Query psy12151
Match_columns 528
No_of_seqs 304 out of 1866
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 20:02:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12151.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12151hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0959|consensus 100.0 4.7E-62 1E-66 532.4 39.4 399 66-528 16-415 (974)
2 COG1025 Ptr Secreted/periplasm 100.0 4E-59 8.6E-64 500.8 39.3 399 64-527 10-409 (937)
3 PRK15101 protease3; Provisiona 100.0 1.3E-57 2.9E-62 526.5 44.5 399 65-527 31-430 (961)
4 TIGR02110 PQQ_syn_pqqF coenzym 100.0 9.4E-51 2E-55 440.7 41.7 342 79-492 1-345 (696)
5 COG0612 PqqL Predicted Zn-depe 100.0 2.7E-48 6E-53 411.5 34.8 368 72-518 12-388 (438)
6 KOG0960|consensus 100.0 8.2E-47 1.8E-51 366.6 29.6 368 74-521 30-409 (467)
7 KOG2067|consensus 100.0 1.7E-41 3.7E-46 330.0 26.8 366 75-519 22-403 (472)
8 PTZ00432 falcilysin; Provision 100.0 1.3E-38 2.8E-43 366.3 35.3 353 158-525 115-532 (1119)
9 PRK15101 protease3; Provisiona 99.9 1.5E-25 3.3E-30 259.6 31.0 331 158-517 547-881 (961)
10 COG1026 Predicted Zn-dependent 99.9 3.9E-25 8.5E-30 239.9 29.6 325 158-499 42-389 (978)
11 KOG2583|consensus 99.9 9.8E-24 2.1E-28 206.8 31.8 313 158-498 43-365 (429)
12 PF00675 Peptidase_M16: Insuli 99.9 6.8E-24 1.5E-28 191.2 14.1 136 158-294 12-148 (149)
13 KOG2019|consensus 99.9 2E-22 4.4E-27 208.0 23.6 335 169-518 81-444 (998)
14 PF05193 Peptidase_M16_C: Pept 99.9 2.1E-21 4.5E-26 179.7 19.3 177 308-493 4-184 (184)
15 KOG0961|consensus 99.8 2.8E-19 6.2E-24 184.6 25.5 328 158-505 41-392 (1022)
16 COG1026 Predicted Zn-dependent 99.4 4.8E-11 1E-15 131.0 26.4 321 157-498 547-895 (978)
17 PTZ00432 falcilysin; Provision 99.3 1.5E-09 3.2E-14 126.5 30.0 322 157-498 680-1041(1119)
18 KOG2019|consensus 99.1 1.9E-08 4.1E-13 105.7 24.8 319 157-498 581-925 (998)
19 COG1025 Ptr Secreted/periplasm 98.8 2.4E-06 5.2E-11 94.4 27.4 328 157-513 525-857 (937)
20 KOG0959|consensus 98.7 2.1E-05 4.5E-10 88.5 30.1 312 158-498 533-858 (974)
21 PF03410 Peptidase_M44: Protei 98.2 3.8E-05 8.2E-10 78.3 15.8 169 158-353 19-194 (590)
22 PHA03081 putative metalloprote 98.1 0.0001 2.2E-09 75.3 14.9 166 158-353 19-194 (595)
23 KOG0961|consensus 98.0 0.00021 4.5E-09 75.9 16.7 266 214-497 631-918 (1022)
24 PF08367 M16C_assoc: Peptidase 97.1 0.0055 1.2E-07 59.9 12.0 93 157-250 90-193 (248)
25 KOG2067|consensus 94.2 1 2.2E-05 46.0 13.2 166 158-333 264-445 (472)
26 COG0612 PqqL Predicted Zn-depe 93.5 1.5 3.3E-05 46.4 14.2 131 197-334 291-433 (438)
27 KOG0960|consensus 88.5 13 0.00028 38.2 13.8 166 158-333 270-450 (467)
28 PF00675 Peptidase_M16: Insuli 88.2 9.4 0.0002 33.5 11.9 123 378-518 9-136 (149)
29 KOG1832|consensus 78.5 1 2.2E-05 50.2 1.4 10 174-183 1464-1473(1516)
30 PF10446 DUF2457: Protein of u 75.3 1.1 2.4E-05 46.3 0.5 11 506-516 429-439 (458)
31 TIGR02110 PQQ_syn_pqqF coenzym 68.7 1.5E+02 0.0032 33.6 15.4 121 380-518 20-146 (696)
32 PF10446 DUF2457: Protein of u 62.9 3.3 7.1E-05 42.9 0.9 10 446-455 387-396 (458)
33 KOG0943|consensus 60.4 6.8 0.00015 45.4 2.8 22 460-481 2142-2163(3015)
34 PF08367 M16C_assoc: Peptidase 53.1 99 0.0021 30.0 9.5 98 372-475 82-186 (248)
35 PF05193 Peptidase_M16_C: Pept 51.6 1.1E+02 0.0023 26.9 9.0 96 158-258 79-184 (184)
36 KOG2038|consensus 51.0 6.8 0.00015 43.4 0.9 11 113-123 894-904 (988)
37 PRK03573 transcriptional regul 48.5 75 0.0016 27.7 7.2 68 416-495 65-132 (144)
38 KOG1832|consensus 47.1 10 0.00022 42.8 1.5 8 18-25 1291-1298(1516)
39 PF09186 DUF1949: Domain of un 45.6 69 0.0015 22.6 5.4 50 192-241 4-53 (56)
40 PRK11512 DNA-binding transcrip 44.4 94 0.002 27.1 7.2 69 415-495 72-141 (144)
41 PRK10870 transcriptional repre 38.7 1.2E+02 0.0025 27.8 7.0 70 415-496 89-158 (176)
42 COG1854 LuxS LuxS protein invo 38.3 2.2E+02 0.0047 25.5 8.0 113 381-514 33-147 (161)
43 KOG2652|consensus 37.3 26 0.00056 35.2 2.5 12 157-168 304-315 (348)
44 PTZ00415 transmission-blocking 36.5 25 0.00054 42.7 2.6 16 158-173 205-220 (2849)
45 PF02724 CDC45: CDC45-like pro 33.8 21 0.00045 39.8 1.4 16 330-345 397-412 (622)
46 PF03066 Nucleoplasmin: Nucleo 32.1 15 0.00033 32.7 0.0 6 81-86 90-95 (149)
47 KOG0943|consensus 31.9 24 0.00053 41.2 1.5 19 217-235 1845-1863(3015)
48 PRK11840 bifunctional sulfur c 31.4 33 0.00071 34.6 2.2 53 156-210 54-110 (326)
49 KOG4264|consensus 30.2 34 0.00074 36.3 2.1 27 147-173 121-147 (694)
50 PF09851 SHOCT: Short C-termin 27.6 1.4E+02 0.0031 18.7 3.9 23 472-494 7-30 (31)
51 PF04147 Nop14: Nop14-like fam 27.4 28 0.0006 40.4 1.0 21 271-291 542-562 (840)
52 COG5406 Nucleosome binding fac 26.6 32 0.0007 37.4 1.3 13 83-95 916-928 (1001)
53 cd04922 ACT_AKi-HSDH-ThrA_2 AC 26.0 2.1E+02 0.0046 20.5 5.5 45 198-242 20-65 (66)
54 PRK13777 transcriptional regul 26.0 2.4E+02 0.0052 26.1 6.8 71 415-497 77-155 (185)
55 KOG1834|consensus 25.9 50 0.0011 36.2 2.5 9 111-119 891-899 (952)
56 KOG0699|consensus 25.5 55 0.0012 33.3 2.6 23 160-182 313-336 (542)
57 PF13840 ACT_7: ACT domain ; P 24.9 1.7E+02 0.0037 21.7 4.7 39 199-239 27-65 (65)
58 PF03153 TFIIA: Transcription 24.5 44 0.00095 34.7 1.8 11 157-167 331-341 (375)
59 cd04923 ACT_AK-LysC-DapG-like_ 24.4 2.2E+02 0.0049 20.0 5.3 43 198-241 19-61 (63)
60 cd04936 ACT_AKii-LysC-BS-like_ 24.0 2.3E+02 0.005 19.9 5.3 43 198-241 19-61 (63)
61 KOG1189|consensus 23.5 54 0.0012 36.7 2.2 8 84-91 865-872 (960)
62 cd04916 ACT_AKiii-YclM-BS_2 AC 22.8 2.8E+02 0.006 19.9 5.6 45 199-243 21-66 (66)
63 PF03115 Astro_capsid: Astrovi 22.2 29 0.00064 39.4 0.0 15 158-172 711-725 (787)
No 1
>KOG0959|consensus
Probab=100.00 E-value=4.7e-62 Score=532.36 Aligned_cols=399 Identities=38% Similarity=0.687 Sum_probs=381.5
Q ss_pred CCCCCCCCCCCcceeEEecCCCEEEEEecCCcccccccccccccccchhhhhcccCCCCCCCCCCCCCCCCccchhhhhh
Q psy12151 66 PLPVKGLCDRYKYSVIQLKNGLTALLVSDVENLITLDENVTADDKMSMEQESEESGNESGDETASSVDSQGMEVDEFEEA 145 (528)
Q Consensus 66 ~~~~~~~~d~~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (528)
..++|+..|.+.||+++|+|||+|+|++|+..
T Consensus 16 ~~~~k~~~d~r~yr~~~L~Ngl~alLisDp~t------------------------------------------------ 47 (974)
T KOG0959|consen 16 VSIVKSLGDTREYRGIELTNGLRALLISDPKT------------------------------------------------ 47 (974)
T ss_pred cccccCCCCccceeEEEecCCceEEEecCCCC------------------------------------------------
Confidence 44899999999999999999999999999865
Q ss_pred hhhhhhccCccceEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEE
Q psy12151 146 DRSKQEKKSDEKLAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFD 224 (528)
Q Consensus 146 ~~~~~~~~~~~~~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~ 224 (528)
+.+++++.|.+||..|| +.+|+|||+|||+|+||++||.++.+..+|.++||+.||+|+.++|+|+|.
T Consensus 48 -----------D~ssaal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk~gGssNA~T~~e~T~y~F~ 116 (974)
T KOG0959|consen 48 -----------DKSSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSKNGGSSNAYTDSEHTNYYFD 116 (974)
T ss_pred -----------CccceeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHhcCCccccccccccceEEEe
Confidence 37899999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccc
Q psy12151 225 VPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDE 304 (528)
Q Consensus 225 ~~~~~l~~~L~lla~~l~~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~ 304 (528)
+..+.|+.||++|+++|.+|.|.++.++||+.+|.+|++.+.+++.|+..++++.++-++|||++|.+|+.++|...+..
T Consensus 117 V~~~~l~~ALDrFaqFf~~Plf~~~a~eREv~AVdSE~~~nl~~D~wr~~ql~~~l~~~~hp~~kF~tGN~~tL~~~p~~ 196 (974)
T KOG0959|consen 117 VQHDHLEGALDRFAQFFSDPLFNKSATEREVGAVDSEHEKNLNSDGWRFDQLLRSLSNPGHPYSKFSTGNKKTLLEGPRE 196 (974)
T ss_pred cchHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHHHhccCcchhHHHHHHHHhcCCCCcchhccccchhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred hHHHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCcccCCCceEEEEeecCCcceE
Q psy12151 305 NELYAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVL 384 (528)
Q Consensus 305 ~~i~e~L~~f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 384 (528)
+.+++.|++||++||++++|+|||+|+.++|.++.++.+.|+.+++...+.|.++. .|+.....++.+.+.|.++...+
T Consensus 197 ~~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~~~F~~i~N~~~~~p~f~~-~p~~~e~~~~~~~v~pik~~~~l 275 (974)
T KOG0959|consen 197 IDLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNKKKPRPVFPE-PPFLPEELKKLVRVVPIKDGRSL 275 (974)
T ss_pred chHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHHHHcccccccCCCCCcccC-CCCChHHhCcEEEEEeccccceE
Confidence 78899999999999999999999999999999999999999999999888877765 47777778888999999999999
Q ss_pred EEEEEcCCccccccCCHHHHHHHHHhCCCCChHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHH
Q psy12151 385 YMTWYTPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQH 464 (528)
Q Consensus 385 ~l~f~~p~~~~~~~~~~l~vl~~iLg~~~~~sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~ 464 (528)
.|.|++|+....++..+.+++++++|++|.|+|+.+|+++||+.++.++... ...+++.|.|.+.++.+|++++++
T Consensus 276 ~is~~~p~~~~~y~~kP~~y~~hLigheg~GSL~~~Lk~~gw~~sl~a~~~~----~as~~~~f~v~idLtd~G~e~~~~ 351 (974)
T KOG0959|consen 276 MISWPVPPLNHHYKSKPLRYLSHLIGHEGPGSLLSYLKRLGWATSLEAGIPE----FASGYSFFNVSIDLTDEGLEHVDE 351 (974)
T ss_pred EEEEecCCcccccccCcHHHHHHHhccCCcchHHHHHHHhhchheeecCCCc----cccccceEEEEEEeccccchhHHH
Confidence 9999999999889999999999999999999999999999999999998863 237889999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHHcccCCccccccCC
Q psy12151 465 IMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQYFPSQEYITGT 528 (528)
Q Consensus 465 v~~~i~~~l~~L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~la~~l~~~~~e~~l~~~ 528 (528)
++..++++|..|+..|..++.+++...+-...|+|..+++|..++..++.+|++||++++|+|.
T Consensus 352 ii~~~f~yi~~l~~~~~~~~i~~E~~~~~~~~Frf~~k~~p~~~~~~~~~nlq~~P~~~il~~~ 415 (974)
T KOG0959|consen 352 IIGLVFNYIKLLQSAGPEKWIFKELQLISEVKFRFQDKEPPMEYASEIASNLQYYPVEDVLTGS 415 (974)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHhhhhheeecccCCcHHHHHHHHhhcccCChHHhhcch
Confidence 9999999999999999999999999999999999999999999999999999999999999873
No 2
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-59 Score=500.76 Aligned_cols=399 Identities=35% Similarity=0.566 Sum_probs=372.2
Q ss_pred cCCCCCCCCCCCCcceeEEecCCCEEEEEecCCcccccccccccccccchhhhhcccCCCCCCCCCCCCCCCCccchhhh
Q psy12151 64 RLPLPVKGLCDRYKYSVIQLKNGLTALLVSDVENLITLDENVTADDKMSMEQESEESGNESGDETASSVDSQGMEVDEFE 143 (528)
Q Consensus 64 ~~~~~~~~~~d~~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (528)
....+.++..|.+.|++|+|+|||+|++++||..
T Consensus 10 ~~~~i~~~~~d~r~y~~I~LpNGl~~LlisDP~a---------------------------------------------- 43 (937)
T COG1025 10 IVLTIHKPALDDRKYRAIKLPNGLRALLVSDPQA---------------------------------------------- 43 (937)
T ss_pred chhhcccCcccCcceeEEECCCCceEEEecCCCC----------------------------------------------
Confidence 3456789999999999999999999999999987
Q ss_pred hhhhhhhhccCccceEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEE
Q psy12151 144 EADRSKQEKKSDEKLAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFY 222 (528)
Q Consensus 144 ~~~~~~~~~~~~~~~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~ 222 (528)
+++++++.|++|+..|| +.+|+|||+|||+|+|+++||.++.|..||++|||+.||+|..+.|+|+
T Consensus 44 -------------~ks~aAL~V~vGs~~DP~e~~GLAHflEHmlfmGseKYP~~~~f~~fLskhgGs~NA~T~~~~T~fy 110 (937)
T COG1025 44 -------------DKSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSHNASTAGERTAFY 110 (937)
T ss_pred -------------CccceeEEeecCCCCChhhcccHHHHHHHHHHhcCccCCCccchHHHHHHcCCccccccCCCceeEE
Confidence 38999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred EEcChhhHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccc
Q psy12151 223 FDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTV 302 (528)
Q Consensus 223 ~~~~~~~l~~~L~lla~~l~~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it 302 (528)
|++.++.|+.+|+.|+++|.+|.|+++.++||+.+|.+|+.....++.++++++.+.++.++||+++|.+||.++|..++
T Consensus 111 FeV~~~al~~ALDrFa~ff~~PLf~~e~~dRE~~AV~sE~~~~~~~D~~R~~~~~~~~~np~HP~srFs~GN~~TL~~~p 190 (937)
T COG1025 111 FEVENDALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSDGWRMYQVQALTANPGHPLSKFSTGNLETLSDKP 190 (937)
T ss_pred EEecHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHhcCcCchHHHHHHHHHhhcCCCCCccccCCCChhhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred cchHHHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCcccCCCceEEEEeecCCcc
Q psy12151 303 DENELYAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVN 382 (528)
Q Consensus 303 ~~~~i~e~L~~f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (528)
...+.++|++||++||++++|++||.|+-+++++.+++.++||.||+.....+..+. +++......+++.+.|..+..
T Consensus 191 -~~~v~~el~ef~~~~YSa~~M~lviyg~q~ldeL~~~a~~~F~~Ipn~~~~~p~~p~-p~~~d~~t~~ii~i~p~~~~~ 268 (937)
T COG1025 191 -GLVVQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADLFGDIPNRARKIPPIPV-PVVTDEQTGKIIHIVPAKPRP 268 (937)
T ss_pred -CchHHHHHHHHHHHhcChhheEEEEecCCCHHHHHHHHHHHhCcCCCCCCCCCCCCC-CCCChHHhCceEEeccCCCCc
Confidence 334499999999999999999999999999999999999999999988766655442 455555667788888988999
Q ss_pred eEEEEEEcCCccccccCCHHHHHHHHHhCCCCChHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccH
Q psy12151 383 VLYMTWYTPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQI 462 (528)
Q Consensus 383 ~l~l~f~~p~~~~~~~~~~l~vl~~iLg~~~~~sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~ 462 (528)
.+.|.|++++........+..+++++||++++|+|...|.++||+.++.++.... ..++|.|.|.+.+|.+|+.+.
T Consensus 269 ~L~i~f~i~~~~~~~~~~~~~~~s~Lig~es~gsL~~~Lk~~Glit~l~a~~~~~----~~n~~~f~is~~LT~~Gl~~~ 344 (937)
T COG1025 269 RLRIYFPIDDNSAKFRSKPDEYLSHLIGNESPGSLLAWLKKQGLITELSAGLDPI----SGNYGVFAISYELTDKGLAHY 344 (937)
T ss_pred eEEEEEEcCCcccccccCCHHHHHHHhccCCCchHHHHHHhccchhhhccccccc----cCCcceEEEEeehhhcchhhH
Confidence 9999999999887777889999999999999999999999999999999988643 168899999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHHcccCCccccccC
Q psy12151 463 QHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQYFPSQEYITG 527 (528)
Q Consensus 463 ~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~la~~l~~~~~e~~l~~ 527 (528)
++|+.+++++|+.++..|+..+.|++.+.+....|+|.+.+++.++++.++.+|+.+|++..+.+
T Consensus 345 ~~VI~~~F~yl~~l~~~~~~~~~f~Elq~v~~l~f~y~~~t~~~~~~~~l~~~m~~~p~~~~~~~ 409 (937)
T COG1025 345 DRVIALTFQYLNLLREKGIPKYTFDELQNVLDLDFRYPSKTRPMDYVSWLADNMEREPVEHTLYA 409 (937)
T ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhcccccCChHHHHHHHHHhcccCChhhhhch
Confidence 99999999999999999999999999999999999999999999999999999999988877654
No 3
>PRK15101 protease3; Provisional
Probab=100.00 E-value=1.3e-57 Score=526.51 Aligned_cols=399 Identities=30% Similarity=0.477 Sum_probs=353.1
Q ss_pred CCCCCCCCCCCCcceeEEecCCCEEEEEecCCcccccccccccccccchhhhhcccCCCCCCCCCCCCCCCCccchhhhh
Q psy12151 65 LPLPVKGLCDRYKYSVIQLKNGLTALLVSDVENLITLDENVTADDKMSMEQESEESGNESGDETASSVDSQGMEVDEFEE 144 (528)
Q Consensus 65 ~~~~~~~~~d~~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (528)
...++|+++|.+.|+.++|+|||+|++++++..|
T Consensus 31 ~~~~~k~~~d~~~~~~~~L~NGL~v~l~~~~~~~---------------------------------------------- 64 (961)
T PRK15101 31 QETIRKSEKDPRQYQAIRLDNGMTVLLVSDPQAV---------------------------------------------- 64 (961)
T ss_pred cccCcCCCCCccceEEEEeCCCCEEEEEeCCCCc----------------------------------------------
Confidence 3458999999999999999999999999998763
Q ss_pred hhhhhhhccCccceEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEE
Q psy12151 145 ADRSKQEKKSDEKLAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYF 223 (528)
Q Consensus 145 ~~~~~~~~~~~~~~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~ 223 (528)
.++++++|++|+++|| +.+|+|||+|||+|+||++||...++.++++.+||++||+|+.++|.|++
T Consensus 65 -------------~~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~ 131 (961)
T PRK15101 65 -------------KSLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSHNASTASYRTAFYL 131 (961)
T ss_pred -------------ceeEEEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHHHHhCCCccceECCCceEEEE
Confidence 8999999999999999 99999999999999999999865789999999999999999999999999
Q ss_pred EcChhhHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhccccc
Q psy12151 224 DVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVD 303 (528)
Q Consensus 224 ~~~~~~l~~~L~lla~~l~~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~ 303 (528)
++++++|+.+|++|++++.+|.|+++++++||+++.+|++...++|.+++.+.+...+|++|||+++..|+.++|..++.
T Consensus 132 ~~~~~~l~~aL~~~ad~~~~P~f~~~~~erE~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etl~~~~~ 211 (961)
T PRK15101 132 EVENDALPPAVDRLADAIAEPLLDPKNADRERNAVNAELTMARSRDGMRMAQVSAETINPAHPGSRFSGGNLETLSDKPG 211 (961)
T ss_pred EcCHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhCCCCCCcccCCCCCHHHhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999721
Q ss_pred chHHHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCcccCCCceEEEEeecCCcce
Q psy12151 304 ENELYAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNV 383 (528)
Q Consensus 304 ~~~i~e~L~~f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (528)
. ..+++|++||++||+|+||+|||+|++++++++++++++|+.||++..+.+.... +++.......++...|..++.+
T Consensus 212 ~-~~~~~L~~f~~~~Y~p~nm~lvv~G~~~~~~l~~~~~~~F~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 289 (961)
T PRK15101 212 S-KLQDALVDFYQRYYSANLMKAVIYSNQPLPELAKLAADTFGRVPNKNASVPEITV-PVVTDAQKGIIIHYVPAQPRKV 289 (961)
T ss_pred h-HHHHHHHHHHHHhCcccceEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCCCCCC-CCCCHHHcCeEEEEEECCCCcE
Confidence 0 0199999999999999999999999999999999999999999986543332211 2222222233455566777889
Q ss_pred EEEEEEcCCccccccCCHHHHHHHHHhCCCCChHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHH
Q psy12151 384 LYMTWYTPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQ 463 (528)
Q Consensus 384 l~l~f~~p~~~~~~~~~~l~vl~~iLg~~~~~sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~ 463 (528)
+.+.|+.|.....+...+..+++.+||+++.++|+++|+++||+|+++++..... ..+.|.|.|++.++++|.++++
T Consensus 290 l~l~~~~p~~~~~~~~~~~~~l~~ll~~~~~g~l~~~L~~~gla~~v~s~~~~~~---~~~~g~f~i~~~~~~~~~~~~~ 366 (961)
T PRK15101 290 LRVEFRIDNNSAKFRSKTDEYISYLIGNRSPGTLSDWLQKQGLAEGISAGADPMV---DRNSGVFAISVSLTDKGLAQRD 366 (961)
T ss_pred EEEEEecCCcHHHHhhCHHHHHHHHhcCCCCCcHHHHHHHcCccceeeecccccc---CCCceEEEEEEEcChHHHHhHH
Confidence 9999999976544455688999999999999999999999999999998764211 1467899999999998777999
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHHcccCCccccccC
Q psy12151 464 HIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQYFPSQEYITG 527 (528)
Q Consensus 464 ~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~la~~l~~~~~e~~l~~ 527 (528)
++++.|+++|+.|++.|+++++++++|+.+...|.+....++.+++..++.+|..+++++++.+
T Consensus 367 ~v~~~i~~~i~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 430 (961)
T PRK15101 367 QVVAAIFSYLNLLREKGIDKSYFDELAHVLDLDFRYPSITRDMDYIEWLADTMLRVPVEHTLDA 430 (961)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhccccCCCCCChHHHHHHHHHHhhhCCHHHheeC
Confidence 9999999999999999999999999999999999988888888999999999998999988865
No 4
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=100.00 E-value=9.4e-51 Score=440.72 Aligned_cols=342 Identities=24% Similarity=0.383 Sum_probs=294.8
Q ss_pred eeEEecCCCEEEEEecCCcccccccccccccccchhhhhcccCCCCCCCCCCCCCCCCccchhhhhhhhhhhhccCccce
Q psy12151 79 SVIQLKNGLTALLVSDVENLITLDENVTADDKMSMEQESEESGNESGDETASSVDSQGMEVDEFEEADRSKQEKKSDEKL 158 (528)
Q Consensus 79 ~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (528)
|.++|+|||+|++++++..| .
T Consensus 1 r~~tL~NGLrVllv~~p~~p-----------------------------------------------------------~ 21 (696)
T TIGR02110 1 RRITLPNGLRVHLYHQPDAK-----------------------------------------------------------R 21 (696)
T ss_pred CeEEcCCCCEEEEEECCCCC-----------------------------------------------------------E
Confidence 35789999999999999874 9
Q ss_pred EEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEEcChhhHHHHHHHH
Q psy12151 159 AALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDIF 237 (528)
Q Consensus 159 v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l~~~L~ll 237 (528)
++++++|++||++|| +.+|+|||+|||+|+||++++...+|.++++.+||.+|++|+.++|.|++++++++++.+|++|
T Consensus 22 vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~d~T~y~~~v~~~~l~~aL~lL 101 (696)
T TIGR02110 22 AAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLERTTAFFFELPAAALAAGLARL 101 (696)
T ss_pred EEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcCCeEEEEEEecHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999998447999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHHHHHHHHHHHh
Q psy12151 238 SNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQKT 317 (528)
Q Consensus 238 a~~l~~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~e~L~~f~~~ 317 (528)
++++.+|.|++++|++||+++++|++...++|..++.+.+...+|++|||+++.+|+.++|..++. ...++|++||++
T Consensus 102 aD~l~~P~f~eeeierEr~vvl~Ei~~~~ddp~~~~~~~l~~~l~~~HPy~~~~iGt~esL~~it~--~t~edL~~F~~~ 179 (696)
T TIGR02110 102 CDMLARPLLTAEDQQREREVLEAEYIAWQNDADTLREAALLDALQAGHPLRRFHAGSRDSLALPNT--AFQQALRDFHRR 179 (696)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHhCccc--chHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986431 018999999999
Q ss_pred hcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCcccCCCceEEEEeecCCcceEEEEEEcCCccccc
Q psy12151 318 HYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQQLY 397 (528)
Q Consensus 318 ~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~f~~p~~~~~~ 397 (528)
||+|+||+|+|+|++++++++++++++|+.|+.+..+.+..+ .+.... ....... ....++.+.|.+|.... .
T Consensus 180 ~Y~p~NmvLvIvGdvs~eel~~l~e~~f~~~~~~~~~~~~~~--~p~~~~--~~~~~~~--~~~~q~~l~~~~p~~~~-~ 252 (696)
T TIGR02110 180 HYQAGNMQLWLQGPQSLDELEQLAARFGASLAAGGECAQAPP--APLLRF--DRLTLAG--GSEPRLWLLFALAGLPA-T 252 (696)
T ss_pred hcchhcEEEEEEeCCCHHHHHHHHHHHhCCCCCCCCCCCCCC--CCCCCC--ceeEEEe--cCcceEEEEEeecCCCC-C
Confidence 999999999999999999999999999999987654322211 111111 1222222 23578888888886543 3
Q ss_pred cCCHHHHHHHHHhCCCCChHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHH
Q psy12151 398 KTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLS 477 (528)
Q Consensus 398 ~~~~l~vl~~iLg~~~~~sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~ 477 (528)
+..++.+++.+||++++|+|+.+||++||+|++++++. +. ..+.+.|.|++.+++.+.++.+++++.|+++|+.|+
T Consensus 253 d~~al~lL~~iLg~g~sSrL~~~LRe~GLaysV~s~~~---~~-~~g~~lf~I~~~lt~~~~~~~~~v~~~i~~~L~~L~ 328 (696)
T TIGR02110 253 ARDNVTLLCEFLQDEAPGGLLAQLRERGLAESVAATWL---YQ-DAGQALLALEFSARCISAAAAQQIEQLLTQWLGALA 328 (696)
T ss_pred ChHHHHHHHHHhCCCcchHHHHHHHHCCCEEEEEEecc---cc-CCCCcEEEEEEEEcCCCccCHHHHHHHHHHHHHHHH
Confidence 44578999999999999999999999999999998653 21 144569999999966544689999999999999999
Q ss_pred cC--CCCHHHHHHHHHH
Q psy12151 478 QS--PISSEMYAEISNI 492 (528)
Q Consensus 478 ~~--git~~el~~ak~~ 492 (528)
+. +++.+|+.++|+.
T Consensus 329 ~~~~~~~~eel~rlk~~ 345 (696)
T TIGR02110 329 EQTWAEQLEHYAQLAQR 345 (696)
T ss_pred hcCCCCCHHHHHHHHHh
Confidence 88 8999999999885
No 5
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=100.00 E-value=2.7e-48 Score=411.48 Aligned_cols=368 Identities=20% Similarity=0.283 Sum_probs=308.7
Q ss_pred CCCCCcceeEEecCCCEEEEEecCCcccccccccccccccchhhhhcccCCCCCCCCCCCCCCCCccchhhhhhhhhhhh
Q psy12151 72 LCDRYKYSVIQLKNGLTALLVSDVENLITLDENVTADDKMSMEQESEESGNESGDETASSVDSQGMEVDEFEEADRSKQE 151 (528)
Q Consensus 72 ~~d~~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (528)
+.+.. ++..+|+||+++++.+++..
T Consensus 12 ~~~~~-~~~~~L~nGl~~~~~~~~~~------------------------------------------------------ 36 (438)
T COG0612 12 PALPG-LQVFTLPNGLRVITYPNPTA------------------------------------------------------ 36 (438)
T ss_pred ccccc-ceEEEcCCCCEEEEEeCCCC------------------------------------------------------
Confidence 33444 88899999999999999976
Q ss_pred ccCccceEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEEcChhhH
Q psy12151 152 KKSDEKLAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHL 230 (528)
Q Consensus 152 ~~~~~~~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l 230 (528)
+.+++.++|++|+..++ ...|+|||+|||+|+|+++++. .++.+.++..|+..||+|+.++|.|++++.++++
T Consensus 37 -----~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~-~~i~~~~~~~G~~~na~ts~d~t~y~~~~l~~~~ 110 (438)
T COG0612 37 -----PTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPS-AELAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNL 110 (438)
T ss_pred -----CEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCCh-HHHHHHHHHhcCeeeccccchhhhhhhhhchhhh
Confidence 39999999999999999 9999999999999999999998 6899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHHHHH
Q psy12151 231 KKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAA 310 (528)
Q Consensus 231 ~~~L~lla~~l~~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~e~ 310 (528)
+.+|+++++++.+|.|++++|++||+++.+|++...++|.+++...+...+|++|||++++.|+.++|.+++ +++
T Consensus 111 ~~~l~llad~l~~p~f~~~~~e~Ek~vil~ei~~~~d~p~~~~~~~l~~~~~~~~p~~~~~~G~~e~I~~it-----~~d 185 (438)
T COG0612 111 DKALDLLADILLNPTFDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTEESIEAIT-----RED 185 (438)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhccCCCCCCCCCCHHHHHhCC-----HHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCcccCCCceEEEE----eecCCcceEEE
Q psy12151 311 LRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTV----KPVDDVNVLYM 386 (528)
Q Consensus 311 L~~f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~l 386 (528)
|++||++||+|+||+|+|+||++++++..+++++|++|+. ..+++.....++..+ ..++.+ .+...+..+.+
T Consensus 186 l~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 261 (438)
T COG0612 186 LKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPG-AAPPPKIPPEPPLGP---ERVVRVNDPEQPDLEQAWLAL 261 (438)
T ss_pred HHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHHHccCCc-cCCCCCCCCccccCC---CceEEecCCCCchhhhhhhhc
Confidence 9999999999999999999999999999999999999997 222222111112211 222222 12233445555
Q ss_pred EEEcCCccccccCCHHHHHHHHHhCCCCChHHHHHH-HccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHH
Q psy12151 387 TWYTPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLR-KKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHI 465 (528)
Q Consensus 387 ~f~~p~~~~~~~~~~l~vl~~iLg~~~~~sL~~~LR-e~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v 465 (528)
+++.|......+++++.+++.+||++..++|+..+| ++||+|+++++.... ...+.+.+++.+.+. +.+++
T Consensus 262 g~~~~~~~~~~~~~~~~l~~~llgg~~~SrLf~~~re~~glay~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~ 333 (438)
T COG0612 262 GYPGPDYDSPDDYAALLLLNGLLGGGFSSRLFQELREKRGLAYSVSSFSDFL-----SDSGLFSIYAGTAPE---NPEKT 333 (438)
T ss_pred cccCcCcCcchhhHHHHHHHHHhCCCcchHHHHHHHHhcCceeeeccccccc-----cccCCceEEEEecCC---ChhhH
Confidence 555555443336789999999999988899999999 689999999765432 566888888888864 66677
Q ss_pred HHHHHHHHHHHHcCC---CCHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHHccc
Q psy12151 466 MDIIFQYLRLLSQSP---ISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQY 518 (528)
Q Consensus 466 ~~~i~~~l~~L~~~g---it~~el~~ak~~~~~~f~~~~~~~~~~~~~~la~~l~~ 518 (528)
...|.+++..+++.. +++++++.+|+.+...+.+ ..+++...+..+...+..
T Consensus 334 ~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~-~~~s~~~~~~~~~~~~~~ 388 (438)
T COG0612 334 AELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLL-SLDSPSSIAELLGQYLLL 388 (438)
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhh-ccCCHHHHHHHHHHHHHh
Confidence 777777777666654 9999999999999988875 456777777776666654
No 6
>KOG0960|consensus
Probab=100.00 E-value=8.2e-47 Score=366.64 Aligned_cols=368 Identities=19% Similarity=0.241 Sum_probs=313.0
Q ss_pred CCCcceeEEecCCCEEEEEecCCcccccccccccccccchhhhhcccCCCCCCCCCCCCCCCCccchhhhhhhhhhhhcc
Q psy12151 74 DRYKYSVIQLKNGLTALLVSDVENLITLDENVTADDKMSMEQESEESGNESGDETASSVDSQGMEVDEFEEADRSKQEKK 153 (528)
Q Consensus 74 d~~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (528)
-..+.++.+|+||++|..-.+ ..
T Consensus 30 ~~P~t~vttL~NGlrVaTE~~-~a-------------------------------------------------------- 52 (467)
T KOG0960|consen 30 SVPETEVTTLPNGLRVATEHN-SA-------------------------------------------------------- 52 (467)
T ss_pred cCCcceEEEcCCCcEEEeccC-CC--------------------------------------------------------
Confidence 345789999999999999777 33
Q ss_pred CccceEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEEcChhhHHH
Q psy12151 154 SDEKLAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKK 232 (528)
Q Consensus 154 ~~~~~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l~~ 232 (528)
..++|++++.+||++|. ...|.|||+|||+|+||++.+. ..+...++..|+.+|++|++++|.|+..+.++++++
T Consensus 53 ---~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~-~alElEieniGahLNAytSReqT~yyakal~~dv~k 128 (467)
T KOG0960|consen 53 ---STATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQ-AALELEIENIGAHLNAYTSREQTVYYAKALSKDVPK 128 (467)
T ss_pred ---cceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchh-HHHHHHHHHHHHHhcccccccceeeehhhccccchH
Confidence 28899999999999999 9999999999999999999998 899999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHHHHHHH
Q psy12151 233 SMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALR 312 (528)
Q Consensus 233 ~L~lla~~l~~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~e~L~ 312 (528)
++++|++++.+..+.+.+|++||.+|+.|.+....+-..+.++.++..+|.++|+++.+.|+.+.|++|+ ++||+
T Consensus 129 avdiLaDIlqns~L~~s~IerER~vILrEmqevd~~~~eVVfdhLHatafQgtPL~~tilGp~enI~si~-----r~DL~ 203 (467)
T KOG0960|consen 129 AVDILADILQNSKLEESAIERERDVILREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGPSENIKSIS-----RADLK 203 (467)
T ss_pred HHHHHHHHHHhCccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcccccccChhhhhhhhh-----HHHHH
Confidence 9999999999999999999999999999999999888889999999999999999999999999999999 99999
Q ss_pred HHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCC-CCcCCCcccCCCceEEEEeecCCcceEEEEEEcC
Q psy12151 313 NLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKT-FSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTP 391 (528)
Q Consensus 313 ~f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~f~~p 391 (528)
+|.+.||.+.||+|+.+|.+++++|.+++++|||+++....+..+ ...+..|.+.+ +..+ +.+.+..++++.+.
T Consensus 204 ~yi~thY~~~RmVlaaaGgV~He~lv~la~k~fg~~~~~~~~~~~~~~~~~~FtgsE----vR~r-dd~lP~a~~AiAVE 278 (467)
T KOG0960|consen 204 DYINTHYKASRMVLAAAGGVKHEELVKLAEKYFGDLSKLQTGDKVPLVPPARFTGSE----VRVR-DDDLPLAHIAIAVE 278 (467)
T ss_pred HHHHhcccCccEEEEecCCcCHHHHHHHHHHHcCCCcccccCcCCCCCCCccccCce----eeec-CCCCchhheeeeEe
Confidence 999999999999999999999999999999999998753322111 11112344332 3332 23445555555544
Q ss_pred Cc-cccccCCHHHHHHHHHhCC---------CCChHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhcc
Q psy12151 392 PV-QQLYKTKPLDVLSWFIGHE---------GPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQ 461 (528)
Q Consensus 392 ~~-~~~~~~~~l~vl~~iLg~~---------~~~sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~ 461 (528)
+. +.++++.++.+.+.|+|.. .+++|.+.+-+..++-++.++.. +| .++|+|++++.|... ..
T Consensus 279 G~~w~~pD~~~l~van~iiG~wdr~~g~g~~~~s~La~~~~~~~l~~sfqsFnt--~Y---kDTGLwG~y~V~~~~--~~ 351 (467)
T KOG0960|consen 279 GVSWAHPDYFALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQDQLCHSFQSFNT--SY---KDTGLWGIYFVTDNL--TM 351 (467)
T ss_pred cCCcCCccHHHHHHHHHHhhhhhcccCCccCCccHHHHHHHHHHHHHHHhhhhc--cc---ccccceeEEEEecCh--hh
Confidence 43 3568999999999999952 23456677776788888777765 44 799999999999533 59
Q ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHHcccCCc
Q psy12151 462 IQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQYFPS 521 (528)
Q Consensus 462 ~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~la~~l~~~~~ 521 (528)
++.++..+.+++.+|.. .+++.|+++||++++.++.. ..+...-.|+.|+++|+.|+.
T Consensus 352 iddl~~~vl~eW~rL~~-~vteaEV~RAKn~Lkt~Lll-~ldgttpi~ediGrqlL~~Gr 409 (467)
T KOG0960|consen 352 IDDLIHSVLKEWMRLAT-SVTEAEVERAKNQLKTNLLL-SLDGTTPIAEDIGRQLLTYGR 409 (467)
T ss_pred HHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHH-HhcCCCchHHHHHHHHhhcCC
Confidence 99999999999999997 89999999999999999875 445556679999999998653
No 7
>KOG2067|consensus
Probab=100.00 E-value=1.7e-41 Score=329.99 Aligned_cols=366 Identities=16% Similarity=0.194 Sum_probs=317.1
Q ss_pred CCcceeEEecCCCEEEEEecCCcccccccccccccccchhhhhcccCCCCCCCCCCCCCCCCccchhhhhhhhhhhhccC
Q psy12151 75 RYKYSVIQLKNGLTALLVSDVENLITLDENVTADDKMSMEQESEESGNESGDETASSVDSQGMEVDEFEEADRSKQEKKS 154 (528)
Q Consensus 75 ~~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (528)
+.+.|+.+|+|||+|..-..+.
T Consensus 22 ~~~~kvttL~NGlkvase~~pg---------------------------------------------------------- 43 (472)
T KOG2067|consen 22 PSNTKVTTLPNGLKVASENTPG---------------------------------------------------------- 43 (472)
T ss_pred cccceeeecCCccEEeccCCCC----------------------------------------------------------
Confidence 3489999999999999877765
Q ss_pred ccceEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEEcChhhHHHH
Q psy12151 155 DEKLAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKS 233 (528)
Q Consensus 155 ~~~~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l~~~ 233 (528)
+.++++++++.||++|. ...|++||++.|.|+.|.+++. .++...|+++||.+.+.++++.+.|.+++.+++++.+
T Consensus 44 --~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~-~ei~~~LE~~GGn~~cqsSRetm~Yaas~~~~~v~sm 120 (472)
T KOG2067|consen 44 --QFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSS-KEILAELEKLGGNCDCQSSRETMMYAASADSDGVDSM 120 (472)
T ss_pred --CceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcH-HHHHHHHHHhCCcccccccHhhhHHHHHhhhcccHHH
Confidence 49999999999999999 9999999999999999999999 6999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHHHHHHHH
Q psy12151 234 MDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRN 313 (528)
Q Consensus 234 L~lla~~l~~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~e~L~~ 313 (528)
+++|++.+.+|.|++++++.++..+.-|+...-..|+..+.++++.++|.+++++.+..+..+.|..|+ ++.|..
T Consensus 121 ~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL~e~iH~Aay~~ntlg~pl~cp~~~i~~I~-----~~~l~~ 195 (472)
T KOG2067|consen 121 VELLADTVLNPKFTDQEVEEARRAVKYEIEELWMRPEPLLTEMIHSAAYSGNTLGLPLLCPEENIDKIN-----REVLEE 195 (472)
T ss_pred HHHHHHHHhcccccHHHHHHHHHhhhheccccccCchhhHHHHHHHHHhccCcccccccCChhhhhhhh-----HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCcccCCCceE--E-EEeecCCcceEEEEEEc
Q psy12151 314 LQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRF--Y-TVKPVDDVNVLYMTWYT 390 (528)
Q Consensus 314 f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~l~l~f~~ 390 (528)
|.+++|+|.||+|+.+| ++++++++.+++||+.||+...|+...+. ..|.++..+.- . .+........+.++|..
T Consensus 196 yl~~~ytp~rmVlA~vG-V~heelv~~~~~~~~~~~s~~~p~i~~~~-aQYtGG~~~~~~d~~~~~~g~EltHv~lg~Eg 273 (472)
T KOG2067|consen 196 YLKYFYTPERMVLAGVG-VEHEELVEIAEKLLGDLPSTKVPPIDESK-AQYTGGELKIDTDAPQVTGGPELTHVVLGFEG 273 (472)
T ss_pred HHHhcCChhheEeeecC-CCHHHHHHHHHHHhccCCccCCCCcccch-hhccccccccCCCCccccCccceeeeeEeecc
Confidence 99999999999999999 99999999999999999987555444332 23444321100 0 00011145677788887
Q ss_pred CCccccccCCHHHHHHHHHhCCCC-----------ChHHH-HHHHccccceeEeeeccccccccCcceEEEEEEEeccch
Q psy12151 391 PPVQQLYKTKPLDVLSWFIGHEGP-----------GSIMS-YLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQG 458 (528)
Q Consensus 391 p~~~~~~~~~~l~vl~~iLg~~~~-----------~sL~~-~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g 458 (528)
++..+ ++.+++.+|+.++||+|+ ++||- .|.+..|+|++.++.+. | .++|+|.|++++.|
T Consensus 274 ~~~~d-eD~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhs--y---~DtGlfgi~~s~~P-- 345 (472)
T KOG2067|consen 274 CSWND-EDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHS--Y---SDTGLFGIYASAPP-- 345 (472)
T ss_pred CCCCC-hhHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhcc--c---cCCceeEEeccCCH--
Confidence 77654 589999999999998753 45663 44578999999999874 4 78999999999999
Q ss_pred hccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHHcccC
Q psy12151 459 VDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQYF 519 (528)
Q Consensus 459 ~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~la~~l~~~ 519 (528)
+.+.+++..+.+++..+.. +++++|++|||.+++..+. ++.++..-..+++.++.+.+
T Consensus 346 -~~a~~aveli~~e~~~~~~-~v~~~el~RAK~qlkS~Ll-MNLESR~V~~EDvGRQVL~~ 403 (472)
T KOG2067|consen 346 -QAANDAVELIAKEMINMAG-GVTQEELERAKTQLKSMLL-MNLESRPVAFEDVGRQVLTT 403 (472)
T ss_pred -HHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHH-hcccccchhHHHHhHHHHhc
Confidence 5999999999999999886 6999999999999998877 56677667788999988764
No 8
>PTZ00432 falcilysin; Provisional
Probab=100.00 E-value=1.3e-38 Score=366.27 Aligned_cols=353 Identities=15% Similarity=0.145 Sum_probs=275.9
Q ss_pred eEEEEEEecccCCcCCCCCChHHHHHHHhccCCCCCCChhHHHHHHHhcC--CccceEecCCeEEEEEEcChh-hHHHHH
Q psy12151 158 LAALSLTIGVGSFCDGHIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRG--GSSNASTEYETTTFYFDVPEP-HLKKSM 234 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G--~~~na~t~~d~t~~~~~~~~~-~l~~~L 234 (528)
.+.++++|++|+. +..|+||++|||+|+||++|+. .++...+++.| +.+||+|+.|+|+|++.+.++ ++..+|
T Consensus 115 ~~~f~i~f~T~~~---d~~G~aH~LEH~~f~GS~k~p~-~~~~~~l~~~gl~~~lNA~T~~D~T~Y~~~~~~e~d~~~~l 190 (1119)
T PTZ00432 115 EMCFDFYVPTPPH---NDKGIPHILEHSVLSGSKKYNY-KDSFSLLVQGGFNSFLNAYTFKDRTSYLFASTNEKDFYNTA 190 (1119)
T ss_pred eeEEEEEecCCCC---CCcchhHHHHHHHhCCCCCCCc-ccHHHHHHhcCcCCCccccCCCCceEEEeccCCHHHHHHHH
Confidence 6788999999964 4579999999999999999999 66777777755 789999999999999999875 799999
Q ss_pred HHHHHhhhCCCCCHHHH--H---------HH--------------------HHHHHHHHHhccCChHHHHHHHHHHHcCC
Q psy12151 235 DIFSNFFISPLLKRDSI--A---------SE--------------------MDIVDSEFQSSILNDTCRLEQLLATACTK 283 (528)
Q Consensus 235 ~lla~~l~~P~f~~~~~--~---------~e--------------------k~~v~~e~~~~~~~p~~~~~~~~~~~~~~ 283 (528)
+++++++.+|.|+++++ . ++ +.+|.+|++...++|.+++.+.+.+.+|
T Consensus 191 dv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kgVV~~Emk~~~~~p~~~~~~~~~~~lf- 269 (1119)
T PTZ00432 191 DVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSGIVYSEMKKRFSDPLSFGYSVIYQNLF- 269 (1119)
T ss_pred HHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhhHHHHHHHHhhCCHHHHHHHHHHHHHh-
Confidence 99999999999998863 2 21 7889999999999999999999999999
Q ss_pred CCCCCCCCCCChhhhcccccchHHHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCC----CC-C
Q psy12151 284 ENPAGKFVWGNLETLKNTVDENELYAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPK----KT-F 358 (528)
Q Consensus 284 ~~p~~~~~~G~~e~L~~it~~~~i~e~L~~f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~----~~-~ 358 (528)
+|||+++..|++++|..++ +++|++||++||+|+||+|+|+|+++++++.++++++|+.+|...... +. .
T Consensus 270 ~~pY~~~~~G~~~~I~~lt-----~e~l~~Fh~~~Y~P~N~~l~v~Gdid~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~ 344 (1119)
T PTZ00432 270 SNVYKYDSGGDPKDIVELT-----YEELVEFYKTYYGPKTATVYFYGPNDVTERLEFVDNYLTKHPKTGQLSHTAYREDA 344 (1119)
T ss_pred CCCCCCCCCCChHhhccCC-----HHHHHHHHHHhcCccceEEEEEcCCCHHHHHHHHHHHHhhcccccccccccccccc
Confidence 9999999999999999999 999999999999999999999999999999999999999887653211 00 0
Q ss_pred CcCCCccc-CCCceEEEE---eecCCcceEEEE-EEcCCc-----------cccccCCHHHHHHHHHhCCCCChHHHHHH
Q psy12151 359 SVETPFEL-DRWNRFYTV---KPVDDVNVLYMT-WYTPPV-----------QQLYKTKPLDVLSWFIGHEGPGSIMSYLR 422 (528)
Q Consensus 359 ~~~~~~~~-~~~~~~~~~---~~~~~~~~l~l~-f~~p~~-----------~~~~~~~~l~vl~~iLg~~~~~sL~~~LR 422 (528)
....+... ...++.+.. .+...+..+.++ |++++. .+..++.++.+|+++||+++.++|++.||
T Consensus 345 ~~~~~~~~~~~~~~~v~~~~~~~~~e~~~l~~~~w~~~p~~~~~~~~~~~~~d~~~~~AL~VLs~lLggg~sS~L~q~Lr 424 (1119)
T PTZ00432 345 DENLLYEEYKDKPKHVKKKFSSHSEEEENLMSVSWLLNPKHNGSKDYDKSLIDPVDYLALLVLNYLLLGTPESVLYKALI 424 (1119)
T ss_pred cccccccccccCCeEEEeccCCCccccccEEEEEEEcCCccccccccccccCCHHHHHHHHHHHHHHcCCCccHHHHHHH
Confidence 00011100 001121211 112234556665 987422 12247889999999999999999999999
Q ss_pred HccccceeEe-eeccccccccCcceEEEEEEEeccch-----hccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q psy12151 423 KKFLAIEIEA-GYHESGFEYNHLYTLFQINVTLTDQG-----VDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIG 496 (528)
Q Consensus 423 e~glaysv~a-~~~~~~~~~~~~~g~f~i~~~~~~~g-----~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~ 496 (528)
++||+|++.. ++.. ....+.|.|.+...+.. .++++++.+.|+++|+++++.|+++++++++++.+.-.
T Consensus 425 E~GLa~svv~~~~~~-----~~~~~~f~I~l~g~~~~~~~~~~~~~~ev~~~I~~~L~~l~~eGi~~eele~a~~qlef~ 499 (1119)
T PTZ00432 425 DSGLGKKVVGSGLDD-----YFKQSIFSIGLKGIKETNEKRKDKVHYTFEKVVLNALTKVVTEGFNKSAVEASLNNIEFV 499 (1119)
T ss_pred hcCCCcCCCcCcccC-----CCCceEEEEEEEcCChHhccchhhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 9999999633 3321 25678888888633311 02478999999999999999999999999999998877
Q ss_pred cccCCCC---CcHHHHHHHHHHccc-CCccccc
Q psy12151 497 FNYHSTK---SSVDYVEELSLHMQY-FPSQEYI 525 (528)
Q Consensus 497 f~~~~~~---~~~~~~~~la~~l~~-~~~e~~l 525 (528)
++..... ....++..++..+++ .+|.++|
T Consensus 500 ~rE~~~~~~p~gl~~~~~~~~~~~~g~dp~~~l 532 (1119)
T PTZ00432 500 MKELNLGTYPKGLMLIFLMQSRLQYGKDPFEIL 532 (1119)
T ss_pred hhhccCCCCCcHHHHHHHHHHHHhcCCCHHHHH
Confidence 7632111 136788888888877 6665544
No 9
>PRK15101 protease3; Provisional
Probab=99.95 E-value=1.5e-25 Score=259.63 Aligned_cols=331 Identities=9% Similarity=0.001 Sum_probs=243.4
Q ss_pred eEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEEcChhhHHHHHHH
Q psy12151 158 LAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDI 236 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l~~~L~l 236 (528)
++.+.+.+.+|...++ ...|++.++..|+.. .. .++....+..|..++.. +.+.+.+++++.++++..+|++
T Consensus 547 k~~i~~~~~~~~~~~~~~~~~l~~L~~~ll~~-----~l-~e~~y~a~~aG~~~~~~-~~~g~~i~v~g~s~~l~~ll~~ 619 (961)
T PRK15101 547 KADISLVLRNPKAMDSARNQVLFALNDYLAGL-----AL-DQLSNQASVGGISFSTN-ANNGLMVNANGYTQRLPQLLQA 619 (961)
T ss_pred CEEEEEEEeCCCccCCHHHHHHHHHHHHHHHH-----HH-HHHhchHHhcCcEEEEc-cCCCEEEEEEecChhHHHHHHH
Confidence 8999999999999999 999999999988732 22 34544556678888888 7999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHH-HcCCCCCCCCCCCCChhhhcccccchHHHHHHHHHH
Q psy12151 237 FSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLAT-ACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQ 315 (528)
Q Consensus 237 la~~l~~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~-~~~~~~p~~~~~~G~~e~L~~it~~~~i~e~L~~f~ 315 (528)
+.+++.+|.|++++|+++|+.+.+++++..... .+.+.+.. ..+..|||+.+ .++.++|.+++ +++|++||
T Consensus 620 l~d~l~~~~~~~~~fe~~k~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~py~~~-~~~~~~l~~it-----~edl~~f~ 691 (961)
T PRK15101 620 LLEGYFSFTPTEEQLAQAKSWYREQLDSAEKGK--AYEQAIMPAQMLSQVPYFER-DERRKLLPSIT-----LKDVLAYR 691 (961)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhcccC--cHHHHHHHHHHHhcCCCCCH-HHHHHHHhcCC-----HHHHHHHH
Confidence 999999999999999999999999999766432 12222221 34678999864 57899999999 99999999
Q ss_pred HhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCcccCCCceEEEEeecCCcceEEEEEEcCCccc
Q psy12151 316 KTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQQ 395 (528)
Q Consensus 316 ~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~f~~p~~~~ 395 (528)
+++|.+.+++++|+||++.+++.++++++++.++..+..... ........+. ...+...+...+..+.+.+..++.
T Consensus 692 ~~~~~~~~~~~~v~GNi~~~ea~~l~~~~~~~l~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~-- 767 (961)
T PRK15101 692 DALLSGATPEFLVVGNLTEEQVTTLARDVQKQLGADGTEWWR-GKDVVVDKKQ-SVNFEKAGSSTDSALAAVYVPTGY-- 767 (961)
T ss_pred HHHHHhceEEEEEEcCCCHHHHHHHHHHHHHHhccCCccccc-ccceEeCCCC-eEEEecCCCCCCCeEEEEEEeCCC--
Confidence 999999999999999999999999999999888753321100 0000111111 111222222333445555544433
Q ss_pred cccCCHHHHHHHHHhCCCCChHHHHHH-HccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHH-
Q psy12151 396 LYKTKPLDVLSWFIGHEGPGSIMSYLR-KKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYL- 473 (528)
Q Consensus 396 ~~~~~~l~vl~~iLg~~~~~sL~~~LR-e~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l- 473 (528)
+..+..++..+||++..++||.+|| ++||+|+|+++.... .+.+.+.+.++....+.+.+.+.+..+++.+
T Consensus 768 --~~~~~~v~~~lLg~~~ssrlf~~LRtk~qLgY~V~s~~~~~-----~~~~~~~~~vqs~~~~~~~l~~~i~~f~~~~~ 840 (961)
T PRK15101 768 --DEYQSSAYSSLLGQIIQPWFYNQLRTEEQLGYAVFAFPMSV-----GRQWGMGFLLQSNDKQPAYLWQRYQAFFPQAE 840 (961)
T ss_pred --CCHHHHHHHHHHHHHHhHHHHHHHHHHhhhceEEEEEeecc-----CCeeeEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 2367889999999988889999999 799999999987532 3333444444333322234555555555554
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHHcc
Q psy12151 474 RLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQ 517 (528)
Q Consensus 474 ~~L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~la~~l~ 517 (528)
+.+ .++++++|+++|+.+...+.. ..++....+..+...+.
T Consensus 841 ~~l--~~lt~eE~~~~k~~l~~~~~~-~~~sl~~~a~~~~~~i~ 881 (961)
T PRK15101 841 AKL--RAMKPEEFAQYQQALINQLLQ-APQTLGEEASRLSKDFD 881 (961)
T ss_pred HHH--HhCCHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHh
Confidence 334 389999999999999999885 45677788888877664
No 10
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.94 E-value=3.9e-25 Score=239.90 Aligned_cols=325 Identities=17% Similarity=0.286 Sum_probs=258.8
Q ss_pred eEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHh-cCCccceEecCCeEEEEEEcC-hhhHHHHH
Q psy12151 158 LAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLST-RGGSSNASTEYETTTFYFDVP-EPHLKKSM 234 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~-~G~~~na~t~~d~t~~~~~~~-~~~l~~~L 234 (528)
....+++|+ ..| +..|+||.|||++|+|+++||-.+-|...+.+ ++--+||+|..|.|.|-+... .+++-.+|
T Consensus 42 ~~vFsi~F~----T~p~dstGVaHiLEHtvlcGS~kYPvkdPF~~ml~rSLntF~NA~T~~D~T~YP~sS~~~~Df~NLl 117 (978)
T COG1026 42 NNVFSIAFK----TEPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFTFPDKTVYPASSANEKDFYNLL 117 (978)
T ss_pred CceEEEEee----cCCCCCCCcchHHHHHhhhCCCCCCCCChHHHHHHHhHHHHHhhccCCCcceeeccccCcchHHHHH
Confidence 344555554 467 78999999999999999999997777777754 344489999999999998765 48899999
Q ss_pred HHHHHhhhCCCCCHHHHHHH--------------HHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcc
Q psy12151 235 DIFSNFFISPLLKRDSIASE--------------MDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKN 300 (528)
Q Consensus 235 ~lla~~l~~P~f~~~~~~~e--------------k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~ 300 (528)
.+..+.+.+|.+.++.|..| +.+|.+|++....++..+++..+++.+|++..|+....|.+..|..
T Consensus 118 ~VYlDavf~PlL~~e~F~QEgwr~e~~~~~~l~~~GVVyNEMKGa~ss~~~~~~~~~~~slfp~~ty~~~SGG~P~~I~~ 197 (978)
T COG1026 118 SVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMKGAYSSGESVLSRAMQQSLFPGTTYGVNSGGDPKNIPD 197 (978)
T ss_pred HHHHHhhhCcccchHHHhhhhhccccCCCccceeeeEEeehhcccccCchhHHHHHHHHhhCCCccccccCCCCcccccc
Confidence 99999999999999999887 5678899999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHH-hcCCCCCCCCCCCCCcCCCcccCCCceEEE-E---
Q psy12151 301 TVDENELYAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEH-FSGIPSNESPKKTFSVETPFELDRWNRFYT-V--- 375 (528)
Q Consensus 301 it~~~~i~e~L~~f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~-f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~-~--- 375 (528)
++ .+++++||+++|+|+|+.+.++|+++++++...++++ |...+... ...+.+....+..+....... +
T Consensus 198 Lt-----yE~~r~FHkk~Y~pSN~~i~~yGni~~~~~L~~iee~~l~~~~k~~-~~~~i~~~~~~~~~~~~~~~ypi~~~ 271 (978)
T COG1026 198 LT-----YEEFRAFHKKHYHPSNCKIFVYGNIPTERLLDFIEEKVLRPFGKRE-LDVPIPDQKAFKKPRRKVLEYPISFD 271 (978)
T ss_pred cC-----HHHHHHHHHHhCCccceEEEEECCCCHHHHHHHHHHhhhccccccc-cCCCCCcccccCcccccceeeccCCC
Confidence 99 9999999999999999999999999999999999887 55554433 222212112333332222211 1
Q ss_pred eecCCcceEEEEEEcCCccccccCCHHHHHHHHHhCCCCChHHHHHHHcccc-ceeEeeeccccccccCcceEEEEEEEe
Q psy12151 376 KPVDDVNVLYMTWYTPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLA-IEIEAGYHESGFEYNHLYTLFQINVTL 454 (528)
Q Consensus 376 ~~~~~~~~l~l~f~~p~~~~~~~~~~l~vl~~iLg~~~~~sL~~~LRe~gla-ysv~a~~~~~~~~~~~~~g~f~i~~~~ 454 (528)
.....+..+.+.|.++...+.++..++.+|..+|-+...+-|.+.|-|.|+. +.++..+... .-...|.+.+.-
T Consensus 272 ~~de~q~~~~lsWl~~~~~d~~~~lal~vL~~iLl~~~asPl~~~liesglg~~~~~g~~~~~-----~~~~~f~v~~~g 346 (978)
T COG1026 272 EEDEDQGLLSLSWLGGSASDAEDSLALEVLEEILLDSAASPLTQALIESGLGFADVSGSYDSD-----LKETIFSVGLKG 346 (978)
T ss_pred CCCCceeEEEEEEecCCcccHHHHHHHHHHHHHHccCcccHHHHHHHHcCCCcccccceeccc-----cceeEEEEEecC
Confidence 1234567788889999988878899999999999987777788999988777 3333323211 334556655555
Q ss_pred ccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccc
Q psy12151 455 TDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNY 499 (528)
Q Consensus 455 ~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~f~~ 499 (528)
-+. ++++++.+.|+..|+.+.+.|+..+.++.++.++..+.+-
T Consensus 347 v~~--ek~~~~k~lV~~~L~~l~~~gi~~~~ie~~~~q~E~s~ke 389 (978)
T COG1026 347 VSE--EKIAKLKNLVLSTLKELVKNGIDKKLIEAILHQLEFSLKE 389 (978)
T ss_pred CCH--HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhh
Confidence 544 6999999999999999999999999999999999877663
No 11
>KOG2583|consensus
Probab=99.94 E-value=9.8e-24 Score=206.83 Aligned_cols=313 Identities=14% Similarity=0.137 Sum_probs=248.7
Q ss_pred eEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEEcChhhHHHHHHH
Q psy12151 158 LAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDI 236 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l~~~L~l 236 (528)
+.++.+.+++||+++| +++|++|++....++-|.+++. ..+-.-.+..||.++.++++|+..|.+++++++++-.|.+
T Consensus 43 is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sa-l~ivr~se~~GG~Lss~~tRe~~~~tvt~lrd~~~~~l~~ 121 (429)
T KOG2583|consen 43 ISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSA-LKIVRESEQLGGTLSSTATRELIGLTVTFLRDDLEYYLSL 121 (429)
T ss_pred ceEEEEEEecCccCCccccccHHHHHHHhcccCccccch-hhhhhhhHhhCceeeeeeecceEEEEEEEecccHHHHHHH
Confidence 9999999999999999 9999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHH-HHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHHHHHHHHHH
Q psy12151 237 FSNFFISPLLKRDSIASEM-DIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQ 315 (528)
Q Consensus 237 la~~l~~P~f~~~~~~~ek-~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~e~L~~f~ 315 (528)
|.+++.+|.|.+++++... ..+..++ ...+|.....+.+++.+|.+ .++.+.+..--.+.+++ .++|..|-
T Consensus 122 L~~V~~~paFkPwEl~D~~~~ti~~~l--~~~t~~~~a~e~lH~aAfRn-gLgnslY~p~~~vg~vs-----s~eL~~Fa 193 (429)
T KOG2583|consen 122 LGDVLDAPAFKPWELEDVVLATIDADL--AYQTPYTIAIEQLHAAAFRN-GLGNSLYSPGYQVGSVS-----SSELKDFA 193 (429)
T ss_pred HHHhhcccCcCchhhhhhhhhhhHHHh--hhcChHHHHHHHHHHHHHhc-ccCCcccCCcccccCcc-----HHHHHHHH
Confidence 9999999999999999888 5555444 46789999999999999987 78887776656788888 99999999
Q ss_pred HhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCcccCCCceEEEEeecCCcceEEEEEEcCCcc-
Q psy12151 316 KTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQ- 394 (528)
Q Consensus 316 ~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~f~~p~~~- 394 (528)
.++|...|++|+.+| ++++.|..+.+++ ..++.+....+. +..+..+..++ ......+++.+...+..
T Consensus 194 ~k~fv~gn~~lvg~n-vd~~~L~~~~~~~-~~~~~~~~~k~a---~a~~~gGe~Rk------~~~g~~~~v~vagegAAa 262 (429)
T KOG2583|consen 194 AKHFVKGNAVLVGVN-VDHDDLKQFADEY-APIRDGLPLKPA---PAKYSGGEARK------DARGNRVHVAVAGEGAAA 262 (429)
T ss_pred HHHhhccceEEEecC-CChHHHHHHHHHh-ccccCCCCCCCC---CccccCCcccc------ccCCceeEEEEecCcccc
Confidence 999999999999998 9999999999998 333333222221 11233443322 22344556666544432
Q ss_pred -ccccCCHHHHHHHHHhCCCC----ChHHHHHHHcc--ccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHH
Q psy12151 395 -QLYKTKPLDVLSWFIGHEGP----GSIMSYLRKKF--LAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMD 467 (528)
Q Consensus 395 -~~~~~~~l~vl~~iLg~~~~----~sL~~~LRe~g--laysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~ 467 (528)
..+...+..++.++||...+ .+++..+-..- .--++++... .| .+.|+|++++..+. .++.++++
T Consensus 263 ~~~k~~~a~av~~~~Lg~~~~~k~~t~~~~~aa~~a~~~~~s~sA~~a--~y---sDsGL~gv~~~~~~---~~a~~~v~ 334 (429)
T KOG2583|consen 263 GNLKVLAAQAVLLAALGNSAPVKRGTGLLSEAAGAAGEQGASASAFNA--PY---SDSGLFGVYVSAQG---SQAGKVVS 334 (429)
T ss_pred cchHHHHHHHHHHHHHhcccccccccchHHHHHhhccccCceeeeecc--cc---cCCceEEEEEEecC---ccHHHHHH
Confidence 23455677888899997553 56666665322 3334444443 44 78899999998876 48888999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhccc
Q psy12151 468 IIFQYLRLLSQSPISSEMYAEISNIHHIGFN 498 (528)
Q Consensus 468 ~i~~~l~~L~~~git~~el~~ak~~~~~~f~ 498 (528)
.+...|+..+..+++-.-.+.+.+++...+.
T Consensus 335 s~v~~lks~~~~~id~~~~~a~~~~l~~~~~ 365 (429)
T KOG2583|consen 335 SEVKKLKSALVSDIDNAKVKAAIKALKASYL 365 (429)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhh
Confidence 9998998888889998888888888877654
No 12
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=99.91 E-value=6.8e-24 Score=191.22 Aligned_cols=136 Identities=27% Similarity=0.444 Sum_probs=131.7
Q ss_pred eEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEEcChhhHHHHHHH
Q psy12151 158 LAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDI 236 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l~~~L~l 236 (528)
.+.+++++++|+++|| ..+|++|+++||+++|+.+++. .++.+.++.+|+.+++.|+.++|.|++++++++++.+|++
T Consensus 12 ~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~-~~l~~~l~~~G~~~~~~t~~d~t~~~~~~~~~~~~~~l~~ 90 (149)
T PF00675_consen 12 VVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSS-DELQEELESLGASFNASTSRDSTSYSASVLSEDLEKALEL 90 (149)
T ss_dssp EEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBH-HHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHH
T ss_pred EEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhh-hhhHHHhhhhccccceEecccceEEEEEEecccchhHHHH
Confidence 9999999999999999 9999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCC
Q psy12151 237 FSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGN 294 (528)
Q Consensus 237 la~~l~~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~ 294 (528)
|++++.+|.|++++|+++|..+..+++....+|..++.+.+++.+|.+|||+++..|+
T Consensus 91 l~~~~~~P~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f~~~p~~~~~~~~ 148 (149)
T PF00675_consen 91 LADMLFNPSFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAFRGHPYGNPLLGP 148 (149)
T ss_dssp HHHHHHSBGGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSGGGSHSS-T
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999998886
No 13
>KOG2019|consensus
Probab=99.90 E-value=2e-22 Score=208.00 Aligned_cols=335 Identities=19% Similarity=0.247 Sum_probs=264.2
Q ss_pred CCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHh-cCCccceEecCCeEEEEEE-cChhhHHHHHHHHHHhhhCCC
Q psy12151 169 SFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLST-RGGSSNASTEYETTTFYFD-VPEPHLKKSMDIFSNFFISPL 245 (528)
Q Consensus 169 s~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~-~G~~~na~t~~d~t~~~~~-~~~~~l~~~L~lla~~l~~P~ 245 (528)
.+..| +..|+.|++||...+|+.+||-.+-|-+.|.+ +..-+||+|..|+|.|-+. ..+.++..+.++.-+....|+
T Consensus 81 FrTpp~dstGiPHILEHtvLCGS~KYPvrdPFfkmLnrSLatFmNAfT~pD~T~yPfattN~kDf~NL~dVYLDAtffPk 160 (998)
T KOG2019|consen 81 FRTPPKDSTGIPHILEHTVLCGSRKYPVRDPFFKMLNRSLATFMNAFTAPDYTFYPFATTNTKDFYNLRDVYLDATFFPK 160 (998)
T ss_pred eecCCCccCCCchhhhhheeeccCcCcccChHHHHHHHHHHHHHhhccCCCcceeecccCChHHHHHHHHHhhhcccchH
Confidence 34566 78899999999999999999997777777653 3344599999999999986 556899999999999999999
Q ss_pred CCHHHHHHH------------------HHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHH
Q psy12151 246 LKRDSIASE------------------MDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENEL 307 (528)
Q Consensus 246 f~~~~~~~e------------------k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i 307 (528)
+.+.+|..| +.+|.+|++....+|...+.+.+++.+|+++.|+....|.+-.|-.++
T Consensus 161 lr~~dF~QEGWr~Eh~dpsd~~SpivfkGVVfNEMKG~~S~~~~if~~~~Qq~L~p~~tYgv~SGGDPl~IpdLt----- 235 (998)
T KOG2019|consen 161 LRKLDFQQEGWRLEHNDPSDPISPIVFKGVVFNEMKGQYSDPDYIFGMLFQQALFPENTYGVNSGGDPLDIPDLT----- 235 (998)
T ss_pred HHhhhhhhhcceeecCCCCCCcccceeeeeeeecccccccChhHHHHHHHHHhhCccccccccCCCCcccCcccc-----
Confidence 999999887 788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCcccCCCceEEEEee------cCCc
Q psy12151 308 YAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKP------VDDV 381 (528)
Q Consensus 308 ~e~L~~f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 381 (528)
.+++++||++||+|+|+.+...|+++++++..++..-|..........+... ..+|..+ ++++..-| -..+
T Consensus 236 ~eelk~FHr~~YHPSNAri~tYGn~Pl~~~l~~l~e~~~~~sk~~~s~kv~~-qk~f~kp--~rvve~~p~d~~~~p~Kq 312 (998)
T KOG2019|consen 236 YEELKEFHRQHYHPSNARIFTYGNFPLEDLLKQLEEDFSPFSKRELSSKVTF-QKLFDKP--RRVVEKGPADPGDLPKKQ 312 (998)
T ss_pred HHHHHHHHHhccCCCcceeEeecCchHHHHHHHHHHhhcccccccccCcccc-ccccccC--ceeeeecCCCCCCCccce
Confidence 9999999999999999999999999999999999988766544332211111 1233322 12222111 1235
Q ss_pred ceEEEEEEcCCccccccCCHHHHHHHHHhCCCCChHHHHHHHccccc--eeEeeeccccccccCcceEEEEEEEeccchh
Q psy12151 382 NVLYMTWYTPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAI--EIEAGYHESGFEYNHLYTLFQINVTLTDQGV 459 (528)
Q Consensus 382 ~~l~l~f~~p~~~~~~~~~~l~vl~~iLg~~~~~sL~~~LRe~glay--sv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~ 459 (528)
....+.|..+.+.+.++..++.+|++++-++.++-+++.|-|.|+-. ++.+++. +....+.|+|.+..-.+
T Consensus 313 ~~~s~s~L~~~p~d~~etfaL~~L~~Ll~~gpsSp~yk~LiESGLGtEfsvnsG~~-----~~t~~~~fsVGLqGvse-- 385 (998)
T KOG2019|consen 313 TKCSNSFLSNDPLDTYETFALKVLSHLLLDGPSSPFYKALIESGLGTEFSVNSGYE-----DTTLQPQFSVGLQGVSE-- 385 (998)
T ss_pred eEEEEEeecCCchhHHHHHHHHHHHHHhcCCCccHHHHHHHHcCCCcccccCCCCC-----cccccceeeeeeccccH--
Confidence 67778888888877778899999999999877777889999877764 4444443 22566788888887776
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHHccc
Q psy12151 460 DQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQY 518 (528)
Q Consensus 460 ~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~la~~l~~ 518 (528)
++++.+...|...++.|.+.|+..+.+++...++..+.+.+.-..--..+..+.....+
T Consensus 386 ediekve~lV~~t~~~lae~gfd~drieAil~qiEislk~qst~fGL~L~~~i~~~W~~ 444 (998)
T KOG2019|consen 386 EDIEKVEELVMNTFNKLAETGFDNDRIEAILHQIEISLKHQSTGFGLSLMQSIISKWIN 444 (998)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhhccccchhHHHHHHHhhhhcc
Confidence 69999999999999999999999999999999888887643222223334444444444
No 14
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=99.88 E-value=2.1e-21 Score=179.67 Aligned_cols=177 Identities=22% Similarity=0.326 Sum_probs=142.9
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCC---CCCCCCCcCCCcccCCCceEEEEeecCCcceE
Q psy12151 308 YAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNE---SPKKTFSVETPFELDRWNRFYTVKPVDDVNVL 384 (528)
Q Consensus 308 ~e~L~~f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 384 (528)
.++|++||++||+|+||+|+|+||++++++.++|+++|+.||... ...+.... .+........++..........+
T Consensus 4 ~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v 82 (184)
T PF05193_consen 4 LEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIEKYFGSLPKSSIPPKPKPRSPP-LPPSEPQGKEIVIPSKDESQSIV 82 (184)
T ss_dssp HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHHHHHTTSSHSCHGGSSSCSSSS-SSCGGSSEEEEEEEESSSSSEEE
T ss_pred HHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHHhhhhhhccccccccccccccc-ccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999764 22221111 11112222222222222268889
Q ss_pred EEEEEcCCccccccCCHHHHHHHHHhCCCCChHHHHHH-HccccceeEeeeccccccccCcceEEEEEEEeccchhccHH
Q psy12151 385 YMTWYTPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLR-KKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQ 463 (528)
Q Consensus 385 ~l~f~~p~~~~~~~~~~l~vl~~iLg~~~~~sL~~~LR-e~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~ 463 (528)
.++|+.|......+..++.++..+|++...++|+..|| ++|++|++.++... + .+.+.|.|.+.+++. +++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~l~~~lr~~~~l~y~v~~~~~~--~---~~~~~~~i~~~~~~~---~~~ 154 (184)
T PF05193_consen 83 SIAFPGPPIKDSKDYFALNLLSSLLGNGMSSRLFQELREKQGLAYSVSASNSS--Y---RDSGLFSISFQVTPE---NLD 154 (184)
T ss_dssp EEEEEEEETGTSTTHHHHHHHHHHHHCSTTSHHHHHHHTTTTSESEEEEEEEE--E---SSEEEEEEEEEEEGG---GHH
T ss_pred ccccccccccccchhhHHHHHHHHHhcCccchhHHHHHhccccceEEEeeeec--c---ccceEEEEEEEcCcc---cHH
Confidence 99999988755568899999999999988899999999 79999999998653 2 578999999999984 899
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy12151 464 HIMDIIFQYLRLLSQSPISSEMYAEISNIH 493 (528)
Q Consensus 464 ~v~~~i~~~l~~L~~~git~~el~~ak~~~ 493 (528)
++++.+.++|+.+++.|+++++|+++|+++
T Consensus 155 ~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 155 EAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 999999999999999999999999999875
No 15
>KOG0961|consensus
Probab=99.85 E-value=2.8e-19 Score=184.63 Aligned_cols=328 Identities=17% Similarity=0.220 Sum_probs=230.0
Q ss_pred eEEEEEEecccCCcCCCCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEEcC-hhhHHHHHHH
Q psy12151 158 LAALSLTIGVGSFCDGHIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVP-EPHLKKSMDI 236 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~-~~~l~~~L~l 236 (528)
++.-++.|..-.. +..|+.|-+||+.|+|+++||-..-|+.+-...=+..||.|+.|+|.|.++.. .+.+-.+|..
T Consensus 41 ~vhG~f~v~TEa~---~d~G~PHTLEHL~FMGSKkYP~kGvLd~~anr~l~dtNAwTDtD~T~YtLStag~dGFlklLPv 117 (1022)
T KOG0961|consen 41 MVHGAFSVVTEAD---SDDGLPHTLEHLVFMGSKKYPFKGVLDVIANRCLADTNAWTDTDHTAYTLSTAGSDGFLKLLPV 117 (1022)
T ss_pred ceeeeEEeeeeec---CCCCCchhHHHHhhhccccCCcccHHHHhhcchhcccccccccCcceEEeecccccchHHHhHH
Confidence 7777777665433 45799999999999999999994444444334447899999999999999855 5789999999
Q ss_pred HHHhhhCCCCCHHHHHHHH----------HHHHHHHHhccCChHHHHHHHHHHHcCC-CCCCCCCCCCChhhhcccccch
Q psy12151 237 FSNFFISPLLKRDSIASEM----------DIVDSEFQSSILNDTCRLEQLLATACTK-ENPAGKFVWGNLETLKNTVDEN 305 (528)
Q Consensus 237 la~~l~~P~f~~~~~~~ek----------~~v~~e~~~~~~~p~~~~~~~~~~~~~~-~~p~~~~~~G~~e~L~~it~~~ 305 (528)
+.+-+..|.+++++|..|. .+|.+|++.....-...+....++..|| .++|.....|-...|+.+|
T Consensus 118 y~dHiL~P~Ltdeaf~TEVyHI~geg~d~GVVySEMq~~es~~~~im~~~~~~~~yP~~sgY~~eTGG~~knLR~lt--- 194 (1022)
T KOG0961|consen 118 YIDHILTPMLTDEAFATEVYHITGEGNDAGVVYSEMQDHESEMESIMDRKTKEVIYPPFSGYAVETGGRLKNLRELT--- 194 (1022)
T ss_pred HHHhhcCcccchhhhhhheeeecCCCCccceeehhhhhhhcccchhhhhhhheeecCCCCCceeccCCChhhHHHhh---
Confidence 9999999999999998874 6788888888777777888888888884 6788888889999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCccc-------C--CCceEEEEe
Q psy12151 306 ELYAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFEL-------D--RWNRFYTVK 376 (528)
Q Consensus 306 ~i~e~L~~f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~ 376 (528)
.+.+|+||+++|+++||+++|+|.++++++.......-..|+......|+..+ .||.. + ...++-...
T Consensus 195 --~ekIR~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile~~s~vP~~~~-rPf~~tn~~~~i~e~t~~tVefp~ 271 (1022)
T KOG0961|consen 195 --LEKIRDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILEHMSTVPDHFP-RPFSFTNALSDIKESTVHTVEFPT 271 (1022)
T ss_pred --HHHHHHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhhccccCCCCCC-CCcccccCcccCCccceeeeecCC
Confidence 99999999999999999999999999999998887766555443322222111 12211 1 111111111
Q ss_pred ecCCcceEEEEEEcCCccccccCCHHHHHHHHHhCCCCChHHHHHH--HccccceeEeeeccccccccCcceEEEEEEEe
Q psy12151 377 PVDDVNVLYMTWYTPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLR--KKFLAIEIEAGYHESGFEYNHLYTLFQINVTL 454 (528)
Q Consensus 377 ~~~~~~~l~l~f~~p~~~~~~~~~~l~vl~~iLg~~~~~sL~~~LR--e~glaysv~a~~~~~~~~~~~~~g~f~i~~~~ 454 (528)
-+..+..+.++|..+++.+.+...++.+|..+|....-+-+-+.+- +--++.+++.+... .-.....+.+..
T Consensus 272 ~Des~G~v~~aW~g~s~sD~~t~~a~~vL~dyls~savapf~~~fVeieDP~assv~f~~~~------~vrc~i~L~f~g 345 (1022)
T KOG0961|consen 272 DDESRGAVEVAWFGHSPSDLETHSALHVLFDYLSNSAVAPFQKDFVEIEDPLASSVSFHIAE------GVRCDIRLNFAG 345 (1022)
T ss_pred cccccceEEEEEcCCCHHHhhhHHHHHHHHHHhccccccccccceEEecCccccceeeeeec------ccceeEEEeecC
Confidence 2334668999999999887777889999999999744333444444 56788888777643 122233334443
Q ss_pred ccchhccHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHhccccCCCCCc
Q psy12151 455 TDQGVDQIQHIMDIIFQYLRLL-SQSPISSEMYAEISNIHHIGFNYHSTKSS 505 (528)
Q Consensus 455 ~~~g~~~~~~v~~~i~~~l~~L-~~~git~~el~~ak~~~~~~f~~~~~~~~ 505 (528)
-| ++++-..--+.++.| ....++-+.+.....+.+-++....+.++
T Consensus 346 VP-----~EKi~~~~~k~l~~l~et~~iDm~Rm~~~i~~t~~~yL~nlE~n~ 392 (1022)
T KOG0961|consen 346 VP-----VEKIDECAPKFLDKLVETANIDMERMGYLIDQTILNYLVNLETNA 392 (1022)
T ss_pred Cc-----HHHhhhhhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcCC
Confidence 33 334444444445544 44457766655554444444444334444
No 16
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.43 E-value=4.8e-11 Score=131.04 Aligned_cols=321 Identities=15% Similarity=0.171 Sum_probs=216.7
Q ss_pred ceEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceE----ecC-------CeEEEEEE
Q psy12151 157 KLAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNAS----TEY-------ETTTFYFD 224 (528)
Q Consensus 157 ~~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~----t~~-------d~t~~~~~ 224 (528)
+.+.+.+.++. +.-.. ..+=+.-|...+.-.||++++- .++..+++.+-|.+++. ++. ....+.+.
T Consensus 547 ~i~yl~~~~~~-~~l~~~llpyL~L~~~~l~~lgt~~~~y-~e~~~~i~~~TGgis~~~~~~~~~~~~~~~~~~~~i~~K 624 (978)
T COG1026 547 GITYLRLYFDL-DMLPSELLPYLPLFAFALTNLGTETYSY-KELLNQIERHTGGISVSLSVDTDPGDDGEYRPSFSISGK 624 (978)
T ss_pred CeEEEEEEeec-CCCChhhhhhHHHHHHHHHhcCCCCcCH-HHHHHHHHHHhCCceeeEeeccCCCccccccceEEEEEE
Confidence 59999999999 44444 6777777777777799999998 78888888775544333 222 34578888
Q ss_pred cChhhHHHHHHHHHHhhhCCCC-CHHHHHHHHHHHHHHHHhccCC-hHHHHHHHHHHHcCCCCCCCCCCCC--Chhhhcc
Q psy12151 225 VPEPHLKKSMDIFSNFFISPLL-KRDSIASEMDIVDSEFQSSILN-DTCRLEQLLATACTKENPAGKFVWG--NLETLKN 300 (528)
Q Consensus 225 ~~~~~l~~~L~lla~~l~~P~f-~~~~~~~ek~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~p~~~~~~G--~~e~L~~ 300 (528)
+.....+.+++++.+++.++.| |.+-+.....+..+.+.....+ +...+........+....+.....| -.+-|+.
T Consensus 625 ~l~~k~~~~~~~i~~~l~~~~F~D~~Rlkell~q~~~~l~~~vr~sG~~~A~~~~~s~~~~~~~l~e~~~Gl~q~k~i~~ 704 (978)
T COG1026 625 ALRSKVEKLFELIREILANTDFHDRERLKELLEQYLSDLTSSVRNSGHSIASSLANSRLSSAGALKELLNGLSQVKFLRE 704 (978)
T ss_pred ehhhhhhHHHHHHHHHHhcCCcCcHHHHHHHHHHHHhhhHHhhhccchHHHHHHhhcccccchhHHHHhcChhHHHHHHH
Confidence 9999999999999999999999 6666666666666666555444 4455554444444433333222222 1222333
Q ss_pred ccc------chHHHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCC-----CCCCCCCCcCCCcccCCC
Q psy12151 301 TVD------ENELYAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSN-----ESPKKTFSVETPFELDRW 369 (528)
Q Consensus 301 it~------~~~i~e~L~~f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~-----~~~~~~~~~~~~~~~~~~ 369 (528)
+.. .+.|.+.|++.+++.+..+|+.+++.|+.+ .+.+.+++-|.++... ..+.+... +.+.....
T Consensus 705 l~~~~~~~~~~ei~~kL~~l~~~i~~~~n~~i~i~~~~~--~~~~~~e~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 780 (978)
T COG1026 705 LSSNFEENFEKEIADKLQALRKKIFQTNNLRIAIIGDID--KILDLLENPLLKFLEHLLPGFELPTPPKN--PHLDLISS 780 (978)
T ss_pred HHHhhcccccHHHHHHHHHHHHHHhhcCceEEEEecChh--hhHHHHHHHhhhhhcccCcccccCCCCCC--cchhhhcc
Confidence 221 225678899999999999999889998765 3344444544443311 11111111 11111110
Q ss_pred ceEEEEeecCCcceEEEEEEcCC-ccccccCCHHHHHHHHHhCCCCChHHHHHHHccccceeEeeeccccccccCcceEE
Q psy12151 370 NRFYTVKPVDDVNVLYMTWYTPP-VQQLYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLF 448 (528)
Q Consensus 370 ~~~~~~~~~~~~~~l~l~f~~p~-~~~~~~~~~l~vl~~iLg~~~~~sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f 448 (528)
.....+.| .+.+...++|++-. .+.++++.++.|++.+|+. +-|+..+|++|.||++++... ...|.|
T Consensus 781 ~~~~~ii~-~p~a~~~l~fs~~~~~y~hpd~~~l~vls~~L~~---~~lw~~IR~~GGAYGa~as~~-------~~~G~f 849 (978)
T COG1026 781 LSEATIIP-SPVAYNALAFSIGGLPYTHPDYAALQVLSEYLGS---GYLWNKIREKGGAYGASASID-------ANRGVF 849 (978)
T ss_pred ccceEEec-cHHHHHHHhhhccCCCCCCccchHHHHHHHHhcc---chhHHHHHhhccccccccccc-------cCCCeE
Confidence 11122222 12345555665432 2356789999999999995 677899999999999998875 566899
Q ss_pred EEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccc
Q psy12151 449 QINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFN 498 (528)
Q Consensus 449 ~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~f~ 498 (528)
.+...-+| ++-+.++...+.++.|..+.+++.++++++--......
T Consensus 850 ~f~sYRDP----n~~kt~~v~~~~v~~l~s~~~~~~d~~~~ilg~i~~~d 895 (978)
T COG1026 850 SFASYRDP----NILKTYKVFRKSVKDLASGNFDERDLEEAILGIISTLD 895 (978)
T ss_pred EEEecCCC----cHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcccc
Confidence 99888888 89999999999999999999999999999887776654
No 17
>PTZ00432 falcilysin; Provisional
Probab=99.30 E-value=1.5e-09 Score=126.52 Aligned_cols=322 Identities=12% Similarity=0.096 Sum_probs=206.5
Q ss_pred ceEEEEEEecccCCcCCCCCChHHHHHHHhc-cCCCCCCChhHHHHHHHhcCCccceE----ec------------CCeE
Q psy12151 157 KLAALSLTIGVGSFCDGHIPGLAHFLEHMVF-MGSEKYPEENDFDAFLSTRGGSSNAS----TE------------YETT 219 (528)
Q Consensus 157 ~~v~i~l~v~~Gs~~e~~~~Glahllehllf-~Gt~~~~~~~~l~~~L~~~G~~~na~----t~------------~d~t 219 (528)
+.+++.+.+......+ +......++..++. .||++++. .++...+..+-|.+++. ++ ....
T Consensus 680 Gi~y~~~~fdl~~l~~-e~~~yl~L~~~~l~~~gT~~~s~-~el~~~i~~~tGg~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (1119)
T PTZ00432 680 GILYLDFAFSLDSLTV-DELKYLNLFKALLKENGTDKLSS-EEFTYKREKNLGGLSASTAFYSETNNLTYDDPYNGVGYL 757 (1119)
T ss_pred CeEEEEEEecCCCCCH-HHHhhHHHHHHHHHhcCCCCCCH-HHHHHHHHHhCCCeEEEEEEeccccccccCcccccceEE
Confidence 5999999998876443 34444455555554 79999998 88999998876666543 22 2246
Q ss_pred EEEEEcChhhHHHHHHHHHHhhhCCCCCHHH-HHHHHHHHHHHHHhccCC-hHHHHHHHHHHHcCCCCCCCCCCCC--Ch
Q psy12151 220 TFYFDVPEPHLKKSMDIFSNFFISPLLKRDS-IASEMDIVDSEFQSSILN-DTCRLEQLLATACTKENPAGKFVWG--NL 295 (528)
Q Consensus 220 ~~~~~~~~~~l~~~L~lla~~l~~P~f~~~~-~~~ek~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~p~~~~~~G--~~ 295 (528)
.+.+.+..++++.+++++.+++.++.|+... +....+...+.+.....+ ....+...+..-+....-+.....| ..
T Consensus 758 ~v~~k~l~~~~~~~~~l~~eil~~~~f~d~~rl~~il~~~~~~~~~~~~~~Gh~~A~~~~~s~~S~~~~~~e~~~G~~~~ 837 (1119)
T PTZ00432 758 NVRAKVLKHKVNEMVDIVLEALKDADFSNSKKGVEILKRKINGMKTVFSSKGHKFALKRMKSKFSVSDYADELVNGYSQL 837 (1119)
T ss_pred EEEEEEhhhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCHHHHHHHHhcCHHHH
Confidence 7888899999999999999999999998765 666666666666655542 2222222221111100001111111 12
Q ss_pred hhhcccc------cchHHHHHHHHHHHhhcCCCCcEEEEEcCCC-HHHHHHHHHHHhcCCCCC----C--CCCCCCCc--
Q psy12151 296 ETLKNTV------DENELYAALRNLQKTHYVANHMTLALQARLD-LPTLEAWVVEHFSGIPSN----E--SPKKTFSV-- 360 (528)
Q Consensus 296 e~L~~it------~~~~i~e~L~~f~~~~y~~~~~~LvivGdi~-~d~l~~lv~~~f~~ip~~----~--~~~~~~~~-- 360 (528)
.-|+.+. +-..|.+.|...+++.+.++||.+.|+|+.+ .+.+.+.+...+..++.. . .....+..
T Consensus 838 ~fl~~l~~~~~e~~~~~v~~~L~~i~~~i~~~~~l~~~vt~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 917 (1119)
T PTZ00432 838 LFLKETLVPLAEKDWSKVESKLNEIRNKLLSMKNLTVNVTGDSELLDSLLDDSTTFLKKLSSTFKENDNKSSDKVWVKEV 917 (1119)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCcCCcEEEEEeCHHHHHHHHHHHHHHHHhccccccccccccccccccccc
Confidence 2222221 1123577888999999999999999999884 567777777777777532 1 11111110
Q ss_pred --CCCcccCCCceEEEEeecCCcceEEEEEEcCCccccccCCHHHHHHHHHhCCCCChHHHHHHHccccceeEeeecccc
Q psy12151 361 --ETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESG 438 (528)
Q Consensus 361 --~~~~~~~~~~~~~~~~~~~~~~~l~l~f~~p~~~~~~~~~~l~vl~~iLg~~~~~sL~~~LRe~glaysv~a~~~~~~ 438 (528)
...+.... .....+.|. ....+..+.+. ....++...++.|+..+|.. +=|+..||.+|.||++++...
T Consensus 918 ~~~~~~~~~~-~~e~~~~p~-~V~yv~~~~~~-~~~~~~~~~~l~Vl~~~L~~---~yLw~~IR~~GGAYG~~~~~~--- 988 (1119)
T PTZ00432 918 LDKKLMESVD-KNEFIVLPT-RVNFVGMGGKL-FDKSDKVDGSFQVIVHYLKN---SYLWKTVRMSLGAYGVFADLL--- 988 (1119)
T ss_pred ccccccCCcc-cceEEEccC-ceeEEEEeccc-ccCCCccCHHHHHHHHHHcc---ccchHHHcccCCccccCCccC---
Confidence 00011111 122233332 22233333221 12223457899999999995 668899999999999986552
Q ss_pred ccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhccc
Q psy12151 439 FEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQ--SPISSEMYAEISNIHHIGFN 498 (528)
Q Consensus 439 ~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~--~git~~el~~ak~~~~~~f~ 498 (528)
..|.|.++..=+| ++.+.++...+..+-|+. ..++++++++++-.....+.
T Consensus 989 -----~~G~~~f~SYRDP----n~~~Tl~~f~~~~~~l~~~~~~~~~~~l~~~iig~~~~~D 1041 (1119)
T PTZ00432 989 -----YTGHVIFMSYADP----NFEKTLEVYKEVASALREAAETLTDKDLLRYKIGKISNID 1041 (1119)
T ss_pred -----CCCeEEEEEecCC----CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccC
Confidence 2488888777777 899999999999999988 56999999999887777765
No 18
>KOG2019|consensus
Probab=99.13 E-value=1.9e-08 Score=105.66 Aligned_cols=319 Identities=12% Similarity=0.133 Sum_probs=203.1
Q ss_pred ceEEEEEEecccCCcCCCCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCcc--ceEecCCe--------EEEEEEcC
Q psy12151 157 KLAALSLTIGVGSFCDGHIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSS--NASTEYET--------TTFYFDVP 226 (528)
Q Consensus 157 ~~v~i~l~v~~Gs~~e~~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~--na~t~~d~--------t~~~~~~~ 226 (528)
+++++++.+.-|+.-+.-.+=+.-|++.++-.||+..+- .++.+.+..+-|.+ +..+..+. ..|...+.
T Consensus 581 gi~Y~r~~~~l~~~p~eL~PylPlfc~sll~lGt~~lsf-~el~qqI~rkTGGiS~~p~~~s~~~~d~p~~~i~~~~~~l 659 (998)
T KOG2019|consen 581 GITYTRVVFDLNSLPEELLPYLPLFCQSLLNLGTGDLSF-VELEQQIGRKTGGISVSPLVSSDDGMDEPELGIVFSGSML 659 (998)
T ss_pred ceEEEEEeeccccCcHHhhcchHHHHHHHHhcCCCcccH-HHHHHHhhhhcCceeecceeccCCCCCccceeEEechhhh
Confidence 599999999999954434667888999999999999887 88888888764443 33332221 34555677
Q ss_pred hhhHHHHHHHHHHhhhCCCCCHHH-HHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhc---ccc
Q psy12151 227 EPHLKKSMDIFSNFFISPLLKRDS-IASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLK---NTV 302 (528)
Q Consensus 227 ~~~l~~~L~lla~~l~~P~f~~~~-~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~---~it 302 (528)
..+++.+++++..+|.++.|...+ |...++...+++.....+....+...-....+.....-....|-.+.|+ .+.
T Consensus 660 ~rn~~dlfel~n~il~e~~f~n~dkfkvlvk~s~s~~~n~i~dsGH~~A~~rs~a~l~~ag~i~EqlgGl~ql~fl~~L~ 739 (998)
T KOG2019|consen 660 DRNADDLFELWNKILQETCFTNQDKFKVLVKQSASRMTNGIADSGHGFAAARSAAMLTPAGWISEQLGGLSQLEFLHRLE 739 (998)
T ss_pred cCChhHHHHHHHHHhcccCcccHHHHHHHHHHHHHHhhccCCcccchhHhhhhhcccCcccchHhHhcchHHHHHHHHHH
Confidence 788999999999999999998654 5556666666666655444332222211111111111011122222221 111
Q ss_pred -----cchHHHHHHHHHHHhhcCCCCcEEEEEcC-CCHHHHHHHHHHHhcCCCCCCCCCCC--CCcCCCcccCCCceEEE
Q psy12151 303 -----DENELYAALRNLQKTHYVANHMTLALQAR-LDLPTLEAWVVEHFSGIPSNESPKKT--FSVETPFELDRWNRFYT 374 (528)
Q Consensus 303 -----~~~~i~e~L~~f~~~~y~~~~~~LvivGd-i~~d~l~~lv~~~f~~ip~~~~~~~~--~~~~~~~~~~~~~~~~~ 374 (528)
.-..|.+.|-+..+-....++|.+.|..+ ..+..+++.|++++..+|......+. +....|.. ...+..
T Consensus 740 ~~~d~d~~~i~~kL~eIrk~ll~~ng~~~~itAd~~q~~~vEkav~kFl~~lp~e~p~g~~st~d~r~p~~---~~~i~~ 816 (998)
T KOG2019|consen 740 EKVDNDWEPIVSKLTEIRKSLLNTNGMIVNITADPKQLTNVEKAVEKFLDSLPRENPSGSKSTWDARLPLR---SEAIRV 816 (998)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEecCcccchhHHHHHHHHHHhccccCCCCCccCccccCCCC---ceeEEE
Confidence 11233455556655556789998888765 67889999999999999843211111 11111111 112222
Q ss_pred EeecCCcceEEEEEEcC----CccccccCCHHHHHHHHHhCCCCChHHHHHHHccccceeEeeeccccccccCcceEEEE
Q psy12151 375 VKPVDDVNVLYMTWYTP----PVQQLYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQI 450 (528)
Q Consensus 375 ~~~~~~~~~l~l~f~~p----~~~~~~~~~~l~vl~~iLg~~~~~sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i 450 (528)
..|. ..+.|... .++.+++..++.+++.+|.. .=|..++|++|-||+-++.+. ...|+|++
T Consensus 817 ~~P~-----fqvnyvgka~~~vpyt~~d~asl~vlS~~lt~---k~Lh~evRekGGAYGgg~s~~-------sh~GvfSf 881 (998)
T KOG2019|consen 817 VIPT-----FQVNYVGKAGLGVPYTHPDGASLQVLSKLLTN---KWLHDEVREKGGAYGGGCSYS-------SHSGVFSF 881 (998)
T ss_pred eccc-----cchhhhhhhcccccCCCCCCcHHHHHHHHHHH---HHHHHHHHHhcCccCCccccc-------cccceEEE
Confidence 3331 11112111 12245678899999999995 456689999999999888775 56789998
Q ss_pred EEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccc
Q psy12151 451 NVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFN 498 (528)
Q Consensus 451 ~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~f~ 498 (528)
+..=+| +.-+.++.....-+-++...++++.+++||--......
T Consensus 882 ~SYRDp----n~lktL~~f~~tgd~~~~~~~~~~dldeAkl~~f~~VD 925 (998)
T KOG2019|consen 882 YSYRDP----NPLKTLDIFDGTGDFLRGLDVDQQDLDEAKLGTFGDVD 925 (998)
T ss_pred EeccCC----chhhHHHhhcchhhhhhcCCccccchhhhhhhhccccc
Confidence 888777 66677777777777777778999999999876555433
No 19
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.4e-06 Score=94.43 Aligned_cols=328 Identities=12% Similarity=0.022 Sum_probs=203.2
Q ss_pred ceEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEEcChhhHHHHHH
Q psy12151 157 KLAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMD 235 (528)
Q Consensus 157 ~~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l~~~L~ 235 (528)
+++.+.+.++.--.... ...=+..|+..+++....++.. -...-|.+++...+.....+++++.++.+..++.
T Consensus 525 PK~~v~~~irsp~~~~s~r~~Vl~~l~~~la~dal~~~~y------~A~~aG~sfs~~~~~~Gl~ltisGft~~lp~L~~ 598 (937)
T COG1025 525 PKASVSLAIRSPHASRSPRNQVLTELYAYLANDALDKLSY------QASLAGLSFSLAANSNGLDLTISGFTQRLPQLLR 598 (937)
T ss_pred CcceeEEEEeCcccccCHHHHHHHHHHHHHHHHHHHhhhh------HHHhcceEEEeecCCCceEEEeeccccchHHHHH
Confidence 46666666654333322 2222333344444432222221 1334566777777778889999999999999999
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHHHHHHHHH
Q psy12151 236 IFSNFFISPLLKRDSIASEMDIVDSEFQSSI-LNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNL 314 (528)
Q Consensus 236 lla~~l~~P~f~~~~~~~ek~~v~~e~~~~~-~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~e~L~~f 314 (528)
.|-+.+..-.++++.|...|+.+.++++... ..|..++...+..++-+.+. ...--.+.|..++ .+++..|
T Consensus 599 ~~l~~l~~~~~~~~~f~~~K~~~~~~~~~a~~~~p~~~~~~~l~~l~~~~~~---s~~e~~~~l~~v~-----~~e~~~f 670 (937)
T COG1025 599 AFLDGLFSLPVDEDRFEQAKSQLSEELKNALTGKPYRQALDGLTGLLQVPYW---SREERRNALESVS-----VEEFAAF 670 (937)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHhhhhhCCCCc---CHHHHHHHhhhcc-----HHHHHHH
Confidence 9999999999999999999999999999865 67888888888777765433 1112345677777 9999999
Q ss_pred HHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCc--ccCCCceEEEEeecCCcceEEEEEEcCC
Q psy12151 315 QKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPF--ELDRWNRFYTVKPVDDVNVLYMTWYTPP 392 (528)
Q Consensus 315 ~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~l~f~~p~ 392 (528)
....+.+....+.|.|+++.+++.++++..-..+++.+... +.. +.+ ..+.......+.+..+.+-..+.+....
T Consensus 671 ~~~l~~~~~lE~lv~Gn~~~~da~~l~~~~~~~l~~~~s~~--~~~-~~~~~~~~~~~~~e~~~~~~~~an~~i~~~~~~ 747 (937)
T COG1025 671 RDTLLNGVHLEMLVLGNLTEADATNLAETLQKKLPAIGSTW--YRN-PSVYLLKGGTRIFETVGGESDSANAAILYPQQY 747 (937)
T ss_pred HHHhhhccceeeeeeccchHHHHHHHHHHHHhhhcccCCcc--cCC-CceeccCCCeeEeeeccCCcccccceeEecccc
Confidence 99999999999999999999999988886655555443211 111 111 1111111122222233333333333221
Q ss_pred ccccccCCHHHHHHHHHhCCCCChHHHHHH-HccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHH
Q psy12151 393 VQQLYKTKPLDVLSWFIGHEGPGSIMSYLR-KKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQ 471 (528)
Q Consensus 393 ~~~~~~~~~l~vl~~iLg~~~~~sL~~~LR-e~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~ 471 (528)
. ......++.+|+....--.|..|| |..|-|-|.++.... . ...| ..|.++....+.....+-+..+++
T Consensus 748 ~-----~~~~~a~s~Ll~~l~~~~ff~~LRTkeQLGY~Vfs~~~~v--~--~~~g-i~f~vqS~~~~p~~L~~r~~~F~~ 817 (937)
T COG1025 748 D-----EIKSSALSSLLGQLIHPWFFDQLRTKEQLGYAVFSGPREV--G--RTPG-IGFLVQSNSKSPSYLLERINAFLE 817 (937)
T ss_pred c-----hHHHHHHHHHHHHHHhHHhHHHhhhhhhcceEEEecceee--c--Cccc-eEEEEeCCCCChHHHHHHHHHHHH
Confidence 1 122333444444322356779999 889999998887532 1 1122 223444433322234444455555
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHHH
Q psy12151 472 YLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELS 513 (528)
Q Consensus 472 ~l~~L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~la 513 (528)
.+..... +.++++|+..|+.+.+++.. ...+....+..+-
T Consensus 818 ~~~~~l~-~ms~e~Fe~~k~alin~il~-~~~nl~e~a~r~~ 857 (937)
T COG1025 818 TAEPELR-EMSEEDFEQIKKALINQILQ-PPQNLAEEASRLW 857 (937)
T ss_pred HHHHHHH-hCCHHHHHHHHHHHHHHHHc-cCCCHHHHHHHHH
Confidence 5544443 68999999999999999874 4445444444444
No 20
>KOG0959|consensus
Probab=98.69 E-value=2.1e-05 Score=88.50 Aligned_cols=312 Identities=13% Similarity=0.073 Sum_probs=196.8
Q ss_pred eEEEEEEecc-cCCcCCCCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEEcChhhHHHHHHH
Q psy12151 158 LAALSLTIGV-GSFCDGHIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDI 236 (528)
Q Consensus 158 ~v~i~l~v~~-Gs~~e~~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l~~~L~l 236 (528)
++.+.+.+.. |....|...+++++...++.--. .+..-.....|..+....+.....+.+.+-++.+..+++.
T Consensus 533 ka~~~~~~~~p~~~~~~~~~~l~~l~~~~l~d~l------~E~~Y~A~~aGl~~~~~~s~~G~~~~v~Gfnekl~~ll~~ 606 (974)
T KOG0959|consen 533 KAYTKFDFICPGATQSPLNSVLSTLYVRLLKDQL------NEYLYPALLAGLTYSLSSSSKGVELRVSGFNEKLPLLLEK 606 (974)
T ss_pred hhheeeeecCcccccCHHHHHHHHHHHHHHHHHH------hHHHHHHHhccceEEeeecCCceEEEEeccCcccHHHHHH
Confidence 4444444433 34444455667777776665211 2233334567778888888888899999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHHHHHHHHHH
Q psy12151 237 FSNFFISPLLKRDSIASEMDIVDSEFQS-SILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQ 315 (528)
Q Consensus 237 la~~l~~P~f~~~~~~~ek~~v~~e~~~-~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~e~L~~f~ 315 (528)
+.+++.+-..+++.|+..++.+..+++. ...+|..++.+... ++...+-|.... -.+.+..++ .+++..|-
T Consensus 607 ~~~~~~~f~~~~~rf~iike~~~~~~~n~~~~~p~~~a~~~~~-lll~~~~W~~~e--~~~al~~~~-----le~~~~F~ 678 (974)
T KOG0959|consen 607 VVQMMANFELDEDRFEIIKELLKRELRNHAFDNPYQLANDYLL-LLLEESIWSKEE--LLEALDDVT-----LEDLESFI 678 (974)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHH-HHhhccccchHH--HHHHhhccc-----HHHHHHHH
Confidence 9999999999999999999999999999 55666665555544 444444443322 345667777 99999999
Q ss_pred HhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCC--CCCCCCc----CCCcccCCCceEEEEee-c--CCcceEEE
Q psy12151 316 KTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNES--PKKTFSV----ETPFELDRWNRFYTVKP-V--DDVNVLYM 386 (528)
Q Consensus 316 ~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~-~--~~~~~l~l 386 (528)
..++++--|.+.|.||++.+++.++++..+..+ .... +.+.+.. ...+.-+.....+.... + ...+.+.+
T Consensus 679 ~~~~~~~~~e~~i~GN~te~~A~~l~~~v~d~l-~~~~~~~~p~~~~~~~~~~~~~lp~G~~~~~~~~~n~~~~ns~i~~ 757 (974)
T KOG0959|consen 679 SEFLQPFHLELLIHGNLTEKEALQLLKSVLDIL-KSAAPNSRPLFRSEHLPRREIQLPNGDYYFYRHLLNKTDDNSCIEV 757 (974)
T ss_pred HHHhhhhheEEEEecCcchHHHHHHHHHHHhhh-hccCCCCccccccccCcccceeccCCceEEEEcccccCCCCceEEE
Confidence 999999999999999999999999866655555 2111 1111110 11111111122222211 2 23455666
Q ss_pred EEEcCCccccccCCHHHHHHHHHhCCCCChHHHHHH-Hc--cccceeEeeeccccccccCcceEEEEEEEeccchhccHH
Q psy12151 387 TWYTPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLR-KK--FLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQ 463 (528)
Q Consensus 387 ~f~~p~~~~~~~~~~l~vl~~iLg~~~~~sL~~~LR-e~--glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~ 463 (528)
++.+ ...+......+.++..++. .-+|..|| +. |++++..+... .+...+.|.++.+ .+...++
T Consensus 758 ~~Q~-~~~~~~~~~~~~L~~~li~----ep~Fd~LRTkeqLGYiv~~~~r~~-------~G~~~~~i~Vqs~-~~~~~le 824 (974)
T KOG0959|consen 758 YYQI-GVQDTRDNAVLGLLEQLIK----EPAFDQLRTKEQLGYIVSTGVRLN-------YGTVGLQITVQSE-KSVDYLE 824 (974)
T ss_pred EEEc-ccchhHHHHHHHHHHHHhc----cchHHhhhhHHhhCeEeeeeeeee-------cCcceeEEEEccC-CCchHHH
Confidence 6664 3333445566777777777 47799999 54 55555444442 2333334444433 3334555
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccc
Q psy12151 464 HIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFN 498 (528)
Q Consensus 464 ~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~f~ 498 (528)
.-+..+++.+..... ..++++++.-+..+...+.
T Consensus 825 ~rIe~fl~~~~~~i~-~m~~e~Fe~~~~~lI~~~~ 858 (974)
T KOG0959|consen 825 ERIESFLETFLEEIV-EMSDEEFEKHKSGLIASKL 858 (974)
T ss_pred HHHHHHHHHHHHHHH-hcchhhhhhhHHHHHHHHh
Confidence 555555555554443 4678888877776666554
No 21
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=98.23 E-value=3.8e-05 Score=78.30 Aligned_cols=169 Identities=20% Similarity=0.324 Sum_probs=100.0
Q ss_pred eEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEEcChhh-HHHHHH
Q psy12151 158 LAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPH-LKKSMD 235 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~-l~~~L~ 235 (528)
-+.+++. +.|.-.|- +..|+||||||++.. |.. .+|+ .||+|++.+..|.....+.. -.+++.
T Consensus 19 DIYlGIs-~FGFe~DI~~iLGiAHLLEHILIs----FD~----~~F~------ANASTaRsYMSFWC~si~g~~~~DAvr 83 (590)
T PF03410_consen 19 DIYLGIS-NFGFENDIGEILGIAHLLEHILIS----FDS----SKFL------ANASTARSYMSFWCKSIRGRTYIDAVR 83 (590)
T ss_pred ceEEeec-ccccccchHHHHhHHHHHHHHeee----cch----HHhh------cccchhhhhhhhhhhhccCCChhHHHH
Confidence 5566553 56676777 899999999999973 333 3433 48999999999998766533 445555
Q ss_pred HHHHhhh-C----CCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHHHHH
Q psy12151 236 IFSNFFI-S----PLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAA 310 (528)
Q Consensus 236 lla~~l~-~----P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~e~ 310 (528)
.+..+|. + -.|+...++...+++.+|+-- .+....+.+.+.-+. +|.-|. .|...-|.++++ ++.-
T Consensus 84 tliSWFF~~g~Lk~~F~~~~i~~hikELENEYYF--RnEvfHCmDvLtfL~-gGDLYN---GGRi~ML~~l~~---i~~m 154 (590)
T PF03410_consen 84 TLISWFFDNGKLKDNFSRSKIKNHIKELENEYYF--RNEVFHCMDVLTFLG-GGDLYN---GGRIDMLNNLND---IRNM 154 (590)
T ss_pred HHHHHhhcCCcccccccHhHHHHHHHHHhhhhhh--hhhHHHHHHHHHHhc-CCcccC---CchHHHHhhhHH---HHHH
Confidence 5544443 3 347777776666666665533 333334445544333 444443 245555555431 1222
Q ss_pred HHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCC
Q psy12151 311 LRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNES 353 (528)
Q Consensus 311 L~~f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~ 353 (528)
|..=-+ .....|. +++|-.++ +.+..++++.||.+|.-+.
T Consensus 155 L~~RM~-~I~Gpni-VIFVk~l~-~~~l~lL~~TFGtLP~cP~ 194 (590)
T PF03410_consen 155 LSNRMH-RIIGPNI-VIFVKELN-PNILSLLSNTFGTLPSCPL 194 (590)
T ss_pred HHHHHH-hhcCCcE-EEEEeccC-HHHHHHHHHhcCCCCCCcc
Confidence 222222 2233444 44444577 5677899999999997654
No 22
>PHA03081 putative metalloprotease; Provisional
Probab=98.06 E-value=0.0001 Score=75.26 Aligned_cols=166 Identities=18% Similarity=0.291 Sum_probs=101.4
Q ss_pred eEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEEcCh-hhHHHHHH
Q psy12151 158 LAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPE-PHLKKSMD 235 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~-~~l~~~L~ 235 (528)
-+.+++. +.|.-.|- +..|+||++||++.. +.. ..| -.||+|.+.+..|...... ..-.+|+.
T Consensus 19 diy~gi~-~fgfe~di~~~lg~ahllehili~----fd~----~~f------~anast~r~ymsfwc~sirg~~y~DAvr 83 (595)
T PHA03081 19 DIYLGIS-NFGFENDIGEILGIAHLLEHILIS----FDS----SKF------VANASTARSYMSFWCKSIRGRSYIDAIR 83 (595)
T ss_pred ceEEeec-ccccccchHHHHhHHHHHHHHeee----cch----HHh------cccchhhhhhHhHhhHhhcCCchHHHHH
Confidence 4555543 56676777 899999999999973 332 333 2478899999999876554 33467777
Q ss_pred HHHHhhhCCC-----CCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHHHHH
Q psy12151 236 IFSNFFISPL-----LKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAA 310 (528)
Q Consensus 236 lla~~l~~P~-----f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~e~ 310 (528)
.+..+|..+. |+...++...+++.+|+-- .+....+.+.+.-+ .+|.-|. .|...-|.+++ +
T Consensus 84 tliSWFF~~~~Lr~~F~~~~ik~~ikELENEYYF--RnEvfHCmDvLTfL-~gGDLYN---GGRi~ML~~l~-------~ 150 (595)
T PHA03081 84 TLISWFFDNGKLKDNFSLSKIRNHIKELENEYYF--RNEVFHCMDVLTFL-GGGDLYN---GGRIDMLDNLN-------D 150 (595)
T ss_pred HHHHHhccCCccccccchhhHHHHHHHHhhhhhh--hhhhHHHHHHHHHh-cCCcccC---CchHHHHhhhH-------H
Confidence 7777777654 6666666666666555532 33334445555433 3444443 25555666544 3
Q ss_pred HHHHHHhh---cCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCC
Q psy12151 311 LRNLQKTH---YVANHMTLALQARLDLPTLEAWVVEHFSGIPSNES 353 (528)
Q Consensus 311 L~~f~~~~---y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~ 353 (528)
++....+. ....|. ++++-.++ +.+..++.+.||.+|.-+.
T Consensus 151 i~~~L~~RM~~I~Gpni-VIFVk~ln-~~~l~lL~~TFGtLP~~P~ 194 (595)
T PHA03081 151 VRDMLSNRMHRISGPNI-VIFVKELN-PNTLSLLNNTFGTLPSCPE 194 (595)
T ss_pred HHHHHHHHHHhhcCCcE-EEEEeccC-HHHHHHHHHhcCCCCCCcc
Confidence 33332222 233444 44444577 5677899999999997654
No 23
>KOG0961|consensus
Probab=98.02 E-value=0.00021 Score=75.92 Aligned_cols=266 Identities=10% Similarity=0.055 Sum_probs=171.3
Q ss_pred ecCCeEEEEEEcChhhHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCC--
Q psy12151 214 TEYETTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFV-- 291 (528)
Q Consensus 214 t~~d~t~~~~~~~~~~l~~~L~lla~~l~~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~-- 291 (528)
+-.+..++.+.|.++..+.....+..++..-.|+++.+....+....++..++.+...++.......+|+...+....
T Consensus 631 ~~~~lvn~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD~~Ri~~~~~~~l~~i~~~KRdg~~vlss~~~~~lY~~~slk~s~d~ 710 (1022)
T KOG0961|consen 631 LYDRLVNLRIKVGADKYPLLVKWIQIFLQGVVFDPSRIHQCAQKLLGEIRDRKRDGCTVLSSAVASMLYGKNSLKISFDE 710 (1022)
T ss_pred cchhheeEEEEEccCCcchhHHHHHHHhhhhccCHHHHHHHHHHHHhhhhhhhcCccEehHHHHHHHHhcccchhhcccH
Confidence 445778999999999999999999999999999999999999999999999998888888888888889776654321
Q ss_pred CCChhhhcccc-----cchHHHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCC------CCCCCCCCC-
Q psy12151 292 WGNLETLKNTV-----DENELYAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPS------NESPKKTFS- 359 (528)
Q Consensus 292 ~G~~e~L~~it-----~~~~i~e~L~~f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~------~~~~~~~~~- 359 (528)
.--..-++.+. ..+.|.+.+....+-....+.+.+-|+||++- |......|.. -..|.-.+.
T Consensus 711 L~~Ek~l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n~~~ihvvgDI~k------id~~~~~Wn~l~~~~~~~nP~~~f~~ 784 (1022)
T KOG0961|consen 711 LVLEKLLEEISKDVMNNPEAILEKLEQMRSYALFSNGVNIHVVGDIDK------IDPKMLSWNWLQADPRFGNPGHQFSA 784 (1022)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcceEEEEEeehhc------CCccccCchhhhcCcccCCchhhccc
Confidence 11111222222 12233333333222122457788999999871 1111222211 110100000
Q ss_pred ---c--CCCcc-cCCCceEEEEeecCCcceEEEEEEcCCccccccCCHHHHHHHHHhCCCCChHHHHHHHccccceeEee
Q psy12151 360 ---V--ETPFE-LDRWNRFYTVKPVDDVNVLYMTWYTPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAG 433 (528)
Q Consensus 360 ---~--~~~~~-~~~~~~~~~~~~~~~~~~l~l~f~~p~~~~~~~~~~l~vl~~iLg~~~~~sL~~~LRe~glaysv~a~ 433 (528)
. ..+.. ++..+..+...|....+.+....++...+.++...+..++..+|+- ..|-++..+|..||||+++..
T Consensus 785 tf~~~~~~s~e~gsssk~~~I~~p~sESs~l~~sip~~~~w~dpel~~~~l~~~YL~~-~eGPfW~~IRG~GLAYGanm~ 863 (1022)
T KOG0961|consen 785 TFEAGENVSLELGSSSKELLIGVPGSESSFLYQSIPLDANWNDPELIPAMLFGQYLSQ-CEGPFWRAIRGDGLAYGANMF 863 (1022)
T ss_pred ccccCcccceeccCCcceeEecCCCccccceeeecccccccCCcchhHHHHHHHHHHh-cccchhhhhcccchhccceeE
Confidence 0 01111 1111222222343334433333344444556788999999999994 778899999999999999888
Q ss_pred eccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhcc
Q psy12151 434 YHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQS--PISSEMYAEISNIHHIGF 497 (528)
Q Consensus 434 ~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~--git~~el~~ak~~~~~~f 497 (528)
.. .+.+.|++.+..-+ ++.++.+.-.++++.+..+ .+++.+++-||......+
T Consensus 864 ~~-------~d~~~~~~~iyr~a----d~~kaye~~rdiV~~~vsG~~e~s~~~~egAk~s~~~~~ 918 (1022)
T KOG0961|consen 864 VK-------PDRKQITLSIYRCA----DPAKAYERTRDIVRKIVSGSGEISKAEFEGAKRSTVFEM 918 (1022)
T ss_pred Ee-------ccCCEEEEEeecCC----cHHHHHHHHHHHHHHHhcCceeecHHHhccchHHHHHHH
Confidence 75 34456666666554 7788888888888888763 389999998887665443
No 24
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=97.12 E-value=0.0055 Score=59.89 Aligned_cols=93 Identities=11% Similarity=0.203 Sum_probs=66.1
Q ss_pred ceEEEEEEecccCCcCCCCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecC-----------CeEEEEEEc
Q psy12151 157 KLAALSLTIGVGSFCDGHIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEY-----------ETTTFYFDV 225 (528)
Q Consensus 157 ~~v~i~l~v~~Gs~~e~~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~-----------d~t~~~~~~ 225 (528)
+++++.+.+..+.......+=+.-|..-+-..||++++. .++...+..+-|.+++.+.. -...+++.+
T Consensus 90 GI~Y~~l~fdl~~l~~e~l~yl~Ll~~ll~~lgT~~~sy-~el~~~i~~~tGGis~~~~~~~~~~~~~~~~~~l~is~k~ 168 (248)
T PF08367_consen 90 GIVYVRLYFDLSDLPEEDLPYLPLLTDLLGELGTKNYSY-EELSNEIDLYTGGISFSIEVYTDYDDDDKYRPYLVISAKC 168 (248)
T ss_dssp TEEEEEEEEE-TTS-CCCHCCHHHHHHHCCCS-BSSS-H-HHHHHHHHHHSSEEEEEEEEEEEECTECCCEEEEEEEEEE
T ss_pred CeEEEEEEecCCCCCHHHHHhHHHHHHHHHhCCCCCCCH-HHHHHHHHHhCCCeEEEeeeccCCCCccceeEEEEEEEEe
Confidence 599999999998554335555555555333489999998 88999998876666555421 124677889
Q ss_pred ChhhHHHHHHHHHHhhhCCCCCHHH
Q psy12151 226 PEPHLKKSMDIFSNFFISPLLKRDS 250 (528)
Q Consensus 226 ~~~~l~~~L~lla~~l~~P~f~~~~ 250 (528)
..++++.+++++.+++.+|.|+...
T Consensus 169 L~~~~~~~~~ll~eil~~~~f~d~~ 193 (248)
T PF08367_consen 169 LDEKLDEAFELLSEILTETDFDDKE 193 (248)
T ss_dssp EGGGHHHHHHHHHHHHHCB-TT-HH
T ss_pred HhhhHHHHHHHHHHHHhccCCCcHH
Confidence 9999999999999999999999775
No 25
>KOG2067|consensus
Probab=94.21 E-value=1 Score=45.95 Aligned_cols=166 Identities=9% Similarity=0.105 Sum_probs=116.9
Q ss_pred eEEEEEEecccCCcCCCCCChHHHHHHHhccCCCCCCChh---H-----HHH------HHHhcCCccceEecCCeEEEEE
Q psy12151 158 LAALSLTIGVGSFCDGHIPGLAHFLEHMVFMGSEKYPEEN---D-----FDA------FLSTRGGSSNASTEYETTTFYF 223 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~~~~Glahllehllf~Gt~~~~~~~---~-----l~~------~L~~~G~~~na~t~~d~t~~~~ 223 (528)
..++.+.+.+=++.+++. ++..+-.|+.-|.+.|++.. . +.+ |+...-+--..+.+.--.++++
T Consensus 264 ltHv~lg~Eg~~~~deD~--v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhsy~DtGlfgi~~ 341 (472)
T KOG2067|consen 264 LTHVVLGFEGCSWNDEDF--VALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHSYSDTGLFGIYA 341 (472)
T ss_pred eeeeeEeeccCCCCChhH--HHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhccccCCceeEEec
Confidence 788899998888877632 45555567776766666521 1 111 2233334446667777788999
Q ss_pred EcChhhHHHHHHHHHHhhhC--CCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhccc
Q psy12151 224 DVPEPHLKKSMDIFSNFFIS--PLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNT 301 (528)
Q Consensus 224 ~~~~~~l~~~L~lla~~l~~--P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~i 301 (528)
++++....+++.+++.-+.+ -..++++++|.|.++.+-+-.++++-.-.+-+.-++.+-.+. ..++---.+.|+++
T Consensus 342 s~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~~g~--rk~p~e~~~~Ie~l 419 (472)
T KOG2067|consen 342 SAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLTTGE--RKPPDEFIKKIEQL 419 (472)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHhccC--cCCHHHHHHHHHhc
Confidence 99999999999999877665 359999999999999999999998877667777766654322 23333345678888
Q ss_pred ccchHHHHHHHHHHHhhcCCCCcEEEEEcCCC
Q psy12151 302 VDENELYAALRNLQKTHYVANHMTLALQARLD 333 (528)
Q Consensus 302 t~~~~i~e~L~~f~~~~y~~~~~~LvivGdi~ 333 (528)
+ .+||.++-.+.++ .+.+++-.||+.
T Consensus 420 t-----~~DI~rva~kvlt-~~p~va~~Gd~~ 445 (472)
T KOG2067|consen 420 T-----PSDISRVASKVLT-GKPSVAAFGDGT 445 (472)
T ss_pred C-----HHHHHHHHHHHhc-CCceeccCCccc
Confidence 8 9999999988865 445566666654
No 26
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=93.46 E-value=1.5 Score=46.45 Aligned_cols=131 Identities=10% Similarity=0.075 Sum_probs=88.4
Q ss_pred hHHHHHHHhcCCccceEe--cC----CeEEEEEEcChh----hHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHHHHh
Q psy12151 197 NDFDAFLSTRGGSSNAST--EY----ETTTFYFDVPEP----HLKKSMDIFSNFFISP--LLKRDSIASEMDIVDSEFQS 264 (528)
Q Consensus 197 ~~l~~~L~~~G~~~na~t--~~----d~t~~~~~~~~~----~l~~~L~lla~~l~~P--~f~~~~~~~ek~~v~~e~~~ 264 (528)
.-+...-++.|..+++++ +. ....++..+... ..+.+-+.+..+.... .++++++++.+..+...+-.
T Consensus 291 rLf~~~re~~glay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~ 370 (438)
T COG0612 291 RLFQELREKRGLAYSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLL 370 (438)
T ss_pred HHHHHHHHhcCceeeeccccccccccCCceEEEEecCCChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhh
Confidence 345555556676665552 21 222333344322 2333333333443333 49999999999999999999
Q ss_pred ccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHHHHHHHHHHHhhcCCCCcEEEEEcCCCH
Q psy12151 265 SILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQKTHYVANHMTLALQARLDL 334 (528)
Q Consensus 265 ~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~e~L~~f~~~~y~~~~~~LvivGdi~~ 334 (528)
..++|............+.+.+... .--.+.|++++ .++|.++.++++.+.+++++++|+...
T Consensus 371 ~~~s~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~vt-----~~dv~~~a~~~~~~~~~~~~~~~p~~~ 433 (438)
T COG0612 371 SLDSPSSIAELLGQYLLLGGSLITL--EELLERIEAVT-----LEDVNAVAKKLLAPENLTIVVLGPEKA 433 (438)
T ss_pred ccCCHHHHHHHHHHHHHhcCCccCH--HHHHHHHHhcC-----HHHHHHHHHHhcCCCCcEEEEEccccc
Confidence 9999998888777777664433221 12457889999 999999999999999999999998653
No 27
>KOG0960|consensus
Probab=88.50 E-value=13 Score=38.23 Aligned_cols=166 Identities=9% Similarity=0.083 Sum_probs=109.7
Q ss_pred eEEEEEEecccCCcCCCCCChHHHHHHHh------ccCCCCCCChhHHHHHHHhcC-Cc-c-ceEecCCe---EEEEEEc
Q psy12151 158 LAALSLTIGVGSFCDGHIPGLAHFLEHMV------FMGSEKYPEENDFDAFLSTRG-GS-S-NASTEYET---TTFYFDV 225 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~~~~Glahllehll------f~Gt~~~~~~~~l~~~L~~~G-~~-~-na~t~~d~---t~~~~~~ 225 (528)
.+.+++.|.|=++..|+ -++.++...+ +.|++.... ..|.+.+.... +. + +..|.+.- -++++-+
T Consensus 270 ~a~~AiAVEG~~w~~pD--~~~l~van~iiG~wdr~~g~g~~~~-s~La~~~~~~~l~~sfqsFnt~YkDTGLwG~y~V~ 346 (467)
T KOG0960|consen 270 LAHIAIAVEGVSWAHPD--YFALMVANTIIGNWDRTEGGGRNLS-SRLAQKIQQDQLCHSFQSFNTSYKDTGLWGIYFVT 346 (467)
T ss_pred hhheeeeEecCCcCCcc--HHHHHHHHHHhhhhhcccCCccCCc-cHHHHHHHHHHHHHHHhhhhcccccccceeEEEEe
Confidence 88999999888888772 1344444443 345555554 56666655433 21 1 23333333 3566666
Q ss_pred -ChhhHHHHHHHHHHhhh--CCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccc
Q psy12151 226 -PEPHLKKSMDIFSNFFI--SPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTV 302 (528)
Q Consensus 226 -~~~~l~~~L~lla~~l~--~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it 302 (528)
....++.++..+..-.. ....++.+++|.|+.+...+-..++...-.+...-++++..+... ++.--.+.|.+++
T Consensus 347 ~~~~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lkt~Lll~ldgttpi~ediGrqlL~~Grri--~l~El~~rId~vt 424 (467)
T KOG0960|consen 347 DNLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLSLDGTTPIAEDIGRQLLTYGRRI--PLAELEARIDAVT 424 (467)
T ss_pred cChhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhhcCCcC--ChHHHHHHHhhcc
Confidence 55666666554433222 237999999999999999998887765556666667766654321 2222346788999
Q ss_pred cchHHHHHHHHHHHhhcCCCCcEEEEEcCCC
Q psy12151 303 DENELYAALRNLQKTHYVANHMTLALQARLD 333 (528)
Q Consensus 303 ~~~~i~e~L~~f~~~~y~~~~~~LvivGdi~ 333 (528)
.++++++-.+++--....++.+|++.
T Consensus 425 -----~~~Vr~va~k~iyd~~iAia~vG~ie 450 (467)
T KOG0960|consen 425 -----AKDVREVASKYIYDKDIAIAAVGPIE 450 (467)
T ss_pred -----HHHHHHHHHHHhhcCCcceeeecccc
Confidence 99999999999988899999999875
No 28
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=88.24 E-value=9.4 Score=33.54 Aligned_cols=123 Identities=6% Similarity=0.017 Sum_probs=71.7
Q ss_pred cCCcceEEEEEEcCCccccc-cCCHHHHHHHHHhCCCC--C--hHHHHHHHccccceeEeeeccccccccCcceEEEEEE
Q psy12151 378 VDDVNVLYMTWYTPPVQQLY-KTKPLDVLSWFIGHEGP--G--SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINV 452 (528)
Q Consensus 378 ~~~~~~l~l~f~~p~~~~~~-~~~~l~vl~~iLg~~~~--~--sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~ 452 (528)
..+...+.+.|..-...... ..-...++.+++..+.. + .+...|...|..+++.+.. +. ..+++
T Consensus 9 ~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~l~~~l~~~G~~~~~~t~~---------d~--t~~~~ 77 (149)
T PF00675_consen 9 GSPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDELQEELESLGASFNASTSR---------DS--TSYSA 77 (149)
T ss_dssp TSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHHHHHHHHHTTCEEEEEEES---------SE--EEEEE
T ss_pred CCCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhhhHHHhhhhccccceEecc---------cc--eEEEE
Confidence 33444555555444333322 33567788888776422 1 2446666778777554442 23 34555
Q ss_pred EeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHHccc
Q psy12151 453 TLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQY 518 (528)
Q Consensus 453 ~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~la~~l~~ 518 (528)
.+.+ ++.+++++.+.+.+. .-.++++++++.|......+.. ...++...+.+......+
T Consensus 78 ~~~~---~~~~~~l~~l~~~~~---~P~f~~~~~~~~r~~~~~ei~~-~~~~~~~~~~~~l~~~~f 136 (149)
T PF00675_consen 78 SVLS---EDLEKALELLADMLF---NPSFDEEEFEREREQILQEIEE-IKENPQELAFEKLHSAAF 136 (149)
T ss_dssp EEEG---GGHHHHHHHHHHHHH---SBGGCHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred EEec---ccchhHHHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHh
Confidence 6665 366666665555443 3358999999999988888774 455665555555544433
No 29
>KOG1832|consensus
Probab=78.51 E-value=1 Score=50.18 Aligned_cols=10 Identities=30% Similarity=0.265 Sum_probs=4.9
Q ss_pred CCCChHHHHH
Q psy12151 174 HIPGLAHFLE 183 (528)
Q Consensus 174 ~~~Glahlle 183 (528)
...|=..|.+
T Consensus 1464 d~~~D~df~~ 1473 (1516)
T KOG1832|consen 1464 DILIDGDFME 1473 (1516)
T ss_pred cCCCChHHHH
Confidence 3444455554
No 30
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=75.30 E-value=1.1 Score=46.30 Aligned_cols=11 Identities=36% Similarity=0.597 Sum_probs=5.3
Q ss_pred HHHHHHHHHHc
Q psy12151 506 VDYVEELSLHM 516 (528)
Q Consensus 506 ~~~~~~la~~l 516 (528)
+.++.+|+.-|
T Consensus 429 AERMrELGL~m 439 (458)
T PF10446_consen 429 AERMRELGLEM 439 (458)
T ss_pred HHHHHHHHHHH
Confidence 44555555444
No 31
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=68.70 E-value=1.5e+02 Score=33.59 Aligned_cols=121 Identities=7% Similarity=-0.011 Sum_probs=69.7
Q ss_pred CcceEEEEEEcCCccccc-cCCHHHHHHHHHhCCCCC-----hHHHHHHHccccceeEeeeccccccccCcceEEEEEEE
Q psy12151 380 DVNVLYMTWYTPPVQQLY-KTKPLDVLSWFIGHEGPG-----SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVT 453 (528)
Q Consensus 380 ~~~~l~l~f~~p~~~~~~-~~~~l~vl~~iLg~~~~~-----sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~ 453 (528)
+...+.+.|..-+..... ..-..+++.++|-.|... .+...|-+.|-.++++... +... +++.
T Consensus 20 p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~---------d~T~--y~~~ 88 (696)
T TIGR02110 20 KRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLE---------RTTA--FFFE 88 (696)
T ss_pred CEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcC---------CeEE--EEEE
Confidence 334444555543332211 344678888888764321 2445666777766555443 2233 3445
Q ss_pred eccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHHccc
Q psy12151 454 LTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQY 518 (528)
Q Consensus 454 ~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~la~~l~~ 518 (528)
+.+ ++.++++..+.+.+ ..--++++++++.|+.....++. ..+++...+......+.+
T Consensus 89 v~~---~~l~~aL~lLaD~l---~~P~f~eeeierEr~vvl~Ei~~-~~ddp~~~~~~~l~~~l~ 146 (696)
T TIGR02110 89 LPA---AALAAGLARLCDML---ARPLLTAEDQQREREVLEAEYIA-WQNDADTLREAALLDALQ 146 (696)
T ss_pred ecH---HHHHHHHHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHcC
Confidence 554 36555555444333 33458999999999998888874 456666666665555443
No 32
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=62.88 E-value=3.3 Score=42.93 Aligned_cols=10 Identities=20% Similarity=0.086 Sum_probs=4.2
Q ss_pred eEEEEEEEec
Q psy12151 446 TLFQINVTLT 455 (528)
Q Consensus 446 g~f~i~~~~~ 455 (528)
|..-|-..+.
T Consensus 387 gaIDIVkGLE 396 (458)
T PF10446_consen 387 GAIDIVKGLE 396 (458)
T ss_pred ccccceechh
Confidence 3344444443
No 33
>KOG0943|consensus
Probab=60.37 E-value=6.8 Score=45.38 Aligned_cols=22 Identities=18% Similarity=0.706 Sum_probs=15.4
Q ss_pred ccHHHHHHHHHHHHHHHHcCCC
Q psy12151 460 DQIQHIMDIIFQYLRLLSQSPI 481 (528)
Q Consensus 460 ~~~~~v~~~i~~~l~~L~~~gi 481 (528)
.++.-+.++++..|..+.+.++
T Consensus 2142 ~~VAlVadA~fhfik~~~eqpi 2163 (3015)
T KOG0943|consen 2142 KHVALVADALFHFIKAMNEQPI 2163 (3015)
T ss_pred hHHHHHHHHHHHHHHhcccCcc
Confidence 4666677777777777766665
No 34
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=53.13 E-value=99 Score=29.96 Aligned_cols=98 Identities=11% Similarity=0.186 Sum_probs=60.0
Q ss_pred EEEEeecCCcceEEEEEEcCCccccccCCHHHHHHHHHhCCCCChHH-HHHH----H--ccccceeEeeeccccccccCc
Q psy12151 372 FYTVKPVDDVNVLYMTWYTPPVQQLYKTKPLDVLSWFIGHEGPGSIM-SYLR----K--KFLAIEIEAGYHESGFEYNHL 444 (528)
Q Consensus 372 ~~~~~~~~~~~~l~l~f~~p~~~~~~~~~~l~vl~~iLg~~~~~sL~-~~LR----e--~glaysv~a~~~~~~~~~~~~ 444 (528)
.+...+..+..++.+.|.++.... .+..-+.++..+|+.-|.+.+- ..|- . -|+..++.+..... .....
T Consensus 82 ~~~~~~TnGI~Y~~l~fdl~~l~~-e~l~yl~Ll~~ll~~lgT~~~sy~el~~~i~~~tGGis~~~~~~~~~~--~~~~~ 158 (248)
T PF08367_consen 82 LFHEQPTNGIVYVRLYFDLSDLPE-EDLPYLPLLTDLLGELGTKNYSYEELSNEIDLYTGGISFSIEVYTDYD--DDDKY 158 (248)
T ss_dssp EEEE---TTEEEEEEEEE-TTS-C-CCHCCHHHHHHHCCCS-BSSS-HHHHHHHHHHHSSEEEEEEEEEEEEC--TECCC
T ss_pred EEEEcCCCCeEEEEEEecCCCCCH-HHHHhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCeEEEeeeccCCC--Cccce
Confidence 334445567789999999987653 3567789999999987766542 3332 1 24444444433221 11244
Q ss_pred ceEEEEEEEeccchhccHHHHHHHHHHHHHH
Q psy12151 445 YTLFQINVTLTDQGVDQIQHIMDIIFQYLRL 475 (528)
Q Consensus 445 ~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~ 475 (528)
...|.|++.+-. +++++++..+.++|..
T Consensus 159 ~~~l~is~k~L~---~~~~~~~~ll~eil~~ 186 (248)
T PF08367_consen 159 RPYLVISAKCLD---EKLDEAFELLSEILTE 186 (248)
T ss_dssp EEEEEEEEEEEG---GGHHHHHHHHHHHHHC
T ss_pred eEEEEEEEEeHh---hhHHHHHHHHHHHHhc
Confidence 567888888887 4899999988888754
No 35
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=51.60 E-value=1.1e+02 Score=26.94 Aligned_cols=96 Identities=11% Similarity=0.083 Sum_probs=55.8
Q ss_pred eEEEEEEecccCCcCCCCCChHHHHHHHhccCCCCCCChhHHHHHHH-hcCCcc--ceEec--C--CeEEEEEEcChhhH
Q psy12151 158 LAALSLTIGVGSFCDGHIPGLAHFLEHMVFMGSEKYPEENDFDAFLS-TRGGSS--NASTE--Y--ETTTFYFDVPEPHL 230 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~~~~Glahllehllf~Gt~~~~~~~~l~~~L~-~~G~~~--na~t~--~--d~t~~~~~~~~~~l 230 (528)
...+.+.+.+.............++.+++..+. . ..|...|. ..|... +++.. . ....+.+.+.+.++
T Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~-s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~~~~~~~~~ 153 (184)
T PF05193_consen 79 QSIVSIAFPGPPIKDSKDYFALNLLSSLLGNGM----S-SRLFQELREKQGLAYSVSASNSSYRDSGLFSISFQVTPENL 153 (184)
T ss_dssp SEEEEEEEEEEETGTSTTHHHHHHHHHHHHCST----T-SHHHHHHHTTTTSESEEEEEEEEESSEEEEEEEEEEEGGGH
T ss_pred ccccccccccccccccchhhHHHHHHHHHhcCc----c-chhHHHHHhccccceEEEeeeeccccceEEEEEEEcCcccH
Confidence 445555555544422234566778888887652 2 34666666 555333 33322 2 23455566666677
Q ss_pred HHHHHHHHHhhhC---CCCCHHHHHHHHHHH
Q psy12151 231 KKSMDIFSNFFIS---PLLKRDSIASEMDIV 258 (528)
Q Consensus 231 ~~~L~lla~~l~~---P~f~~~~~~~ek~~v 258 (528)
..+++.+.+.+.. -.|++++|++.|+++
T Consensus 154 ~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 154 DEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 7777766665543 249999999988753
No 36
>KOG2038|consensus
Probab=51.03 E-value=6.8 Score=43.41 Aligned_cols=11 Identities=36% Similarity=0.477 Sum_probs=5.1
Q ss_pred hhhhhcccCCC
Q psy12151 113 MEQESEESGNE 123 (528)
Q Consensus 113 ~~~~~~~~~~~ 123 (528)
++++.+|+++|
T Consensus 894 ~e~~~~Ed~dE 904 (988)
T KOG2038|consen 894 EEDGGEEDDDE 904 (988)
T ss_pred cccccccccch
Confidence 44444455444
No 37
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=48.53 E-value=75 Score=27.68 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=47.6
Q ss_pred hHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 416 SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 416 sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
++...|.++||+....... +.- ...+.+|+.|.+-..++..........+.. ++++++.+...+.+..
T Consensus 65 ~~v~~Le~~GlV~r~~~~~---------DrR--~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~-~l~~ee~~~l~~~l~~ 132 (144)
T PRK03573 65 RTLDQLEEKGLISRQTCAS---------DRR--AKRIKLTEKAEPLISEVEAVINKTRAEILH-GISAEEIEQLITLIAK 132 (144)
T ss_pred HHHHHHHHCCCEeeecCCC---------CcC--eeeeEEChHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 4556778899988754332 222 235677888877777777777666666665 8999999988887664
No 38
>KOG1832|consensus
Probab=47.05 E-value=10 Score=42.83 Aligned_cols=8 Identities=50% Similarity=0.903 Sum_probs=3.8
Q ss_pred hhhhhccc
Q psy12151 18 RHYKLLNH 25 (528)
Q Consensus 18 ~~~~~~~~ 25 (528)
|.|+++.|
T Consensus 1291 RTF~lLh~ 1298 (1516)
T KOG1832|consen 1291 RTFKLLHS 1298 (1516)
T ss_pred HHHHHHhc
Confidence 45555443
No 39
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=45.56 E-value=69 Score=22.62 Aligned_cols=50 Identities=14% Similarity=0.227 Sum_probs=41.6
Q ss_pred CCCChhHHHHHHHhcCCccceEecCCeEEEEEEcChhhHHHHHHHHHHhh
Q psy12151 192 KYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDIFSNFF 241 (528)
Q Consensus 192 ~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l~~~L~lla~~l 241 (528)
.|+....+..+|+.+++.+--..-.+...+.+.++.+.++.+.+.|.++.
T Consensus 4 ~Y~~~~~v~~~l~~~~~~i~~~~y~~~V~~~v~v~~~~~~~f~~~l~~~t 53 (56)
T PF09186_consen 4 DYSQYGKVERLLEQNGIEIVDEDYTDDVTLTVAVPEEEVEEFKAQLTDLT 53 (56)
T ss_dssp -CCCHHHHHHHHHHTTTEEEEEEECTTEEEEEEEECCCHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHCCCEEEcceecceEEEEEEECHHHHHHHHHHHHHHc
Confidence 35566778899999999997666667799999999999999999988764
No 40
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=44.39 E-value=94 Score=27.14 Aligned_cols=69 Identities=13% Similarity=0.087 Sum_probs=44.5
Q ss_pred ChHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHH
Q psy12151 415 GSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQ-YLRLLSQSPISSEMYAEISNIH 493 (528)
Q Consensus 415 ~sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~-~l~~L~~~git~~el~~ak~~~ 493 (528)
+++.+.|.++||++...... +.-. ..+.++++|.+-.+++...+.. ....+.+ ++++++++...+.+
T Consensus 72 sr~l~~Le~~GlI~R~~~~~---------DrR~--~~l~LT~~G~~~~~~~~~~~~~~~~~~l~~-~ls~ee~~~l~~~L 139 (144)
T PRK11512 72 TRMLDRLVCKGWVERLPNPN---------DKRG--VLVKLTTSGAAICEQCHQLVGQDLHQELTK-NLTADEVATLEHLL 139 (144)
T ss_pred HHHHHHHHHCCCEEeccCcc---------cCCe--eEeEEChhHHHHHHHHHHHHHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 35667788899998654332 2222 3456788776555665555543 4445554 89999999988876
Q ss_pred Hh
Q psy12151 494 HI 495 (528)
Q Consensus 494 ~~ 495 (528)
..
T Consensus 140 ~k 141 (144)
T PRK11512 140 KK 141 (144)
T ss_pred HH
Confidence 53
No 41
>PRK10870 transcriptional repressor MprA; Provisional
Probab=38.74 E-value=1.2e+02 Score=27.82 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=50.0
Q ss_pred ChHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy12151 415 GSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHH 494 (528)
Q Consensus 415 ~sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~ 494 (528)
+++...|-++||+....... +.- ...+.+|++|.+-++++.....+.+..+.+ ++++++.+...+.+.
T Consensus 89 sr~v~rLe~kGlV~R~~~~~---------DrR--~~~v~LT~~G~~~~~~i~~~~~~~~~~~~~-~ls~~e~~~l~~~L~ 156 (176)
T PRK10870 89 TRIADELEKRGWIERRESDN---------DRR--CLHLQLTEKGHEFLREVLPPQHNCLHQLWS-ALSTTEKDQLEQITR 156 (176)
T ss_pred HHHHHHHHHCCCEEecCCCC---------CCC--eeEEEECHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Confidence 34567888899987654322 112 235678888888888888888888887765 899999988877665
Q ss_pred hc
Q psy12151 495 IG 496 (528)
Q Consensus 495 ~~ 496 (528)
.-
T Consensus 157 kl 158 (176)
T PRK10870 157 KL 158 (176)
T ss_pred HH
Confidence 43
No 42
>COG1854 LuxS LuxS protein involved in autoinducer AI2 synthesis [Signal transduction mechanisms]
Probab=38.33 E-value=2.2e+02 Score=25.49 Aligned_cols=113 Identities=11% Similarity=0.106 Sum_probs=59.2
Q ss_pred cceEEEEEEcCCccccccCCHHHHHHHHHhCCCCChHHHHHHHc--cccceeEeeeccccccccCcceEEEEEEEeccch
Q psy12151 381 VNVLYMTWYTPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLRKK--FLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQG 458 (528)
Q Consensus 381 ~~~l~l~f~~p~~~~~~~~~~l~vl~~iLg~~~~~sL~~~LRe~--glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g 458 (528)
.+.+-|.|..|.... -....+.-|.+++.+ .+|.+ |...-+..+... -.+| |.+.+..++
T Consensus 33 It~fDiRf~qPNke~-m~~~~iHTlEHL~A~--------~iRnh~~g~~~iID~SPMG------CrTG-FYm~l~G~~-- 94 (161)
T COG1854 33 ITKFDIRFCQPNKEI-MPPAGIHTLEHLLAG--------FIRNHLNGNVEIIDISPMG------CRTG-FYMILIGTP-- 94 (161)
T ss_pred EEEeEEEEecCChhh-CCccchhhHHHHHHH--------HHHhcccCceeEEEecCcc------cccc-eEEEEECCC--
Confidence 456778888887652 255678888888885 67754 333333333321 2334 444555555
Q ss_pred hccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHHHH
Q psy12151 459 VDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSL 514 (528)
Q Consensus 459 ~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~la~ 514 (528)
+.+++++++...++.+.. ..+++++=.+....-+.+.....+..-+|+..+..
T Consensus 95 --~~~~i~~~~~~~m~dvl~-~~~~~~IP~~ne~qCG~y~~HsL~~Ak~~a~~~L~ 147 (161)
T COG1854 95 --TSQDIADVLEATMKDVLK-VQDQEEIPGANEKQCGNYKDHSLEGAKEIARKFLA 147 (161)
T ss_pred --CHHHHHHHHHHHHHHHHc-ccccccCCccChhhccchhhcCHHHHHHHHHHHHH
Confidence 566677777777766654 12223332333333344443333333444444443
No 43
>KOG2652|consensus
Probab=37.30 E-value=26 Score=35.24 Aligned_cols=12 Identities=8% Similarity=-0.108 Sum_probs=7.8
Q ss_pred ceEEEEEEeccc
Q psy12151 157 KLAALSLTIGVG 168 (528)
Q Consensus 157 ~~v~i~l~v~~G 168 (528)
+-+-+|.+-++-
T Consensus 304 ~nvVvCqyDKV~ 315 (348)
T KOG2652|consen 304 QNVVVCQYDKVN 315 (348)
T ss_pred ceeEEEeeeeec
Confidence 466777776663
No 44
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=36.54 E-value=25 Score=42.68 Aligned_cols=16 Identities=19% Similarity=-0.130 Sum_probs=9.1
Q ss_pred eEEEEEEecccCCcCC
Q psy12151 158 LAALSLTIGVGSFCDG 173 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~ 173 (528)
...+-..+.+|.-++-
T Consensus 205 ~~d~f~~~e~g~~d~~ 220 (2849)
T PTZ00415 205 KTDCFKFIEAGAGDDV 220 (2849)
T ss_pred ccceeeeccCCCCCch
Confidence 3445556667766554
No 45
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=33.75 E-value=21 Score=39.84 Aligned_cols=16 Identities=6% Similarity=0.063 Sum_probs=8.6
Q ss_pred cCCCHHHHHHHHHHHh
Q psy12151 330 ARLDLPTLEAWVVEHF 345 (528)
Q Consensus 330 Gdi~~d~l~~lv~~~f 345 (528)
+.++.-++...|...+
T Consensus 397 ~~lSA~D~v~al~ALL 412 (622)
T PF02724_consen 397 GKLSASDVVYALTALL 412 (622)
T ss_pred CceeHHHHHHHHHHHh
Confidence 5555555555555544
No 46
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=32.11 E-value=15 Score=32.74 Aligned_cols=6 Identities=50% Similarity=0.805 Sum_probs=2.6
Q ss_pred EEecCC
Q psy12151 81 IQLKNG 86 (528)
Q Consensus 81 ~~L~NG 86 (528)
++|..|
T Consensus 90 f~L~~G 95 (149)
T PF03066_consen 90 FRLKCG 95 (149)
T ss_dssp EEEEES
T ss_pred EEEEec
Confidence 344444
No 47
>KOG0943|consensus
Probab=31.89 E-value=24 Score=41.21 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=9.8
Q ss_pred CeEEEEEEcChhhHHHHHH
Q psy12151 217 ETTTFYFDVPEPHLKKSMD 235 (528)
Q Consensus 217 d~t~~~~~~~~~~l~~~L~ 235 (528)
+.-.|.+.-+..-|+-++.
T Consensus 1845 ~e~aFmiad~ahpleva~a 1863 (3015)
T KOG0943|consen 1845 EEEAFMIADPAHPLEVALA 1863 (3015)
T ss_pred cccceeecCCcchhhHhhc
Confidence 3445555555555555544
No 48
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=31.42 E-value=33 Score=34.65 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=42.0
Q ss_pred cceEEEEEEecccCC---cCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCcc
Q psy12151 156 EKLAALSLTIGVGSF---CDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSS 210 (528)
Q Consensus 156 ~~~v~i~l~v~~Gs~---~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~ 210 (528)
++.+.|--.+.|||. .++ ...| +-+..-+|-||++|++...+.+.+..-|..+
T Consensus 54 GD~IEII~~VgGGs~~~~~~~~~i~~--~~~~sRl~~Gtg~y~s~~~~~~a~~asg~e~ 110 (326)
T PRK11840 54 GDELEIVHFVGGGSDLVADDSWTVAG--KTFSSRLLVGTGKYKDFEETAAAVEASGAEI 110 (326)
T ss_pred CCEEEEEEEecCCCCCCCCCCeEECC--EEEecceeEecCCCCCHHHHHHHHHHhCCCE
Confidence 358999999999999 666 6666 3345556789999999888888888888766
No 49
>KOG4264|consensus
Probab=30.24 E-value=34 Score=36.31 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=15.7
Q ss_pred hhhhhccCccceEEEEEEecccCCcCC
Q psy12151 147 RSKQEKKSDEKLAALSLTIGVGSFCDG 173 (528)
Q Consensus 147 ~~~~~~~~~~~~v~i~l~v~~Gs~~e~ 173 (528)
++.+.++..++...=..+-+-|.+++-
T Consensus 121 dStkeeKgde~~~np~yIpk~g~fy~h 147 (694)
T KOG4264|consen 121 DSTKEEKGDENVENPAYIPKTGRFYMH 147 (694)
T ss_pred chhhhhhcccCccCccccccccccccc
Confidence 455555556655555566666666543
No 50
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=27.63 E-value=1.4e+02 Score=18.70 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=16.4
Q ss_pred HHHHH-HcCCCCHHHHHHHHHHHH
Q psy12151 472 YLRLL-SQSPISSEMYAEISNIHH 494 (528)
Q Consensus 472 ~l~~L-~~~git~~el~~ak~~~~ 494 (528)
.++.+ .++-+|++|+++.|+.+.
T Consensus 7 ~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 7 KLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHh
Confidence 44444 445589999999998764
No 51
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=27.44 E-value=28 Score=40.35 Aligned_cols=21 Identities=10% Similarity=-0.216 Sum_probs=10.1
Q ss_pred HHHHHHHHHHcCCCCCCCCCC
Q psy12151 271 CRLEQLLATACTKENPAGKFV 291 (528)
Q Consensus 271 ~~~~~~~~~~~~~~~p~~~~~ 291 (528)
.+++-.+-..+|+.+=+.+++
T Consensus 542 ~Lvllklv~~lFPTSD~~HpV 562 (840)
T PF04147_consen 542 DLVLLKLVGTLFPTSDFRHPV 562 (840)
T ss_pred HHHHHHHHHHhcCcccccCcc
Confidence 344444445666654444443
No 52
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=26.59 E-value=32 Score=37.39 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=8.2
Q ss_pred ecCCCEEEEEecC
Q psy12151 83 LKNGLTALLVSDV 95 (528)
Q Consensus 83 L~NGl~v~l~~~~ 95 (528)
+.-|.--+.+.+.
T Consensus 916 edGgW~fL~~gsd 928 (1001)
T COG5406 916 EDGGWSFLMVGSD 928 (1001)
T ss_pred hcCcceeeecCCc
Confidence 5667776666544
No 53
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=26.00 E-value=2.1e+02 Score=20.51 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCccceEe-cCCeEEEEEEcChhhHHHHHHHHHHhhh
Q psy12151 198 DFDAFLSTRGGSSNAST-EYETTTFYFDVPEPHLKKSMDIFSNFFI 242 (528)
Q Consensus 198 ~l~~~L~~~G~~~na~t-~~d~t~~~~~~~~~~l~~~L~lla~~l~ 242 (528)
.+-+.|.+.|..+.... +.....+++.++.++.+.++..+.+.|.
T Consensus 20 ~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~~~~~~~lh~~~~ 65 (66)
T cd04922 20 TFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVHERFF 65 (66)
T ss_pred HHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHh
Confidence 45566788888885554 2245899999999999999999888765
No 54
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=25.96 E-value=2.4e+02 Score=26.08 Aligned_cols=71 Identities=10% Similarity=-0.031 Sum_probs=49.1
Q ss_pred ChHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCH--------HHH
Q psy12151 415 GSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISS--------EMY 486 (528)
Q Consensus 415 ~sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~--------~el 486 (528)
+++.+.|-++||+.-..... +.- ...+.+|+.|.+-.+++...+...-..+.+ ++++ +|+
T Consensus 77 tr~l~rLE~kGlI~R~~~~~---------DrR--~~~I~LTekG~~l~~~l~~~~~~~e~~~~~-~~s~~~~l~~~~~e~ 144 (185)
T PRK13777 77 FNFSKKLEERGYLTFSKKED---------DKR--NTYIELTEKGEELLLETMEEYDPENNSVFN-GALPLRELYGKFPEF 144 (185)
T ss_pred HHHHHHHHHCCCEEecCCCC---------CCC--eeEEEECHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHhhhhHHH
Confidence 34556777899987543322 222 235677888877777777777776666665 8999 999
Q ss_pred HHHHHHHHhcc
Q psy12151 487 AEISNIHHIGF 497 (528)
Q Consensus 487 ~~ak~~~~~~f 497 (528)
++...++..-+
T Consensus 145 ~~l~~ll~~iy 155 (185)
T PRK13777 145 IELMAIVRNIY 155 (185)
T ss_pred HHHHHHHHHHh
Confidence 99888887543
No 55
>KOG1834|consensus
Probab=25.85 E-value=50 Score=36.18 Aligned_cols=9 Identities=67% Similarity=0.722 Sum_probs=4.0
Q ss_pred cchhhhhcc
Q psy12151 111 MSMEQESEE 119 (528)
Q Consensus 111 ~~~~~~~~~ 119 (528)
+++++++||
T Consensus 891 gs~ee~~e~ 899 (952)
T KOG1834|consen 891 GSIEEESEE 899 (952)
T ss_pred Ccccccccc
Confidence 344444444
No 56
>KOG0699|consensus
Probab=25.48 E-value=55 Score=33.30 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=15.8
Q ss_pred EEEEEecccCCcCC-CCCChHHHH
Q psy12151 160 ALSLTIGVGSFCDG-HIPGLAHFL 182 (528)
Q Consensus 160 ~i~l~v~~Gs~~e~-~~~Glahll 182 (528)
.+-+.+..|-..+| .-.|....+
T Consensus 313 map~~~~~~g~EePG~DSGtTAvV 336 (542)
T KOG0699|consen 313 MAPLLLGSGGAEEPGEDSGTTAVV 336 (542)
T ss_pred ccccccccccCcCCCCCCCceEEE
Confidence 44555667788889 888876553
No 57
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=24.91 E-value=1.7e+02 Score=21.73 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=30.3
Q ss_pred HHHHHHhcCCccceEecCCeEEEEEEcChhhHHHHHHHHHH
Q psy12151 199 FDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDIFSN 239 (528)
Q Consensus 199 l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l~~~L~lla~ 239 (528)
+..-|...|.++.+.+ .+...++-++.++++.+++.|.+
T Consensus 27 i~~~La~~~I~i~~is--S~~~~~ilV~~~~~~~A~~~L~~ 65 (65)
T PF13840_consen 27 IFSALAEAGINIFMIS--SEISISILVKEEDLEKAVEALHE 65 (65)
T ss_dssp HHHHHHHTTS-ECEEE--ESSEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEE--EeeeEEEEEeHHHHHHHHHHhcC
Confidence 3455778888887777 66778888999999999998863
No 58
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=24.53 E-value=44 Score=34.67 Aligned_cols=11 Identities=18% Similarity=-0.094 Sum_probs=6.3
Q ss_pred ceEEEEEEecc
Q psy12151 157 KLAALSLTIGV 167 (528)
Q Consensus 157 ~~v~i~l~v~~ 167 (528)
+-+.+|++-++
T Consensus 331 ~~~~~c~~~kv 341 (375)
T PF03153_consen 331 DNVVLCQYDKV 341 (375)
T ss_dssp S-EEEEEEEEE
T ss_pred CCEEEEEeecc
Confidence 36667776655
No 59
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.41 E-value=2.2e+02 Score=20.02 Aligned_cols=43 Identities=14% Similarity=0.082 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCccceEecCCeEEEEEEcChhhHHHHHHHHHHhh
Q psy12151 198 DFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDIFSNFF 241 (528)
Q Consensus 198 ~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l~~~L~lla~~l 241 (528)
.+-+.|...|..+...+.. ...+++.++..+.+.+...+...|
T Consensus 19 ~i~~~L~~~~i~v~~i~~s-~~~is~~v~~~~~~~~~~~l~~~l 61 (63)
T cd04923 19 KMFKALAEAGINIEMISTS-EIKISCLVDEDDAEKAVRALHEAF 61 (63)
T ss_pred HHHHHHHHCCCCEEEEEcc-CCeEEEEEeHHHHHHHHHHHHHHh
Confidence 4556678888888777654 477889999999999999888766
No 60
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=23.95 E-value=2.3e+02 Score=19.94 Aligned_cols=43 Identities=12% Similarity=0.083 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCccceEecCCeEEEEEEcChhhHHHHHHHHHHhh
Q psy12151 198 DFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDIFSNFF 241 (528)
Q Consensus 198 ~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l~~~L~lla~~l 241 (528)
.+-+.|.+.|..+...+.. ...+++.++..+.+.++..+...|
T Consensus 19 ~i~~~L~~~~i~v~~i~~s-~~~is~~v~~~d~~~~~~~l~~~~ 61 (63)
T cd04936 19 KMFEALAEAGINIEMISTS-EIKISCLIDEDDAEKAVRALHEAF 61 (63)
T ss_pred HHHHHHHHCCCcEEEEEcc-CceEEEEEeHHHHHHHHHHHHHHh
Confidence 4556678888888777654 478899999999999999888766
No 61
>KOG1189|consensus
Probab=23.46 E-value=54 Score=36.65 Aligned_cols=8 Identities=25% Similarity=0.293 Sum_probs=3.2
Q ss_pred cCCCEEEE
Q psy12151 84 KNGLTALL 91 (528)
Q Consensus 84 ~NGl~v~l 91 (528)
+-|..-+-
T Consensus 865 ~GgW~fL~ 872 (960)
T KOG1189|consen 865 DGGWSFLN 872 (960)
T ss_pred cCCeeeec
Confidence 33444433
No 62
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.80 E-value=2.8e+02 Score=19.87 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=33.5
Q ss_pred HHHHHHhcCCccceEec-CCeEEEEEEcChhhHHHHHHHHHHhhhC
Q psy12151 199 FDAFLSTRGGSSNASTE-YETTTFYFDVPEPHLKKSMDIFSNFFIS 243 (528)
Q Consensus 199 l~~~L~~~G~~~na~t~-~d~t~~~~~~~~~~l~~~L~lla~~l~~ 243 (528)
+-..|...|..+..... .....+++.++.++...++..+...|.+
T Consensus 21 i~~~L~~~~i~v~~i~~~~s~~~isf~v~~~d~~~~~~~lh~~~~~ 66 (66)
T cd04916 21 ATAALAKAGINIRMINQGSSEISIMIGVHNEDADKAVKAIYEEFFN 66 (66)
T ss_pred HHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHhC
Confidence 44556777877755542 2447899999999999999999887653
No 63
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=22.18 E-value=29 Score=39.36 Aligned_cols=15 Identities=7% Similarity=0.096 Sum_probs=0.0
Q ss_pred eEEEEEEecccCCcC
Q psy12151 158 LAALSLTIGVGSFCD 172 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e 172 (528)
..-+...|+-|---+
T Consensus 711 ~~L~nTLVNqGi~ee 725 (787)
T PF03115_consen 711 VTLFNTLVNQGIPEE 725 (787)
T ss_dssp ---------------
T ss_pred HHHHHHHHHcCCCHH
Confidence 444555666655443
Done!