BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12151
(528 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/372 (32%), Positives = 204/372 (54%), Gaps = 8/372 (2%)
Query: 159 AALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYE 217
++ +L + +GS D +I GL+HFLEHM+F+G++KYP+EN++ FLS GSSNA T E
Sbjct: 57 SSAALDVHIGSLSDPPNIAGLSHFLEHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGE 116
Query: 218 TTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLL 277
T +YFDV HL+ ++D F+ FF+SPL + E++ VDSE + +++ND RL QL
Sbjct: 117 HTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLE 176
Query: 278 ATACTKENPAGKFVWGNLETLKNTVDEN--ELYAALRNLQKTHYVANHMTLALQARLDLP 335
++P KF GN TL+ ++ ++ L +Y +N M + + R L
Sbjct: 177 KATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLD 236
Query: 336 TLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQQ 395
L VV+ FS + + P F E PF+ + + Y + P+ D+ LY+T+ P +Q+
Sbjct: 237 DLTNLVVKLFSEVENKNVPLPEFP-EHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQK 295
Query: 396 LYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLT 455
YK+ P L IGHEGPGS++S L+ K + G E + F INV LT
Sbjct: 296 YYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKEGA----RGFMFFIINVDLT 351
Query: 456 DQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLH 515
++G+ ++ I+ +FQY++ L ++ E+ +++ + F + + Y +++
Sbjct: 352 EEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGI 411
Query: 516 MQYFPSQEYITG 527
+ Y+P +E +T
Sbjct: 412 LHYYPLEEVLTA 423
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
Length = 978
Score = 216 bits (551), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/372 (32%), Positives = 200/372 (53%), Gaps = 8/372 (2%)
Query: 159 AALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYE 217
++ +L + +GS D +IPGL+HF EHM+F+G++KYP+EN++ FLS GSSNA T E
Sbjct: 45 SSAALDVHIGSLSDPPNIPGLSHFCEHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGE 104
Query: 218 TTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLL 277
T +YFDV HL+ ++D F+ FF+ PL E++ VDSE + +++ND RL QL
Sbjct: 105 HTNYYFDVSHEHLEGALDRFAQFFLCPLFDASCKDREVNAVDSEHEKNVMNDAWRLFQLE 164
Query: 278 ATACTKENPAGKFVWGNLETLKNTVDEN--ELYAALRNLQKTHYVANHMTLALQARLDLP 335
++P KF GN TL+ ++ ++ L T+Y +N M + + R L
Sbjct: 165 KATGNPKHPFSKFGTGNKYTLETRPNQEGIDVREELLKFHSTYYSSNLMAICVLGRESLD 224
Query: 336 TLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQQ 395
L VV+ FS + + P F E PF+ + + Y + P+ D+ LY+T+ P +QQ
Sbjct: 225 DLTNLVVKLFSEVENKNVPLPEFP-EHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQQ 283
Query: 396 LYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLT 455
YK+ P L IGHEGPGS++S L+ K + G E + F INV LT
Sbjct: 284 YYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKEGA----RGFMFFIINVDLT 339
Query: 456 DQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLH 515
++G+ ++ I+ +FQY++ L ++ E +++ + F + + Y +++
Sbjct: 340 EEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQECKDLNAVAFRFKDKERPRGYTSKIAGK 399
Query: 516 MQYFPSQEYITG 527
+ Y+P +T
Sbjct: 400 LHYYPLNGVLTA 411
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 216 bits (550), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 122/372 (32%), Positives = 200/372 (53%), Gaps = 8/372 (2%)
Query: 159 AALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYE 217
++ +L + +GS D +IPGL+HF EHM+F+G++KYP+EN++ FLS GSSNA T E
Sbjct: 86 SSAALDVHIGSLSDPPNIPGLSHFCEHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGE 145
Query: 218 TTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLL 277
T +YFDV HL+ ++D F+ FF+ PL E++ VDSE + +++ND RL QL
Sbjct: 146 HTNYYFDVSHEHLEGALDRFAQFFLCPLFDASCKDREVNAVDSEHEKNVMNDAWRLFQLE 205
Query: 278 ATACTKENPAGKFVWGNLETLKNTVDEN--ELYAALRNLQKTHYVANHMTLALQARLDLP 335
++P KF GN TL+ ++ ++ L T+Y +N M + + R L
Sbjct: 206 KATGNPKHPFSKFGTGNKYTLETRPNQEGIDVREELLKFHSTYYSSNLMAICVLGRESLD 265
Query: 336 TLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQQ 395
L VV+ FS + + P F E PF+ + + Y + P+ D+ LY+T+ P +QQ
Sbjct: 266 DLTNLVVKLFSEVENKNVPLPEFP-EHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQQ 324
Query: 396 LYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLT 455
YK+ P L IGHEGPGS++S L+ K + G E + F INV LT
Sbjct: 325 YYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKEGA----RGFMFFIINVDLT 380
Query: 456 DQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLH 515
++G+ ++ I+ +FQY++ L ++ E +++ + F + + Y +++
Sbjct: 381 EEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQECKDLNAVAFRFKDKERPRGYTSKIAGK 440
Query: 516 MQYFPSQEYITG 527
+ Y+P +T
Sbjct: 441 LHYYPLNGVLTA 452
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 216 bits (549), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 121/372 (32%), Positives = 204/372 (54%), Gaps = 8/372 (2%)
Query: 159 AALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYE 217
++ +L + +GS D +I GL+HFL+HM+F+G++KYP+EN++ FLS GSSNA T E
Sbjct: 57 SSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGE 116
Query: 218 TTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLL 277
T +YFDV HL+ ++D F+ FF+SPL + E++ VDSE + +++ND RL QL
Sbjct: 117 HTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLE 176
Query: 278 ATACTKENPAGKFVWGNLETLKNTVDEN--ELYAALRNLQKTHYVANHMTLALQARLDLP 335
++P KF GN TL+ ++ ++ L +Y +N M + + R L
Sbjct: 177 KATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLD 236
Query: 336 TLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQQ 395
L VV+ FS + + P F E PF+ + + Y + P+ D+ LY+T+ P +Q+
Sbjct: 237 DLTNLVVKLFSEVENKNVPLPEFP-EHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQK 295
Query: 396 LYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLT 455
YK+ P L IGHEGPGS++S L+ K + G E + F INV LT
Sbjct: 296 YYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKEGA----RGFMFFIINVDLT 351
Query: 456 DQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLH 515
++G+ ++ I+ +FQY++ L ++ E+ +++ + F + + Y +++
Sbjct: 352 EEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGI 411
Query: 516 MQYFPSQEYITG 527
+ Y+P +E +T
Sbjct: 412 LHYYPLEEVLTA 423
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 216 bits (549), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 121/372 (32%), Positives = 204/372 (54%), Gaps = 8/372 (2%)
Query: 159 AALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYE 217
++ +L + +GS D +I GL+HFL+HM+F+G++KYP+EN++ FLS GSSNA T E
Sbjct: 44 SSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGE 103
Query: 218 TTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLL 277
T +YFDV HL+ ++D F+ FF+SPL + E++ VDSE + +++ND RL QL
Sbjct: 104 HTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLE 163
Query: 278 ATACTKENPAGKFVWGNLETLKNTVDEN--ELYAALRNLQKTHYVANHMTLALQARLDLP 335
++P KF GN TL+ ++ ++ L +Y +N M + + R L
Sbjct: 164 KATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLD 223
Query: 336 TLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQQ 395
L VV+ FS + + P F E PF+ + + Y + P+ D+ LY+T+ P +Q+
Sbjct: 224 DLTNLVVKLFSEVENKNVPLPEFP-EHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQK 282
Query: 396 LYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLT 455
YK+ P L IGHEGPGS++S L+ K + G E + F INV LT
Sbjct: 283 YYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKEGA----RGFMFFIINVDLT 338
Query: 456 DQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLH 515
++G+ ++ I+ +FQY++ L ++ E+ +++ + F + + Y +++
Sbjct: 339 EEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGI 398
Query: 516 MQYFPSQEYITG 527
+ Y+P +E +T
Sbjct: 399 LHYYPLEEVLTA 410
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 215 bits (548), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 121/372 (32%), Positives = 204/372 (54%), Gaps = 8/372 (2%)
Query: 159 AALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYE 217
++ +L + +GS D +I GL+HFL+HM+F+G++KYP+EN++ FLS GSSNA T E
Sbjct: 57 SSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGE 116
Query: 218 TTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLL 277
T +YFDV HL+ ++D F+ FF+SPL + E++ VDSE + +++ND RL QL
Sbjct: 117 HTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLE 176
Query: 278 ATACTKENPAGKFVWGNLETLKNTVDEN--ELYAALRNLQKTHYVANHMTLALQARLDLP 335
++P KF GN TL+ ++ ++ L +Y +N M + + R L
Sbjct: 177 KATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLD 236
Query: 336 TLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQQ 395
L VV+ FS + + P F E PF+ + + Y + P+ D+ LY+T+ P +Q+
Sbjct: 237 DLTNLVVKLFSEVENKNVPLPEFP-EHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQK 295
Query: 396 LYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLT 455
YK+ P L IGHEGPGS++S L+ K + G E + F INV LT
Sbjct: 296 YYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKEGA----RGFMFFIINVDLT 351
Query: 456 DQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLH 515
++G+ ++ I+ +FQY++ L ++ E+ +++ + F + + Y +++
Sbjct: 352 EEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGI 411
Query: 516 MQYFPSQEYITG 527
+ Y+P +E +T
Sbjct: 412 LHYYPLEEVLTA 423
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 215 bits (548), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 121/372 (32%), Positives = 204/372 (54%), Gaps = 8/372 (2%)
Query: 159 AALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYE 217
++ +L + +GS D +I GL+HFL+HM+F+G++KYP+EN++ FLS GSSNA T E
Sbjct: 86 SSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGE 145
Query: 218 TTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLL 277
T +YFDV HL+ ++D F+ FF+SPL + E++ VDSE + +++ND RL QL
Sbjct: 146 HTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLE 205
Query: 278 ATACTKENPAGKFVWGNLETLKNTVDEN--ELYAALRNLQKTHYVANHMTLALQARLDLP 335
++P KF GN TL+ ++ ++ L +Y +N M + + R L
Sbjct: 206 KATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLD 265
Query: 336 TLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQQ 395
L VV+ FS + + P F E PF+ + + Y + P+ D+ LY+T+ P +Q+
Sbjct: 266 DLTNLVVKLFSEVENKNVPLPEFP-EHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQK 324
Query: 396 LYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLT 455
YK+ P L IGHEGPGS++S L+ K + G E + F INV LT
Sbjct: 325 YYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKEGA----RGFMFFIINVDLT 380
Query: 456 DQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLH 515
++G+ ++ I+ +FQY++ L ++ E+ +++ + F + + Y +++
Sbjct: 381 EEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGI 440
Query: 516 MQYFPSQEYITG 527
+ Y+P +E +T
Sbjct: 441 LHYYPLEEVLTA 452
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/372 (32%), Positives = 203/372 (54%), Gaps = 8/372 (2%)
Query: 159 AALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYE 217
++ +L + +GS D +I GL+HFL+HM+F+G++KYP+EN++ FLS GSSNA T E
Sbjct: 57 SSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGE 116
Query: 218 TTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLL 277
T +YFDV HL+ ++D F+ FF+SPL + E++ VDSE + +++ND RL QL
Sbjct: 117 HTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLE 176
Query: 278 ATACTKENPAGKFVWGNLETLKNTVDEN--ELYAALRNLQKTHYVANHMTLALQARLDLP 335
++P KF GN TL+ ++ ++ L +Y +N M + + R L
Sbjct: 177 KATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLD 236
Query: 336 TLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQQ 395
L VV+ FS + + P F E PF+ + + Y + P+ D+ LY+T+ P +Q+
Sbjct: 237 DLTNLVVKLFSEVENKNVPLPEFP-EHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQK 295
Query: 396 LYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLT 455
YK+ P L IGHEGPGS++S L+ K + G + F INV LT
Sbjct: 296 YYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKAGA----RGFMFFIINVDLT 351
Query: 456 DQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLH 515
++G+ ++ I+ +FQY++ L ++ E+ +++ + F + + Y +++
Sbjct: 352 EEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGI 411
Query: 516 MQYFPSQEYITG 527
+ Y+P +E +T
Sbjct: 412 LHYYPLEEVLTA 423
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
Two Bound Peptides
Length = 1019
Score = 213 bits (541), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 121/372 (32%), Positives = 199/372 (53%), Gaps = 8/372 (2%)
Query: 159 AALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYE 217
++ +L + +GS D +IPGL+HF HM+F+G++KYP+EN++ FLS GSSNA T E
Sbjct: 86 SSAALDVHIGSLSDPPNIPGLSHFCFHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGE 145
Query: 218 TTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLL 277
T +YFDV HL+ ++D F+ FF+ PL E++ VDSE + +++ND RL QL
Sbjct: 146 HTNYYFDVSHEHLEGALDRFAQFFLCPLFDASCKDREVNAVDSEHEKNVMNDAWRLFQLE 205
Query: 278 ATACTKENPAGKFVWGNLETLKNTVDEN--ELYAALRNLQKTHYVANHMTLALQARLDLP 335
++P KF GN TL+ ++ ++ L T+Y +N M + + R L
Sbjct: 206 KATGNPKHPFSKFGTGNKYTLETRPNQEGIDVREELLKFHSTYYSSNLMAICVLGRESLD 265
Query: 336 TLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQQ 395
L VV+ FS + + P F E PF+ + + Y + P+ D+ LY+T+ P +QQ
Sbjct: 266 DLTNLVVKLFSEVENKNVPLPEFP-EHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQQ 324
Query: 396 LYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLT 455
YK+ P L IGHEGPGS++S L+ K + G E + F INV LT
Sbjct: 325 YYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKEGA----RGFMFFIINVDLT 380
Query: 456 DQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLH 515
++G+ ++ I+ +FQY++ L ++ E +++ + F + + Y +++
Sbjct: 381 EEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQECKDLNAVAFRFKDKERPRGYTSKIAGK 440
Query: 516 MQYFPSQEYITG 527
+ Y+P +T
Sbjct: 441 LHYYPLNGVLTA 452
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 212 bits (540), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/372 (32%), Positives = 200/372 (53%), Gaps = 8/372 (2%)
Query: 159 AALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYE 217
++ +L + +GS D +I GL+HF EHM+F+G++KYP+EN++ FLS GSSNA T E
Sbjct: 57 SSAALDVHIGSLSDPPNIAGLSHFCEHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGE 116
Query: 218 TTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLL 277
T +YFDV HL+ ++D F+ FF+ PL E++ VDSE + +++ND RL QL
Sbjct: 117 HTNYYFDVSHEHLEGALDRFAQFFLCPLFDESCKDREVNAVDSEHEKNVMNDAWRLFQLE 176
Query: 278 ATACTKENPAGKFVWGNLETLKNTVDEN--ELYAALRNLQKTHYVANHMTLALQARLDLP 335
++P KF GN TL+ ++ ++ L +Y +N M + + R L
Sbjct: 177 KATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVCVLGRESLD 236
Query: 336 TLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQQ 395
L VV+ FS + + P F E PF+ + + Y + P+ D+ LY+T+ P +Q+
Sbjct: 237 DLTNLVVKLFSEVENKNVPLPEFP-EHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQK 295
Query: 396 LYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLT 455
YK+ P L IGHEGPGS++S L+ K + G E + F INV LT
Sbjct: 296 YYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKEGA----RGFMFFIINVDLT 351
Query: 456 DQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLH 515
++G+ ++ I+ +FQY++ L ++ E +++ + F + + Y +++
Sbjct: 352 EEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQECKDLNAVAFRFKDKERPRGYTSKIAGI 411
Query: 516 MQYFPSQEYITG 527
+ Y+P +E +T
Sbjct: 412 LHYYPLEEVLTA 423
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/372 (31%), Positives = 200/372 (53%), Gaps = 8/372 (2%)
Query: 159 AALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYE 217
++ +L + +GS D +I GL+HF +HM+F+G++KYP+EN++ FLS GSSNA T E
Sbjct: 57 SSAALDVHIGSLSDPPNIAGLSHFCQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGE 116
Query: 218 TTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLL 277
T +YFDV HL+ ++D F+ FF+ PL E++ VDSE + +++ND RL QL
Sbjct: 117 HTNYYFDVSHEHLEGALDRFAQFFLCPLFDESCKDREVNAVDSEHEKNVMNDAWRLFQLE 176
Query: 278 ATACTKENPAGKFVWGNLETLKNTVDEN--ELYAALRNLQKTHYVANHMTLALQARLDLP 335
++P KF GN TL+ ++ ++ L +Y +N M + + R L
Sbjct: 177 KATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVCVLGRESLD 236
Query: 336 TLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQQ 395
L VV+ FS + + P F E PF+ + + Y + P+ D+ LY+T+ P +Q+
Sbjct: 237 DLTNLVVKLFSEVENKNVPLPEFP-EHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQK 295
Query: 396 LYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLT 455
YK+ P L IGHEGPGS++S L+ K + G E + F INV LT
Sbjct: 296 YYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKEGA----RGFMFFIINVDLT 351
Query: 456 DQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLH 515
++G+ ++ I+ +FQY++ L ++ E +++ + F + + Y +++
Sbjct: 352 EEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQECKDLNAVAFRFKDKERPRGYTSKIAGI 411
Query: 516 MQYFPSQEYITG 527
+ Y+P +E +T
Sbjct: 412 LHYYPLEEVLTA 423
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 164 bits (416), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 109/360 (30%), Positives = 175/360 (48%), Gaps = 6/360 (1%)
Query: 162 SLTIGVGSFCDGHI-PGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTT 220
+L + VGS D GLAH+LEHM MGS+KYP+ + +L GGS NAST T
Sbjct: 46 ALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTA 105
Query: 221 FYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATA 280
FY +V L ++D ++ PLL + E + V++E + D R+ Q+ A
Sbjct: 106 FYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAET 165
Query: 281 CTKENPAGKFVWGNLETLKNTVDENELYAALRNLQKTHYVANHMTLALQARLDLPTLEAW 340
+P KF GNLETL + N + AL++ + +Y AN M + + LP L
Sbjct: 166 INPAHPGSKFSGGNLETLSDKPG-NPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKM 224
Query: 341 VVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQQLYKTK 400
+ F +P+ ES K +V + + + V P VL + + +++K
Sbjct: 225 AADTFGRVPNKESKKPEITVPVVTDAQKGIIIHYV-PALPRKVLRVEFRIDNNSAKFRSK 283
Query: 401 PLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVD 460
+++++ IG+ PG++ +L+K+ L I A S N + I+ +LTD+G+
Sbjct: 284 TDELITYLIGNRSPGTLSDWLQKQGLVEGISAN---SDPIVNGNSGVLAISASLTDKGLA 340
Query: 461 QIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQYFP 520
++ IF YL LL + I + + E++N+ I F Y S +DYVE L+ M P
Sbjct: 341 NRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIRVP 400
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|F Chain F, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|H Chain H, Yeast Mitochondrial Processing Peptidase
Length = 443
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 9/198 (4%)
Query: 177 GLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDI 236
G AHFLEH+ F G++ P++ + + G NA T E T +Y + + K++DI
Sbjct: 48 GTAHFLEHLAFKGTQNRPQQG-IELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDI 106
Query: 237 FSNFFISPLLKRDSIASEMDIVDSEFQS-SILNDTCRLEQLLATACTKENPAGKFVWGNL 295
S+ +L +I E D++ E + + D + L K+ P G+ + G +
Sbjct: 107 LSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDH-LHEITYKDQPLGRTILGPI 165
Query: 296 ETLKNTVDENELYAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPK 355
+ +K+ + L++ +Y + M LA +D L + ++F +P +ESP
Sbjct: 166 KNIKSITRTD-----LKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPV 220
Query: 356 KTFSVETPFEL-DRWNRF 372
S P + R RF
Sbjct: 221 PLGSPRGPLPVFCRGERF 238
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 443
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 89/198 (44%), Gaps = 9/198 (4%)
Query: 177 GLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDI 236
G AHFL+H+ F G++ P++ + + G NA T E T +Y + + K++DI
Sbjct: 48 GTAHFLQHLAFKGTQNRPQQG-IELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDI 106
Query: 237 FSNFFISPLLKRDSIASEMDIVDSEFQS-SILNDTCRLEQLLATACTKENPAGKFVWGNL 295
S+ +L +I E D++ E + + D + L K+ P G+ + G +
Sbjct: 107 LSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITY-KDQPLGRTILGPI 165
Query: 296 ETLKNTVDENELYAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPK 355
+ +K+ + L++ +Y + M LA +D L + ++F +P +ESP
Sbjct: 166 KNIKSITRTD-----LKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPV 220
Query: 356 KTFSVETPFEL-DRWNRF 372
S P + R RF
Sbjct: 221 PLGSPRGPLPVFCRGERF 238
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
pdb|3HDI|B Chain B, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
Length = 421
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 91/185 (49%), Gaps = 11/185 (5%)
Query: 151 EKKSDEKLAALSLTIGVGS-FCDGHIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGS 209
EK S + ++ + +G GS + G++HFLEHM F G+ + + F + GG
Sbjct: 16 EKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQ-EIAEFFDSIGGQ 74
Query: 210 SNASTEYETTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILND 269
NA T E T +Y V + H +++D S+ F +++ + E +V E + +++D
Sbjct: 75 VNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIK--MVDD 132
Query: 270 TCR--LEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQKTHYVANHMTLA 327
T + LL++A ++ G + G +ETL N+ +E LR+ Y +++ ++
Sbjct: 133 TPDDIVHDLLSSATYGKHSLGYPILGTVETL-NSFNE----GMLRHYMDRFYTGDYVVIS 187
Query: 328 LQARL 332
+ +
Sbjct: 188 VAGNV 192
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|A Chain A, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 437
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 135/320 (42%), Gaps = 19/320 (5%)
Query: 177 GLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDI 236
G+AH LEHM+F G++ +F ++ GG NA T + T +Y VP L M +
Sbjct: 48 GVAHALEHMMFKGTKDV-GPGEFSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGL 106
Query: 237 FSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLE--QLLATACTKENPAGKFVWGN 294
++ + ++ + E+ ++ E + +D R + + L A +P V G
Sbjct: 107 EADRMANLVVDDELFKKEIQVIAEERRWRT-DDKPRSKAYEALMAASYVAHPYRVPVIGW 165
Query: 295 LETLKNTVDENELYAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESP 354
+ ++N ++ +R+ K Y N+ T+ + ++ + + + + E+P
Sbjct: 166 MNDIQNMTAQD-----VRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAP 220
Query: 355 KKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQQLYKTK---PLDVLSWFI-G 410
+ E P + R TVK ++ L + W+ P + L K++ L++L+ + G
Sbjct: 221 ARKQQGE-PQQAG--VRRVTVKAPAELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDG 277
Query: 411 HEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQI---NVTLTDQGVDQIQHIMD 467
++G +R A+ AGY L+ L + VT+ D + D
Sbjct: 278 YDGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVTIAQLETDLRAQVRD 337
Query: 468 IIFQYLRLLSQSPISSEMYA 487
I + + S + S+M A
Sbjct: 338 IAAKGVTEAELSRVKSQMVA 357
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
pdb|3AMI|B Chain B, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
Length = 445
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/320 (21%), Positives = 135/320 (42%), Gaps = 19/320 (5%)
Query: 177 GLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDI 236
G+AH LEHM+F G+ K +F ++ GG NA T + T +Y VP L M +
Sbjct: 48 GVAHALEHMMFKGT-KDVGPGEFSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGL 106
Query: 237 FSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLE--QLLATACTKENPAGKFVWGN 294
++ + ++ + E+ ++ E + +D R + + L A +P V G
Sbjct: 107 EADRMANLVVDDELFKKEIQVIAEERRWRT-DDKPRSKAYEALMAASYVAHPYRVPVIGW 165
Query: 295 LETLKNTVDENELYAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESP 354
+ ++N ++ +R+ K Y N+ T+ + ++ + + + + E+P
Sbjct: 166 MNDIQNMTAQD-----VRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAP 220
Query: 355 KKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQQLYKTK---PLDVLSWFI-G 410
+ E P + R TVK ++ L + W+ P + L K++ L++L+ + G
Sbjct: 221 ARKQQGE-PQQAG--VRRVTVKAPAELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDG 277
Query: 411 HEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQI---NVTLTDQGVDQIQHIMD 467
++G +R A+ AGY L+ L + VT+ D + D
Sbjct: 278 YDGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVTIAQLETDLRAQVRD 337
Query: 468 IIFQYLRLLSQSPISSEMYA 487
I + + S + S+M A
Sbjct: 338 IAAKGVTEAELSRVKSQMVA 357
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 446
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 14/177 (7%)
Query: 177 GLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDI 236
G +FLEH+ F G++ P+ N + + + G NA + E T +Y + K++++
Sbjct: 54 GAGYFLEHLAFKGTKNRPQ-NALEKEVESMGAHLNAYSSREHTAYYIKALSKDVPKAVEL 112
Query: 237 FSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLL----ATACTKENPAGKFVW 292
++ + L+ I E D++ E Q NDT E + ATA A + V
Sbjct: 113 LADIVQNCSLEDSQIEKERDVIVRELQE---NDTSMREVVFNYLHATAFQGTGLA-QSVE 168
Query: 293 GNLETLKNTVDENELYAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIP 349
G E ++ A L THY A M LA ++ L +HF G+P
Sbjct: 169 GPSENIRKLSR-----ADLTEYLSTHYTAPRMVLAAAGGVEHQQLLELAQKHFGGVP 220
>pdb|3EOQ|A Chain A, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
pdb|3EOQ|B Chain B, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
Length = 406
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 93/257 (36%), Gaps = 25/257 (9%)
Query: 177 GLAHFLEHMVFMGSEKYPEENDFDAFLSTR-----GGSSNASTEYETTTFYFDVPEPHLK 231
G++HFLEH VF G E D DA R G NA T E T +Y V
Sbjct: 43 GVSHFLEHXVFKGPE------DXDALAVNRAFDRXGAQYNAFTSEEATVYYGAVLPEFAY 96
Query: 232 KSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFV 291
+ +F+ + P L+ + +E ++ E + + +P G V
Sbjct: 97 DLLGLFAK-LLRPALREEDFQTEKLVILEEIARYQDRPGFXAYEWARARFFQGHPLGNSV 155
Query: 292 WGNLETLKNTVDENELYAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSN 351
G E++ E + Y+ + LA R+D L A P
Sbjct: 156 LGTRESITALTREGXA-----AYHRRRYLPKNXVLAATGRVDFDRLLAEAERLTEAWPEG 210
Query: 352 ESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQQLYKTK-PLDVLSWFIG 410
E+ + + F ++ +P + LY+ P V + + P VL+ +G
Sbjct: 211 EAERAYPPLTPAFGVEE-------RPYEKARALYLVALFPGVAYQEEARFPGQVLAHLLG 263
Query: 411 HEGPGSIMSYLRKKFLA 427
EG G + L K LA
Sbjct: 264 EEGSGRLHFALVDKGLA 280
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|M Chain M, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|A Chain A, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|A Chain A, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|A Chain A, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|A Chain A, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|AA Chain a, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 446
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 14/176 (7%)
Query: 177 GLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDI 236
G +F+EH+ F G++ P N + + + G NA + E T +Y L K++++
Sbjct: 54 GAGYFVEHLAFKGTKNRP-GNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVEL 112
Query: 237 FSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLL----ATACTKENPAGKFVW 292
++ + L+ I E D++ E Q NDT + + ATA + P + V
Sbjct: 113 LADIVQNCSLEDSQIEKERDVILQELQE---NDTSMRDVVFNYLHATA-FQGTPLAQSVE 168
Query: 293 GNLETLKNTVDENELYAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGI 348
G E ++ A L HY A M LA L+ L +HFSG+
Sbjct: 169 GPSENVRKLS-----RADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGL 219
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 446
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 14/176 (7%)
Query: 177 GLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDI 236
G +F+EH+ F G++ P N + + + G NA + E T +Y L K++++
Sbjct: 54 GAGYFVEHLAFKGTKNRP-GNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVEL 112
Query: 237 FSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLL----ATACTKENPAGKFVW 292
++ + L+ I E D++ E Q NDT + + ATA + P + V
Sbjct: 113 LADIVQNCSLEDSQIEKERDVILQELQE---NDTSMRDVVFNYLHATA-FQGTPLAQSVE 168
Query: 293 GNLETLKNTVDENELYAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGI 348
G E ++ A L HY A M LA L+ L +HFSG+
Sbjct: 169 GPSENVRKLS-----RADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGL 219
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 480
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 14/176 (7%)
Query: 177 GLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDI 236
G +F+EH+ F G++ P N + + + G NA + E T +Y L K++++
Sbjct: 88 GAGYFVEHLAFKGTKNRP-GNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVEL 146
Query: 237 FSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLL----ATACTKENPAGKFVW 292
++ + L+ I E D++ E Q NDT + + ATA + P + V
Sbjct: 147 LADIVQNCSLEDSQIEKERDVILQELQE---NDTSMRDVVFNYLHATA-FQGTPLAQSVE 202
Query: 293 GNLETLKNTVDENELYAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGI 348
G E ++ A L HY A M LA L+ L +HFSG+
Sbjct: 203 GPSENVRKLS-----RADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGL 253
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|N Chain N, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|N Chain N, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|N Chain N, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|N Chain N, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|A Chain A, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|N Chain N, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|A Chain A, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|N Chain N, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|A Chain A, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|N Chain N, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|A Chain A, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|N Chain N, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|A Chain A, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|N Chain N, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|A Chain A, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|N Chain N, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|A Chain A, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|N Chain N, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|A Chain A, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|N Chain N, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|A Chain A, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|N Chain N, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 446
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 87/200 (43%), Gaps = 11/200 (5%)
Query: 152 KKSDEKLAALSLTIGVGS-FCDGHIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSS 210
++S + + + IG GS + + G +F+EH+ F G++K P F+ + + G
Sbjct: 28 EESSQPTCTVGVWIGAGSRYENEKNNGAGYFVEHLAFKGTKKRPCAA-FEKEVESMGAHF 86
Query: 211 NASTEYETTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDT 270
N T E T FY + K +++ ++ + L+ I E ++ E + + ND
Sbjct: 87 NGYTSREQTAFYIKALSKDMPKVVELLADVVQNCALEESQIEKERGVILQELK-EMDNDM 145
Query: 271 CRL--EQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQKTHYVANHMTLAL 328
+ + L ATA + + V G E +K+ A L + TH+ A M LA
Sbjct: 146 TNVTFDYLHATA-FQGTALARTVEGTTENIKHLT-----RADLASYIDTHFKAPRMVLAA 199
Query: 329 QARLDLPTLEAWVVEHFSGI 348
+ L +HFSG+
Sbjct: 200 AGGISHKELVDAARQHFSGV 219
>pdb|3G77|A Chain A, Bacterial Cytosine Deaminase V152aF316CD317G MUTANT
Length = 423
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 194 PEENDFDAF-------LSTRGGSSNASTEYETTTFYFDVPE 227
P EN FDA S RGG AST+ TT Y + PE
Sbjct: 377 PAENGFDALRRQVPVRYSVRGGKVIASTQPAQTTVYLEQPE 417
>pdb|1R9Z|A Chain A, Bacterial Cytosine Deaminase D314s Mutant.
pdb|1RAK|A Chain A, Bacterial Cytosine Deaminase D314s Mutant Bound To
5-Fluoro-4-(S)- Hydroxyl-3,4-Dihydropyrimidine
Length = 430
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 194 PEENDFDAF-------LSTRGGSSNASTEYETTTFYFDVPE 227
P EN FDA S RGG AST+ TT Y + PE
Sbjct: 384 PAENGFDALRRQVPVRYSVRGGKVIASTQPAQTTVYLEQPE 424
>pdb|1R9Y|A Chain A, Bacterial Cytosine Deaminase D314a Mutant.
pdb|1RA5|A Chain A, Bacterial Cytosine Deaminase D314a Mutant Bound To
5-Fluoro-4-(S)- Hydroxyl-3,4-Dihydropyrimidine
Length = 430
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 194 PEENDFDAF-------LSTRGGSSNASTEYETTTFYFDVPE 227
P EN FDA S RGG AST+ TT Y + PE
Sbjct: 384 PAENGFDALRRQVPVRYSVRGGKVIASTQPAQTTVYLEQPE 424
>pdb|1R9X|A Chain A, Bacterial Cytosine Deaminase D314g Mutant.
pdb|1RA0|A Chain A, Bacterial Cytosine Deaminase D314g Mutant Bound To
5-Fluoro-4-(S)- Hydroxy-3,4-Dihydropyrimidine
Length = 430
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 194 PEENDFDAF-------LSTRGGSSNASTEYETTTFYFDVPE 227
P EN FDA S RGG AST+ TT Y + PE
Sbjct: 384 PAENGFDALRRQVPVRYSVRGGKVIASTQPAQTTVYLEQPE 424
>pdb|3O7U|A Chain A, Crystal Structure Of Cytosine Deaminase From Escherichia
Coli Complexed With Zinc And Phosphono-Cytosine
pdb|3RN6|A Chain A, Crystal Structure Of Cytosine Deaminase From Escherichia
Coli Complexed With Zinc And Isoguanine
pdb|3R0D|A Chain A, Crystal Structure Of Cytosine Deaminase From Escherichia
Coli Complexed With Two Zinc Atoms In The Active Site
Length = 427
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 194 PEENDFDAF-------LSTRGGSSNASTEYETTTFYFDVPE 227
P EN FDA S RGG AST+ TT Y + PE
Sbjct: 381 PAENGFDALRRQVPVRYSVRGGKVIASTQPAQTTVYLEQPE 421
>pdb|1K6W|A Chain A, The Structure Of Escherichia Coli Cytosine Deaminase
pdb|1K70|A Chain A, The Structure Of Escherichia Coli Cytosine Deaminase Bound
To 4- Hydroxy-3,4-Dihydro-1h-Pyrimidin-2-One
Length = 426
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 194 PEENDFDAF-------LSTRGGSSNASTEYETTTFYFDVPE 227
P EN FDA S RGG AST+ TT Y + PE
Sbjct: 380 PAENGFDALRRQVPVRYSVRGGKVIASTQPAQTTVYLEQPE 420
>pdb|2AM1|A Chain A, Sp Protein Ligand 1
pdb|2AM2|A Chain A, Sp Protein Ligand 2
Length = 454
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 252 ASEMDIVD-SEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAA 310
+E++I D E + S+ LEQ L T + A + L+ V E ++ A
Sbjct: 239 GAELEITDLVERKDSLTFKANFLEQALDLPVTGKYNATNAXIASYVALQEGVSEEQIRLA 298
Query: 311 LRNLQKTH------YVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKK 356
++L+ T AN + PT ++E FS IP+NE KK
Sbjct: 299 FQHLELTRNRTEWKKAANGADILSDVYNANPTAXKLILETFSAIPANEGGKK 350
>pdb|3LHQ|A Chain A, Dna-Binding Transcriptional Repressor Acrr From Salmonella
Typhimurium.
pdb|3LHQ|B Chain B, Dna-Binding Transcriptional Repressor Acrr From Salmonella
Typhimurium
Length = 220
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 456 DQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI--GFNYHSTKSSVDYVEEL 512
Q ++ QHI+D+ LRL SQ +S+ AEI+N + G Y K+ D E+
Sbjct: 10 QQALETRQHILDV---ALRLFSQQGVSATSLAEIANAAGVTRGAIYWHFKNKSDLFSEI 65
>pdb|3JZE|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of
Dihydroorotase (Pyrc) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium Str. Lt2
pdb|3JZE|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of
Dihydroorotase (Pyrc) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium Str. Lt2
pdb|3JZE|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of
Dihydroorotase (Pyrc) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium Str. Lt2
pdb|3JZE|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of
Dihydroorotase (Pyrc) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium Str. Lt2
Length = 372
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 397 YKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTD 456
Y+ + LD + GH+ + YL A E+E G+HE F LY T +
Sbjct: 83 YRQRILDAVP--AGHDFTPLMTCYLTDSLDADELERGFHEGVFTAAXLYPANA--TTNSS 138
Query: 457 QGVDQIQHIMDII 469
GV + IM ++
Sbjct: 139 HGVTSVDAIMPVL 151
>pdb|2FGE|A Chain A, Crystal Structure Of Presequence Protease Prep From
Arabidopsis Thaliana
pdb|2FGE|B Chain B, Crystal Structure Of Presequence Protease Prep From
Arabidopsis Thaliana
Length = 995
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 177 GLAHFLEHMVFMGSEKYPEENDFDAFL 203
G+ H L+H V GS KYP + F L
Sbjct: 74 GIPHILQHSVLCGSRKYPVKEPFVELL 100
>pdb|3IYJ|F Chain F, Bovine Papillomavirus Type 1 Outer Capsid
pdb|3IYJ|A Chain A, Bovine Papillomavirus Type 1 Outer Capsid
pdb|3IYJ|B Chain B, Bovine Papillomavirus Type 1 Outer Capsid
pdb|3IYJ|C Chain C, Bovine Papillomavirus Type 1 Outer Capsid
pdb|3IYJ|D Chain D, Bovine Papillomavirus Type 1 Outer Capsid
pdb|3IYJ|E Chain E, Bovine Papillomavirus Type 1 Outer Capsid
Length = 495
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 21/104 (20%)
Query: 434 YHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEM-----YAE 488
YH EY + L +V +T Q V +Q +M + + + Q P SS + Y E
Sbjct: 361 YHRHMEEYKLAFILELCSVEITAQTVSHLQGLMPSVLENWEIGVQPPTSSILEDTYRYIE 420
Query: 489 ------ISNI------HHIGFNYHSTKSSVDYVEELSLHMQYFP 520
SN+ + GF + ++D E+LSL + FP
Sbjct: 421 SPATKCASNVIPAKEDPYAGFKFW----NIDLKEKLSLDLDQFP 460
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,192,189
Number of Sequences: 62578
Number of extensions: 615768
Number of successful extensions: 1270
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1206
Number of HSP's gapped (non-prelim): 50
length of query: 528
length of database: 14,973,337
effective HSP length: 103
effective length of query: 425
effective length of database: 8,527,803
effective search space: 3624316275
effective search space used: 3624316275
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)