KEGG:spn:SP_0865
PATRIC:19706123 Uniprot:Q97RF7
Length = 551
Score = 208 (78.3 bits), Expect = 8.7e-14, P = 8.7e-14
Identities = 76/275 (27%), Positives = 128/275 (46%)
Query: 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTM-IAA----C-HQL 90
KYR + ++ Q+ V LK+ + + H +LF GP GTGKTS I A C +Q+
Sbjct: 8 KYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCPNQV 67
Query: 91 FGD----MY---------RERILELNASDDRG---IQVIRDKVKTFAQQTASGFNQDGKP 134
G+ Y E ++E++A+ + G I+ IRDK T+A A
Sbjct: 68 GGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDK-STYAPSLAR-------- 118
Query: 135 CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
+K+ I+DE ++ A AL +T+E+ T++ F L + I + SR +F FK
Sbjct: 119 ---YKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFK 175
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 254
+ + + YI E+E++ + +A+E + + G MR A++ L L G +
Sbjct: 176 SIKTQDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTA 235
Query: 255 DVLEVTGVIPKPWIEKLLKVDSFQVLEKYIEDLIL 289
E+TG I ++ + S Q + K + L L
Sbjct: 236 ISEEITGTISLSALDDYVAALSQQDVPKALSCLNL 270
>TIGR_CMR|BA_0019 [details] [associations]
symbol:BA_0019 "DNA polymerase III, gamma and tau subunits"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 RefSeq:NP_842590.1
RefSeq:YP_016623.1 RefSeq:YP_026309.1 ProteinModelPortal:Q81W18
IntAct:Q81W18 DNASU:1089003 EnsemblBacteria:EBBACT00000011079
EnsemblBacteria:EBBACT00000018474 EnsemblBacteria:EBBACT00000022003
GeneID:1089003 GeneID:2819477 GeneID:2849405 KEGG:ban:BA_0019
KEGG:bar:GBAA_0019 KEGG:bat:BAS0021 OMA:QTSHAYL
BioCyc:BANT260799:GJAJ-24-MONOMER BioCyc:BANT261594:GJ7F-25-MONOMER
Uniprot:Q81W18
Length = 562
Score = 207 (77.9 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 66/255 (25%), Positives = 117/255 (45%)
Query: 39 YRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTS-TMIAA----C-HQLF 91
+RP+ +DV+ Q+ V L+ L + H +LF GP GTGKT+ + A C H
Sbjct: 10 WRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPV 69
Query: 92 GDMYRE-------------RILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPF 138
+ E +LE++A+ + G+ IRD ++ + S +
Sbjct: 70 AEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRD-IRDKVKYAPSAVE--------Y 120
Query: 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAE 198
K+ I+DE ++ A AL +T+E+ F L I + SRC +F F+ ++
Sbjct: 121 KVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISV 180
Query: 199 NTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 258
N ++ RL + E + +AL+ + + G MR A++ + E + EDVL
Sbjct: 181 NDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSD-ERVTTEDVLA 239
Query: 259 VTGVIPKPWIEKLLK 273
VTG + + ++ L++
Sbjct: 240 VTGSVSQQYLGNLVE 254
>TIGR_CMR|CJE_1293 [details] [associations]
symbol:CJE_1293 "DNA polymerase III, gamma/tau subunits"
species:195099 "Campylobacter jejuni RM1221" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR012763
SMART:SM00382 GO:GO:0005524 GO:GO:0006260 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 TIGRFAMs:TIGR02397
RefSeq:YP_179281.1 ProteinModelPortal:Q5HTV4 STRING:Q5HTV4
GeneID:3231800 KEGG:cjr:CJE1293 PATRIC:20044382 OMA:EMMLFLK
ProtClustDB:PRK08451 BioCyc:CJEJ195099:GJC0-1319-MONOMER
Uniprot:Q5HTV4
Length = 509
Score = 204 (76.9 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 77/278 (27%), Positives = 127/278 (45%)
Query: 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTM-----IAACHQLF 91
KYRPKT D++I Q+ V LK L+ L H +LF G G+GKTS+ C Q
Sbjct: 8 KYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGP 67
Query: 92 GDMYRERILE-LNASDDRGIQVIR-DKVKTFAQQTASGFNQDGKPCPP---FKIVILDEA 146
D L A + + I +I D + + K P FKI I+DE
Sbjct: 68 SDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLEDIQALIEQTKYTPSMARFKIFIIDEV 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
+T A AL +T+E+ +F L + + SR FRFK + ++ +L L+
Sbjct: 128 HMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRFKQIPQSEILNHLK 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI-P- 264
I +E+V + +AL+ + + G +R +T L E +++ ++ G + P
Sbjct: 188 EILLKENVKFEEEALKFIARSGNGSLRDTLTLLDQAIIFCQNEISISKTT-DMLGFLDPE 246
Query: 265 --KPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQ 300
K + + +L D +V Y+E+L + Y A+ + D+
Sbjct: 247 KIKAFYQAILTKDKEKVFA-YLEEL--QDYEASSVIDE 281
>TAIR|locus:2012497 [details] [associations]
symbol:AT1G14460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 EMBL:CP002684
GO:GO:0005886 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 IPI:IPI00525486 RefSeq:NP_172898.2
UniGene:At.43554 UniGene:At.69297 ProteinModelPortal:F4HW65
SMR:F4HW65 PRIDE:F4HW65 EnsemblPlants:AT1G14460.1 GeneID:838008
KEGG:ath:AT1G14460 OMA:REVIAYK Uniprot:F4HW65
Length = 1116
Score = 197 (74.4 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 86/341 (25%), Positives = 154/341 (45%)
Query: 37 EKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTST---MIAA--CHQL 90
+KY+P D++I Q VV L + + H +LF GP GTGKTST + AA C +
Sbjct: 426 QKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTARILSAALNCDVV 485
Query: 91 FGDM----Y----------RER-ILELNASDDRGIQVIR---DKVKTFAQQTASGFNQDG 132
+M Y + R +LEL+A G + +R K+ T A Q++ +
Sbjct: 486 TEEMKPCGYCKECSDYMLGKSRDLLELDAGKKNGAEKVRYLLKKLLTLAPQSSQRY---- 541
Query: 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
K+ ++DE + +L + +E + F I + + + + SRC K+
Sbjct: 542 ------KVFVIDECHLLPSRTWLSLLKFLENPLQKFVFVCITTDLDNVPRTIQSRCQKYI 595
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
F + + ++ RL+ I E++ + +AL+ + + G +R A T L+ + + G+ I
Sbjct: 596 FNKVRDGDIVVRLRKIASDENLDVESQALDLIALNADGSLRDAETMLEQLSLM--GKRIT 653
Query: 253 NEDVLEVTGVIPKPWIEKLLKV----DSFQVLEKYIEDLILEA---YSATQLFDQFHDIV 305
+ V E+ GV+ + +LL++ D+ + ++K E L L A +QL DI+
Sbjct: 654 VDLVNELVGVVSDDKLLELLELALSSDTAETVKKARELLDLGADPILMMSQLASLIMDII 713
Query: 306 MLA-SSLSDKQKALFKALETLVETSGGDMRRAITCLQSCAR 345
A +L +K F L E ++ A+ L +
Sbjct: 714 AGAYKALDEKYSEAFLDRRNLTEADLERLKHALKLLSEAEK 754
>UNIPROTKB|E7DN81 [details] [associations]
symbol:E7DN81 "DnaX DNA polymerase III clamp loader complex
gamma-tau-delta subunit" species:59241 "Streptococcus phage Dp-1"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 EMBL:HQ268735
RefSeq:YP_004306905.1 IntAct:E7DN81 GeneID:10358613 Uniprot:E7DN81
Length = 341
Score = 184 (69.8 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 57/212 (26%), Positives = 107/212 (50%)
Query: 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYR 96
KYRP+T ++V+ Q+ V +L L + H +LF G GTGKT+T ++F
Sbjct: 6 KYRPQTFEEVVAQEYVKEILLNQLQNGAIKHGYLFCGGAGTGKTTTA-----RIFAKDVN 60
Query: 97 ERI---LELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+ + +E++A+ + G++ +R+ ++ ++ D + FK+ I+DE ++ A
Sbjct: 61 KGLGSPIEIDAASNNGVENVRNIIEDSRYKS-----MDSE----FKVYIIDEVHMLSTGA 111
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
AL +T+E+ + T F L I + SR +F F + + ++ +LQ+I E E+
Sbjct: 112 FNALLKTLEEPSSGTVFILCTTDPQKIPDTILSRVQRFDFTRIDNDDIVNQLQFIIESEN 171
Query: 214 -----VMCDFKALETLVETSGGDMRRAITCLQ 240
+ AL + + + G MR +IT L+
Sbjct: 172 EEGAGYSYERDALSFIGKLANGGMRDSITRLE 203
>UNIPROTKB|Q9KT51 [details] [associations]
symbol:VC_1054 "DNA polymerase III, subunits gamma and tau"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397 OMA:VQLYYQT
ProtClustDB:PRK07994 InterPro:IPR022001 Pfam:PF12168 HSSP:P06710
PIR:H82246 RefSeq:NP_230699.1 ProteinModelPortal:Q9KT51 SMR:Q9KT51
DNASU:2614324 GeneID:2614324 KEGG:vch:VC1054 PATRIC:20081206
Uniprot:Q9KT51
Length = 692
Score = 187 (70.9 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 77/312 (24%), Positives = 134/312 (42%)
Query: 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTST--MIAA---CHQLF 91
K+RP +V+ Q V++ L+ L+ L H +LF G G GKT+ + A C
Sbjct: 9 KWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGI 68
Query: 92 GDMYRERILELNASDD-RGIQVIR-DKV-KTFAQQTASGF-NQDGKPCPP-FKIVILDEA 146
+ D R + ++ D +T + T N KP FK+ ++DE
Sbjct: 69 TATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLIDEV 128
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
++ + AL +T+E+ + +F L + + SRC +F KP++ + +L
Sbjct: 129 HMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISVENIQQQLD 188
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL-EVTGVIPK 265
+ E + D KAL L + G MR A++ L G G+V D++ + G +
Sbjct: 189 KVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIAL--GNGVVKSDIVAHMLGTLDT 246
Query: 266 PWIEKLLKVDSFQVLEKYIEDLILEAYSAT-------QLFDQFHDIVMLASSLSDKQKAL 318
LL+ S Q + ++ + A + QL Q H I M + + K+L
Sbjct: 247 DHSLHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLHRIAMYQALPATLDKSL 306
Query: 319 FKA--LETLVET 328
+A +E+L +T
Sbjct: 307 PEASRIESLAKT 318
>TIGR_CMR|VC_1054 [details] [associations]
symbol:VC_1054 "DNA polymerase III, subunits gamma and tau"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 OMA:VQLYYQT ProtClustDB:PRK07994
InterPro:IPR022001 Pfam:PF12168 HSSP:P06710 PIR:H82246
RefSeq:NP_230699.1 ProteinModelPortal:Q9KT51 SMR:Q9KT51
DNASU:2614324 GeneID:2614324 KEGG:vch:VC1054 PATRIC:20081206
Uniprot:Q9KT51
Length = 692
Score = 187 (70.9 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 77/312 (24%), Positives = 134/312 (42%)
Query: 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTST--MIAA---CHQLF 91
K+RP +V+ Q V++ L+ L+ L H +LF G G GKT+ + A C
Sbjct: 9 KWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGI 68
Query: 92 GDMYRERILELNASDD-RGIQVIR-DKV-KTFAQQTASGF-NQDGKPCPP-FKIVILDEA 146
+ D R + ++ D +T + T N KP FK+ ++DE
Sbjct: 69 TATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYLIDEV 128
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
++ + AL +T+E+ + +F L + + SRC +F KP++ + +L
Sbjct: 129 HMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISVENIQQQLD 188
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL-EVTGVIPK 265
+ E + D KAL L + G MR A++ L G G+V D++ + G +
Sbjct: 189 KVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIAL--GNGVVKSDIVAHMLGTLDT 246
Query: 266 PWIEKLLKVDSFQVLEKYIEDLILEAYSAT-------QLFDQFHDIVMLASSLSDKQKAL 318
LL+ S Q + ++ + A + QL Q H I M + + K+L
Sbjct: 247 DHSLHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLHRIAMYQALPATLDKSL 306
Query: 319 FKA--LETLVET 328
+A +E+L +T
Sbjct: 307 PEASRIESLAKT 318
>TAIR|locus:2121934 [details] [associations]
symbol:AT4G24790 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 GO:GO:0005524 EMBL:CP002687
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 GO:GO:0009360
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 IPI:IPI00532502
RefSeq:NP_001119046.1 RefSeq:NP_194210.2 UniGene:At.54505
ProteinModelPortal:F4JRP8 SMR:F4JRP8 PRIDE:F4JRP8
EnsemblPlants:AT4G24790.1 EnsemblPlants:AT4G24790.2 GeneID:828581
KEGG:ath:AT4G24790 OMA:TWLTVAL Uniprot:F4JRP8
Length = 857
Score = 188 (71.2 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 77/322 (23%), Positives = 138/322 (42%)
Query: 37 EKYRPKTIDDVIEQQEVVS-VLKKCLSGADLPHFLFYGPPGTGKTST--MIAACHQLFGD 93
+K+RPK+ D+++ Q+ VV +L L G +LF+GP GTGKTST + AA
Sbjct: 243 QKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKIFAAALNCLSQ 302
Query: 94 MYRERILELNAS-----DDRGIQVIR-DKVKTFAQQTASGFNQDGKPCPP----FKIVIL 143
R L + RG V+ D K + PP FK+ I+
Sbjct: 303 AAHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYLRSLIKSAS-LPPVSSRFKVFII 361
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DE + L +++ ++ + F L+ + + + + + SR K+ F + + + T
Sbjct: 362 DECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRSQKYHFSKVCDADIST 421
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
+L IC +E + D A++ + S G +R A L + L G+ I ++ GV+
Sbjct: 422 KLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQLSLL--GKRITTSLAYKLIGVV 479
Query: 264 PKPWIEKLLKVD-SFQVLEKYIE--DLILEAYSATQLFDQFHDIVMLASSLSDKQKALFK 320
+ LL + S I +L+ QL Q +++M + + ++ +
Sbjct: 480 SDDELLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQLANVIMDIIAGNSQESSSAT 539
Query: 321 ALETLVE-TSGGDMRRAITCLQ 341
L L TS +M++ L+
Sbjct: 540 RLRFLTRHTSEEEMQKLRNALK 561
>GENEDB_PFALCIPARUM|PFB0895c [details] [associations]
symbol:PFB0895c "replication factor C subunit 1,
putative" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003689 EMBL:AE001362 HSSP:P26996 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 PIR:D71603 RefSeq:XP_001349697.1
ProteinModelPortal:O96271 PRIDE:O96271
EnsemblProtists:PFB0895c:mRNA GeneID:812779 KEGG:pfa:PFB0895c
EuPathDB:PlasmoDB:PF3D7_0219600 HOGENOM:HOG000284296 OMA:YNYEKKD
ProtClustDB:CLSZ2733780 Uniprot:O96271
Length = 904
Score = 171 (65.3 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 51/175 (29%), Positives = 89/175 (50%)
Query: 70 LFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN 129
L GP G GKT+T ++ + ++E NASD+R + +K+ A S +
Sbjct: 411 LLSGPAGIGKTTTA-----KIVSEASGYNVIEFNASDERNKAAV-EKISEMATGGYSIMS 464
Query: 130 QDGKPCPPFKIVILDEADSMTHA---AQAALRRTMEKETKSTRFCLICN-YVSCIIQPLT 185
+ + +I+DE D M+ A+ + +EK TK C ICN + ++ L
Sbjct: 465 LNNRKLTK-TCIIMDEVDGMSSGDKGGSTAILKLIEK-TKCPIIC-ICNDRQNNKMRTLA 521
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
++C +F +N+++ RL IC++E +M + ALE L E++ GD+R+ + LQ
Sbjct: 522 NKCYDLKFSMPQKNSVVKRLLEICKKEGIMMEPNALELLWESTCGDIRQMLNTLQ 576
Score = 63 (27.2 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLS 62
WVEKYRPK +++++ + V L+ L+
Sbjct: 353 WVEKYRPKNLNELVGNNQNVIKLQNWLA 380
>UNIPROTKB|O96271 [details] [associations]
symbol:PFB0895c "Replication factor C subunit 1, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003689 EMBL:AE001362 HSSP:P26996 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 PIR:D71603 RefSeq:XP_001349697.1
ProteinModelPortal:O96271 PRIDE:O96271
EnsemblProtists:PFB0895c:mRNA GeneID:812779 KEGG:pfa:PFB0895c
EuPathDB:PlasmoDB:PF3D7_0219600 HOGENOM:HOG000284296 OMA:YNYEKKD
ProtClustDB:CLSZ2733780 Uniprot:O96271
Length = 904
Score = 171 (65.3 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 51/175 (29%), Positives = 89/175 (50%)
Query: 70 LFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN 129
L GP G GKT+T ++ + ++E NASD+R + +K+ A S +
Sbjct: 411 LLSGPAGIGKTTTA-----KIVSEASGYNVIEFNASDERNKAAV-EKISEMATGGYSIMS 464
Query: 130 QDGKPCPPFKIVILDEADSMTHA---AQAALRRTMEKETKSTRFCLICN-YVSCIIQPLT 185
+ + +I+DE D M+ A+ + +EK TK C ICN + ++ L
Sbjct: 465 LNNRKLTK-TCIIMDEVDGMSSGDKGGSTAILKLIEK-TKCPIIC-ICNDRQNNKMRTLA 521
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
++C +F +N+++ RL IC++E +M + ALE L E++ GD+R+ + LQ
Sbjct: 522 NKCYDLKFSMPQKNSVVKRLLEICKKEGIMMEPNALELLWESTCGDIRQMLNTLQ 576
Score = 63 (27.2 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLS 62
WVEKYRPK +++++ + V L+ L+
Sbjct: 353 WVEKYRPKNLNELVGNNQNVIKLQNWLA 380
>TAIR|locus:2065299 [details] [associations]
symbol:STI "STICHEL" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0009360 "DNA
polymerase III complex" evidence=IEA] [GO:0010026 "trichome
differentiation" evidence=IMP] [GO:0010091 "trichome branching"
evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0000278 "mitotic cell cycle" evidence=RCA] [GO:0003002
"regionalization" evidence=RCA] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0009888 "tissue development" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010090 "trichome
morphogenesis" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010638 "positive regulation of organelle organization"
evidence=RCA] [GO:0016049 "cell growth" evidence=RCA] [GO:0016926
"protein desumoylation" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0045595 "regulation of cell
differentiation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048589 "developmental growth" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 GO:GO:0005886 GO:GO:0005524 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0010091
EMBL:AC004136 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 EMBL:AF264023 IPI:IPI00542444
PIR:T00615 RefSeq:NP_565285.1 UniGene:At.19529 HSSP:P06710
ProteinModelPortal:O64728 SMR:O64728 STRING:O64728 PaxDb:O64728
PRIDE:O64728 EnsemblPlants:AT2G02480.1 GeneID:814777
KEGG:ath:AT2G02480 TAIR:At2g02480 HOGENOM:HOG000244020
InParanoid:O64728 OMA:CHSKTLR PhylomeDB:O64728
ProtClustDB:CLSN2687935 ArrayExpress:O64728 Genevestigator:O64728
Uniprot:O64728
Length = 1218
Score = 185 (70.2 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 75/298 (25%), Positives = 132/298 (44%)
Query: 37 EKYRPKTIDDVIEQQEVVSVLKKCLSGADL-PHFLFYGPPGTGKTSTM---------IAA 86
+KYRP +++I Q VV L + + + P +LF GP GTGKTST +A
Sbjct: 453 QKYRPMFFEELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVAT 512
Query: 87 -----------CHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
C+ ++ EL+ ++ +G DKV+ + + ++
Sbjct: 513 EEMKPCGYCKECNDFMSGKSKD-FWELDGANKKGA----DKVRYLLKNLPTILPRNSSM- 566
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
+K+ ++DE + + + +E + F I + + + + SRC KF F
Sbjct: 567 --YKVFVIDECHLLPSKTWLSFLKFLENPLQKVVFIFITTDLENVPRTIQSRCQKFLFDK 624
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
L ++ ++ RL+ I E++ D AL+ + + G +R A T L+ + L G+ I
Sbjct: 625 LKDSDIVVRLKKIASDENLDVDLHALDLIAMNADGSLRDAETMLEQLSLL--GKRITTAL 682
Query: 256 VLEVTGVIPKPWIEKLLKVDSFQVLEKYIEDLILEAYS-ATQLFDQFHDIVMLASSLS 312
V E+ GV+ EKLL ++LE + E A +L D D ++L S L+
Sbjct: 683 VNELVGVVSD---EKLL-----ELLELALSSDTAETVKRARELLDLGADPIVLMSQLA 732
>TIGR_CMR|GSU_0094 [details] [associations]
symbol:GSU_0094 "DNA polymerase III, gamma and tau
subunits" species:243231 "Geobacter sulfurreducens PCA" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 HOGENOM:HOG000083933
KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HSSP:P28631
RefSeq:NP_951156.1 ProteinModelPortal:Q74GZ9 GeneID:2688299
KEGG:gsu:GSU0094 PATRIC:22022936 OMA:ELIDHFR ProtClustDB:PRK14965
BioCyc:GSUL243231:GH27-55-MONOMER Uniprot:Q74GZ9
Length = 579
Score = 179 (68.1 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 62/242 (25%), Positives = 108/242 (44%)
Query: 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTST--MIAACHQLFGDM 94
K+RP+T D+ Q+ V L+ + + H FLF G G GKTS+ ++A M
Sbjct: 9 KWRPQTFSDLTGQEHVSRTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALNCEQGM 68
Query: 95 YRE------RILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP---FKIVILDE 145
E E+ A + I D ++ K P +KI I+DE
Sbjct: 69 SPEPCNVCPACTEITAGTSVDVLEI-DGASNTGVDDIRELRENVKYLPSRLRYKIFIIDE 127
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK--PLAENTMLT 203
++ A AL +T+E+ +F + + SRC +F F+ PLA+ ++
Sbjct: 128 VHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKLPITILSRCQRFDFRRIPLAK--VVA 185
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
RL+YI ++E + ++L + G MR +++ L G E + ++DV+ + GV+
Sbjct: 186 RLRYIVDREGISISDESLAVVARKGDGSMRDSLSVLDQVLAFCG-ETVNDDDVVSLLGVV 244
Query: 264 PK 265
+
Sbjct: 245 DR 246
>TAIR|locus:2172013 [details] [associations]
symbol:AT5G45720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
EMBL:CP002688 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
IPI:IPI00536419 RefSeq:NP_199384.2 UniGene:At.51078
UniGene:At.70630 ProteinModelPortal:F4KEM0 SMR:F4KEM0 PRIDE:F4KEM0
EnsemblPlants:AT5G45720.1 GeneID:834611 KEGG:ath:AT5G45720
OMA:ESGRSEI Uniprot:F4KEM0
Length = 966
Score = 182 (69.1 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 64/246 (26%), Positives = 110/246 (44%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTS-TMIAA----CH 88
+ +KY P+T D++ Q VV L ++ + ++F+GP GTGKTS + A CH
Sbjct: 345 FTQKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGKTSCARVFARALNCH 404
Query: 89 QLFGDMYRERILELNASDDRGIQVIRDK--VKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
+ DD + IR+ VK+F + + ++I D+
Sbjct: 405 STEQSKPCGVCSSCVSYDDGKNRYIREMGPVKSFDFENLLDKTNIRQQQKQQLVLIFDDC 464
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+M+ L + +++ + F L+C+ + + + SRC KF F L + ++ LQ
Sbjct: 465 DTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQKFFFPKLKDVDIIDSLQ 524
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP 266
I +E + D AL+ + S G +R A L+ + L G I V E+ G+I
Sbjct: 525 LIASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLSLL--GTRISVPLVQEMVGLISDE 582
Query: 267 WIEKLL 272
+ LL
Sbjct: 583 KLVDLL 588
>WB|WBGene00004337 [details] [associations]
symbol:rfc-1 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA] [GO:0005663
"DNA replication factor C complex" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 GO:GO:0005524 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0006260 GO:GO:0000003 GO:GO:0006974 eggNOG:COG0470
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 EMBL:Z75532 PIR:T20230
RefSeq:NP_001256606.1 ProteinModelPortal:Q18841 SMR:Q18841
IntAct:Q18841 MINT:MINT-228102 STRING:Q18841 PaxDb:Q18841
EnsemblMetazoa:C54G10.2a GeneID:179967 KEGG:cel:CELE_C54G10.2
UCSC:C54G10.2 CTD:179967 WormBase:C54G10.2a HOGENOM:HOG000017534
InParanoid:Q18841 OMA:DYAPMLR NextBio:907580 Uniprot:Q18841
Length = 839
Score = 180 (68.4 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 70/244 (28%), Positives = 113/244 (46%)
Query: 30 NKPVPWVEKYRPKTIDDVIE-QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
NK + W++ + + + + ++ + G L G PG GKT+ AC
Sbjct: 303 NKLLEWIKDWAKHNLGEGAKIKKPKPAPWMSSQDGTSFKAALLSGSPGVGKTTCAYMACQ 362
Query: 89 QLFGDMYRERILELNASDDRGIQVIRDKVKTFA--QQTASGFNQDGKPCPP------FKI 140
QL G +++E+NASD R + + K+ + Q F K C P I
Sbjct: 363 QL-G----LQLVEMNASDVRSKKHLEAKIGELSGSHQIEQFFG--AKKCAPQDNQKVHHI 415
Query: 141 VILDEADSMT-HAAQAALRRTME--KETKSTRFCLICN-YVSCIIQPLTSRCSKFRF-KP 195
+I+DE D M+ + +A + ++ KE+K C ICN I+ L + C RF KP
Sbjct: 416 LIMDEVDGMSGNEDRAGISELIQIIKESKIPIIC-ICNDRQHPKIRTLANYCYDLRFPKP 474
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
E T+ +R+ IC QE + + L+ ++E SG D+R+ I LQ R KG +N+
Sbjct: 475 RVE-TIRSRMMTICSQEKMKIGKEELDEIIELSGHDVRQTIYNLQM--RSKGVGAKINQK 531
Query: 256 VLEV 259
+ V
Sbjct: 532 DMAV 535
>TAIR|locus:2032432 [details] [associations]
symbol:AT1G24290 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR000449 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR009060 Pfam:PF00004 Pfam:PF00627 SMART:SM00382
EMBL:CP002684 GO:GO:0005524 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 GO:GO:0017111 SUPFAM:SSF46934 EMBL:AC002396
UniGene:At.41453 UniGene:At.63976 HOGENOM:HOG000017623 KO:K07478
InterPro:IPR021886 Pfam:PF12002 IPI:IPI00523189 PIR:T00660
RefSeq:NP_173839.1 HSSP:Q56313 ProteinModelPortal:O48696 SMR:O48696
STRING:O48696 PRIDE:O48696 EnsemblPlants:AT1G24290.1 GeneID:839045
KEGG:ath:AT1G24290 TAIR:At1g24290 InParanoid:O48696 OMA:FEVIAPL
PhylomeDB:O48696 ProtClustDB:CLSN2682390 Genevestigator:O48696
Uniprot:O48696
Length = 525
Score = 176 (67.0 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 66/235 (28%), Positives = 104/235 (44%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVS---VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
P E+ RP+T+DDV+ Q ++S +L+ + LP +F+GPPGTGKTS + +
Sbjct: 102 PLSERMRPRTLDDVVGQDHLLSPSSLLRSAVESNRLPSIVFWGPPGTGKTSIAKSLINSS 161
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
D R + L+A G++ +RD V ++A N +G+ ++ +DE
Sbjct: 162 -KDPSLYRFVSLSAVTS-GVKDVRDAV-----ESAKRLNLEGRKRT---VLFMDEVHRFN 211
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAEN---TMLTRLQY 207
+ Q +E + N +I PL SRC PL N T+L R
Sbjct: 212 KSQQDTFLPVIEDGSILFIGATTENPSFHLITPLLSRCRVLTLNPLKPNHVETLLRRAVD 271
Query: 208 ICEQ---ESVMCDFKALETLVETSGGDMRRAITCLQSCARLK----GGEGIVNED 255
E+ SV D +E L GD R A+ L+ A + G + +V+ D
Sbjct: 272 DSERGLPNSVEVDDSVIEFLANNCDGDARVALNALEISATMATTRAGTDAVVSID 326
>TIGR_CMR|SO_2013 [details] [associations]
symbol:SO_2013 "DNA polymerase III, gamma and tau subunits"
species:211586 "Shewanella oneidensis MR-1" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HOGENOM:HOG000083934 HSSP:P06710 RefSeq:NP_717619.1
ProteinModelPortal:Q8EFG0 SMR:Q8EFG0 GeneID:1169765
KEGG:son:SO_2013 PATRIC:23523647 OMA:PKSGLEM ProtClustDB:PRK14949
Uniprot:Q8EFG0
Length = 1002
Score = 179 (68.1 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 74/302 (24%), Positives = 134/302 (44%)
Query: 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTST--MIAA---CHQ-L 90
K+RP T + ++ Q V+ L L+ L H +LF G G GKTS + A C +
Sbjct: 9 KWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCETGV 68
Query: 91 FGDMYRERILELNASDDRGIQVIR-DKV-KTFAQQTASGF-NQDGKPCPP-FKIVILDEA 146
+ + R + +I D +T T N +P FK+ ++DE
Sbjct: 69 TASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRFKVYLIDEV 128
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
++ ++ AL +T+E+ + +F L + + SRC +F K L + + T+LQ
Sbjct: 129 HMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQQEIGTQLQ 188
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP 266
+I QE + + +AL L +++ G MR A++ GG ++N+ V + G I +
Sbjct: 189 HILTQEQLPFEHEALGLLAKSANGSMRDALSLTDQAIAFGGGTVMLNQ-VQSMLGSIDEQ 247
Query: 267 WIEKLLKVDSFQVLEKYIEDLI-LEAYSAT------QLFDQFHDIVMLASSLSDKQKALF 319
+ LLK + + ++ + AY A L + H I + + + Q++L+
Sbjct: 248 HVLGLLKALTDADIGALMQSCAQVLAYGADAQEVLRSLLELLHQITLTQFAPAAAQQSLY 307
Query: 320 KA 321
A
Sbjct: 308 SA 309
>UNIPROTKB|Q47XQ9 [details] [associations]
symbol:dnaX "DNA polymerase III, gamma/tau subunit"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HOGENOM:HOG000083934
RefSeq:YP_270411.1 ProteinModelPortal:Q47XQ9 SMR:Q47XQ9
STRING:Q47XQ9 GeneID:3522410 KEGG:cps:CPS_3744 PATRIC:21470407
OMA:ICEFLAR BioCyc:CPSY167879:GI48-3766-MONOMER Uniprot:Q47XQ9
Length = 715
Score = 177 (67.4 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 76/290 (26%), Positives = 129/290 (44%)
Query: 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTS-TMIAA----CHQLF 91
K+RPK ++ Q+ VV+VL LS L H +LF G G GKT+ I A C
Sbjct: 9 KWRPKNFQQLMGQEHVVNVLANALSQKRLHHAYLFTGTRGVGKTTIARIFAKSLNCELGI 68
Query: 92 GDMYRERILE-LNASDDRGIQVIR-DKV-KTFAQQTASGF-NQDGKPCPP-FKIVILDEA 146
D + ++ R + ++ D KT T N P FK+ ++DE
Sbjct: 69 TDKPCGKCDACIDIDQGRFVDLLEIDAASKTKVDDTREILDNVQYAPSRGRFKVYLIDEV 128
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
++ + AL +T+E+ + +F L + + SRC +F K L + +L
Sbjct: 129 HMLSRHSFNALLKTLEEPPEHVKFILATTDPQKLPITVLSRCLQFHLKALTVKQIEDKLA 188
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPK 265
I E V + L L + + G MR +++ + G+G +N ++ ++ G I +
Sbjct: 189 EILSHEQVSHEQGCLTLLAKAARGSMRDSLSLTDQA--IAQGQGHINLTNIQQMLGGIDQ 246
Query: 266 PWIEKL----LKVDSFQVLEKYIEDLILEAYSATQLFDQ----FHDIVML 307
W+ +L LK DS Q L +++ A S ++LF + FH I ++
Sbjct: 247 NWVYQLVITLLKQDS-QALMTLSQEIASYAPSYSRLFAELIQLFHQIALM 295
>TIGR_CMR|CPS_3744 [details] [associations]
symbol:CPS_3744 "DNA polymerase III, gamma/tau subunit"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HOGENOM:HOG000083934
RefSeq:YP_270411.1 ProteinModelPortal:Q47XQ9 SMR:Q47XQ9
STRING:Q47XQ9 GeneID:3522410 KEGG:cps:CPS_3744 PATRIC:21470407
OMA:ICEFLAR BioCyc:CPSY167879:GI48-3766-MONOMER Uniprot:Q47XQ9
Length = 715
Score = 177 (67.4 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 76/290 (26%), Positives = 129/290 (44%)
Query: 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTS-TMIAA----CHQLF 91
K+RPK ++ Q+ VV+VL LS L H +LF G G GKT+ I A C
Sbjct: 9 KWRPKNFQQLMGQEHVVNVLANALSQKRLHHAYLFTGTRGVGKTTIARIFAKSLNCELGI 68
Query: 92 GDMYRERILE-LNASDDRGIQVIR-DKV-KTFAQQTASGF-NQDGKPCPP-FKIVILDEA 146
D + ++ R + ++ D KT T N P FK+ ++DE
Sbjct: 69 TDKPCGKCDACIDIDQGRFVDLLEIDAASKTKVDDTREILDNVQYAPSRGRFKVYLIDEV 128
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
++ + AL +T+E+ + +F L + + SRC +F K L + +L
Sbjct: 129 HMLSRHSFNALLKTLEEPPEHVKFILATTDPQKLPITVLSRCLQFHLKALTVKQIEDKLA 188
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPK 265
I E V + L L + + G MR +++ + G+G +N ++ ++ G I +
Sbjct: 189 EILSHEQVSHEQGCLTLLAKAARGSMRDSLSLTDQA--IAQGQGHINLTNIQQMLGGIDQ 246
Query: 266 PWIEKL----LKVDSFQVLEKYIEDLILEAYSATQLFDQ----FHDIVML 307
W+ +L LK DS Q L +++ A S ++LF + FH I ++
Sbjct: 247 NWVYQLVITLLKQDS-QALMTLSQEIASYAPSYSRLFAELIQLFHQIALM 295
>FB|FBgn0004913 [details] [associations]
symbol:Gnf1 "Germ line transcription factor 1" species:7227
"Drosophila melanogaster" [GO:0003677 "DNA binding"
evidence=NAS;IDA] [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0006260 "DNA replication" evidence=IEA;NAS] [GO:0005663 "DNA
replication factor C complex" evidence=IEA;NAS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 EMBL:AE014297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005875 GO:GO:0022008
GO:GO:0006355 GO:GO:0003677 GO:GO:0006260 GO:GO:0006351
GO:GO:0046331 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 EMBL:L17340 EMBL:U97685 EMBL:AY122077
EMBL:BT003618 RefSeq:NP_001014605.1 RefSeq:NP_524229.1
UniGene:Dm.2491 ProteinModelPortal:P35600 SMR:P35600 DIP:DIP-18735N
IntAct:P35600 MINT:MINT-961959 STRING:P35600 PaxDb:P35600
EnsemblMetazoa:FBtr0078837 GeneID:40607 KEGG:dme:Dmel_CG1119
CTD:100035172 FlyBase:FBgn0004913 eggNOG:COG5275 InParanoid:P35600
OrthoDB:EOG4S1RP9 GenomeRNAi:40607 NextBio:819627 GermOnline:CG1119
Uniprot:P35600
Length = 986
Score = 173 (66.0 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 75/279 (26%), Positives = 129/279 (46%)
Query: 70 LFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF-AQQTASG- 127
L GPPG GKT+T +L D +E NASD R ++++D+V T + ++ SG
Sbjct: 484 LLSGPPGIGKTTTATLVVKELGFDA-----VEFNASDTRSKRLLKDEVSTLLSNKSLSGY 538
Query: 128 FNQDGKPCPPFKIVILDEADSMT-HAAQAALRRTME--KETKSTRFCLICNYVSCI-IQP 183
F G+ ++I+DE D M + + ++ + K++ C+ CN + I+
Sbjct: 539 FTGQGQAVSRKHVLIMDEVDGMAGNEDRGGMQELIALIKDSSIPIICM-CNDRNHPKIRS 597
Query: 184 LTSRCSKFRF-KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAIT--CLQ 240
L + C RF +P E + ++ IC +E V +E ++ + D+R++I L
Sbjct: 598 LVNYCYDLRFQRPRLEQ-IKGKIMSICFKEKVKISPAKVEEIIAATNNDIRQSINHIALL 656
Query: 241 SC---ARLKGGEGIVNEDVLEVTGVIPKPW--IEKLLKVDSFQVLEKYIE-DLILEAYSA 294
S A K G+ + +D L++ G PW + K+ D + + + DL YS
Sbjct: 657 SAKEDASQKSGQQVATKD-LKL-G----PWEVVRKVFTADEHKHMSFADKSDLFFHDYSL 710
Query: 295 TQLFDQFHDIVMLASSLSDKQKALFKALETLVETSGGDM 333
LF Q + + +L +K+ L K T S GD+
Sbjct: 711 APLFVQQNYLQVLPQG--NKKDVLAKVAATADALSLGDL 747
Score = 52 (23.4 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLS 62
WV+K++P +I +++ Q S + K ++
Sbjct: 423 WVDKHKPTSIKEIVGQAGAASNVTKLMN 450
>TIGR_CMR|ECH_0014 [details] [associations]
symbol:ECH_0014 "DNA polymerase III, subunits gamma and
tau" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003583
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00278 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006260 GO:GO:0006281 GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 RefSeq:YP_506849.1
ProteinModelPortal:Q2GI84 STRING:Q2GI84 GeneID:3926952
KEGG:ech:ECH_0014 PATRIC:20575601 OMA:HPDVIEI ProtClustDB:PRK14964
BioCyc:ECHA205920:GJNR-14-MONOMER Uniprot:Q2GI84
Length = 505
Score = 173 (66.0 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 65/286 (22%), Positives = 135/286 (47%)
Query: 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTST--MIAAC-HQLFG- 92
KYRP D+I Q+ +V VL +P L G G GKT+ +I+ C + + G
Sbjct: 19 KYRPSNFKDLIGQEVLVRVLHNAFHLNKIPESILLTGISGVGKTTAARIISMCLNCISGP 78
Query: 93 --DMYR--ERILEL-NASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCP---PFKIVILD 144
D + + + N + I++ D + + ++ + P FK+ I+D
Sbjct: 79 TSDPCNTCQNCISIKNFNHPDVIEI--DAASNTSIEDVKVILENSRYMPISSKFKVYIID 136
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
E ++++A AL + +E+ +F L V I + SRC +F F+ ++ + ++
Sbjct: 137 EVHMLSNSAFNALLKVLEEPAPYVKFILATTEVKKIPVTIISRCQRFDFQRISTDKLVDH 196
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL-EVTGVI 263
L+ + ++E+V D ++++ + + G +R A++ L+ A I++E++ E+ G +
Sbjct: 197 LKVVAKKENVSFDEESIKLIAYNADGSIRNALSLLEQAAIYSNK--ILSENITKEMLGYV 254
Query: 264 PKPW----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
+ IE L+ ++ + L K+ E +Y++ + D I+
Sbjct: 255 SRHTLLEIIEPLIIGNATEALNKFEE--ACNSYNSVIILDNMLQII 298
>TIGR_CMR|CBU_0659 [details] [associations]
symbol:CBU_0659 "DNA polymerase III, gamma and tau
subunits" species:227377 "Coxiella burnetii RSA 493" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HOGENOM:HOG000083934 HSSP:P06710 RefSeq:NP_819689.1
ProteinModelPortal:Q83DN8 SMR:Q83DN8 GeneID:1208544
KEGG:cbu:CBU_0659 PATRIC:17929995 OMA:CETKLLA ProtClustDB:PRK14958
BioCyc:CBUR227377:GJ7S-653-MONOMER Uniprot:Q83DN8
Length = 509
Score = 172 (65.6 bits), Expect = 7.5e-10, P = 7.5e-10
Identities = 80/312 (25%), Positives = 132/312 (42%)
Query: 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKT--STMIAACHQLFGDM 94
K+RP+ +VI Q VV L L L H +LF G G GKT S ++A C +
Sbjct: 9 KWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGV 68
Query: 95 YRERILEL-NASD-DRGIQVIRDKVKTFAQQTASGFNQ--DGKPCPP----FKIVILDEA 146
+ N + D G +V ++ + D P P FK+ ++DE
Sbjct: 69 SANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEV 128
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
++ + AL +T+E+ +F L + + SRC +F L + Q
Sbjct: 129 HMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQ 188
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP 266
++ ++E+V + AL+ L + G +R A++ L G+ ++ DV + G I
Sbjct: 189 HLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLI-ADVKTMLGTI--- 244
Query: 267 WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIV-MLASSLSD-KQKALFKAL-E 323
E LL D + L D +L T+L +Q D LA LS Q A+ + + E
Sbjct: 245 --EPLLLFDILEALAAKAGDRLLGC--VTRLVEQGVDFSNALADLLSLLHQIAIIQTVPE 300
Query: 324 TLVETSGGDMRR 335
L+E +R+
Sbjct: 301 ALIENDSEQLRQ 312
>UNIPROTKB|Q2GDS0 [details] [associations]
symbol:NSE_0492 "Putative DNA polymerase III, gamma/tau
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0017111
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_506376.1 ProteinModelPortal:Q2GDS0 STRING:Q2GDS0
GeneID:3931782 KEGG:nse:NSE_0492 PATRIC:22681033
HOGENOM:HOG000127275 OMA:IKEEIWI ProtClustDB:CLSK2528078
BioCyc:NSEN222891:GHFU-512-MONOMER Uniprot:Q2GDS0
Length = 396
Score = 168 (64.2 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 71/307 (23%), Positives = 134/307 (43%)
Query: 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIA----------- 85
KYRP+ +D+++ Q +V L ++ ++ L GP GTGKT+T A
Sbjct: 9 KYRPRLLDEIVGQDFLVKCLSASIARDEVAGAILLSGPYGTGKTTTARAVTLSLLCLNRT 68
Query: 86 ---------ACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC- 135
+C + + + ILE++A+ + G++ +R ++ KP
Sbjct: 69 SALPCLKCDSCISILSGSHPD-ILEIDAASNTGVEDVRMLIEGALY----------KPLL 117
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
+K I+DE ++ +A +AL + +E+ + +F L + I + SRC +R
Sbjct: 118 SKYKSYIVDEVHMLSQSAFSALLKLLEEPPQHVKFFLATTELQKIPATIISRCQHYRLSR 177
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
L+ + RL + E+E + A++ + E + G +R A++ L+ L EG +
Sbjct: 178 LSRVVIAERLTQVAEKEQIEITQDAIKFIAEKADGSLRDALSLLEQVT-LHPSEGKITVH 236
Query: 256 VLE-VTGVIPKPWIEKLLKV----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASS 310
VL G++ + LL D L K + DL + Y +F + + ++
Sbjct: 237 VLRNKMGLVDLSEVYMLLDSIIAGDCKTSLGK-LNDLYSKGYEMLTIFMEL--VALINEK 293
Query: 311 LSDKQKA 317
+ DK A
Sbjct: 294 IQDKLTA 300
>TIGR_CMR|NSE_0492 [details] [associations]
symbol:NSE_0492 "putative DNA polymerase III, gamma/tau
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0017111
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_506376.1 ProteinModelPortal:Q2GDS0 STRING:Q2GDS0
GeneID:3931782 KEGG:nse:NSE_0492 PATRIC:22681033
HOGENOM:HOG000127275 OMA:IKEEIWI ProtClustDB:CLSK2528078
BioCyc:NSEN222891:GHFU-512-MONOMER Uniprot:Q2GDS0
Length = 396
Score = 168 (64.2 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 71/307 (23%), Positives = 134/307 (43%)
Query: 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIA----------- 85
KYRP+ +D+++ Q +V L ++ ++ L GP GTGKT+T A
Sbjct: 9 KYRPRLLDEIVGQDFLVKCLSASIARDEVAGAILLSGPYGTGKTTTARAVTLSLLCLNRT 68
Query: 86 ---------ACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC- 135
+C + + + ILE++A+ + G++ +R ++ KP
Sbjct: 69 SALPCLKCDSCISILSGSHPD-ILEIDAASNTGVEDVRMLIEGALY----------KPLL 117
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
+K I+DE ++ +A +AL + +E+ + +F L + I + SRC +R
Sbjct: 118 SKYKSYIVDEVHMLSQSAFSALLKLLEEPPQHVKFFLATTELQKIPATIISRCQHYRLSR 177
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
L+ + RL + E+E + A++ + E + G +R A++ L+ L EG +
Sbjct: 178 LSRVVIAERLTQVAEKEQIEITQDAIKFIAEKADGSLRDALSLLEQVT-LHPSEGKITVH 236
Query: 256 VLE-VTGVIPKPWIEKLLKV----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASS 310
VL G++ + LL D L K + DL + Y +F + + ++
Sbjct: 237 VLRNKMGLVDLSEVYMLLDSIIAGDCKTSLGK-LNDLYSKGYEMLTIFMEL--VALINEK 293
Query: 311 LSDKQKA 317
+ DK A
Sbjct: 294 IQDKLTA 300
>SGD|S000005743 [details] [associations]
symbol:RFC1 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000278 "mitotic cell cycle"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IEA] [GO:0051301
"cell division" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA;IDA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=TAS] [GO:0006281 "DNA
repair" evidence=IMP] [GO:0006272 "leading strand elongation"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 SGD:S000005743 Pfam:PF00533 GO:GO:0005524
GO:GO:0005634 EMBL:BK006948 GO:GO:0051301 GO:GO:0006298 EMBL:X92441
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0000278 GO:GO:0003689
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 PDB:1SXJ PDBsum:1SXJ
KO:K10754 eggNOG:COG5275 HOGENOM:HOG000164552 OMA:KLRMDER
OrthoDB:EOG4WDHM8 EMBL:U03102 EMBL:U26027 EMBL:Z75125 PIR:S44763
RefSeq:NP_014860.1 ProteinModelPortal:P38630 SMR:P38630
DIP:DIP-2527N IntAct:P38630 MINT:MINT-619267 STRING:P38630
PaxDb:P38630 PeptideAtlas:P38630 EnsemblFungi:YOR217W GeneID:854392
KEGG:sce:YOR217W CYGD:YOR217w EvolutionaryTrace:P38630
NextBio:976553 Genevestigator:P38630 GermOnline:YOR217W
Uniprot:P38630
Length = 861
Score = 171 (65.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 59/226 (26%), Positives = 105/226 (46%)
Query: 70 LFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT-FAQQTASGF 128
+ YGPPG GKT+ +L D ILE NASD R ++ VK + G+
Sbjct: 350 MLYGPPGIGKTTAAHLVAQELGYD-----ILEQNASDVRSKTLLNAGVKNALDNMSVVGY 404
Query: 129 NQDGKPCPPFK----IVILDEADSMTHAAQAALRRTMEKETK-STRFCLICNYVSCI-IQ 182
+ + ++I+DE D M+ + + + + K ST LICN + ++
Sbjct: 405 FKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMR 464
Query: 183 PLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
P C +F+ N++ +RL I +E D ++ L++T+ GD+R+ I L +
Sbjct: 465 PFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTI 524
Query: 243 ARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKVDSFQVLEKYIEDLI 288
+ + I +E++ E++ K W EK + + F + K ++ I
Sbjct: 525 STTT--KTINHENINEIS----KAW-EKNIALKPFDIAHKMLDGQI 563
>TIGR_CMR|GSU_2067 [details] [associations]
symbol:GSU_2067 "ATPase, AAA family" species:243231
"Geobacter sulfurreducens PCA" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111
HOGENOM:HOG000017623 KO:K07478 ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 OMA:FEVIAPL RefSeq:NP_953116.1
ProteinModelPortal:Q74BH4 GeneID:2686000 KEGG:gsu:GSU2067
PATRIC:22026995 BioCyc:GSUL243231:GH27-1993-MONOMER Uniprot:Q74BH4
Length = 440
Score = 164 (62.8 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 71/271 (26%), Positives = 123/271 (45%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVS---VLKKCLSGADLPHFLFYGPPGTGKTSTMIA 85
RN P+ E+ RP+T+D+ + Q+ ++ +L++ + L +F+GPPG+GKT+ +A
Sbjct: 14 RNAPL--AERMRPRTLDEYVGQEHLLGEGKLLRRLIESDTLTSLIFWGPPGSGKTT--LA 69
Query: 86 ACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTA-SGFNQDGKPCPPFKIVILD 144
++ + + + +A GI+ IR+ VK ++ G N I+ +D
Sbjct: 70 ---RVIANATKSHFIFFSAILS-GIKEIREIVKEAEEEKKYRGRNT---------ILFVD 116
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA-ENTMLT 203
E + Q A +E+ T + N ++ PL SRC PL+ EN
Sbjct: 117 EIHRFNKSQQDAFLPYVERGTFTIIGATTENPSFEVVAPLLSRCKVLVLNPLSQENVEQI 176
Query: 204 RLQYICEQE------SVMCDFKALETLVETSGGDMRRAITCLQSCARL-KGGEGIVNEDV 256
+ + E + D AL + E SGGD R A+ L++ ARL K G I E V
Sbjct: 177 LRSALADPERGLGASGLAADDDALAFMAEQSGGDGRVALNTLETAARLVKNGR-IDLESV 235
Query: 257 LEVTGVIPKPWIEKLLKVDSFQVLEKYIEDL 287
E + KP + + + V+ +I+ +
Sbjct: 236 REA--IQKKPLLYDKGGEEHYNVISAFIKSM 264
>UNIPROTKB|P63975 [details] [associations]
symbol:dnaX "DNA polymerase III subunit gamma/tau"
species:1773 "Mycobacterium tuberculosis" [GO:0040007 "growth"
evidence=IMP] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842583 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
PIR:B70796 RefSeq:NP_218238.1 RefSeq:NP_338379.1
RefSeq:YP_006517213.1 ProteinModelPortal:P63975 SMR:P63975
PRIDE:P63975 EnsemblBacteria:EBMYCT00000002188
EnsemblBacteria:EBMYCT00000072154 GeneID:13317335 GeneID:885361
GeneID:922673 KEGG:mtc:MT3824 KEGG:mtu:Rv3721c KEGG:mtv:RVBD_3721c
PATRIC:18130168 TubercuList:Rv3721c OMA:IARVEPH
ProtClustDB:PRK14952 Uniprot:P63975
Length = 578
Score = 165 (63.1 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 74/294 (25%), Positives = 118/294 (40%)
Query: 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTM-IAA----CHQLF 91
KYRP + +V+ Q+ V + L L + H +LF GP G GKTS+ I A C Q
Sbjct: 6 KYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQ-- 63
Query: 92 GDMYR-----ERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP----FKIVI 142
G E + L + I V+ + + +D P +++ I
Sbjct: 64 GPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYRVFI 123
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
+DEA +T A AL + +E+ + F ++ + SR + F+ L TM
Sbjct: 124 VDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMR 183
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
L ICEQE V+ D ++ GG R ++ L + L + GV
Sbjct: 184 ALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTRALGLLGV 243
Query: 263 IPKPWIEK----LLKVDS---FQVLEKYIEDLILEAYSATQLFDQFHDIVMLAS 309
I+ L D+ F +E I+ AT L ++F D+++L S
Sbjct: 244 TDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQS 297
Score = 39 (18.8 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 12/58 (20%), Positives = 28/58 (48%)
Query: 395 ATQLFDQFHDIVMSASSLSDKQKALI------LEKLAECNARLQDGA-SEYIQILDLG 445
AT L ++F D+++ S + ++ L+++ E AR+ + Y +++ G
Sbjct: 282 ATDLLERFRDLIVLQSVPDAASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAG 339
>TAIR|locus:504956441 [details] [associations]
symbol:RFC1 "replication factor C1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003689
"DNA clamp loader activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0031935
"regulation of chromatin silencing" evidence=IMP] [GO:0051570
"regulation of histone H3-K9 methylation" evidence=IMP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0007126
"meiosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR010372 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF06144 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0009737 GO:GO:0007126 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006260 GO:GO:0006974 GO:GO:0051570
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
GO:GO:0003887 EMBL:AL589883 HSSP:P26996 GO:GO:0009360
SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 eggNOG:COG5275 OMA:KLRMDER
GO:GO:0031935 EMBL:BT014965 IPI:IPI00543426 RefSeq:NP_680188.1
UniGene:At.45635 ProteinModelPortal:Q9C587 SMR:Q9C587 STRING:Q9C587
PaxDb:Q9C587 PRIDE:Q9C587 EnsemblPlants:AT5G22010.1 GeneID:832261
KEGG:ath:AT5G22010 TAIR:At5g22010 HOGENOM:HOG000085054
InParanoid:Q9C587 PhylomeDB:Q9C587 ProtClustDB:CLSN2690182
Genevestigator:Q9C587 Uniprot:Q9C587
Length = 956
Score = 134 (52.2 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 52/184 (28%), Positives = 81/184 (44%)
Query: 70 LFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG---IQVIR-------DKVKT 119
L G PG GKT++ +L M + +E+NASD RG + + + VK
Sbjct: 397 LLSGTPGIGKTTSA-----KLVSQMLGFQAVEVNASDSRGKANSNIAKGIGGSNANSVKE 451
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTME--KETKSTRFCLICN-Y 176
A N D P ++I+DE D M+ + + + K +K C ICN
Sbjct: 452 LVNNEAMAANFDRSKHPK-TVLIMDEVDGMSAGDRGGVADLIASIKISKIPIIC-ICNDR 509
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
S ++ L + C ++ + M RL +I + E + + ALE L E GD+R A+
Sbjct: 510 YSQKLKSLVNYCLPLNYRKPTKQQMAKRLMHIAKAEGLEINEIALEELAERVNGDIRLAV 569
Query: 237 TCLQ 240
LQ
Sbjct: 570 NQLQ 573
Score = 76 (31.8 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGK 79
+PW EKYRPK ++++ Q +V+ L LS H F G GK
Sbjct: 340 LPWTEKYRPKVPNEIVGNQSLVTQLHNWLSHW---HDQFGGTGSKGK 383
Score = 43 (20.2 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 289 LEAYSATQLFDQFHDIVM-LASSLSDKQKALFKALETLVETSGGDMR 334
L+ S + ++ DI L SS D+ + F A++ L +GG +R
Sbjct: 572 LQYMSLSMSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGYNGGKLR 618
>UNIPROTKB|O83970 [details] [associations]
symbol:TP_1005 "DNA polymerase III, subunits gamma and tau
(DnaH)" species:243276 "Treponema pallidum subsp. pallidum str.
Nichols" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001270 InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 EMBL:AE000520 GenomeReviews:AE000520_GR
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HSSP:P06710 PIR:G71254 RefSeq:NP_219442.1 ProteinModelPortal:O83970
IntAct:O83970 GeneID:2610796 KEGG:tpa:TP1005 PATRIC:20532135
OMA:ANAYIFS ProtClustDB:PRK06647 Uniprot:O83970
Length = 572
Score = 156 (60.0 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 90/396 (22%), Positives = 165/396 (41%)
Query: 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADL-PHFLFYGPPGTGKTST--MIAACHQLFGDM 94
+YRP+ V+ Q+ VV+ L+K L + P +LF GP G GKTS ++A
Sbjct: 9 RYRPQRFQHVLGQKFVVATLQKSLEENKVSPAYLFSGPHGCGKTSCARILAKALNCVQRE 68
Query: 95 YRERILELNASDDRGIQVIRDKVKTF-AQQTASGFNQDGKP---CPP----FKIVILDEA 146
E E + + + ++ A T G + K PP +K+ I+DE
Sbjct: 69 ASEPCGECPSCREIATGTNLNVIEIDGASHTGVGDVRQIKEEILFPPHGTRYKVFIIDEV 128
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
++++A AL +T+E+ F V I + SRC +F F+ + T++ L
Sbjct: 129 HMLSNSAFNALLKTIEEPPPYVVFIFATTEVHRIPATVKSRCQQFHFRLVDTQTLVCALA 188
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP 266
+Q + + L + S G MR A T G + E++ + G++
Sbjct: 189 QAAQQMQIAVEDGVLSWIARESAGSMRDAYTLFDQTVVSCAGP-VTLENIQKKLGLMTDD 247
Query: 267 WIEKLL----KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKAL 322
+ L + D+ LE ++ L+ S Q D V A +L + +
Sbjct: 248 SLAALFSHCCRKDARAALE-LVDALVSSGVSVEQCVI---DCVRYARALLLFTQGITN-- 301
Query: 323 ETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLE 382
E+LV + + + + ++++ G++ + ++ + +P E L + L
Sbjct: 302 ESLVGIAANQVPEYVRTTWNASQIERALGLLLQLFRDIRFSV-DPRYELELAISRLAWLS 360
Query: 383 KY--IEDLILEAYSATQLFDQFHDI--VMSASSLSD 414
+Y I+++ + S Q+ D H + V SAS SD
Sbjct: 361 EYVSIQEVRVALDSVQQILDT-HAVPGVCSASVGSD 395
>UNIPROTKB|P06710 [details] [associations]
symbol:dnaX species:83333 "Escherichia coli K-12"
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IDA] [GO:0043846 "DNA
polymerase III, clamp loader complex" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0030337 "DNA polymerase
processivity factor activity" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] UniProt:P06710 InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR021029 InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170
PRINTS:PR00300 SMART:SM00382 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 EMBL:U82664 EMBL:X04487
EMBL:M38777 GO:GO:0003887 eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 EMBL:X04275 PIR:A25549 RefSeq:NP_415003.1
RefSeq:YP_488761.1 PDB:1JR3 PDB:1NJF PDB:1NJG PDB:1XXH PDB:1XXI
PDB:2AYA PDB:3GLF PDB:3GLG PDB:3GLH PDB:3GLI PDBsum:1JR3
PDBsum:1NJF PDBsum:1NJG PDBsum:1XXH PDBsum:1XXI PDBsum:2AYA
PDBsum:3GLF PDBsum:3GLG PDBsum:3GLH PDBsum:3GLI
ProteinModelPortal:P06710 SMR:P06710 DIP:DIP-9464N IntAct:P06710
MINT:MINT-1222776 PRIDE:P06710 EnsemblBacteria:EBESCT00000003686
EnsemblBacteria:EBESCT00000015762 GeneID:12930852 GeneID:945105
KEGG:ecj:Y75_p0457 KEGG:eco:b0470 PATRIC:32116097 EchoBASE:EB0241
EcoGene:EG10245 HOGENOM:HOG000083934 OMA:VQLYYQT
ProtClustDB:PRK07994 BioCyc:EcoCyc:EG10245-MONOMER
BioCyc:EcoCyc:MONOMER0-2383 BioCyc:ECOL316407:JW0459-MONOMER
BindingDB:P06710 EvolutionaryTrace:P06710 Genevestigator:P06710
GO:GO:0043846 GO:GO:0030337 InterPro:IPR022001 Pfam:PF12168
Length = 643
Score = 156 (60.0 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 58/237 (24%), Positives = 108/237 (45%)
Query: 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTS------------TMI 84
K+RP+T DV+ Q+ V++ L LS + H +LF G G GKTS T I
Sbjct: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68
Query: 85 AA--------CHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCP 136
A C ++ + + ++E++A+ ++ RD + A G
Sbjct: 69 TATPCGVCDNCREIEQGRFVD-LIEIDAASRTKVEDTRDLLDNVQYAPARG--------- 118
Query: 137 PFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPL 196
FK+ ++DE ++ + AL +T+E+ + +F L + + SRC +F K L
Sbjct: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178
Query: 197 AENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
+ +L++I +E + + +AL+ L + G +R A++ + G+G V+
Sbjct: 179 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA--IASGDGQVS 233
>TIGR_CMR|CHY_0329 [details] [associations]
symbol:CHY_0329 "ATP-dependent protease LonB"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004252 "serine-type endopeptidase activity" evidence=ISS]
[GO:0006508 "proteolysis" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0030436 "asexual sporulation"
evidence=ISS] InterPro:IPR002078 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008268 InterPro:IPR008269
InterPro:IPR027065 Pfam:PF00004 Pfam:PF05362 PROSITE:PS01046
PROSITE:PS50045 SMART:SM00382 GO:GO:0005524 GO:GO:0006355
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006508
GO:GO:0006351 GO:GO:0004252 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 InterPro:IPR025943
PROSITE:PS00676 GO:GO:0004176 eggNOG:COG1067 PANTHER:PTHR10046
RefSeq:YP_359192.1 ProteinModelPortal:Q3AF92 STRING:Q3AF92
GeneID:3728068 KEGG:chy:CHY_0329 PATRIC:21273827
HOGENOM:HOG000054711 KO:K04076 OMA:LYFWNLL ProtClustDB:CLSK873492
BioCyc:CHYD246194:GJCN-330-MONOMER InterPro:IPR014251
TIGRFAMs:TIGR02902 Uniprot:Q3AF92
Length = 547
Score = 117 (46.2 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
P EK RP+ ++I Q+E + LK L G + H + YGPPG GKT+
Sbjct: 59 PLAEKTRPENFSEIIGQEEGIEALKAALCGPNPQHVILYGPPGVGKTA 106
Score = 84 (34.6 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 30/91 (32%), Positives = 43/91 (47%)
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
L SRC + FKPL + + Q ++ + AL+T+V+ + R A+ +Q A
Sbjct: 256 LRSRCVEIFFKPLGDEEIREIAQNAAKKIGISLGKHALQTIVKYANSG-REAVNIVQLAA 314
Query: 244 RLKGGEG---IVNEDVLEVT---GVIPKPWI 268
L GEG I+ DVL V PKP I
Sbjct: 315 GLALGEGRKRILARDVLFVARAGNYHPKPQI 345
>POMBASE|SPBC23E6.07c [details] [associations]
symbol:rfc1 "DNA replication factor C complex subunit
Rfc1" species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IGI] [GO:0006272 "leading strand elongation" evidence=ISO]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0003689 "DNA clamp loader activity" evidence=IC]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357
PomBase:SPBC23E6.07c Pfam:PF00533 GO:GO:0005524 GO:GO:0005730
GO:GO:0051301 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0007049
GO:GO:0000790 GO:GO:0043596 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0003689 GO:GO:0031390 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389 KO:K10754
eggNOG:COG5275 EMBL:AB027931 PIR:T39941 RefSeq:NP_596607.1
ProteinModelPortal:O60182 IntAct:O60182 STRING:O60182
EnsemblFungi:SPBC23E6.07c.1 GeneID:2540426 KEGG:spo:SPBC23E6.07c
HOGENOM:HOG000164552 OMA:KLRMDER OrthoDB:EOG4WDHM8 NextBio:20801553
Uniprot:O60182
Length = 934
Score = 157 (60.3 bits), Expect = 8.5e-08, P = 8.5e-08
Identities = 57/212 (26%), Positives = 99/212 (46%)
Query: 70 LFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKV--KTFAQQTASG 127
L GPPG GKT+ A H L + +LELNASD R +++ +++ T +Q A
Sbjct: 413 LLSGPPGIGKTT----AAH-LVAKLEGYDVLELNASDTRSKRLLDEQLFGVTDSQSLAGY 467
Query: 128 FNQDGKPCPPFK---IVILDEADSMTHAAQAALRRT--MEKETKSTRFCLICN-YVSCII 181
F P K ++I+DE D M+ + + + + K++ C ICN +
Sbjct: 468 FGTKANPVDMAKSRLVLIMDEIDGMSSGDRGGVGQLNMIIKKSMIPIIC-ICNDRAHPKL 526
Query: 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ- 240
+PL RF+ N+M +R+ I +E + +A++ LV+ + DMR+ I L
Sbjct: 527 RPLDRTTFDLRFRRPDANSMRSRIMSIAYREGLKLSPQAVDQLVQGTQSDMRQIINLLST 586
Query: 241 ---SCARL--KGGEGIVNEDVLEVTGVIPKPW 267
SC+ + + + ++ + + KPW
Sbjct: 587 YKLSCSEMTPQNSQAVIKNSEKHI---VMKPW 615
>UNIPROTKB|Q0C591 [details] [associations]
symbol:dnaX "DNA polymerase III, subunits gamma and tau"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:CP000158 GenomeReviews:CP000158_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_759102.1 STRING:Q0C591 GeneID:4289739
KEGG:hne:HNE_0372 PATRIC:32213536 OMA:TCARIVS ProtClustDB:PRK09111
BioCyc:HNEP228405:GI69-416-MONOMER InterPro:IPR022107 Pfam:PF12362
Uniprot:Q0C591
Length = 578
Score = 114 (45.2 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 38/177 (21%), Positives = 77/177 (43%)
Query: 87 CHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
C + + + +LEL+A+ G+ +RD + + A+ G +K+ I+DE
Sbjct: 117 CDAIMASRHPD-VLELDAASRTGVADMRDLLDS-ARY--------GPVSARYKVYIIDEV 166
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
+++A+ AL +T+E+ +F + + + SRC +F K L + L
Sbjct: 167 HMLSNASFNALLKTLEEPPPHLKFIFATTEIRKVPVTVLSRCQRFDLKRLDSGELSRHLG 226
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCL-QSCARLKGGEGIVNEDVLEVTGV 262
+ + E +AL + + G +R ++ L Q + GE + V + G+
Sbjct: 227 NVAQSEGANVSEEALALIARAAEGSVRDGLSLLDQGIVQTTDGEEVSGAAVRAMLGL 283
Score = 82 (33.9 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTST 82
KYRP+ +D+I Q+ +V L + H F+ G G GKT+T
Sbjct: 35 KYRPRRFEDLIGQEAMVRTLSNAFETGRIAHGFMLTGVRGVGKTTT 80
Score = 40 (19.1 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 311 LSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGE--GIVNEDVLEVTGVI 364
L D+ + L A+E V GGD + A+ ++ ++ GG ++ +D+L++ I
Sbjct: 283 LGDRAR-LLDAVEKAV---GGDAKGALAEVRE--QVAGGADPAVILKDILDIAADI 332
>TIGR_CMR|CHY_2201 [details] [associations]
symbol:CHY_2201 "ATPase, AAA family" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0019538 "protein metabolic process"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0017111 eggNOG:COG2256 KO:K07478 ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 OMA:FEVIAPL RefSeq:YP_361014.1
ProteinModelPortal:Q3AA20 STRING:Q3AA20 GeneID:3726481
KEGG:chy:CHY_2201 PATRIC:21277469 HOGENOM:HOG000017624
BioCyc:CHYD246194:GJCN-2200-MONOMER Uniprot:Q3AA20
Length = 444
Score = 146 (56.5 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 57/221 (25%), Positives = 101/221 (45%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVS---VLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
NK P + RP+++D+ I Q+ ++ +L++ + L +FYGPPGTGKT+ +A
Sbjct: 12 NKEAPLAYRMRPRSLDEFIGQEHILGEGKLLRRAILSDRLGSLIFYGPPGTGKTT--LA- 68
Query: 87 CHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
++ + +NA G+ IR+ +K A++ + + ++ +DE
Sbjct: 69 --RIIASTTKSGFESINAVTS-GVGEIREVIKK-AKEREKYYGER-------TVLFIDEI 117
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA-ENTMLTRL 205
A Q AL +E T N + PL SR F FKPL E+
Sbjct: 118 HRFNKAQQDALLPEVEAGTIVLIGATTENPYFEVNAPLLSRSRIFEFKPLEPEHIREIVR 177
Query: 206 QYICEQESVMCDFK------ALETLVETSGGDMRRAITCLQ 240
+ + ++E + ++K AL+ LV + GD R A+ ++
Sbjct: 178 RALVDKERGLGEYKVEISEEALDHLVTMAAGDARAALNGIE 218
>TIGR_CMR|APH_1348 [details] [associations]
symbol:APH_1348 "DNA polymerase III, subunits gamma and
tau" species:212042 "Anaplasma phagocytophilum HZ" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 OMA:TCARIVS ProtClustDB:PRK14964
RefSeq:YP_505851.1 ProteinModelPortal:Q2GIF0 STRING:Q2GIF0
GeneID:3930792 KEGG:aph:APH_1348 PATRIC:20951496
BioCyc:APHA212042:GHPM-1348-MONOMER Uniprot:Q2GIF0
Length = 456
Score = 146 (56.5 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 56/256 (21%), Positives = 110/256 (42%)
Query: 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADL-PHFLFYGPPGTGKTST--MIAACHQL---- 90
KYRP DD++ Q +V +L+ S +L L G G GKT+ +++ C
Sbjct: 6 KYRPSNFDDLVGQDVLVRILRNSFSVGNLNTPLLMVGASGVGKTTCARIVSLCLNCENGP 65
Query: 91 -------------FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
+ + ++E++A+ + + IR +++ S
Sbjct: 66 TSSPCGTCATCTSIKNSHNPDVVEMDAASNTSVDDIRVILESSNYLPVSS---------R 116
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
FK+ I+DE ++ +A AL +T+E + +F + V + + SRC + L
Sbjct: 117 FKVYIIDEVHMLSTSAFNALLKTLESPAQHAKFIMATTEVRKVPVTVASRCLRLDLGKLP 176
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
+ L I +E++ D +L + E S G +R ++ L+ A + I ++V
Sbjct: 177 IKQLYDHLVKISAKENIAHDESSLMLIAENSSGSVRNSLFLLEQ-ALIYSNNKISLQEVR 235
Query: 258 EVTGVIPKPWIEKLLK 273
E+ G + K +E +++
Sbjct: 236 ELLGCVDKKILEGIVR 251
>TIGR_CMR|CPS_2757 [details] [associations]
symbol:CPS_2757 "ATPase, AAA family" species:167879
"Colwellia psychrerythraea 34H" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008824 Pfam:PF05496 SMART:SM00382
GO:GO:0000166 GO:GO:0006281 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0006310 GO:GO:0009378 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342 InterPro:IPR021886
Pfam:PF12002 RefSeq:YP_269469.1 ProteinModelPortal:Q480Q0
SMR:Q480Q0 STRING:Q480Q0 GeneID:3522496 KEGG:cps:CPS_2757
PATRIC:21468551 BioCyc:CPSY167879:GI48-2818-MONOMER Uniprot:Q480Q0
Length = 511
Score = 146 (56.5 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 59/220 (26%), Positives = 97/220 (44%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVV---SVLKKCLSGADLPHFLFYGPPGTGKTSTM-IAACH 88
+P K RPKT+ D + QQ ++ S L + + +F+GPPG+GKT+ I A H
Sbjct: 57 MPLAAKMRPKTLADYVGQQHILGGDSPLAQSIEQGHCHSLIFWGPPGSGKTTLAEIIAQH 116
Query: 89 QLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148
+ ER+ + + GI+ IR ++ A+ A G + + ++ +DE
Sbjct: 117 ---ANAEIERVSAVTS----GIKEIRSAIEK-AKLRAQGEGANKRRT----VLFVDEVHR 164
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY- 207
+ Q A +E T N + Q L SR + K L + + LQ
Sbjct: 165 FNKSQQDAFLPHIEDGTIIFIGATTENPAFELNQALLSRARLYTLKKLTRDDLAQVLQRA 224
Query: 208 --ICEQE---SVMCDFKALETLVETSGGDMRRAITCLQSC 242
+CE E S+ A ++L+ S GD RR + L++C
Sbjct: 225 ISLCEAEQQLSIKLSVDAKQSLLNRSDGDARRLLNLLENC 264
>DICTYBASE|DDB_G0285961 [details] [associations]
symbol:rfc1 "replication factor C subunit 1"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 dictyBase:DDB_G0285961
Pfam:PF00533 GO:GO:0005524 GO:GO:0005634 GenomeReviews:CM000153_GR
GO:GO:0006355 GO:GO:0006351 GO:GO:0006298 EMBL:AAFI02000082
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 HSSP:P38630
GO:GO:0003689 eggNOG:COG0272 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 RefSeq:XP_638011.1 ProteinModelPortal:Q54MH9
STRING:Q54MH9 EnsemblProtists:DDB0232230 GeneID:8625362
KEGG:ddi:DDB_G0285961 KO:K10754 OMA:IIELSTW Uniprot:Q54MH9
Length = 1401
Score = 148 (57.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 66/247 (26%), Positives = 106/247 (42%)
Query: 70 LFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGF 128
L GPPG GKTS + C Q + +ELNASD R I+ + + Q + F
Sbjct: 895 LLSGPPGIGKTSAALLICKQKGFEA-----IELNASDARSKSEIKRLLSGVSDNQNITKF 949
Query: 129 ----NQD-GKPCPPFK----IVILDEAD-SMTHAAQAALRRTME--KETKSTRFCLICNY 176
NQD GK K +ILDE D S ++ + + + K++K CL +Y
Sbjct: 950 FGTTNQDTGKDVQANKKIKTAIILDEIDGSSGNSDRGGIAEIIGLIKKSKMPFICLCNDY 1009
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
S + L + C + + N + +RL I + E + +E + +S D+R++I
Sbjct: 1010 YSSKVTSLRNHCMDLKLRKPTLNQVSSRLLAIAKHEGMKVSSYMIEKVYTSSHSDIRQSI 1069
Query: 237 TCLQSCARLKG--GEGIVNEDVLEVT-GVIPKPWIEKLLKVDSFQVLEKYIEDLILEAYS 293
LQ +R K V + + E + P E +L+ D+ + +K D +S
Sbjct: 1070 NTLQMMSRSKRDYNNDNVTQSLQEKDFDISPFTAAELILREDNSNINKKL--DYFFSDFS 1127
Query: 294 ATQLFDQ 300
L Q
Sbjct: 1128 LVPLIIQ 1134
Score = 123 (48.4 bits), Expect = 0.00070, P = 0.00070
Identities = 51/162 (31%), Positives = 70/162 (43%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLS--GADLPH-------FLFYGPPGTGKTSTMIA 85
WVEKYRPK I+D++ + K L + P L GPPG GKTS +
Sbjct: 851 WVEKYRPKVIEDIVGNPGIFQEFGKWLDQWNSTAPRDASKKNAVLLSGPPGIGKTSAALL 910
Query: 86 ACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGF----NQD-GKPCPPFK 139
C Q + +ELNASD R I+ + + Q + F NQD GK K
Sbjct: 911 ICKQKGFEA-----IELNASDARSKSEIKRLLSGVSDNQNITKFFGTTNQDTGKDVQANK 965
Query: 140 ----IVILDEAD-SMTHAAQAALRRTMEKETKSTR-FCLICN 175
+ILDE D S ++ + + + KS F +CN
Sbjct: 966 KIKTAIILDEIDGSSGNSDRGGIAEIIGLIKKSKMPFICLCN 1007
>TIGR_CMR|SPO_3550 [details] [associations]
symbol:SPO_3550 "DNA polymerase III, gamma and tau
subunits" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
ProtClustDB:PRK09111 InterPro:IPR022107 Pfam:PF12362
RefSeq:YP_168745.1 ProteinModelPortal:Q5LML3 GeneID:3193201
KEGG:sil:SPO3550 PATRIC:23380573 OMA:FTHLVTR Uniprot:Q5LML3
Length = 583
Score = 142 (55.0 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 56/237 (23%), Positives = 97/237 (40%)
Query: 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTST--MIAA-------- 86
KYRP+T D++ Q +V LK + + F+ G GTGKT+T +IA
Sbjct: 15 KYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNCIGPD 74
Query: 87 ------------CHQLFGDMYRERI--LELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
C M + +E++A+ G+ IR+ + + + AS
Sbjct: 75 GNGGPTTEPCGKCEHCVAIMEGRHVDVMEMDAASRTGVNDIREIIDSVRYRAASA----- 129
Query: 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
+KI I+DE ++ +A AL +T+E+ +F + + + SRC +F
Sbjct: 130 ----RYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFD 185
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
+ + M+ ++ I + E AL +V + G R A + L GE
Sbjct: 186 LRRIEPEDMIALMRRIADAEGAQIAEDALALIVRAAEGSARDATSLLDQAISHGAGE 242
>RGD|620619 [details] [associations]
symbol:Rfc1 "replication factor C (activator 1) 1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005663 "DNA replication factor C complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0019904 "protein domain specific
binding" evidence=IPI] [GO:0043234 "protein complex" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 RGD:620619 GO:GO:0005524
GO:GO:0005737 GO:GO:0045893 GO:GO:0043234 GO:GO:0005730
GO:GO:0006260 GO:GO:0043565 GO:GO:0000122 GO:GO:0003690
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
HSSP:P26996 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 CTD:5981
HOVERGEN:HBG004167 EMBL:AF030050 IPI:IPI00210191 RefSeq:NP_445999.1
UniGene:Rn.103272 ProteinModelPortal:Q9Z2R7 STRING:Q9Z2R7
GeneID:89809 KEGG:rno:89809 UCSC:RGD:620619 NextBio:617672
Genevestigator:Q9Z2R7 Uniprot:Q9Z2R7
Length = 1104
Score = 133 (51.9 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 82/340 (24%), Positives = 137/340 (40%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
NK + W+ + K+ + + + V K G+ L GPPG GKT+T C +
Sbjct: 593 NKLLRWLRNWH-KSSPEEKKHAKFGKVASKD-DGSSFKAALLSGPPGVGKTTTASLVCQE 650
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTA-SGFNQDG-KPCPPFK-IVILDEA 146
L G Y +ELNASD R ++ V T+ GF G P + +I+DE
Sbjct: 651 L-GYSY----VELNASDTRSKNSLKAIVAESLNNTSIKGFYTSGASPSVSARHALIMDEV 705
Query: 147 DSMT-HAAQAALRRTME--KETKSTRFCLICNYVSCI-IQPLTSRCSKFRF-KPLAENTM 201
D M + + ++ + K TK C+ CN + I+ L C RF +P E
Sbjct: 706 DGMAGNEDRGGIQELIGLIKHTKIPIICM-CNDRNHPKIRSLVHYCFDLRFQRPRVEQIK 764
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS-CARLKGGEGIVNEDVLEVT 260
L I +E + A+ ++ + D+R+ + L CA+ K ++ D +
Sbjct: 765 SAMLS-IAFKEGLKIPPPAMNEIILGANQDVRQVLHNLSMWCAQSK----VLTYDQAKAD 819
Query: 261 GVIPKPWIEKLLKVDSFQVLEKYI----EDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
K K +++ F V K E + + LF FHD + + +
Sbjct: 820 SQRAK----KDIRLGPFDVTRKVFAAGEETPHMSLMDKSDLF--FHDYSIAPLFVQENY- 872
Query: 317 ALFKALETLVETSGGDMRRAITCLQSCA-RLKGGEGIVNE 355
L +GGDM++ + L A + G+ + N+
Sbjct: 873 -----LHVKPVAAGGDMKKHLMLLSRAADSICDGDLVANQ 907
Score = 59 (25.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCL 61
R + + WV+KY+P ++ ++I QQ S K L
Sbjct: 564 REECLLWVDKYKPTSLKNIIGQQGDQSCANKLL 596
>POMBASE|SPBC902.02c [details] [associations]
symbol:ctf18 "RFC-like complex subunit Ctf18"
species:4896 "Schizosaccharomyces pombe" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005657
"replication fork" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=IC] [GO:0045132 "meiotic
chromosome segregation" evidence=IMP] [GO:0051455 "attachment of
spindle microtubules to kinetochore involved in homologous
chromosome segregation" evidence=IMP] [GO:0003689 "DNA clamp loader
activity" evidence=TAS] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 PomBase:SPBC902.02c GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0017111
eggNOG:COG0470 GO:GO:0005657 GO:GO:0051455 KO:K11269 EMBL:AB027926
PIR:T50383 RefSeq:NP_595200.1 ProteinModelPortal:Q9USQ1
STRING:Q9USQ1 EnsemblFungi:SPBC902.02c.1 GeneID:2541270
KEGG:spo:SPBC902.02c OrthoDB:EOG4HDX3F NextBio:20802382
GO:GO:0031390 GO:GO:0007062 Uniprot:Q9USQ1
Length = 960
Score = 143 (55.4 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 53/196 (27%), Positives = 88/196 (44%)
Query: 62 SGADLPH---FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVK 118
S +D P + G G GKT+ HQ G Y+ +LE+NASDDR + +KV
Sbjct: 409 SDSDRPDKRIMMLTGLAGAGKTTLAHVIAHQA-G--YK--VLEINASDDRTAHTVHEKVS 463
Query: 119 TFAQQTASGFNQ---------DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTR 169
+ ++ +Q DG P F +L +S A + + +K+ K +
Sbjct: 464 SAISNHSALSSQPTCVIVDEIDGGD-PAFVRALLSLLESDEKATEYSQAGNSKKKKKFKK 522
Query: 170 FC----LICNYV-SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETL 224
C ICN + + ++PL F+P + +++ RL+ IC E++ D ++L L
Sbjct: 523 LCRPIICICNDLYTPALRPLRPYAQIIYFRPPPQASLVGRLRTICRNENIAVDSRSLTLL 582
Query: 225 VETSGGDMRRAITCLQ 240
+ D+R I LQ
Sbjct: 583 TDIYNSDIRSCINSLQ 598
Score = 46 (21.3 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 35 WVEKYRPKTIDDVIEQQEV 53
WV+ YRP+ D++ + V
Sbjct: 353 WVDTYRPQLFRDLLGDERV 371
>ASPGD|ASPL0000029025 [details] [associations]
symbol:AN5617 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AACD01000098 EMBL:BN001305 GO:GO:0017111
eggNOG:COG2256 HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF
InterPro:IPR021886 Pfam:PF12002 OrthoDB:EOG4Z924S
RefSeq:XP_663221.1 ProteinModelPortal:Q5B1G3 STRING:Q5B1G3
EnsemblFungi:CADANIAT00003453 GeneID:2871909 KEGG:ani:AN5617.2
Uniprot:Q5B1G3
Length = 528
Score = 133 (51.9 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 57/234 (24%), Positives = 97/234 (41%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEV--VSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
+ P E+ RP+T+D+V Q+ V VL+ + +P + +G PGTGKT+ IA
Sbjct: 113 RAAPLAERMRPRTLDEVCGQELVGPTGVLRGLIEEDRVPSMILWGGPGTGKTT--IA--- 167
Query: 89 QLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148
++ M R +E+N S G+ + K FA S G+ I+ DE
Sbjct: 168 RVIASMVGSRFVEIN-STSTGVAECK---KIFAD-AKSELGLTGRKT----IIFCDEIHR 218
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
+ + Q +E + N + L SRC F L + + + L
Sbjct: 219 FSKSQQDVFLGPVESGQVTLIGATTENPSFKVQNALLSRCRTFTLSKLTDEDIRSILNRA 278
Query: 209 CEQE------SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDV 256
+ E S + D + L+ L + + GD R ++ L+ L GI +++
Sbjct: 279 LKTEGPNYSPSALVDDELLDYLAKFADGDARTSLNLLELGMNLSKRPGISKDEI 332
>FB|FBgn0015376 [details] [associations]
symbol:cutlet "cutlet" species:7227 "Drosophila melanogaster"
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0006260 "DNA replication"
evidence=ISS;NAS] [GO:0003677 "DNA binding" evidence=NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0008283
GO:GO:0017111 eggNOG:COG0470 KO:K11269 GeneTree:ENSGT00550000075029
RefSeq:NP_787969.1 ProteinModelPortal:Q8IQ05 SMR:Q8IQ05
STRING:Q8IQ05 PaxDb:Q8IQ05 EnsemblMetazoa:FBtr0077541 GeneID:44637
KEGG:dme:Dmel_CG33122 UCSC:CG33122-RA CTD:44637 FlyBase:FBgn0015376
InParanoid:Q8IQ05 OMA:KRPNCIV OrthoDB:EOG44F4RB PhylomeDB:Q8IQ05
GenomeRNAi:44637 NextBio:837492 ArrayExpress:Q8IQ05 Bgee:Q8IQ05
Uniprot:Q8IQ05
Length = 993
Score = 135 (52.6 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 55/187 (29%), Positives = 81/187 (43%)
Query: 70 LFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN 129
L GPPG GKT T+ + G Y R E+NASDDR + + ++ Q +S N
Sbjct: 424 LLCGPPGLGKT-TLAHTIARHAG--YNVR--EINASDDRSPEAFKLALEN-GTQMSSVLN 477
Query: 130 QDGKPCPPFKIVILDEADS---------MTHAAQAALRRTMEKETKSTRFCL------IC 174
+D +P ++LDE D + + A + K K+ L IC
Sbjct: 478 EDKRP----NCIVLDEIDGAPRQSIDYLVKFISDAVYTKVKAKGAKAEHNVLKRPIICIC 533
Query: 175 NYV-SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR 233
N V ++PL F P+ + RL I +E + DF +L L E SG D+R
Sbjct: 534 NDVYDPALRPLRQVAFVVTFPPIDAARLAERLVKIAFKEQLKTDFGSLIALAEKSGNDVR 593
Query: 234 RAITCLQ 240
I+ +Q
Sbjct: 594 SCISSMQ 600
Score = 46 (21.3 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 35 WVEKYRPKTIDDVIEQQ 51
WV+KY+P+ D++ +
Sbjct: 322 WVDKYKPRKYIDLLSDE 338
>TIGR_CMR|BA_4628 [details] [associations]
symbol:BA_4628 "ATPase, AAA family" species:198094
"Bacillus anthracis str. Ames" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0017111 KO:K07478
ProtClustDB:PRK13342 InterPro:IPR021886 Pfam:PF12002
HOGENOM:HOG000017624 OMA:RLLVIAY RefSeq:NP_846846.1
RefSeq:YP_021276.1 RefSeq:YP_030542.1 ProteinModelPortal:Q81LJ0
SMR:Q81LJ0 DNASU:1085339 EnsemblBacteria:EBBACT00000011786
EnsemblBacteria:EBBACT00000016240 EnsemblBacteria:EBBACT00000022391
GeneID:1085339 GeneID:2814872 GeneID:2851063 KEGG:ban:BA_4628
KEGG:bar:GBAA_4628 KEGG:bat:BAS4294
BioCyc:BANT260799:GJAJ-4350-MONOMER
BioCyc:BANT261594:GJ7F-4499-MONOMER Uniprot:Q81LJ0
Length = 428
Score = 94 (38.1 bits), Expect = 3.5e-05, Sum P(3) = 3.5e-05
Identities = 26/88 (29%), Positives = 41/88 (46%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVS---VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
P + RP I +VI QQ +V +L + + + YGPPGTGKTS A
Sbjct: 4 PLAHRMRPTNIQEVIGQQHLVGEGKILWRMVQANHFQSMILYGPPGTGKTSIASAIAGST 63
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVK 118
G +R +L + + ++V+ + K
Sbjct: 64 -GTPFR--LLNAVTHNKKDMEVVVQEAK 88
Score = 80 (33.2 bits), Expect = 3.5e-05, Sum P(3) = 3.5e-05
Identities = 30/108 (27%), Positives = 44/108 (40%)
Query: 140 IVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAEN 199
++ILDE + A Q L +E + N I + SRC F L E
Sbjct: 94 VLILDEVHRLDKAKQDFLLPHLESGLLTLIGATTSNPFHAINSAIRSRCQIFELHALTEE 153
Query: 200 TMLTRLQYICE-QESVMCDF------KALETLVETSGGDMRRAITCLQ 240
+L L+ E +E + ++ +AL SGGDMR A L+
Sbjct: 154 DLLIGLKRALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALE 201
Score = 37 (18.1 bits), Expect = 3.5e-05, Sum P(3) = 3.5e-05
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 392 AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 427
AY+A +L V+S+ + DK + LE EC
Sbjct: 196 AYNALEL------AVLSSFTTDDKAAEITLEIAEEC 225
>DICTYBASE|DDB_G0272158 [details] [associations]
symbol:wrnip1 "putative Werner helicase-interacting
protein 1" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0009378
"four-way junction helicase activity" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR008824
Pfam:PF05496 SMART:SM00382 dictyBase:DDB_G0272158 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0006260 GO:GO:0006281
GenomeReviews:CM000151_GR GO:GO:0006310 EMBL:AAFI02000008
GO:GO:0009378 eggNOG:COG2256 InterPro:IPR021886 Pfam:PF12002
RefSeq:XP_645251.1 ProteinModelPortal:Q75JU2 STRING:Q75JU2
EnsemblProtists:DDB0305118 GeneID:8618418 KEGG:ddi:DDB_G0272158
InParanoid:Q75JU2 Uniprot:Q75JU2
Length = 876
Score = 132 (51.5 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 60/234 (25%), Positives = 98/234 (41%)
Query: 34 PWVEKYRPKTIDDVIEQQEVV---SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
P E+ RP + D I Q+ ++ ++KK +LP F+ YGPPG GKT+ +A Q+
Sbjct: 196 PLSEQMRPTELSDFIGQESLLVGDPIVKKLFQSPELPSFILYGPPGCGKTT--LA---QI 250
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
I L+A G++ I++ + A+ T Q GK I+ +DE
Sbjct: 251 VASKSNYNINALSAVGS-GVKDIKEVIDK-ARNTL----QFGKKT----ILFIDEIHRYN 300
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
Q L +E N + L SRC F+ + L + + T ++ E
Sbjct: 301 KLQQDVLLPAIESGIIILIGATTENPSFELNGALLSRCKVFKMEKLTKENLETLIKRTLE 360
Query: 211 QESVMCDFK------ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 258
++ D + A+++L E + GD R AI L + E E + E
Sbjct: 361 VTPLLMDRRLIMDEDAIKSLAEIADGDARVAINVLDMAIKANKEEQTYKERMEE 414
>UNIPROTKB|F1S4I7 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0005634
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GQINFPG EMBL:FP089679 Ensembl:ENSSSCT00000009614
Uniprot:F1S4I7
Length = 1146
Score = 132 (51.5 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 58/226 (25%), Positives = 95/226 (42%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
NK + W++ + +D + K G+ L GPPG GKT+T C +
Sbjct: 608 NKLLRWLQNWHKSPSEDKKRAAKFGKFAGKD-DGSSFKAALLSGPPGVGKTTTASLVCQE 666
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTA-SGFNQDGKP--CPPFKIVILDEA 146
L G Y +ELNASD R +++ + T+ GF G +I+DE
Sbjct: 667 L-GYSY----VELNASDTRSKNSLKEIIAESLNNTSIKGFYSSGAAHSVSTKHALIMDEV 721
Query: 147 DSMT-HAAQAALRRTME--KETKSTRFCLICNYVSCI-IQPLTSRCSKFRF-KPLAENTM 201
D M + + ++ + K TK C+ CN + I+ L C RF +P E +
Sbjct: 722 DGMAGNEDRGGIQELIGLIKHTKIPIICM-CNDRNHPKIRSLVHYCFDLRFQRPRVEQ-I 779
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS-CARLK 246
+ I +E + A+ ++ + D+R+ + L CAR K
Sbjct: 780 KGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSK 825
>MGI|MGI:97891 [details] [associations]
symbol:Rfc1 "replication factor C (activator 1) 1"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005663 "DNA replication factor C
complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0043234 "protein complex" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 MGI:MGI:97891 Pfam:PF00533 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0006260 GO:GO:0006351
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 eggNOG:COG5275 CTD:5981
HOVERGEN:HBG004167 OrthoDB:EOG4D26P3 ChiTaRS:RFC1 EMBL:U01222
EMBL:X72711 EMBL:U36441 EMBL:U07157 EMBL:U15037 IPI:IPI00378168
IPI:IPI00896013 PIR:A49393 RefSeq:NP_035388.2 UniGene:Mm.148877
ProteinModelPortal:P35601 SMR:P35601 STRING:P35601
PhosphoSite:P35601 PaxDb:P35601 PRIDE:P35601 GeneID:19687
KEGG:mmu:19687 UCSC:uc008xni.2 UCSC:uc008xnj.2 InParanoid:P35601
NextBio:297020 CleanEx:MM_RFC1 Genevestigator:P35601
GermOnline:ENSMUSG00000029191 Uniprot:P35601
Length = 1131
Score = 131 (51.2 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 59/226 (26%), Positives = 96/226 (42%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
NK + W+ + + ++ + + K G+ L GPPG GKT+T C +
Sbjct: 593 NKLLRWLRNWHKSSPEEKKHAAKFGKLASKD-DGSSFKAALLSGPPGVGKTTTASLVCQE 651
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTA-SGFNQDGK-PCPPFK-IVILDEA 146
L G Y +ELNASD R ++ V T+ GF G P + +I+DE
Sbjct: 652 L-GYSY----VELNASDTRSKNSLKAVVAESLNNTSIKGFYTSGAAPSVSARHALIMDEV 706
Query: 147 DSMT-HAAQAALRRTME--KETKSTRFCLICNYVSCI-IQPLTSRCSKFRF-KPLAENTM 201
D M + + ++ + K TK C+ CN + I+ L C RF +P E
Sbjct: 707 DGMAGNEDRGGIQELIGLIKHTKIPIICM-CNDRNHPKIRSLVHYCFDLRFQRPRVEQIK 765
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS-CARLK 246
L I +E + A+ ++ + D+R+ + L CA+ K
Sbjct: 766 SAMLS-IAFKEGLKIPPPAMNEIILGANQDVRQVLHNLSMWCAQSK 810
>UNIPROTKB|P35251 [details] [associations]
symbol:RFC1 "Replication factor C subunit 1" species:9606
"Homo sapiens" [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0006261
"DNA-dependent DNA replication" evidence=TAS] [GO:0007004 "telomere
maintenance via telomerase" evidence=TAS] [GO:0008047 "enzyme
activator activity" evidence=TAS] [GO:0000084 "S phase of mitotic
cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0043085 "positive regulation of
catalytic activity" evidence=TAS] Reactome:REACT_216
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0006355
GO:GO:0006351 GO:GO:0008047 GO:GO:0000084 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 EMBL:CH471069 GO:GO:0007004
GO:GO:0000722 Pathway_Interaction_DB:faspathway Reactome:REACT_383
GO:GO:0006283 GO:GO:0003689 GO:GO:0006271 GO:GO:0032201
GO:GO:0006297 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754
eggNOG:COG5275 EMBL:L23320 EMBL:Z22642 EMBL:AF040250 EMBL:AY600371
EMBL:AK291612 EMBL:BC035297 EMBL:BC051751 EMBL:BC051786
IPI:IPI00375358 IPI:IPI00375359 PIR:A49651 PIR:JN0599
RefSeq:NP_001191676.1 RefSeq:NP_002904.3 UniGene:Hs.507475 PDB:2EBU
PDB:2K6G PDB:2K7F PDBsum:2EBU PDBsum:2K6G PDBsum:2K7F
ProteinModelPortal:P35251 SMR:P35251 IntAct:P35251 STRING:P35251
PhosphoSite:P35251 DMDM:56757608 PaxDb:P35251 PRIDE:P35251
DNASU:5981 Ensembl:ENST00000349703 Ensembl:ENST00000381897
GeneID:5981 KEGG:hsa:5981 UCSC:uc003gtx.2 UCSC:uc003gty.2 CTD:5981
GeneCards:GC04M039291 HGNC:HGNC:9969 HPA:CAB009520 MIM:102579
neXtProt:NX_P35251 PharmGKB:PA34338 HOGENOM:HOG000013116
HOVERGEN:HBG004167 InParanoid:P35251 OMA:GQINFPG OrthoDB:EOG4D26P3
ChiTaRS:RFC1 EvolutionaryTrace:P35251 GenomeRNAi:5981 NextBio:23281
PMAP-CutDB:P35251 ArrayExpress:P35251 Bgee:P35251 CleanEx:HS_RFC1
Genevestigator:P35251 GermOnline:ENSG00000035928 Uniprot:P35251
Length = 1148
Score = 131 (51.2 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 59/226 (26%), Positives = 96/226 (42%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
NK + W+ ++ + +D + K G+ L GPPG GKT+T C +
Sbjct: 609 NKLLRWLRNWQKSSSEDKKHAAKFGKFSGKD-DGSSFKAALLSGPPGVGKTTTASLVCQE 667
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTA-SGFNQDG--KPCPPFKIVILDEA 146
L G Y +ELNASD R ++ V T+ GF +G +I+DE
Sbjct: 668 L-GYSY----VELNASDTRSKSSLKAIVAESLNNTSIKGFYSNGAASSVSTKHALIMDEV 722
Query: 147 DSMT-HAAQAALRRTME--KETKSTRFCLICNYVSCI-IQPLTSRCSKFRF-KPLAENTM 201
D M + + ++ + K TK C+ CN + I+ L C RF +P E +
Sbjct: 723 DGMAGNEDRGGIQELIGLIKHTKIPIICM-CNDRNHPKIRSLVHYCFDLRFQRPRVEQ-I 780
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS-CARLK 246
+ I +E + A+ ++ + D+R+ + L CAR K
Sbjct: 781 KGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSK 826
>DICTYBASE|DDB_G0272758 [details] [associations]
symbol:chtf18 "chromosome transmission fidelity
protein 18 homolog" species:44689 "Dictyostelium discoideum"
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 dictyBase:DDB_G0272758 GO:GO:0005524
EMBL:AAFI02000008 GO:GO:0017111 eggNOG:COG0470 KO:K11269
RefSeq:XP_001134625.1 ProteinModelPortal:Q86L47
EnsemblProtists:DDB0232234 GeneID:8618623 KEGG:ddi:DDB_G0272758
InParanoid:Q86L47 OMA:QPEGESM ProtClustDB:CLSZ2497422
Uniprot:Q86L47
Length = 937
Score = 101 (40.6 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 25/88 (28%), Positives = 45/88 (51%)
Query: 173 ICN--YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG 230
ICN YV + + L + F F+ +N +L+RL+ IC E + L L++ +G
Sbjct: 441 ICNDQYVPSL-RKLRQKAMVFDFQAPKKNDLLSRLKVICSNEGLSATDATLNALIDMTGS 499
Query: 231 DMRRAITCLQSCARLKGGEGIVNEDVLE 258
D+R C+ S +K ++N ++L+
Sbjct: 500 DIR---ACINSLQFIKSKTTVLNSELLK 524
Score = 72 (30.4 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 27/81 (33%), Positives = 39/81 (48%)
Query: 70 LFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN 129
L G PG GKT+ Q Y +E+NAS+DR + K+ + A + S FN
Sbjct: 282 LLTGGPGLGKTTLAHVLAKQA---NYNP--VEINASEDRSGEAFESKLLS-AIEMKSLFN 335
Query: 130 QDGKPCPPFKIVILDEADSMT 150
D KP +I+DE D ++
Sbjct: 336 -DNKP----NCLIIDEIDGIS 351
Score = 43 (20.2 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 35 WVEKYRPKTIDDVI 48
WV+KY P + D++
Sbjct: 164 WVDKYAPTSFHDLL 177
>ASPGD|ASPL0000007447 [details] [associations]
symbol:uvsF species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IMP] [GO:0005663 "DNA replication
factor C complex" evidence=ISA] [GO:0006260 "DNA replication"
evidence=ISA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031391 "Elg1
RFC-like complex" evidence=IEA] [GO:0003689 "DNA clamp loader
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0006260 EMBL:AACD01000107 EMBL:BN001301
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 HOGENOM:HOG000164552
OrthoDB:EOG4WDHM8 RefSeq:XP_663907.1 ProteinModelPortal:Q5AZH7
STRING:Q5AZH7 EnsemblFungi:CADANIAT00006686 GeneID:2871090
KEGG:ani:AN6303.2 OMA:PKMKPFD Uniprot:Q5AZH7
Length = 1092
Score = 126 (49.4 bits), Expect = 0.00025, P = 0.00025
Identities = 53/189 (28%), Positives = 85/189 (44%)
Query: 70 LFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTA-SG- 127
+ +GPPG GKT+ A H L + ++E NASD R +++ + T+ G
Sbjct: 523 MIHGPPGIGKTT----AAH-LVAKLEGYDVVESNASDTRSKKLVESGLLGVLDTTSLQGY 577
Query: 128 FNQDGKPCPPFK---IVILDEADSMTHAAQAALRRTMEKETKSTRF--CLICNYVSCI-I 181
F+ K K ++I+DE D M+ + + M K T+ LICN +
Sbjct: 578 FSTSNKKVESGKKNLVLIMDEVDGMSAGDRGGVG-AMAAIAKKTQIPLILICNERRLPKM 636
Query: 182 QPLTSRCSKFRFK-PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
+P + F+ P E RL IC +E + + L++L+E + D+R+ I L
Sbjct: 637 KPFDHVTFEIPFRRPTVEQVR-ARLLTICFREKMKIPPQVLDSLIEGTHADIRQVINML- 694
Query: 241 SCARLKGGE 249
S RL E
Sbjct: 695 SAVRLDRSE 703
>UNIPROTKB|Q71ZF6 [details] [associations]
symbol:LMOf2365_1533 "ATPase, AAA family domain protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003593
InterPro:IPR008824 Pfam:PF05496 SMART:SM00382 GO:GO:0000166
GO:GO:0006281 GO:GO:0006310 EMBL:AE017262 GenomeReviews:AE017262_GR
GO:GO:0009378 eggNOG:COG2256 KO:K07478 ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 HOGENOM:HOG000017624 OMA:RLLVIAY
RefSeq:YP_014131.1 ProteinModelPortal:Q71ZF6 SMR:Q71ZF6
STRING:Q71ZF6 DNASU:2797899 GeneID:2797899 KEGG:lmf:LMOf2365_1533
PATRIC:20324305 Uniprot:Q71ZF6
Length = 427
Score = 96 (38.9 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 25/89 (28%), Positives = 45/89 (50%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVS---VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
P + RPK +D+++ Q +V ++ + + L + YGPPG GKTS IA+ +
Sbjct: 5 PLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQLSSMILYGPPGIGKTS--IASA--I 60
Query: 91 FGDM-YRERILELNASDDRGIQVIRDKVK 118
G Y R L ++ + ++V+ + K
Sbjct: 61 AGSTKYAFRTLNAVTNNKKDMEVVAAEAK 89
Score = 68 (29.0 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 36/139 (25%), Positives = 58/139 (41%)
Query: 140 IVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA-E 198
I++LDE + A Q L +E N I + SR F KPL E
Sbjct: 95 ILLLDEVHRLDKAKQDFLLPLLESGAIILIGATTSNPYIAINPAIRSRTQIFELKPLTVE 154
Query: 199 NTMLTRLQYICEQE------SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
+ M+T + + ++E V D A + S GD+R A+ L+ + E
Sbjct: 155 DIMITMDRALSDKERGLGNYDVEIDEVAKKHFATASNGDVRSALNALELA--VISSEP-- 210
Query: 253 NED-VLEVTGVIPKPWIEK 270
NED V+ +T + + ++K
Sbjct: 211 NEDGVIHITLDVAEECLQK 229
>ZFIN|ZDB-GENE-070410-99 [details] [associations]
symbol:rfc1 "replication factor C (activator 1) 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
ZFIN:ZDB-GENE-070410-99 GO:GO:0005524 GO:GO:0006260 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GeneTree:ENSGT00670000098003
GO:GO:0003689 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 CTD:5981
EMBL:CR759875 EMBL:BX000461 IPI:IPI00851894 RefSeq:NP_001082960.2
UniGene:Dr.79216 Ensembl:ENSDART00000143948 GeneID:100037336
KEGG:dre:100037336 NextBio:20788508 ArrayExpress:F1Q5P6 Bgee:F1Q5P6
Uniprot:F1Q5P6
Length = 1147
Score = 111 (44.1 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 46/181 (25%), Positives = 80/181 (44%)
Query: 63 GADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQ 122
G+ L GPPG GKT+T C +L G Y +E+NAS R +++ +
Sbjct: 634 GSGFKAALLSGPPGVGKTTTAALVCEEL-GYSY----VEMNASCTRSKNSLKEVIAESLN 688
Query: 123 QTA-SGFNQDGKPCPPFK-IVILDEADSMT-HAAQAALRRTME--KETKSTRFCLICNYV 177
T+ F K ++I+DE D M + + ++ + K++K C+ CN
Sbjct: 689 NTSIKNFYTGASQTVSSKHVLIMDEVDGMAGNEDRGGIQEMIGLIKQSKIPIICM-CNDR 747
Query: 178 SCI-IQPLTSRCSKFRF-KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRA 235
+ I+ L + C RF +P E + + I +E + AL ++ S D+R+
Sbjct: 748 NHQKIRSLANYCYDLRFQRPRVEQ-IKGAMMSIAFKEGLKIPPPALNEVILASNQDIRQV 806
Query: 236 I 236
+
Sbjct: 807 L 807
Score = 62 (26.9 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCL 61
WV+KYRP+++ ++I QQ S K L
Sbjct: 578 WVDKYRPRSLKNLIGQQGDQSCANKLL 604
>UNIPROTKB|E2QW76 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0003689 "DNA clamp
loader activity" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GQINFPG EMBL:AAEX03002535
Ensembl:ENSCAFT00000025512 Uniprot:E2QW76
Length = 1152
Score = 125 (49.1 bits), Expect = 0.00034, P = 0.00034
Identities = 60/232 (25%), Positives = 99/232 (42%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
NK + W++ + +D + K G+ L GPPG GKT+T C +
Sbjct: 607 NKLLRWLQNWHRGPPEDKKRAAKFGKFAGKD-DGSSFKAALLSGPPGVGKTTTASLVCQE 665
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTA-SGF---NQDGKPCPPFKI----- 140
L G Y +ELNASD R +++ V T+ +GF +Q G +
Sbjct: 666 L-GYSY----VELNASDTRSKNSLKEVVAESLNNTSITGFYSTSQHGSDGAAHSVGSKHA 720
Query: 141 VILDEADSMT-HAAQAALRRTME--KETKSTRFCLICNYVSCI-IQPLTSRCSKFRF-KP 195
+I+DE D M + + ++ + K TK C+ CN + I+ L C RF +P
Sbjct: 721 LIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICM-CNDRNHPKIRSLVHYCFDLRFQRP 779
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS-CARLK 246
E + + I +E + A+ ++ + D+R+ + L CAR K
Sbjct: 780 RVEQ-IKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSK 830
>TIGR_CMR|GSU_2230 [details] [associations]
symbol:GSU_2230 "DNA polymerase III, delta prime subunit"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR004622 GO:GO:0006260
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008408 GO:GO:0003887
KO:K02341 TIGRFAMs:TIGR00678 HSSP:P28631 HOGENOM:HOG000192593
OMA:AFIKIDQ RefSeq:NP_953279.1 ProteinModelPortal:Q74AW9
GeneID:2687562 KEGG:gsu:GSU2230 PATRIC:22027315
ProtClustDB:CLSK828770 BioCyc:GSUL243231:GH27-2186-MONOMER
Uniprot:Q74AW9
Length = 323
Score = 117 (46.2 bits), Expect = 0.00041, P = 0.00041
Identities = 51/205 (24%), Positives = 88/205 (42%)
Query: 47 VIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLF-------GDMYRER 98
V+ Q+ V+VL++ L H +LF G G GK +T +A F G R
Sbjct: 6 VLGQETAVNVLQRALRSGKTAHAYLFEGIEGCGKMTTALAFIEAAFCRRDDGCGSCPSCR 65
Query: 99 IL------ELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCP-PFKIVILDEADSMTH 151
+ +L+ G + D+V+ ++ + +P P K I+D+AD +
Sbjct: 66 KMAGLQHPDLHRLAPEGAFIKIDQVRELQRELSL------RPVEAPMKACIIDDADRLNP 119
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AA AL +T+E+ + L+ + I+ + SRC RF PL E + +Y+ +
Sbjct: 120 AAANALLKTLEEPPGNALLILLTTNPAGILPTVRSRCQLLRFSPLPERVIE---EYLTDA 176
Query: 212 ESVMCDFKALETLVETSGGDMRRAI 236
+ A +GG + RA+
Sbjct: 177 GR---EPAAARLAASLAGGSLSRAL 198
>UNIPROTKB|F1NEP9 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0006260
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 EMBL:AADN02015876 EMBL:AADN02015877 EMBL:AADN02015878
EMBL:AADN02015879 EMBL:AADN02015880 IPI:IPI00574416
Ensembl:ENSGALT00000023118 ArrayExpress:F1NEP9 Uniprot:F1NEP9
Length = 1147
Score = 123 (48.4 bits), Expect = 0.00055, P = 0.00055
Identities = 59/225 (26%), Positives = 97/225 (43%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
NK + W+ + T +D + + S K GA L GPPG GKT+T C +
Sbjct: 607 NKLLRWLRSWHKNTSEDG-QAKTNKSGGKD--DGASFKAALLSGPPGVGKTTTASLVCKE 663
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTA-SGFNQDGKPCPPFK-IVILDEAD 147
L G Y +ELNASD R +++ V T+ F K ++I+DE D
Sbjct: 664 L-GYSY----VELNASDTRSKNSLKEVVAESLNNTSIKDFCSGTSSSVSGKHVLIMDEVD 718
Query: 148 SMT-HAAQAALRRTME--KETKSTRFCLICNYVSCI-IQPLTSRCSKFRF-KPLAENTML 202
M + + ++ + + TK C+ CN + I+ L C RF +P E +
Sbjct: 719 GMAGNEDRGGIQELIGLIRHTKVPIICM-CNDRNHPKIRSLVHYCFDLRFQRPRLEQ-IK 776
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS-CARLK 246
+ I +E + A+ ++ + D+R+ + L CA+ K
Sbjct: 777 GAMMSIAFKEGLKIPPPAMNEIILAANQDIRQVLHNLNMWCAKDK 821
>UNIPROTKB|E1C339 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0006260
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GQINFPG EMBL:AADN02015876 EMBL:AADN02015877
EMBL:AADN02015878 EMBL:AADN02015879 EMBL:AADN02015880
IPI:IPI00683437 Ensembl:ENSGALT00000029582 ArrayExpress:E1C339
Uniprot:E1C339
Length = 1153
Score = 123 (48.4 bits), Expect = 0.00056, P = 0.00056
Identities = 59/225 (26%), Positives = 97/225 (43%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
NK + W+ + T +D + + S K GA L GPPG GKT+T C +
Sbjct: 611 NKLLRWLRSWHKNTSEDG-QAKTNKSGGKD--DGASFKAALLSGPPGVGKTTTASLVCKE 667
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTA-SGFNQDGKPCPPFK-IVILDEAD 147
L G Y +ELNASD R +++ V T+ F K ++I+DE D
Sbjct: 668 L-GYSY----VELNASDTRSKNSLKEVVAESLNNTSIKDFCSGTSSSVSGKHVLIMDEVD 722
Query: 148 SMT-HAAQAALRRTME--KETKSTRFCLICNYVSCI-IQPLTSRCSKFRF-KPLAENTML 202
M + + ++ + + TK C+ CN + I+ L C RF +P E +
Sbjct: 723 GMAGNEDRGGIQELIGLIRHTKVPIICM-CNDRNHPKIRSLVHYCFDLRFQRPRLEQ-IK 780
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS-CARLK 246
+ I +E + A+ ++ + D+R+ + L CA+ K
Sbjct: 781 GAMMSIAFKEGLKIPPPAMNEIILAANQDIRQVLHNLNMWCAKDK 825
>WB|WBGene00010676 [details] [associations]
symbol:K08F4.1 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 GO:GO:0005524 GO:GO:0006974
GO:GO:0017111 eggNOG:COG0470 KO:K11269 GeneTree:ENSGT00550000075029
EMBL:Z68879 PIR:T23478 RefSeq:NP_501841.1 ProteinModelPortal:Q21350
SMR:Q21350 PaxDb:Q21350 EnsemblMetazoa:K08F4.1.1
EnsemblMetazoa:K08F4.1.2 EnsemblMetazoa:K08F4.1.3 GeneID:177879
KEGG:cel:CELE_K08F4.1 UCSC:K08F4.1.2 CTD:177879 WormBase:K08F4.1
HOGENOM:HOG000017144 InParanoid:Q21350 OMA:LRCDLST NextBio:898772
Uniprot:Q21350
Length = 850
Score = 125 (49.1 bits), Expect = 0.00072, Sum P(3) = 0.00072
Identities = 56/215 (26%), Positives = 95/215 (44%)
Query: 35 WVEKYRPKTIDDVI-----EQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
W E + +DD++ +++EV+ + + L GP G GK ST+ +
Sbjct: 294 WDECVFHQKVDDLLASLGEKEREVLHMDNGKIRRPSSKMLLLSGPAGLGK-STLARIVAR 352
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
G Y +++NASD R + + +KV A +T+ + D +P +ILDE D
Sbjct: 353 QAG--YST--IDVNASDARTVADL-NKVLEGAVKTSRTLDADQRPA----CLILDEIDGT 403
Query: 150 THAAQAALRRTMEKETKST--RFCL-ICNYV-SCIIQPLTSRCSKFRFKPLAENTMLTRL 205
L R ++ K R + ICN + + ++ L + ++ + RL
Sbjct: 404 PIDTIRHLVRCIQATGKKAIRRPIIGICNNLYTPALRDLRGVAWCVQLVATKQDVLAKRL 463
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
+ IC++E + CD L L E DMR +I LQ
Sbjct: 464 EEICDRERLRCDLSTLRKLCELCANDMRHSINTLQ 498
Score = 43 (20.2 bits), Expect = 0.00072, Sum P(3) = 0.00072
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 35 WVEKYRPKTIDDVIEQQEV 53
WV KY K D++ V
Sbjct: 265 WVNKYEAKNFSDLLSDSTV 283
Score = 38 (18.4 bits), Expect = 0.00072, Sum P(3) = 0.00072
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 322 LETLVETSGGDMRRAITCLQ 341
L L E DMR +I LQ
Sbjct: 479 LRKLCELCANDMRHSINTLQ 498
>POMBASE|SPAC26H5.02c [details] [associations]
symbol:SPAC26H5.02c "DNA replication ATPase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000731
"DNA synthesis involved in DNA repair" evidence=ISS] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0033567 "DNA replication,
Okazaki fragment processing" evidence=ISO] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR006642 Pfam:PF00004 SMART:SM00382
SMART:SM00734 PomBase:SPAC26H5.02c GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GO:GO:0046872 GO:GO:0003677 GO:GO:0000731
GO:GO:0043142 GO:GO:0033567 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 OMA:HDEPDAF InterPro:IPR021886 Pfam:PF12002 HSSP:P38251
PIR:T38421 RefSeq:NP_594449.2 ProteinModelPortal:O13984
STRING:O13984 EnsemblFungi:SPAC26H5.02c.1 GeneID:2542096
KEGG:spo:SPAC26H5.02c OrthoDB:EOG4Z924S NextBio:20803168
Uniprot:O13984
Length = 504
Score = 117 (46.2 bits), Expect = 0.00087, P = 0.00087
Identities = 56/234 (23%), Positives = 98/234 (41%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVS---VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
P E+ RPK++D+ + Q+E+V +++ + + +G GTGKT+ +A +L
Sbjct: 85 PLAERARPKSLDEYVGQEELVGERGIIRNLIEQDRCNSMILWGSAGTGKTT--LA---RL 139
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+ R +E++A+ + D K F + + + G+ I+ LDE
Sbjct: 140 IAVTTKSRFIEISATST----TVADCRKIF-EDSQNYLTLTGRKT----IIFLDEVHRFN 190
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC- 209
A Q +EK + N + L SRC F K L + + L + C
Sbjct: 191 RAQQDIFLPMVEKGLVTLIGATTENPSFRLNSALISRCPVFVLKKLTRDNVKKILNHACL 250
Query: 210 -EQESVMCDFKALETLV-----ETSGGDMRRAITCLQ-SCARLKGGEGIVNEDV 256
E E + +ET + + GD R A+ L+ S L+ G + ED+
Sbjct: 251 LESERLGSSMPNVETSIIDYISAITDGDARMALNALEMSIGMLRQGP-LSLEDI 303
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.392 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 456 443 0.00090 118 3 11 22 0.38 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 142
No. of states in DFA: 605 (64 KB)
Total size of DFA: 244 KB (2129 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 37.54u 0.07s 37.61t Elapsed: 00:00:10
Total cpu time: 37.57u 0.07s 37.64t Elapsed: 00:00:10
Start: Thu Aug 15 11:22:49 2013 End: Thu Aug 15 11:22:59 2013
WARNINGS ISSUED: 1