Query psy12151
Match_columns 528
No_of_seqs 304 out of 1866
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 20:03:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12151.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12151hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q2l_A Protease III; hydrolase 100.0 1E-56 3.4E-61 517.7 44.5 395 64-526 7-406 (939)
2 3cww_A Insulysin, insulin-degr 100.0 4E-54 1.4E-58 498.6 45.5 394 64-526 21-422 (990)
3 3eoq_A Putative zinc protease; 100.0 4.2E-54 1.4E-58 449.9 37.8 359 78-518 2-362 (406)
4 3ami_A Zinc peptidase; alpha/b 100.0 7.3E-53 2.5E-57 445.8 41.4 369 76-519 5-380 (445)
5 3hdi_A Processing protease; CA 100.0 7.4E-52 2.5E-56 434.7 39.6 359 78-518 2-362 (421)
6 1pp9_A Ubiquinol-cytochrome C 100.0 2.1E-49 7E-54 419.5 40.7 341 158-518 34-385 (446)
7 1hr6_B Beta-MPP, mitochondrial 100.0 7.3E-49 2.5E-53 414.5 42.0 364 76-517 5-384 (443)
8 1hr6_A Alpha-MPP, mitochondria 100.0 4.6E-48 1.6E-52 412.7 39.2 338 158-518 26-385 (475)
9 3amj_B Zinc peptidase inactive 100.0 1.2E-47 4.1E-52 402.7 38.6 360 77-518 3-371 (424)
10 3gwb_A Peptidase M16 inactive 100.0 2.2E-47 7.5E-52 401.7 39.8 364 75-518 11-378 (434)
11 1pp9_B Ubiquinol-cytochrome C 100.0 1.5E-45 5.2E-50 388.2 40.4 359 74-518 20-388 (439)
12 3d3y_A Uncharacterized protein 100.0 3.2E-45 1.1E-49 383.7 36.6 339 158-518 24-381 (425)
13 2fge_A Atprep2;, zinc metallop 100.0 9.4E-46 3.2E-50 428.6 33.5 372 70-518 30-432 (995)
14 3cx5_A Cytochrome B-C1 complex 100.0 4.6E-45 1.6E-49 383.4 33.9 333 158-517 22-369 (431)
15 3go9_A Insulinase family prote 100.0 8.2E-44 2.8E-48 381.4 32.8 356 76-517 24-400 (492)
16 3s5m_A Falcilysin; M16 metallo 100.0 1.5E-43 5.2E-48 408.6 35.3 374 71-518 80-537 (1193)
17 3cx5_B Cytochrome B-C1 complex 100.0 2.6E-37 8.8E-42 316.3 26.3 298 158-500 12-312 (352)
18 2fge_A Atprep2;, zinc metallop 99.9 1.1E-25 3.9E-30 260.5 28.9 329 157-512 573-925 (995)
19 1q2l_A Protease III; hydrolase 99.9 1.4E-25 4.7E-30 258.2 24.9 321 158-509 524-850 (939)
20 3cww_A Insulysin, insulin-degr 99.9 8E-23 2.8E-27 236.5 23.7 314 158-499 542-866 (990)
21 3s5m_A Falcilysin; M16 metallo 99.8 3.5E-21 1.2E-25 222.6 14.1 335 157-514 738-1123(1193)
22 3ih6_A Putative zinc protease; 99.5 9.9E-14 3.4E-18 129.2 12.3 131 379-518 22-152 (197)
23 3ih6_A Putative zinc protease; 98.0 0.00014 4.9E-09 66.7 15.3 162 157-332 23-194 (197)
24 3hdi_A Processing protease; CA 97.8 0.00026 9E-09 72.9 14.2 164 156-333 232-405 (421)
25 3cx5_A Cytochrome B-C1 complex 97.6 0.0011 3.6E-08 68.3 15.7 166 158-333 232-414 (431)
26 3eoq_A Putative zinc protease; 97.6 0.00038 1.3E-08 71.4 11.9 163 157-333 234-405 (406)
27 3gwb_A Peptidase M16 inactive 97.5 0.00064 2.2E-08 70.1 13.3 165 157-333 248-422 (434)
28 1hr6_B Beta-MPP, mitochondrial 97.5 0.0018 6.2E-08 67.0 16.4 167 157-332 245-428 (443)
29 1hr6_A Alpha-MPP, mitochondria 97.5 0.0013 4.5E-08 68.9 14.7 165 158-332 243-437 (475)
30 3amj_B Zinc peptidase inactive 97.4 0.0015 5.2E-08 67.0 14.5 165 157-333 241-415 (424)
31 1pp9_A Ubiquinol-cytochrome C 97.4 0.0016 5.4E-08 67.6 14.2 165 158-333 250-429 (446)
32 1pp9_B Ubiquinol-cytochrome C 97.2 0.0027 9.4E-08 65.4 13.6 166 157-333 251-431 (439)
33 3ami_A Zinc peptidase; alpha/b 96.9 0.0064 2.2E-07 62.9 12.8 163 158-333 244-423 (445)
34 3d3y_A Uncharacterized protein 96.6 0.05 1.7E-06 55.3 16.6 159 158-331 254-421 (425)
35 3go9_A Insulinase family prote 95.3 0.31 1.1E-05 51.0 15.7 172 158-344 266-461 (492)
36 3cx5_B Cytochrome B-C1 complex 73.7 28 0.00097 33.6 12.1 118 381-516 10-133 (352)
37 4aik_A Transcriptional regulat 51.7 44 0.0015 28.1 7.6 67 416-494 65-131 (151)
38 2zd7_A VPS75, vacuolar protein 43.4 5 0.00017 38.1 0.0 6 118-123 226-231 (264)
39 2ayu_A Nucleosome assembly pro 43.3 5 0.00017 40.6 0.0 21 121-141 376-396 (417)
40 2nyx_A Probable transcriptiona 43.1 49 0.0017 28.2 6.6 71 416-498 78-148 (168)
41 3eco_A MEPR; mutlidrug efflux 41.1 73 0.0025 25.8 7.2 68 416-495 66-133 (139)
42 2nnn_A Probable transcriptiona 40.7 1.1E+02 0.0037 24.6 8.2 66 417-494 72-137 (140)
43 3deu_A Transcriptional regulat 40.4 65 0.0022 27.4 6.9 68 416-495 87-154 (166)
44 3k0l_A Repressor protein; heli 40.2 70 0.0024 26.9 7.1 70 416-497 79-148 (162)
45 3s2w_A Transcriptional regulat 39.1 78 0.0027 26.4 7.2 68 416-495 83-150 (159)
46 3bpv_A Transcriptional regulat 37.6 1.3E+02 0.0044 24.1 8.2 67 417-495 63-129 (138)
47 3bro_A Transcriptional regulat 36.3 94 0.0032 25.1 7.1 68 416-495 69-136 (141)
48 3e6m_A MARR family transcripti 34.6 64 0.0022 27.1 5.9 69 416-496 86-154 (161)
49 3oop_A LIN2960 protein; protei 34.2 1E+02 0.0035 25.0 7.0 68 416-495 70-137 (143)
50 3bja_A Transcriptional regulat 34.1 1.1E+02 0.0039 24.4 7.3 67 417-495 67-133 (139)
51 1g6u_A Domain swapped dimer; d 33.6 81 0.0028 20.1 4.4 27 466-492 2-28 (48)
52 3fm5_A Transcriptional regulat 32.7 62 0.0021 26.7 5.4 69 416-496 73-141 (150)
53 3nqo_A MARR-family transcripti 32.6 1E+02 0.0035 26.8 7.1 70 416-497 76-145 (189)
54 2eth_A Transcriptional regulat 32.1 1.2E+02 0.004 25.1 7.1 68 416-495 77-144 (154)
55 1lj9_A Transcriptional regulat 31.7 1.2E+02 0.0041 24.5 7.1 68 417-496 63-130 (144)
56 3hsr_A HTH-type transcriptiona 31.5 72 0.0025 26.0 5.6 66 416-495 69-134 (140)
57 3ech_A MEXR, multidrug resista 31.3 68 0.0023 26.2 5.4 68 416-495 70-137 (142)
58 2fbi_A Probable transcriptiona 30.8 1.1E+02 0.0037 24.6 6.6 67 417-495 70-136 (142)
59 2rdp_A Putative transcriptiona 30.5 1.1E+02 0.0039 24.9 6.7 67 417-495 76-142 (150)
60 3boq_A Transcriptional regulat 29.8 89 0.0031 26.0 6.0 70 416-497 81-150 (160)
61 2gxg_A 146AA long hypothetical 28.8 1.4E+02 0.0048 24.1 7.0 67 417-495 70-136 (146)
62 3cjn_A Transcriptional regulat 28.8 1.3E+02 0.0044 25.0 6.9 69 416-496 85-153 (162)
63 1s3j_A YUSO protein; structura 27.9 1.4E+02 0.0049 24.4 7.0 68 417-496 71-138 (155)
64 3u2r_A Regulatory protein MARR 27.1 1.1E+02 0.0036 25.9 6.0 71 416-498 81-151 (168)
65 2fbh_A Transcriptional regulat 26.7 1.9E+02 0.0065 23.2 7.5 67 417-495 72-138 (146)
66 2a61_A Transcriptional regulat 25.9 1.5E+02 0.0051 23.9 6.6 67 417-495 67-133 (145)
67 1okr_A MECI, methicillin resis 25.7 2.1E+02 0.007 22.5 7.3 66 416-494 47-121 (123)
68 1jgs_A Multiple antibiotic res 25.5 99 0.0034 24.9 5.3 67 417-495 68-135 (138)
69 4fp9_B Mterf domain-containing 25.5 15 0.0005 36.2 0.0 7 14-20 214-220 (335)
70 3jw4_A Transcriptional regulat 25.2 64 0.0022 26.6 4.1 68 416-495 76-143 (148)
71 3bj6_A Transcriptional regulat 25.1 1.3E+02 0.0043 24.7 6.1 69 416-496 73-141 (152)
72 3tgn_A ADC operon repressor AD 21.7 1.6E+02 0.0054 23.8 5.9 80 402-494 54-139 (146)
73 2hr3_A Probable transcriptiona 21.4 86 0.0029 25.6 4.2 67 417-494 70-136 (147)
74 3kp7_A Transcriptional regulat 21.0 1E+02 0.0035 25.3 4.6 68 416-495 70-139 (151)
75 3g3z_A NMB1585, transcriptiona 20.2 1.1E+02 0.0037 24.9 4.6 68 416-495 64-131 (145)
76 2bv6_A MGRA, HTH-type transcri 20.1 1.7E+02 0.0057 23.6 5.7 65 417-495 71-135 (142)
77 3ov5_A VIRB7 (XAC2622), unchar 20.0 1.1E+02 0.0039 22.8 3.8 44 284-332 33-76 (85)
No 1
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=1e-56 Score=517.65 Aligned_cols=395 Identities=30% Similarity=0.470 Sum_probs=353.1
Q ss_pred cCCCCCCCCCCCCcceeEEecCCCEEEEEecCCcccccccccccccccchhhhhcccCCCCCCCCCCCCCCCCccchhhh
Q psy12151 64 RLPLPVKGLCDRYKYSVIQLKNGLTALLVSDVENLITLDENVTADDKMSMEQESEESGNESGDETASSVDSQGMEVDEFE 143 (528)
Q Consensus 64 ~~~~~~~~~~d~~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (528)
....|+|++.|.+.|+.++|+|||+|++++++..|
T Consensus 7 ~~~~~~~~~~d~~~~~~~~L~NGl~v~~~~~~~~~--------------------------------------------- 41 (939)
T 1q2l_A 7 IQETIRKSDKDNRQYQAIRLDNGMVVLLVSDPQAV--------------------------------------------- 41 (939)
T ss_dssp CCSCCCCCTTCCCEEEEEEETTSCEEEEEECTTCS---------------------------------------------
T ss_pred ccccCcCCCCCCcceEEEEecCCCEEEEEECCCCC---------------------------------------------
Confidence 33568999999999999999999999999998763
Q ss_pred hhhhhhhhccCccceEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEE
Q psy12151 144 EADRSKQEKKSDEKLAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFY 222 (528)
Q Consensus 144 ~~~~~~~~~~~~~~~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~ 222 (528)
.+++++++++|+++|| +.+|+|||+|||+|+||++|+...++.++++.+||.+||+|+.++|+|+
T Consensus 42 --------------~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~ 107 (939)
T 1q2l_A 42 --------------KSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFY 107 (939)
T ss_dssp --------------SEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEEEECSSCEEEE
T ss_pred --------------ceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcceEEECCCcEEEE
Confidence 8999999999999999 9999999999999999999997579999999999999999999999999
Q ss_pred EEcChhhHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcc--
Q psy12151 223 FDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKN-- 300 (528)
Q Consensus 223 ~~~~~~~l~~~L~lla~~l~~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~-- 300 (528)
+++++++|+.+|++|++++.+|.|++++|++||.+|.+|++.+.++|.+++.+.+..++|++|||+++++|+.++|..
T Consensus 108 ~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~ 187 (939)
T 1q2l_A 108 LEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKP 187 (939)
T ss_dssp EEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCCSCCHHHHSCBT
T ss_pred EEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCccCCCCCHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --cccchHHHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCcccCCCceEEEEeec
Q psy12151 301 --TVDENELYAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPV 378 (528)
Q Consensus 301 --it~~~~i~e~L~~f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (528)
++ +++|++||++||+|+||+|+|+|++++++++++|+++|+.||++..+.+.... +++........+...|.
T Consensus 188 ~~~~-----~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 261 (939)
T 1q2l_A 188 GNPV-----QQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITV-PVVTDAQKGIIIHYVPA 261 (939)
T ss_dssp TBCH-----HHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCCCCS-CSCCGGGSSEEEEECCS
T ss_pred CchH-----HHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCCCCCC-CCCCHHHcCEEEEEEeC
Confidence 99 99999999999999999999999999999999999999999976544332221 22322223344555566
Q ss_pred CCcceEEEEEEcCCccccccCCHHHHHHHHHhCCCCChHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccch
Q psy12151 379 DDVNVLYMTWYTPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQG 458 (528)
Q Consensus 379 ~~~~~l~l~f~~p~~~~~~~~~~l~vl~~iLg~~~~~sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g 458 (528)
.+++.+.++|+.|.....++..++.+++.+||+++.|+|++.||++||+|+++++..... ....|.|.|++.++++|
T Consensus 262 ~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lLg~~~~s~L~~~L~~~gl~~~~~a~~~~~~---~~~~g~f~i~~~~~~~~ 338 (939)
T 1q2l_A 262 LPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIV---NGNSGVLAISASLTDKG 338 (939)
T ss_dssp SCCCEEEEEEEEECCGGGGGGCHHHHHHHHHHCCCTTSHHHHHHHTTCEEEEEEEEESST---TSSEEEEEEEEEECHHH
T ss_pred CCCcEEEEEEEcCChHHhhhhCHHHHHHHHhcCCCCCcHHHHHHHcCCchheeecccccc---CCCceEEEEEEEEChhh
Confidence 778999999999987655577899999999999999999999999999999998853211 25789999999999876
Q ss_pred hccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHHcccCCcccccc
Q psy12151 459 VDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQYFPSQEYIT 526 (528)
Q Consensus 459 ~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~la~~l~~~~~e~~l~ 526 (528)
.++++++++.++++|+++++.|+++++++++|+.+...|.+...+++..++..++.++..+++++++.
T Consensus 339 ~~~~~~~~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 406 (939)
T 1q2l_A 339 LANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLD 406 (939)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHTTSCGGGTTT
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHhhcCCHHHHhc
Confidence 67999999999999999999999999999999999999988766788899999999998888777654
No 2
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=4e-54 Score=498.60 Aligned_cols=394 Identities=33% Similarity=0.594 Sum_probs=352.2
Q ss_pred cCCCCCCCCCCCCcceeEEecCCCEEEEEecCCcccccccccccccccchhhhhcccCCCCCCCCCCCCCCCCccchhhh
Q psy12151 64 RLPLPVKGLCDRYKYSVIQLKNGLTALLVSDVENLITLDENVTADDKMSMEQESEESGNESGDETASSVDSQGMEVDEFE 143 (528)
Q Consensus 64 ~~~~~~~~~~d~~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (528)
....|+|+..|.+.|+.++|+|||+|++++++..
T Consensus 21 ~~~~~~~~~~d~~~~~~~~L~NGl~v~~~~~~~~---------------------------------------------- 54 (990)
T 3cww_A 21 IGNHITKSPEDKREYRGLELANGIKVLLISDPTT---------------------------------------------- 54 (990)
T ss_dssp ECSCCCCCTTCCCEEEEEEETTCCEEEEEECTTC----------------------------------------------
T ss_pred cCCcccCCCCCCcceEEEEeCCCCEEEEEECCCC----------------------------------------------
Confidence 4467899999999999999999999999999876
Q ss_pred hhhhhhhhccCccceEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEE
Q psy12151 144 EADRSKQEKKSDEKLAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFY 222 (528)
Q Consensus 144 ~~~~~~~~~~~~~~~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~ 222 (528)
++++++++|++|++.|| +..|+|||+|||+|+||++|+..++|.++++.+||.+||+|+.++|+|+
T Consensus 55 -------------~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~ 121 (990)
T 3cww_A 55 -------------DKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYY 121 (990)
T ss_dssp -------------SEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEEEEECSSCEEEE
T ss_pred -------------CcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCceeEEECCCceEEE
Confidence 39999999999999999 9999999999999999999998679999999999999999999999999
Q ss_pred EEcChhhHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhccc-
Q psy12151 223 FDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNT- 301 (528)
Q Consensus 223 ~~~~~~~l~~~L~lla~~l~~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~i- 301 (528)
+.+++++|+.+|+++++++.+|.|++++|++|+.+|.+|++...++|.+++.+.+..++|++|||+++++|+.++|..+
T Consensus 122 ~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~~~~~G~~~~l~~~~ 201 (990)
T 3cww_A 122 FDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRP 201 (990)
T ss_dssp EEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGGCCCSCCHHHHTHHH
T ss_pred EEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCcccCCCCCHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------ccchHHHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCcccCCCceEEEE
Q psy12151 302 ------VDENELYAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTV 375 (528)
Q Consensus 302 ------t~~~~i~e~L~~f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (528)
+ +++|++||++||+|+||+|+|+||+++++++++|+++|+.||++..+.+.+. .+++.....+..+..
T Consensus 202 ~~~~~~~-----~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 275 (990)
T 3cww_A 202 NQEGIDV-----RQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFP-EHPFQEEHLKQLYKI 275 (990)
T ss_dssp HHTTCCH-----HHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCCCCC-SCSSCGGGSSEEEEE
T ss_pred ccccchH-----HHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCCCCCCC-CCCCChHHcCeEEEE
Confidence 7 9999999999999999999999999999999999999999998654433322 123332222344455
Q ss_pred eecCCcceEEEEEEcCCccccccCCHHHHHHHHHhCCCCChHHHHHHHccccceeEeeeccccccccCcceEEEEEEEec
Q psy12151 376 KPVDDVNVLYMTWYTPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLT 455 (528)
Q Consensus 376 ~~~~~~~~l~l~f~~p~~~~~~~~~~l~vl~~iLg~~~~~sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~ 455 (528)
.+..+++.+.++|++|.....++..++.+++++||+++.++|+..||++||+|+++++.... ..+.+.|.|++.++
T Consensus 276 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~lLg~~~~~sl~~~Lr~~g~~~~~~a~~~~~----~~~~~~f~i~~~~~ 351 (990)
T 3cww_A 276 VPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKAG----ARGFMFFIINVDLT 351 (990)
T ss_dssp CCSSSCCEEEEEEEECCCGGGTTTCHHHHHHHHHTCCSTTCHHHHHHHTTSCSCEEEEEEEE----ETTEEEEEEEEECC
T ss_pred EECCCCcEEEEEEEcCChhhhhhhCHHHHHHHHhcCCCCCcHHHHHHHCCCcceeeeccccC----CCCccEEEEEEEEC
Confidence 56667889999999998765567899999999999888889999999999999999886531 14579999999988
Q ss_pred cchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHHcccCCcccccc
Q psy12151 456 DQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQYFPSQEYIT 526 (528)
Q Consensus 456 ~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~la~~l~~~~~e~~l~ 526 (528)
++|.++++++++.++++|++|++.|++++++++++......|.+...+++..++..++..+..+++++++.
T Consensus 352 ~~g~~~~~~~~~~i~~~l~~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 422 (990)
T 3cww_A 352 EEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLT 422 (990)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTTTSCGGGTTT
T ss_pred hHHhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcccCCcCCHHHHHHHHHHHHhhCCHHHHhc
Confidence 87767999999999999999999999999999999988888887666778889999999988888887764
No 3
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=4.2e-54 Score=449.95 Aligned_cols=359 Identities=19% Similarity=0.237 Sum_probs=321.0
Q ss_pred ceeEEecCCCEEEEEecCCcccccccccccccccchhhhhcccCCCCCCCCCCCCCCCCccchhhhhhhhhhhhccCccc
Q psy12151 78 YSVIQLKNGLTALLVSDVENLITLDENVTADDKMSMEQESEESGNESGDETASSVDSQGMEVDEFEEADRSKQEKKSDEK 157 (528)
Q Consensus 78 ~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (528)
++.++|+|||+|++++++..|
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~----------------------------------------------------------- 22 (406)
T 3eoq_A 2 FREAELRNGLRVIAEVVPGAR----------------------------------------------------------- 22 (406)
T ss_dssp EEEEECTTSCEEEEEECTTCS-----------------------------------------------------------
T ss_pred ceeEEcCCCCEEEEEECCCCC-----------------------------------------------------------
Confidence 567899999999999998763
Q ss_pred eEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEEcChhhHHHHHHH
Q psy12151 158 LAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDI 236 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l~~~L~l 236 (528)
.+++++++++|+++|+ +..|+|||++||+|+||++++. .++.+.++.+|+.+|++|+.++|.|++++++++++.+|++
T Consensus 23 ~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~-~~~~~~l~~~G~~~na~t~~d~t~y~~~~~~~~l~~~l~l 101 (406)
T 3eoq_A 23 SVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDA-LAVNRAFDRMGAQYNAFTSEEATVYYGAVLPEFAYDLLGL 101 (406)
T ss_dssp CEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCH-HHHHHHHHHTTCEEEEEECSSCEEEEEEECGGGHHHHHHH
T ss_pred eEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCH-HHHHHHHHHhCCCccceecCCeEEEEEEecHHHHHHHHHH
Confidence 8999999999999999 9999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHHHHHHHHHHH
Q psy12151 237 FSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQK 316 (528)
Q Consensus 237 la~~l~~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~e~L~~f~~ 316 (528)
+++++ +|.|++++|+++|+++.+|++...++|..++.+.+...+|++|||+++..|+.++|..++ .++|++||+
T Consensus 102 l~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~~t-----~~~l~~f~~ 175 (406)
T 3eoq_A 102 FAKLL-RPALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRESITALT-----REGMAAYHR 175 (406)
T ss_dssp HHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHHHHHHCC-----HHHHHHHHH
T ss_pred HHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCC-----HHHHHHHHH
Confidence 99999 999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCcccCCCceEEEE-eecCCcceEEEEEEcCCccc
Q psy12151 317 THYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTV-KPVDDVNVLYMTWYTPPVQQ 395 (528)
Q Consensus 317 ~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~l~f~~p~~~~ 395 (528)
+||+|+||+|+|+||++++++.++|+++|+.||.++.+.+. +++.. . ...+.+ .+...++.+.++|+.|...
T Consensus 176 ~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~----~~~~~-~-~~~~~~~~~~~~q~~~~~~~~~~~~~- 248 (406)
T 3eoq_A 176 RRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERAY----PPLTP-A-FGVEERPYEKARALYLVALFPGVAYQ- 248 (406)
T ss_dssp HHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCCC----CCCCC-C-CEEEEEECTTCSSEEEEEEEECCCTT-
T ss_pred HhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCC----CCCCC-C-CceEEEecCCccceEEEEEecCCCCC-
Confidence 99999999999999999999999999999999965433221 12221 1 222333 3332688899999987654
Q ss_pred cccCCHHHHHHHHHhCCCCChHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHH
Q psy12151 396 LYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRL 475 (528)
Q Consensus 396 ~~~~~~l~vl~~iLg~~~~~sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~ 475 (528)
+++++++.+++.+||++..++|++.||++||+|+++++... + .+.|.|.|++.+.++ +++++++.+.++|++
T Consensus 249 ~~d~~~l~vl~~iLgg~~~srL~~~lre~gl~y~~~s~~~~--~---~~~g~~~i~~~~~~~---~~~~~~~~i~~~l~~ 320 (406)
T 3eoq_A 249 EEARFPGQVLAHLLGEEGSGRLHFALVDKGLAEVASFGLEE--A---DRAGTFHAYVQADPA---RKGEVLAVLQEELDR 320 (406)
T ss_dssp CTTHHHHHHHHHHHHCTTTSHHHHHTTTTTSEEEEEEEEEE--C---SSCEEEEEEEEECGG---GHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhCCCcchHHHHHHHHcCCeeEEEEEecc--c---CCceEEEEEEEeCcc---hHHHHHHHHHHHHHH
Confidence 45788999999999998889999999999999999998753 2 678999999999984 899999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHHccc
Q psy12151 476 LSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQY 518 (528)
Q Consensus 476 L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~la~~l~~ 518 (528)
+++.|++++||+++|+.+...+.. ..+++..++..++....+
T Consensus 321 l~~~~~t~~el~~ak~~l~~~~~~-~~e~~~~~~~~~~~~~~~ 362 (406)
T 3eoq_A 321 LGREGVGEEEVERAKTPLATGLVF-AGETPMQRLFHLGMEYLY 362 (406)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHH-HTTSHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999885 456778888888877665
No 4
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=7.3e-53 Score=445.84 Aligned_cols=369 Identities=18% Similarity=0.235 Sum_probs=323.8
Q ss_pred CcceeEEecCCCEEEEEecCCcccccccccccccccchhhhhcccCCCCCCCCCCCCCCCCccchhhhhhhhhhhhccCc
Q psy12151 76 YKYSVIQLKNGLTALLVSDVENLITLDENVTADDKMSMEQESEESGNESGDETASSVDSQGMEVDEFEEADRSKQEKKSD 155 (528)
Q Consensus 76 ~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (528)
..++.++|+||++|++++++..
T Consensus 5 ~~~~~~~L~NGl~v~~~~~~~~---------------------------------------------------------- 26 (445)
T 3ami_A 5 ASTFETTLPNGLKVVVREDHRA---------------------------------------------------------- 26 (445)
T ss_dssp GGEEEEECTTSCEEEEEECTTS----------------------------------------------------------
T ss_pred cCcEEEECCCCCEEEEEECCCC----------------------------------------------------------
Confidence 3678899999999999998766
Q ss_pred cceEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEEcChhhHHHHH
Q psy12151 156 EKLAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSM 234 (528)
Q Consensus 156 ~~~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l~~~L 234 (528)
+.+.+++++++|++.|+ +..|+|||++||+|+||++|+. .++.++++.+|+.+|++|+.++|.|++++++++++.+|
T Consensus 27 -~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~-~~l~~~l~~~g~~~na~t~~d~t~y~~~~~~~~l~~~l 104 (445)
T 3ami_A 27 -PTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGP-GEFSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVM 104 (445)
T ss_dssp -SEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCT-THHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHH
T ss_pred -CeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCH-HHHHHHHHHhCCccccccCCCeEEEEEECCHHHHHHHH
Confidence 39999999999999999 9999999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHH-hccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHHHHHHHH
Q psy12151 235 DIFSNFFISPLLKRDSIASEMDIVDSEFQ-SSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRN 313 (528)
Q Consensus 235 ~lla~~l~~P~f~~~~~~~ek~~v~~e~~-~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~e~L~~ 313 (528)
++|++++.+|.|++++|+++|+++.+|++ ...++|..++.+.+...+|++|||+++..|+.++|.+++ .++|++
T Consensus 105 ~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~l~~it-----~~~l~~ 179 (445)
T 3ami_A 105 GLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQNMT-----AQDVRD 179 (445)
T ss_dssp HHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCCHHHHHHCC-----HHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCCCHHHHhhCC-----HHHHHH
Confidence 99999999999999999999999999999 677899999999999999999999999999999999999 999999
Q ss_pred HHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCcccCCCceEEEEeecCCcceEEEEEEcCC-
Q psy12151 314 LQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPP- 392 (528)
Q Consensus 314 f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~f~~p~- 392 (528)
||++||+|+||+|+|+||+++++++++|+++|+.||.+..+.+.... .+...+ .+.+.+.....++.+.++|+.|.
T Consensus 180 f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~v~l~~~~~~~ 256 (445)
T 3ami_A 180 WYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQG-EPQQAG--VRRVTVKAPAELPYLALAWHVPAI 256 (445)
T ss_dssp HHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCCCCCCC-CCCCCS--CEEEEEEEECSSCEEEEEEEECCC
T ss_pred HHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCC-CCCCCC--ceEEEEecCCCccEEEEEEEcCCc
Confidence 99999999999999999999999999999999999876433222111 122111 22333333356888999999988
Q ss_pred --ccccccCCHHHHHHHHHhCCCCChHHHHHH-HccccceeEeeeccccccccCc-ceEEEEEEEeccchhccHHHHHHH
Q psy12151 393 --VQQLYKTKPLDVLSWFIGHEGPGSIMSYLR-KKFLAIEIEAGYHESGFEYNHL-YTLFQINVTLTDQGVDQIQHIMDI 468 (528)
Q Consensus 393 --~~~~~~~~~l~vl~~iLg~~~~~sL~~~LR-e~glaysv~a~~~~~~~~~~~~-~g~f~i~~~~~~~g~~~~~~v~~~ 468 (528)
....++++++.+++.+||++..++|++.|| ++||+|++++++.. + ..+ .|.|.|++.+.++ .+++++++.
T Consensus 257 ~~~~~~~~~~~~~vl~~iLg~~~~srL~~~lre~~gl~y~v~~~~~~--~--~~~~~g~~~i~~~~~~~--~~~~~~~~~ 330 (445)
T 3ami_A 257 VDLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDS--L--SRGQQGLFILEGVPSKG--VTIAQLETD 330 (445)
T ss_dssp SSTTCCHHHHHHHHHHHHHHSSTTCHHHHHTTTTSCCEEEEEEECCC--C--CSSCCEEEEEEEEECTT--CCHHHHHHH
T ss_pred ccccCChhHHHHHHHHHHHcCCcchHHHHHHhhcCCcEEEEEeeccc--c--ccCCCCeEEEEEEECCC--CCHHHHHHH
Confidence 432567889999999999988888999999 78999999987652 1 145 7999999999884 359999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHHcccC
Q psy12151 469 IFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQYF 519 (528)
Q Consensus 469 i~~~l~~L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~la~~l~~~ 519 (528)
+.++|++|++.|+++++|+++|+.+...+... .+++..++..++.++...
T Consensus 331 i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 380 (445)
T 3ami_A 331 LRAQVRDIAAKGVTEAELSRVKSQMVAGKVYE-QDSLMGQATQIGGLEVLG 380 (445)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999864 567788999999888763
No 5
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=7.4e-52 Score=434.68 Aligned_cols=359 Identities=18% Similarity=0.236 Sum_probs=319.3
Q ss_pred ceeEEecCCCEEEEEecCCcccccccccccccccchhhhhcccCCCCCCCCCCCCCCCCccchhhhhhhhhhhhccCccc
Q psy12151 78 YSVIQLKNGLTALLVSDVENLITLDENVTADDKMSMEQESEESGNESGDETASSVDSQGMEVDEFEEADRSKQEKKSDEK 157 (528)
Q Consensus 78 ~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (528)
|+.++|+|||+|++++++..|
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~----------------------------------------------------------- 22 (421)
T 3hdi_A 2 INTMTLDNGVRIITEKMSTVR----------------------------------------------------------- 22 (421)
T ss_dssp CEEEECTTSCEEEEEECTTCS-----------------------------------------------------------
T ss_pred ceEEEcCCCCEEEEEECCCCC-----------------------------------------------------------
Confidence 678999999999999998763
Q ss_pred eEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEEcChhhHHHHHHH
Q psy12151 158 LAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDI 236 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l~~~L~l 236 (528)
.+++++++++|+++|+ +..|+|||++||+|+||++++. .++.+.++.+|+.+|++|+.++|.|++++++++++.+|++
T Consensus 23 ~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~-~~~~~~l~~~G~~~na~t~~d~t~~~~~~~~~~l~~~l~l 101 (421)
T 3hdi_A 23 SVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSA-QEIAEFFDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAIDT 101 (421)
T ss_dssp EEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBH-HHHHHHHHTTTSCEEEEECSSCEEEEEEEEGGGHHHHHHH
T ss_pred EEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCH-HHHHHHHHHhCCceeeeeccceEEEEEEecHHHHHHHHHH
Confidence 8999999999999999 9999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHHHHHHHHHHH
Q psy12151 237 FSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQK 316 (528)
Q Consensus 237 la~~l~~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~e~L~~f~~ 316 (528)
+++++.+|.|++++|+++|+++.+|++...++|..++.+.+...+|++|||+++..|+.++|.+++ .++|++||+
T Consensus 102 l~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~it-----~~~l~~f~~ 176 (421)
T 3hdi_A 102 LSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNSFN-----EGMLRHYMD 176 (421)
T ss_dssp HHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHHHHHHCC-----HHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHhCC-----HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCcccCCCceEEEEeecCCcceEEEEEEcCCcccc
Q psy12151 317 THYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQQL 396 (528)
Q Consensus 317 ~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~f~~p~~~~~ 396 (528)
+||+|+||+|+|+|+++ +++.++|+++|+.||.+..+.+. .. +++. ...+...+...++.+.++|+.+... .
T Consensus 177 ~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~~~~-~~-~~~~----~~~~~~~~~~~q~~v~~~~~~~~~~-~ 248 (421)
T 3hdi_A 177 RFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPTTYNYQG-EK-PMFL----PNRIVRKKETEQAHLCLGYPGLPIG-D 248 (421)
T ss_dssp HHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCCCCC-CC-CCCC----CCEEEEECCCSEEEEEEEEECCCTT-C
T ss_pred HhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCCCCCCCCC-CC-CCCC----CceEEecCCCCceEEEEEEecCCCC-C
Confidence 99999999999999999 99999999999999876543221 11 1111 1223334455677888888876553 4
Q ss_pred ccCCHHHHHHHHHhCCCCChHHHHHH-HccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHH
Q psy12151 397 YKTKPLDVLSWFIGHEGPGSIMSYLR-KKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRL 475 (528)
Q Consensus 397 ~~~~~l~vl~~iLg~~~~~sL~~~LR-e~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~ 475 (528)
++++++.+++.+||++..++|++.|| ++||+|+++++... + .+.|.|.+++.+.++ +++++++.+.++|+.
T Consensus 249 ~d~~~l~vl~~iLgg~~~srL~~~lRe~~glay~~~s~~~~--~---~~~g~~~i~~~~~~~---~~~~~~~~i~~~l~~ 320 (421)
T 3hdi_A 249 KDVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSS--F---RDSGMLTIYAGTGHD---QLDDLVYSIQETTSA 320 (421)
T ss_dssp TTHHHHHHHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEEEE--C---SSCEEEEEEEEEEGG---GHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCcccHHHHHHHHhcCCEEEEEEeecc--c---CCCceEEEEEEeCHH---HHHHHHHHHHHHHHH
Confidence 68889999999999988899999999 57999999987753 2 678999999999984 899999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHHccc
Q psy12151 476 LSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQY 518 (528)
Q Consensus 476 L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~la~~l~~ 518 (528)
+++.|++++||+++|+.+...+.. ..+++..++..++.+...
T Consensus 321 l~~~~~t~~el~~ak~~l~~~~~~-~~e~~~~~~~~~~~~~~~ 362 (421)
T 3hdi_A 321 LAEKGLTEKELENGKEQLKGSLML-SLESTNSRMSRNGKNELL 362 (421)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHh
Confidence 999999999999999999999875 456777888888765544
No 6
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=2.1e-49 Score=419.52 Aligned_cols=341 Identities=17% Similarity=0.189 Sum_probs=297.2
Q ss_pred eEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEEcChhhHHHHHHH
Q psy12151 158 LAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDI 236 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l~~~L~l 236 (528)
.+.+.+++++|++.|+ +..|++||++||+|+||++++. .++.+.++.+|+.+|++|+.++|.|++++++++++.+|++
T Consensus 34 ~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~-~~~~~~l~~~G~~~na~t~~d~t~~~~~~~~~~l~~~l~l 112 (446)
T 1pp9_A 34 TCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG-NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVEL 112 (446)
T ss_dssp EEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTT-THHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHHH
T ss_pred EEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCH-HHHHHHHHHcCCEEEEEEcCCeEEEEEEecHHHHHHHHHH
Confidence 9999999999999999 9999999999999999999998 7899999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHHHHHHHHHHH
Q psy12151 237 FSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQK 316 (528)
Q Consensus 237 la~~l~~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~e~L~~f~~ 316 (528)
+++++.+|.|++++|+++|+++.+|++...++|..++.+.+...+|++|||+++..|+.++|.+++ .++|++||+
T Consensus 113 l~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~~~-----~~~l~~f~~ 187 (446)
T 1pp9_A 113 LADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLS-----RADLTEYLS 187 (446)
T ss_dssp HHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCC-----HHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHhCC-----HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCC-CCcCCCcccCCCceEEEEeecCCcceEEEEEEcCCccc
Q psy12151 317 THYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKT-FSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQQ 395 (528)
Q Consensus 317 ~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~f~~p~~~~ 395 (528)
+||+|+||+|+|+||++++++.++|+++|+.||.+..+.+. .+..+++. ...+....+..+++.+.++|+.|...
T Consensus 188 ~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~- 263 (446)
T 1pp9_A 188 RHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFT---GSQICHREDGLPLAHVAIAVEGPGWA- 263 (446)
T ss_dssp HHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSSCCCCCCCCCCC---CEEEEEEETTSSSEEEEEEEEECCTT-
T ss_pred hccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCccccCCCCCCC---CceEEEecCCccceEEEEEEecCCCC-
Confidence 99999999999999999999999999999999876443211 11011111 12222233445678888999987653
Q ss_pred cccCCHHHHHHHHHhC---------CCCChHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHH
Q psy12151 396 LYKTKPLDVLSWFIGH---------EGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIM 466 (528)
Q Consensus 396 ~~~~~~l~vl~~iLg~---------~~~~sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~ 466 (528)
++++.++.+++.+||+ +..++|++.||++|++|+++++... + ...|.|.+++.+.+ +++++++
T Consensus 264 ~~d~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~~glay~~~s~~~~--~---~~~g~~~i~~~~~~---~~~~~~~ 335 (446)
T 1pp9_A 264 HPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNIC--Y---ADTGLLGAHFVCDH---MSIDDMM 335 (446)
T ss_dssp CTHHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHHHTCCSEEEEEEEE--C---SSCEEEEEEEEECT---TSHHHHH
T ss_pred CccHHHHHHHHHHhCCCcccCCCCCCCCCHHHHHHHhcCCeEEEEEeccc--C---CCCeEEEEEEEECH---HHHHHHH
Confidence 4578899999999985 3467888999999999999887652 2 46799999999887 4999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHHccc
Q psy12151 467 DIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQY 518 (528)
Q Consensus 467 ~~i~~~l~~L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~la~~l~~ 518 (528)
+.+.++|+.+++ |++++||+++|+.+...+.. ..+++..++..++.+++.
T Consensus 336 ~~i~~~l~~l~~-~~t~~el~~ak~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 385 (446)
T 1pp9_A 336 FVLQGQWMRLCT-SATESEVLRGKNLLRNALVS-HLDGTTPVCEDIGRSLLT 385 (446)
T ss_dssp HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHH-HSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Confidence 999999999998 79999999999999999875 446678888888877643
No 7
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=7.3e-49 Score=414.48 Aligned_cols=364 Identities=18% Similarity=0.223 Sum_probs=316.6
Q ss_pred CcceeEEecCCCEEEEEecCCcccccccccccccccchhhhhcccCCCCCCCCCCCCCCCCccchhhhhhhhhhhhccCc
Q psy12151 76 YKYSVIQLKNGLTALLVSDVENLITLDENVTADDKMSMEQESEESGNESGDETASSVDSQGMEVDEFEEADRSKQEKKSD 155 (528)
Q Consensus 76 ~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (528)
..++.++|+||++|++++++..
T Consensus 5 ~~~~~~~L~NGl~v~~~~~~~~---------------------------------------------------------- 26 (443)
T 1hr6_B 5 PGTRTSKLPNGLTIATEYIPNT---------------------------------------------------------- 26 (443)
T ss_dssp CCCEEEECTTSCEEEEEECSSC----------------------------------------------------------
T ss_pred CCceEEECCCCCEEEEEECCCC----------------------------------------------------------
Confidence 4678899999999999987765
Q ss_pred cceEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEEcChhhHHHHH
Q psy12151 156 EKLAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSM 234 (528)
Q Consensus 156 ~~~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l~~~L 234 (528)
+.+.+.+++++|++.|+ +..|+|||++||+|+||++++. .++.+.++.+|+.+|++|+.++|.|++++++++++.+|
T Consensus 27 -~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~-~~l~~~l~~~g~~~na~t~~~~t~~~~~~~~~~l~~~l 104 (443)
T 1hr6_B 27 -SSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQ-QGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAV 104 (443)
T ss_dssp -SEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBH-HHHHHHHHHTTCEEEEEECSSEEEEEEEEEGGGHHHHH
T ss_pred -CEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCH-HHHHHHHHHcCCeEEEEECCCeEEEEEEecHHHHHHHH
Confidence 39999999999999999 9999999999999999999987 88999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHHHHHHHHH
Q psy12151 235 DIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNL 314 (528)
Q Consensus 235 ~lla~~l~~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~e~L~~f 314 (528)
+++++++.+|.|++++|+++|+++.+|++...++|..++.+.+...+|++|||+++..|+.++|.+++ .++|++|
T Consensus 105 ~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~-----~~~l~~f 179 (443)
T 1hr6_B 105 DILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSIT-----RTDLKDY 179 (443)
T ss_dssp HHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCC-----HHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCC-----HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCC---cCCCcccCCCceEEEEeecCCcceEEEEEEcC
Q psy12151 315 QKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFS---VETPFELDRWNRFYTVKPVDDVNVLYMTWYTP 391 (528)
Q Consensus 315 ~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~l~f~~p 391 (528)
|++||+|+||+|+|+||+++++++++|+++|+.||....+.+... ..+++. ........+...++.+.++|+.|
T Consensus 180 ~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~ 256 (443)
T 1hr6_B 180 ITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFC---RGERFIKENTLPTTHIAIALEGV 256 (443)
T ss_dssp HHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCCTTSCCSSCCCCC---CEEEEEECTTCSEEEEEEEEECC
T ss_pred HHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCC---CCeEEeccCCccceEEEEEEecC
Confidence 999999999999999999999999999999999986543322110 111121 11222223345677888889887
Q ss_pred CccccccCCHHHHHHHHHhC---------CCCChHHHHHH-HccccceeEeeeccccccccCcceEEEEEEEec--cchh
Q psy12151 392 PVQQLYKTKPLDVLSWFIGH---------EGPGSIMSYLR-KKFLAIEIEAGYHESGFEYNHLYTLFQINVTLT--DQGV 459 (528)
Q Consensus 392 ~~~~~~~~~~l~vl~~iLg~---------~~~~sL~~~LR-e~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~--~~g~ 459 (528)
.. .++++.++.+++.+||+ +..++|++.|| ++||+|+++++... + ...|.|.+++.+. +
T Consensus 257 ~~-~~~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~--~---~~~g~~~i~~~~~~~~--- 327 (443)
T 1hr6_B 257 SW-SAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTS--Y---ADSGLWGMYIVTDSNE--- 327 (443)
T ss_dssp CT-TCTTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEE--C---SSCEEEEEEEEEETTT---
T ss_pred CC-CCccHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEEEEeeecC--C---CCceEEEEEEEecCCh---
Confidence 54 34678899999999986 34678899999 78999999887653 2 5679999999988 6
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHHcc
Q psy12151 460 DQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQ 517 (528)
Q Consensus 460 ~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~la~~l~ 517 (528)
++++++++.+.++|+++++.++++++|+++|+.+...+.. ..+++..++..++..++
T Consensus 328 ~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~-~~~~~~~~~~~~~~~~~ 384 (443)
T 1hr6_B 328 HNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLL-SLDGSTAIVEDIGRQVV 384 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHT-TCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHH
Confidence 4999999999999999999889999999999999999885 44667888888887653
No 8
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=4.6e-48 Score=412.68 Aligned_cols=338 Identities=13% Similarity=0.161 Sum_probs=294.8
Q ss_pred eEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEEcChhhHHHHHHH
Q psy12151 158 LAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDI 236 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l~~~L~l 236 (528)
.+.+++++++|+++|+ +..|+|||++||+|+||++++. .++.++++.+|+.+|++|+.++|.|++++++++++.+|++
T Consensus 26 ~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~-~~~~~~le~~G~~~na~t~~d~t~y~~~~~~~~l~~~l~l 104 (475)
T 1hr6_A 26 FSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEG-RAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQL 104 (475)
T ss_dssp SEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCH-HHHHHHHHHTTSCEEEEECSSCEEEEEEECGGGHHHHHHH
T ss_pred EEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCH-HHHHHHHHHcCCEEEEEEccCeEEEEEEecHHHHHHHHHH
Confidence 8999999999999999 9999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHHHHHHHHHHH
Q psy12151 237 FSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQK 316 (528)
Q Consensus 237 la~~l~~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~e~L~~f~~ 316 (528)
|++++.+|.|++++|+++|+++.+|++...++|..++.+.+...+|++|||+++.+|+.++|.+++ +++|++||+
T Consensus 105 l~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it-----~~~l~~f~~ 179 (475)
T 1hr6_A 105 MSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSIS-----KYYLLDYRN 179 (475)
T ss_dssp HHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCGGGGGGCC-----HHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhcC-----HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCcccCCCceEEEEe------ecCCcceEEEEEEc
Q psy12151 317 THYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVK------PVDDVNVLYMTWYT 390 (528)
Q Consensus 317 ~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~l~f~~ 390 (528)
+||+|+||+|+|+| +++++++++|+++|+.||....+.+. . ..++.+ ....+. +...++.+.++|+.
T Consensus 180 ~~y~p~n~~l~v~G-~d~~~~~~~i~~~f~~~~~~~~~~~~-~-~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~ 252 (475)
T 1hr6_A 180 KFYTPENTVAAFVG-VPHEKALELTGKYLGDWQSTHPPITK-K-VAQYTG----GESCIPPAPVFGNLPELFHIQIGFEG 252 (475)
T ss_dssp HHCCGGGEEEEEES-SCHHHHHHHHHHHHTTCCCCCCCCCC-C-CCCCCC----EEEEECCCCCCSSSCCCEEEEEEEEC
T ss_pred HhCCcccEEEEEeC-CCHHHHHHHHHHHhccCCCCCCCCCC-C-CCCCcC----CeEEEecccccCCCccceEEEEEEec
Confidence 99999999999999 99999999999999999865433111 1 112221 112222 34456778888986
Q ss_pred CCccccccCCHHHHHHHHHhCC-----------CCChHHHHHH-HccccceeEeeeccccccccCcceEEEEEEEeccch
Q psy12151 391 PPVQQLYKTKPLDVLSWFIGHE-----------GPGSIMSYLR-KKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQG 458 (528)
Q Consensus 391 p~~~~~~~~~~l~vl~~iLg~~-----------~~~sL~~~LR-e~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g 458 (528)
++. ..++..++.+++.+||++ ..++|+..|| ++||+|+++++... + .+.|.|.|++.+.|
T Consensus 253 ~~~-~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~--~---~~~g~~~i~~~~~~-- 324 (475)
T 1hr6_A 253 LPI-DHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHS--Y---SDSGIFGISLSCIP-- 324 (475)
T ss_dssp CCT-TCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEE--C---SSCEEEEEEEEECG--
T ss_pred CCC-CCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccc--c---CCCceEEEEEEeCH--
Confidence 554 345788999999999864 2378999999 57999999988752 2 46799999999988
Q ss_pred hccHHHHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHHccc
Q psy12151 459 VDQIQHIMDIIFQYLRLLSQ---SPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQY 518 (528)
Q Consensus 459 ~~~~~~v~~~i~~~l~~L~~---~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~la~~l~~ 518 (528)
+++.++++.+.++|+++++ .+++++||+++|+.+...+.. ..+++..++..++.+++.
T Consensus 325 -~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 385 (475)
T 1hr6_A 325 -QAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLM-NLESKLVELEDMGRQVLM 385 (475)
T ss_dssp -GGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHH-HTTSHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHh
Confidence 4899999999999999988 789999999999999999875 456677788888886543
No 9
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=1.2e-47 Score=402.71 Aligned_cols=360 Identities=14% Similarity=0.157 Sum_probs=313.9
Q ss_pred cceeEEecCCCEEEEEecCCcccccccccccccccchhhhhcccCCCCCCCCCCCCCCCCccchhhhhhhhhhhhccCcc
Q psy12151 77 KYSVIQLKNGLTALLVSDVENLITLDENVTADDKMSMEQESEESGNESGDETASSVDSQGMEVDEFEEADRSKQEKKSDE 156 (528)
Q Consensus 77 ~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (528)
.++.++|+||++|++++++..|
T Consensus 3 ~~~~~~L~NGl~v~~~~~~~~~---------------------------------------------------------- 24 (424)
T 3amj_B 3 KIEHWTAPSGAQVYYVENRTLP---------------------------------------------------------- 24 (424)
T ss_dssp CCEEEECTTSCEEEEEECCSSS----------------------------------------------------------
T ss_pred ccEEEECCCCcEEEEEECCCCC----------------------------------------------------------
Confidence 5678999999999999998763
Q ss_pred ceEEEEEEecccCCcCC-CCCChHHHHHHHhccCCC----CCCChhHHHHHHHhcCCccceEecCCeEEEEEEcChhhH-
Q psy12151 157 KLAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSE----KYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHL- 230 (528)
Q Consensus 157 ~~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~----~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l- 230 (528)
.+.+++++++|+..++ +..|++||++||+|+||+ +++. .++.+.++.+|+.+|++|+.+.|.|+++++++++
T Consensus 25 -~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~-~~~~~~l~~~G~~~~a~t~~~~t~~~~~~~~~~~~ 102 (424)
T 3amj_B 25 -MLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDE-NAIADRLADIGARLGGGAEADRASFSLRVLSSPAE 102 (424)
T ss_dssp -EEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEH-HHHHHHHHHTTCEEEEEECSSCEEEEEEEESSHHH
T ss_pred -EEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCH-HHHHHHHHHhCCEEEeecCCCeEEEEEEEeccccC
Confidence 9999999999999999 999999999999999999 9997 8899999999999999999999999999999998
Q ss_pred -HHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHHHH
Q psy12151 231 -KKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYA 309 (528)
Q Consensus 231 -~~~L~lla~~l~~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~e 309 (528)
+.+|+++++++.+|.|++++|+++|+++.+|++...++|..++.+.+...+|++|||+++. +.++|.+++ .+
T Consensus 103 l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~--~~~~l~~it-----~~ 175 (424)
T 3amj_B 103 RNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYGHVS--SVATLQKIS-----RD 175 (424)
T ss_dssp HHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGGCCC--CHHHHHHCC-----HH
T ss_pred hhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCCCCC--CHHHHHhCC-----HH
Confidence 9999999999999999999999999999999999999999999999999999999999887 899999999 99
Q ss_pred HHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCcccCCCceEEEEeecCCcceEEEEEE
Q psy12151 310 ALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWY 389 (528)
Q Consensus 310 ~L~~f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~f~ 389 (528)
+|++||++||+|+||+|+|+||+++++++++++++|+.||.+..+.+. +. +++. .+..+.+.....++.+.++|+
T Consensus 176 ~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~~~~-~~-~~~~---~~~~~~~~~~~~~~~v~~~~~ 250 (424)
T 3amj_B 176 QLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPPL-PD-PAMP---RATVERIANPATQAHIAIGMP 250 (424)
T ss_dssp HHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCCCCC-CC-CCCC---CCEEEEEECSSSEEEEEEEEE
T ss_pred HHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCCCCC-CC-CCCC---CCceEEeeCCCCccEEEeecc
Confidence 999999999999999999999999999999999999999865443321 11 1121 122333332236777888888
Q ss_pred cCCccccccCCHHHHHHHHHhCC-CCChHHHHHH-HccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHH
Q psy12151 390 TPPVQQLYKTKPLDVLSWFIGHE-GPGSIMSYLR-KKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMD 467 (528)
Q Consensus 390 ~p~~~~~~~~~~l~vl~~iLg~~-~~~sL~~~LR-e~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~ 467 (528)
.|.. ..++..++.+++.+||++ ..++|++.|| ++||+|+++++.... .+.|.|.|++.++++ +++++++
T Consensus 251 ~~~~-~~~~~~~~~vl~~iLg~~~~~srL~~~lR~~~gl~y~v~~~~~~~-----~~~g~~~i~~~~~~~---~~~~~~~ 321 (424)
T 3amj_B 251 TLKR-GDPDFFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGAYSYFSPQ-----KSMGLFQIGFETRAE---KADEAVQ 321 (424)
T ss_dssp EEBT-TCTTHHHHHHHHHHHTTSGGGSHHHHHHTTTTCCEEEEEEEECCB-----SSCEEEEEEEEEEST---THHHHHH
T ss_pred CCCC-CCcchHHHHHHHHHhCCCCccchhHHHHHHhCCeEEEeeeeeccC-----CCceeEEEEEEeCcc---cHHHHHH
Confidence 7653 345788999999999987 6677999999 589999999887532 567899999999884 8999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHHccc
Q psy12151 468 IIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQY 518 (528)
Q Consensus 468 ~i~~~l~~L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~la~~l~~ 518 (528)
.+.++|+++++.|+++++|+++|+.+...+... .+++..++..++.....
T Consensus 322 ~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 371 (424)
T 3amj_B 322 VANDTLDAFLREGPTDAELQAAKDNLINGFALR-LDSNAKILGQVAVIGYY 371 (424)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGG-GSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHh-cCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999998853 46778888888765544
No 10
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=2.2e-47 Score=401.70 Aligned_cols=364 Identities=16% Similarity=0.142 Sum_probs=315.8
Q ss_pred CCcceeEEecCCCEEEEEecCCcccccccccccccccchhhhhcccCCCCCCCCCCCCCCCCccchhhhhhhhhhhhccC
Q psy12151 75 RYKYSVIQLKNGLTALLVSDVENLITLDENVTADDKMSMEQESEESGNESGDETASSVDSQGMEVDEFEEADRSKQEKKS 154 (528)
Q Consensus 75 ~~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (528)
...++.++|+||++|++++++..|
T Consensus 11 ~~~~~~~~L~NGl~v~~~~~~~~~-------------------------------------------------------- 34 (434)
T 3gwb_A 11 NLNVQTWSTAEGAKVLFVEARELP-------------------------------------------------------- 34 (434)
T ss_dssp -CCCEEEECTTCCEEEEEECCSSS--------------------------------------------------------
T ss_pred CCCCEEEEcCCCeEEEEEECCCCC--------------------------------------------------------
Confidence 357899999999999999998763
Q ss_pred ccceEEEEEEecccCCcCCCCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEEcChhh--HHH
Q psy12151 155 DEKLAALSLTIGVGSFCDGHIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPH--LKK 232 (528)
Q Consensus 155 ~~~~v~i~l~v~~Gs~~e~~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~--l~~ 232 (528)
.+.+.+++++|+..+++..|++||++||+|+|+++++. .++.+.++.+|+.+|++|+.+++.|++++++++ ++.
T Consensus 35 ---~~~~~~~~~~Gs~~e~~~~g~a~lle~ll~~gt~~~~~-~~l~~~l~~~g~~~~a~t~~~~~~~~~~~~~~~~~l~~ 110 (434)
T 3gwb_A 35 ---MFDLRLIFAAGSSQDGNAPGVALLTNAMLNEGVAGKDV-GAIAQGFEGLGADFGNGAYKDMAVASLRSLSAVDKREP 110 (434)
T ss_dssp ---EEEEEEEESCSGGGCTTSTTHHHHHHHHGGGEETTEEH-HHHHHHHHTTTCEEEEEECSSCEEEEEEEECSHHHHHH
T ss_pred ---EEEEEEEEecccccCCcchhHHHHHHHHHhcCcccCCH-HHHHHHHHHhCCEEEeeecCCeEEEEEEecCccccHHH
Confidence 99999999999998876789999999999999999987 899999999999999999999999999999988 999
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHHHHHHH
Q psy12151 233 SMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALR 312 (528)
Q Consensus 233 ~L~lla~~l~~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~e~L~ 312 (528)
+|+++++++.+|.|+++.|+++|+.+.++++...++|..++.+.+...+|++|||+++..|+.++|.+++ .++|+
T Consensus 111 ~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it-----~~~l~ 185 (434)
T 3gwb_A 111 ALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASDGDAKSIPPIT-----LAQLK 185 (434)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTTCCTTTTTTCC-----HHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhCC-----HHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCcccCCCceEEEEeecCCcceEEEEEEcCC
Q psy12151 313 NLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPP 392 (528)
Q Consensus 313 ~f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~f~~p~ 392 (528)
+||+++|+|+||+|+|+||++++++.++++++|+.||.++.+.... .+. ....+......| ..++.+.++|+.+.
T Consensus 186 ~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~-~~~~~~~~~~~~-~~~~~v~~~~~~~~ 260 (434)
T 3gwb_A 186 AFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALAKIE---QPA-EPKASIGHIEFP-SSQTSLMLAQLGID 260 (434)
T ss_dssp HHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCCCCCC---CCC-CCCCEEEEEECC-SSEEEEEEEEECCB
T ss_pred HHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCCCCCCC---CCC-CCCCceEEEeCC-CCceeEEecCcCCC
Confidence 9999999999999999999999999999999999998764332211 111 111122222233 35778888888775
Q ss_pred ccccccCCHHHHHHHHHhCC-CCChHHHHHH-HccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHH
Q psy12151 393 VQQLYKTKPLDVLSWFIGHE-GPGSIMSYLR-KKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIF 470 (528)
Q Consensus 393 ~~~~~~~~~l~vl~~iLg~~-~~~sL~~~LR-e~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~ 470 (528)
.. .+++.++.+++.+||++ ..++|++.|| ++|++|++++++.. + .+.|.|.|++.++++ +++++++.+.
T Consensus 261 ~~-~~d~~~l~vl~~iLg~~~~~s~L~~~lRe~~gl~Y~v~~~~~~--~---~~~g~~~i~~~~~~~---~~~~~~~~i~ 331 (434)
T 3gwb_A 261 RD-DPDYAAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFTP--M---QARGPFMINLQTRAE---MSEGTLKLVQ 331 (434)
T ss_dssp TT-CTTHHHHHHHHHHHHSSSSCSHHHHHHTTTTCCCSCEEEEECC--B---SSCCEEEEEEEEEGG---GHHHHHHHHH
T ss_pred CC-CcchHHHHHHHHHhCCCcccchhHHHHHhhcCCcceeeeeccc--C---CCceeEEEEEecchh---hHHHHHHHHH
Confidence 43 45778999999999987 6778999999 57999999998753 2 577999999999984 8999999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHHccc
Q psy12151 471 QYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQY 518 (528)
Q Consensus 471 ~~l~~L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~la~~l~~ 518 (528)
++|+.+++.++++++|+++|+.+...+.. ..+++..++..++.....
T Consensus 332 ~~l~~l~~~~~~~~el~~ak~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 378 (434)
T 3gwb_A 332 DVFAEYLKNGPTQKELDDAKRELAGSFPL-STASNADIVGQLGAMGFY 378 (434)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhhhh-hccCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999885 456788899888876554
No 11
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=1.5e-45 Score=388.20 Aligned_cols=359 Identities=13% Similarity=0.160 Sum_probs=312.9
Q ss_pred CCCcceeEEecCCCEEEEEecCCcccccccccccccccchhhhhcccCCCCCCCCCCCCCCCCccchhhhhhhhhhhhcc
Q psy12151 74 DRYKYSVIQLKNGLTALLVSDVENLITLDENVTADDKMSMEQESEESGNESGDETASSVDSQGMEVDEFEEADRSKQEKK 153 (528)
Q Consensus 74 d~~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (528)
+...++.++|+||++|+++++ ..
T Consensus 20 ~~~~~~~~~L~nGl~v~~~~~-~~-------------------------------------------------------- 42 (439)
T 1pp9_B 20 HPQDLEFTRLPNGLVIASLEN-YA-------------------------------------------------------- 42 (439)
T ss_dssp -CCCCEEEECTTSCEEEEECC-CC--------------------------------------------------------
T ss_pred cCCCceEEECCCCcEEEEEeC-CC--------------------------------------------------------
Confidence 456889999999999999998 55
Q ss_pred CccceEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEEcChhhHHH
Q psy12151 154 SDEKLAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKK 232 (528)
Q Consensus 154 ~~~~~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l~~ 232 (528)
+.+.+++++++|+..++ +..|++|+++||+|+||++++. .++.+.++.+|+.+|++|+.++|.|++++++++++.
T Consensus 43 ---~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~-~~~~~~l~~~G~~~na~t~~~~t~~~~~~~~~~l~~ 118 (439)
T 1pp9_B 43 ---PASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASS-FKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDI 118 (439)
T ss_dssp ---SEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCH-HHHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHH
T ss_pred ---ceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCH-HHHHHHHHHhCCeEEEEecceEEEEEEEeehhhHHH
Confidence 39999999999999999 9999999999999999999997 899999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHHHHHHH
Q psy12151 233 SMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALR 312 (528)
Q Consensus 233 ~L~lla~~l~~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~e~L~ 312 (528)
+|+++++++.+|.|++++|+++|+.+.+|++...++|..++.+.+...+|+ |||+++..|+.++|.+++ .++|+
T Consensus 119 ~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~g~~~~l~~it-----~~~l~ 192 (439)
T 1pp9_B 119 LMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYR-NALANSLYCPDYRIGKVT-----PVELH 192 (439)
T ss_dssp HHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBS-SGGGSCSSCCGGGTTTCC-----HHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhc-CCCCCCccCCHHHHhhcC-----HHHHH
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999 99999
Q ss_pred HHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCcccCCCceEEEEeecCCcceEEEEEEcCC
Q psy12151 313 NLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPP 392 (528)
Q Consensus 313 ~f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~f~~p~ 392 (528)
+||++||+|+||+|+|+|+ +++++.++++++|+ ||.+..+.+ . ..++.. .. +.+.....++.+.++|+.|.
T Consensus 193 ~f~~~~y~~~~~~l~v~G~-~~~~~~~~~~~~~~-~~~~~~~~~--~-~~~~~~---~~-~~~~~~~~~~~v~~~~~~~~ 263 (439)
T 1pp9_B 193 DYVQNHFTSARMALIGLGV-SHPVLKQVAEQFLN-IRGGLGLSG--A-KAKYHG---GE-IREQNGDSLVHAALVAESAA 263 (439)
T ss_dssp HHHHHHCSGGGEEEEEESS-CHHHHHHHHHHHCC-CCCCC-CCC--C-CCCBCC---EE-EEEECCCSEEEEEEEEECCC
T ss_pred HHHHHhCCCCceEEEEeCC-CHHHHHHHHHHHhC-CCCCCCCCC--C-CCCCcC---Ce-EEecCCccceEEEEEecCCC
Confidence 9999999999999999999 99999999999999 986543221 1 112221 11 22222345778888898876
Q ss_pred ccccccCCHHHHHHHHHhCCC--------CChHHHHHH-HccccceeEeeeccccccccCcceEEEEEEEeccchhccHH
Q psy12151 393 VQQLYKTKPLDVLSWFIGHEG--------PGSIMSYLR-KKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQ 463 (528)
Q Consensus 393 ~~~~~~~~~l~vl~~iLg~~~--------~~sL~~~LR-e~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~ 463 (528)
.. +++..++.+++.+||+++ .++|++.|| ++||+|+++++... + .+.|.|.+++.++| ++++
T Consensus 264 ~~-~~~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~~~~~~~--~---~~~g~~~i~~~~~~---~~~~ 334 (439)
T 1pp9_B 264 IG-SAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNAS--Y---SDSGLFGFYTISQA---ASAG 334 (439)
T ss_dssp TT-SHHHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEEEEEEE--E---TTEEEEEEEEEEEG---GGHH
T ss_pred CC-chHHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEEEEeecc--c---cccceEEEEEEeCH---HHHH
Confidence 53 457789999999999753 588999999 68999999887752 1 56799999999988 4999
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHHccc
Q psy12151 464 HIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQY 518 (528)
Q Consensus 464 ~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~la~~l~~ 518 (528)
++++.+.++|+.+++.++++++|+++|+.+...+.. ..+++..++..++..+..
T Consensus 335 ~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 388 (439)
T 1pp9_B 335 DVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLM-SVESSEGFLDEVGSQALA 388 (439)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-HTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999875 346678888888776654
No 12
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=3.2e-45 Score=383.66 Aligned_cols=339 Identities=11% Similarity=0.119 Sum_probs=291.8
Q ss_pred eEEEEEEecccCCcCCCCCChHHHHHHHhccCCCCCCChhHHHHHHHhc-CCccceEecCCeE----EEEEEcChh----
Q psy12151 158 LAALSLTIGVGSFCDGHIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTR-GGSSNASTEYETT----TFYFDVPEP---- 228 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~-G~~~na~t~~d~t----~~~~~~~~~---- 228 (528)
.+.+.+++++|+..++ .|++||++||+|+|+++++...++.+.++.+ |+.+|++|+.+.| .|+++++++
T Consensus 24 ~~~~~~~~~~g~~~e~--~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~~t~~~~~~~~~~~~~~~~~ 101 (425)
T 3d3y_A 24 TVRLLVRFNTRLNHET--ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKKGNQHWFNISMNIVNDHYLQ 101 (425)
T ss_dssp EEEEEEEEEEECCTTT--HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEETTEEEEEEEEEEECGGGCS
T ss_pred eEEEEEEEeCCCCccc--hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeecCceEEEEEEEEecChhhcc
Confidence 8999999999997764 7899999999999999996657899999998 9999999999884 899999887
Q ss_pred ---hHHHHHHHHHHhhhCCC-----CCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcC-CCCCCCCCCCCChhhhc
Q psy12151 229 ---HLKKSMDIFSNFFISPL-----LKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACT-KENPAGKFVWGNLETLK 299 (528)
Q Consensus 229 ---~l~~~L~lla~~l~~P~-----f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~-~~~p~~~~~~G~~e~L~ 299 (528)
+++.+|+++++++.+|. |++++|+++|+++.+|++...++|..++.+.+...+| ++|||+++..|+.++|.
T Consensus 102 ~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~ 181 (425)
T 3d3y_A 102 DSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQKIPSFGTVAALA 181 (425)
T ss_dssp SCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTTTCTTTTSCTTCCHHHHH
T ss_pred chhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhccCCCCccCCCCCCHHHHH
Confidence 69999999999999999 9999999999999999999889999999999999999 89999999999999999
Q ss_pred ccccchHHHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCcccCCCceEEEEeecC
Q psy12151 300 NTVDENELYAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVD 379 (528)
Q Consensus 300 ~it~~~~i~e~L~~f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (528)
+++ .++|++||+++|+|+||+|+|+||++++++.+++ ++|+ ||....+.+..+ ...+.....+.+...+..
T Consensus 182 ~~t-----~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 252 (425)
T 3d3y_A 182 EET-----AASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTPREEGKAAIF--YNQPIRNVIEERTEREVL 252 (425)
T ss_dssp HCC-----HHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCCCCCCCCCSC--CCCCCCSSCEEEEEEEEC
T ss_pred hCC-----HHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCcccccccccc--ccccCCCcceeEEecCCc
Confidence 999 9999999999999999999999999999999999 9999 986543221111 011111112333344456
Q ss_pred CcceEEEEEEcCCccccccCCHHHHHHHHHhCCCCChHHHHHH-HccccceeEeeeccccccccCcceEEEEEEEeccch
Q psy12151 380 DVNVLYMTWYTPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLR-KKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQG 458 (528)
Q Consensus 380 ~~~~l~l~f~~p~~~~~~~~~~l~vl~~iLg~~~~~sL~~~LR-e~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g 458 (528)
.++.+.++|+.|.....++..++.+++.+||++..++|++.|| ++||+|++++... ...|.|.|++.++|
T Consensus 253 ~~~~v~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~s~L~~~lRe~~glaY~v~~~~~-------~~~g~~~i~~~~~~-- 323 (425)
T 3d3y_A 253 AQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASSSID-------TFRGFMTVQTGIDG-- 323 (425)
T ss_dssp SSEEEEEEEECCCCTTSTTHHHHHHHHHHHTTSTTSHHHHHTTTTSCCCSEEEEEEE-------TTTTEEEEEEEECG--
T ss_pred cccEEEEEeecCCCCCCchHHHHHHHHHHhCCChhhHHHHHHHHhcCeEEEEecccc-------ccCceEEEEEecCH--
Confidence 7889999999875445567889999999999888889999999 5799999998764 23678999999887
Q ss_pred hccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHHccc
Q psy12151 459 VDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQY 518 (528)
Q Consensus 459 ~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~la~~l~~ 518 (528)
++++++++.+.++|+.+++.++++++|+++|+.+...+... .+++..++..+...+..
T Consensus 324 -~~~~~~~~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 381 (425)
T 3d3y_A 324 -KNRNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILA-LDNAGAWLEKEYLNELM 381 (425)
T ss_dssp -GGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred -hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhc-ccCHHHHHHHHHHHHhh
Confidence 49999999999999999999999999999999999998853 46778888888776655
No 13
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=9.4e-46 Score=428.64 Aligned_cols=372 Identities=16% Similarity=0.187 Sum_probs=308.7
Q ss_pred CCCCCCCcceeEEecCCCEEEEEecCCcccccccccccccccchhhhhcccCCCCCCCCCCCCCCCCccchhhhhhhhhh
Q psy12151 70 KGLCDRYKYSVIQLKNGLTALLVSDVENLITLDENVTADDKMSMEQESEESGNESGDETASSVDSQGMEVDEFEEADRSK 149 (528)
Q Consensus 70 ~~~~d~~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (528)
.+..+.+.|++.+|+|||+|++++++..+
T Consensus 30 ~~~~~~~~~~~~~l~nGl~v~~~~~~~~~--------------------------------------------------- 58 (995)
T 2fge_A 30 ISECKSKAILFKHKKTGCEVMSVSNEDEN--------------------------------------------------- 58 (995)
T ss_dssp ETTTTEEEEEEEETTTCCEEEEEECSCSS---------------------------------------------------
T ss_pred cccccceEEEEEECCCCCEEEEEEcCCCc---------------------------------------------------
Confidence 45567789999999999999999988651
Q ss_pred hhccCccceEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHh-cCCccceEecCCeEEEEEEcC-
Q psy12151 150 QEKKSDEKLAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLST-RGGSSNASTEYETTTFYFDVP- 226 (528)
Q Consensus 150 ~~~~~~~~~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~-~G~~~na~t~~d~t~~~~~~~- 226 (528)
. ++.+|++.+| +..|+|||+|||+|+||++|+..+.+.+++.. .|+.+||+|+.++|+|++.+.
T Consensus 59 --------~-----~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~T~~d~T~y~~~~~~ 125 (995)
T 2fge_A 59 --------K-----VFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTN 125 (995)
T ss_dssp --------E-----EEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCEECSSEEEEEEEESS
T ss_pred --------c-----EEEEEeCCCCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceeeECCCceEEEEecCC
Confidence 3 3678999999 99999999999999999999985557777765 688999999999999999875
Q ss_pred hhhHHHHHHHHHHhhhCCCC--CHHHHHHH---------------HHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCC
Q psy12151 227 EPHLKKSMDIFSNFFISPLL--KRDSIASE---------------MDIVDSEFQSSILNDTCRLEQLLATACTKENPAGK 289 (528)
Q Consensus 227 ~~~l~~~L~lla~~l~~P~f--~~~~~~~e---------------k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~ 289 (528)
.++++.+|+++++++.+|.| +++.|++| |.+|.+|++...++|.+++.+.+...+|++|||++
T Consensus 126 ~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~~~~~~~~~~~py~~ 205 (995)
T 2fge_A 126 TKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRIAQQALSPENTYGV 205 (995)
T ss_dssp HHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHHHHHHHHCTTSGGGS
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCCHHHHHHHHHHHHhCCCCCCCC
Confidence 67999999999999999999 99999999 89999999999999999999999999999999999
Q ss_pred CCCCChhhhcccccchHHHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCC--CCCCCCCCCCcCCCcccC
Q psy12151 290 FVWGNLETLKNTVDENELYAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIP--SNESPKKTFSVETPFELD 367 (528)
Q Consensus 290 ~~~G~~e~L~~it~~~~i~e~L~~f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip--~~~~~~~~~~~~~~~~~~ 367 (528)
+++|+.++|.+++ +++|++||++||+|+||+|+|+||+++++++++|+++|+.|| .+..+.+. +..+++..+
T Consensus 206 ~~~G~~~~i~~~t-----~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~~~~~~~~~~~-~~~~~~~~~ 279 (995)
T 2fge_A 206 DSGGDPKDIPNLT-----FEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNSSKI-KFQKLFSEP 279 (995)
T ss_dssp CTTCCTTTGGGCC-----HHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCSHHHHSCC-CCCCCCSSC
T ss_pred CCCCChHhhhhcC-----HHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCCccccCCCccc-CCCCCCCCC
Confidence 9999999999999 999999999999999999999999999999999999999998 43211111 111233332
Q ss_pred CCce-EEEE---eecCCcceEEEEEEcCCcc-ccccCCHHHHHHHHHhCCCCChHHHHHHHccccceeEee-eccccccc
Q psy12151 368 RWNR-FYTV---KPVDDVNVLYMTWYTPPVQ-QLYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAG-YHESGFEY 441 (528)
Q Consensus 368 ~~~~-~~~~---~~~~~~~~l~l~f~~p~~~-~~~~~~~l~vl~~iLg~~~~~sL~~~LRe~glaysv~a~-~~~~~~~~ 441 (528)
.... .+.+ .+...++.+.++|+.|... +.++..++.+++.+||++..++|++.||++||+|+++++ +..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~vl~~~Lg~~~~S~L~~~l~e~gl~~~~~~~~~~~----- 354 (995)
T 2fge_A 280 VRLVEKYPAGRDGDLKKKHMLCVNWLLSEKPLDLQTQLALGFLDHLMLGTPASPLRKILLESGLGEALVSSGLSD----- 354 (995)
T ss_dssp EEEEEEEECCSSSCGGGCEEEEEEEECCSSCCCHHHHHHHHHHHHHHHSSTTSHHHHHHHHTTSCSEECSCEEEC-----
T ss_pred ceEEEecccCCCCCccCccEEEEEEEcCCCcCCHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCcceeeccccc-----
Confidence 2111 1222 3334688999999999876 456889999999999987777899999988999999865 432
Q ss_pred cCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccccCCC-CCcH--HHHHHHHHHccc
Q psy12151 442 NHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHST-KSSV--DYVEELSLHMQY 518 (528)
Q Consensus 442 ~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~f~~~~~-~~~~--~~~~~la~~l~~ 518 (528)
....+.|.|.+...+. ++++++++.++++|+++++.|+++++++++++.+...+..... +.+. .++..++.+.++
T Consensus 355 ~~~~~~f~i~~~~~~~--~~~~~~~~~i~~~l~~l~~~g~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (995)
T 2fge_A 355 ELLQPQFGIGLKGVSE--ENVQKVEELIMDTLKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLSLMLQSISKWIY 432 (995)
T ss_dssp SSSSCEEEEEEEEECG--GGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCTTSCHHHHHHHHHHHHHTT
T ss_pred cccCeEEEEEEEeCCH--HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHhc
Confidence 1346889887543333 5999999999999999999999999999999999988774332 2344 466777776655
No 14
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=4.6e-45 Score=383.45 Aligned_cols=333 Identities=12% Similarity=0.146 Sum_probs=285.4
Q ss_pred eEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEEcChhhHHHHHHH
Q psy12151 158 LAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDI 236 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l~~~L~l 236 (528)
.+.+++++++|+..|+ +..|++||++||+|+|+.+ ..++.+|+.+|++|+.++|.|++++++++++.+|++
T Consensus 22 ~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~--------~~~~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~l 93 (431)
T 3cx5_A 22 TASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS--------AVAAKEGLALSSNISRDFQSYIVSSLPGSTDKSLDF 93 (431)
T ss_dssp SEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH--------HHHHHTTCEEEEEECSSCEEEEEEECSTTHHHHHHH
T ss_pred EEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc--------ccHHHcCCeeeeeecCCeEEEEEEechhhHHHHHHH
Confidence 8999999999999999 9999999999999998743 247889999999999999999999999999999999
Q ss_pred HHHhhhCCC---CCHHHHHHHHHHHHHHHHhccCCh-HHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHHHHHHH
Q psy12151 237 FSNFFISPL---LKRDSIASEMDIVDSEFQSSILND-TCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALR 312 (528)
Q Consensus 237 la~~l~~P~---f~~~~~~~ek~~v~~e~~~~~~~p-~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~e~L~ 312 (528)
+++++.+|. |++++|+++|+++.+|++...++| ..++.+.+...+|++|||+++..|+.++|.+++ .++|+
T Consensus 94 l~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~t-----~~~l~ 168 (431)
T 3cx5_A 94 LNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLV-----VADLE 168 (431)
T ss_dssp HHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTCCHHHHHTCC-----HHHHH
T ss_pred HHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCCCHHHHhhCC-----HHHHH
Confidence 999999999 999999999999999999888899 999999999999999999999999999999999 99999
Q ss_pred HHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCcccCCCceEEEEeecCCcceEEEEEEcCC
Q psy12151 313 NLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPP 392 (528)
Q Consensus 313 ~f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~f~~p~ 392 (528)
+||++||+|+||+|+|+||+++++++++++++|+.||.+..+.+ ....++ ....+....+..+++.+.++|+.|.
T Consensus 169 ~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~ 243 (431)
T 3cx5_A 169 SFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVL--KKKAAF---LGSEVRLRDDTLPKAWISLAVEGEP 243 (431)
T ss_dssp HHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCCCC--CCCCCC---CCEEEEEECTTSSSEEEEEEEECCC
T ss_pred HHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCCCCCCC--CCCCcc---cCceEEEcCCCCCceEEEEEeecCC
Confidence 99999999999999999999999999999998999986543221 110111 1122222233346788889999876
Q ss_pred ccccccCCHHHHHHHHHhCC---------CCChHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHH
Q psy12151 393 VQQLYKTKPLDVLSWFIGHE---------GPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQ 463 (528)
Q Consensus 393 ~~~~~~~~~l~vl~~iLg~~---------~~~sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~ 463 (528)
.. .++..++.+++.+||++ ..++|++.||++|++|+++++... + .+.|.|.|++.+++. ++++
T Consensus 244 ~~-~~~~~~~~vl~~iL~~~~~~~~~~~~~~s~L~~~lRe~gl~y~v~~~~~~--~---~~~g~~~i~~~~~~~--~~~~ 315 (431)
T 3cx5_A 244 VN-SPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLS--Y---KDSGLWGFSTATRNV--TMID 315 (431)
T ss_dssp TT-CTTHHHHHHHHHHHCEEETTCTTGGGSSCTHHHHHHTTTCCSEEEEEEEE--C---SSCEEEEEEEEESCT--TCHH
T ss_pred CC-CccHHHHHHHHHHcCCCccCCCCccccccHHHHHHHhcCceeeEeEeecc--c---CCCceEEEEEeeCch--hhHH
Confidence 53 46788999999999962 347899999988999999988752 2 567999999999882 3899
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccccC-CCCCcHHHHHHHHHHcc
Q psy12151 464 HIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYH-STKSSVDYVEELSLHMQ 517 (528)
Q Consensus 464 ~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~f~~~-~~~~~~~~~~~la~~l~ 517 (528)
++++.+.++|+.+++ ++++++|+++|+.+...+... ..+++..++..++.++.
T Consensus 316 ~~~~~~~~~l~~l~~-~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (431)
T 3cx5_A 316 DLIHFTLKQWNRLTI-SVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVL 369 (431)
T ss_dssp HHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999988751 34667888888887653
No 15
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=100.00 E-value=8.2e-44 Score=381.38 Aligned_cols=356 Identities=14% Similarity=0.158 Sum_probs=283.6
Q ss_pred CcceeEEecCCCEEEEEecCCcccccccccccccccchhhhhcccCCCCCCCCCCCCCCCCccchhhhhhhhhhhhccCc
Q psy12151 76 YKYSVIQLKNGLTALLVSDVENLITLDENVTADDKMSMEQESEESGNESGDETASSVDSQGMEVDEFEEADRSKQEKKSD 155 (528)
Q Consensus 76 ~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (528)
..++..+|+|||+|++++++..|
T Consensus 24 p~~~~~~L~NGl~v~~~~~~~~~--------------------------------------------------------- 46 (492)
T 3go9_A 24 PAWQQGKLDNGFSWQLLATPQRP--------------------------------------------------------- 46 (492)
T ss_dssp TTEEEEECTTSCEEEEEECTTST---------------------------------------------------------
T ss_pred CCeEEEECCCCCEEEEEECCCCC---------------------------------------------------------
Confidence 45899999999999999886542
Q ss_pred cceEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHH----hcCCccceEecCCeEEEEEEcCh---
Q psy12151 156 EKLAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLS----TRGGSSNASTEYETTTFYFDVPE--- 227 (528)
Q Consensus 156 ~~~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~----~~G~~~na~t~~d~t~~~~~~~~--- 227 (528)
.+.+++.+++++|+++|+ +..|+|||++||+|+||++++. .++.++++ .+|+.+|++|+.++|.|++++++
T Consensus 47 ~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~-~~~~~~~~~~~~~~G~~~na~t~~d~t~y~~~~~~~~~ 125 (492)
T 3go9_A 47 SDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTP-AQLQSLWQQGIDNERPLPPAITSYDFTLYSLSLPNNRP 125 (492)
T ss_dssp TSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCH-HHHHHHHHTCSCSSSCCCSEEECSSCEEEEEEECTTCH
T ss_pred CCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHHhcCCCcceEeCCCeEEEEEECCCCcH
Confidence 248999999999999999 9999999999999999999998 78888765 47999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHH
Q psy12151 228 PHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENEL 307 (528)
Q Consensus 228 ~~l~~~L~lla~~l~~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i 307 (528)
++++.+|++|++++.+|.|++++|+++|.++.++++...++|....+ ...+++.++++++..+ ++|.+++
T Consensus 126 ~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~i~~it----- 195 (492)
T 3go9_A 126 DLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNIQEPWW---RYRLKGSSLIGHDPGQ--PVTQPVD----- 195 (492)
T ss_dssp HHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSCTTCHHH---HHHTTTSTTTTCCTTC--CCCSSCC-----
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccchhhHHH---HHHhccCCcccCCCch--hhhhcCC-----
Confidence 78999999999999999999999999999888888877777754332 3445666677666543 5789999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCcccCCCceEEEEeecCCcceEEEE
Q psy12151 308 YAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMT 387 (528)
Q Consensus 308 ~e~L~~f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 387 (528)
+++|++||++||+|+||+|+|+||++++++.++|+++|+.||.+.......+...+... ..+..+.....++.+.++
T Consensus 196 ~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~q~~v~l~ 272 (492)
T 3go9_A 196 VEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTAPAAVATLAPLPP---EPVSLMNEQAAQDTLSLM 272 (492)
T ss_dssp HHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCSSCCCCCCCCCCCS---SCEEEEESSCSSEEEEEE
T ss_pred HHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCC---CceEEEcCCCCCcEEEEE
Confidence 99999999999999999999999999999999999999999976532211111112211 223333334567889999
Q ss_pred EEcCCccccccCC------HHHHHHHHHhCCCCChHHHHHHH---ccccceeEeeeccccccccCcceEEEEEEEeccch
Q psy12151 388 WYTPPVQQLYKTK------PLDVLSWFIGHEGPGSIMSYLRK---KFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQG 458 (528)
Q Consensus 388 f~~p~~~~~~~~~------~l~vl~~iLg~~~~~sL~~~LRe---~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g 458 (528)
|+.|.... ++.. ++.+++.+|| ++|+..||+ +|++|++++++... ...+.|.+ .+.+
T Consensus 273 ~~~~~~~~-~d~~~l~~~~~~~v~~~iLg----~~L~~~lre~~~~gl~y~~~s~~~~~-----~~~~~~~i--~~~~-- 338 (492)
T 3go9_A 273 WDTPWHPI-QDSMALSRYWRSDLAREALF----WHIKQVLEKNNQKNLKLGFDCRVQYQ-----RAQCAIHL--NTPV-- 338 (492)
T ss_dssp EEEECCCC-CSHHHHHHHHHHHHHHHHHH----HHHHHHHHHSCCTTCEEEEEEEEETT-----EEEEEEEE--EECG--
T ss_pred ecCCCCCc-ccHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhccccccccCchhhhh-----hcceEEEE--EcCc--
Confidence 99876432 2333 3489999999 588899996 69999999887531 34455544 4454
Q ss_pred hccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccccCC----CCCcHHHHHHHHHHcc
Q psy12151 459 VDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHS----TKSSVDYVEELSLHMQ 517 (528)
Q Consensus 459 ~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~f~~~~----~~~~~~~~~~la~~l~ 517 (528)
++++++++.+.++|+++++.|++++||+++|+.+...+.... ..++..++..+...+.
T Consensus 339 -~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~ 400 (492)
T 3go9_A 339 -ENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQ 400 (492)
T ss_dssp -GGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 599999999999999999999999999999999999876432 2345566666665543
No 16
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=1.5e-43 Score=408.59 Aligned_cols=374 Identities=14% Similarity=0.142 Sum_probs=299.4
Q ss_pred CCCCCCcceeEEecCCCEEEEEecCCcccccccccccccccchhhhhcccCCCCCCCCCCCCCCCCccchhhhhhhhhhh
Q psy12151 71 GLCDRYKYSVIQLKNGLTALLVSDVENLITLDENVTADDKMSMEQESEESGNESGDETASSVDSQGMEVDEFEEADRSKQ 150 (528)
Q Consensus 71 ~~~d~~~~~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (528)
+..+...|++..|+||++|++++++..+
T Consensus 80 p~~~~~~~~~~~l~nGl~vl~i~~~~~~---------------------------------------------------- 107 (1193)
T 3s5m_A 80 EEFKMTYTVYQHKKAKTQVISLGTNDPL---------------------------------------------------- 107 (1193)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEECCTT----------------------------------------------------
T ss_pred CCccccceEEEECCCCCEEEEEECCCCC----------------------------------------------------
Confidence 4446678999999999999999987541
Q ss_pred hccCccceEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHh--cCCccceEecCCeEEEEEEcCh
Q psy12151 151 EKKSDEKLAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLST--RGGSSNASTEYETTTFYFDVPE 227 (528)
Q Consensus 151 ~~~~~~~~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~--~G~~~na~t~~d~t~~~~~~~~ 227 (528)
.+. ..+.+|+..+| +..|+|||+|||+|+||++|+. .++...+.. +|+.+||+|+.++|+|++.+++
T Consensus 108 -------~~~--~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~-~e~~~~l~~~slG~~lNA~T~~D~T~Y~~~~~~ 177 (1193)
T 3s5m_A 108 -------DVE--QAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNY-KNSIGLLEKGTLHTHLNAYTFNDRTVYMAGSMN 177 (1193)
T ss_dssp -------CCC--EEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCC-TTHHHHHHHSCCEEEEEEEECSSEEEEEEEESS
T ss_pred -------eEE--EEEEEEECCCCCCCchHHHHHHHHHhCCCCCCCh-hhHHHHHHHhccCceEEeEEcCCeEEEEEEecC
Confidence 222 23456777899 9999999999999999999998 566666766 8999999999999999999876
Q ss_pred -hhHHHHHHHHHHhhhCCCCCHHH--HHHH-----------------------------HHHHHHHHHhccCChHHHHHH
Q psy12151 228 -PHLKKSMDIFSNFFISPLLKRDS--IASE-----------------------------MDIVDSEFQSSILNDTCRLEQ 275 (528)
Q Consensus 228 -~~l~~~L~lla~~l~~P~f~~~~--~~~e-----------------------------k~~v~~e~~~~~~~p~~~~~~ 275 (528)
++|+.+|+++++++.+|.|++++ |..| |.+|.+|++...++|..++.+
T Consensus 178 ~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV~~E~k~~~~~p~~~~~~ 257 (1193)
T 3s5m_A 178 NKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVYNEMKGALSSPLEDLYH 257 (1193)
T ss_dssp HHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHHHHHHHHhhCCHHHHHHH
Confidence 99999999999999999999888 8776 579999999999999999999
Q ss_pred HHHHHcCCCCCCCCCCCCChhhhcccccchHHHHHHHHHHHhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCC
Q psy12151 276 LLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPK 355 (528)
Q Consensus 276 ~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~e~L~~f~~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~ 355 (528)
.+...+|++|||+++..|++++|..++ +++|++||++||+|+||+|+|+||++++++.++|+++|+.||.++.+.
T Consensus 258 ~l~~~lf~~hpY~~~~~G~~e~I~~lt-----~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~~~f~~~~~~~~~~ 332 (1193)
T 3s5m_A 258 EEMKYMFPDNVHSNNSGGDPKEITNLT-----YEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQYLGQLDYSKYRD 332 (1193)
T ss_dssp HHHHHHCTTSGGGSCTTCCHHHHTTCC-----HHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHHHHHTTCCGGGCCC
T ss_pred HHHHHhCCCCCCCCCCCCCHHHHhhCC-----HHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHHHHhccCCCCCCCc
Confidence 999999999999999999999999999 999999999999999999999999999999999999999998654321
Q ss_pred ---CCCCcCCCcccCCCceEEEEe---ecCCcceEEEEEEcCCc----cc-----------------------------c
Q psy12151 356 ---KTFSVETPFELDRWNRFYTVK---PVDDVNVLYMTWYTPPV----QQ-----------------------------L 396 (528)
Q Consensus 356 ---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~l~f~~p~~----~~-----------------------------~ 396 (528)
...+..+++..+ +.+.... +...++.+.++|++|.. .+ .
T Consensus 333 ~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 410 (1193)
T 3s5m_A 333 DAVESVEYQTYKKGP--FYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSNGSHSSDLSLENP 410 (1193)
T ss_dssp CCCCCCCCCBCCCCC--EEEEEEEECCCSSCCEEEEEEEESSCBCC----------------------CCCCSTTCCCSH
T ss_pred ccccccCCCCCCCCC--eEEEEecCCCCCccccEEEEEEEecCcccccccccccccccccccccccccccccccccccCc
Confidence 111111122211 2222111 23467889999999853 12 3
Q ss_pred ccCCHHHHHHHHHhCCCCChHHHHHHHccccceeE-eeeccccccccCcceEEEEEEEeccch------hccH-HHHHHH
Q psy12151 397 YKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIE-AGYHESGFEYNHLYTLFQINVTLTDQG------VDQI-QHIMDI 468 (528)
Q Consensus 397 ~~~~~l~vl~~iLg~~~~~sL~~~LRe~glaysv~-a~~~~~~~~~~~~~g~f~i~~~~~~~g------~~~~-~~v~~~ 468 (528)
++.+++.+|+++|||+..++|++.||++||+|+++ +++.. ....+.|.|.+...+.+ .+++ +++.+.
T Consensus 411 ~d~~al~vL~~iLggg~sSrL~~~L~e~gLa~~v~~~~~~~-----~~~~~~f~i~~~g~~~~~~~~~~~~~~~~~~~~~ 485 (1193)
T 3s5m_A 411 TDYFVLLIINNLLIHTPESVLYKALTDCGLGNNVIDRGLND-----SLVQYIFSIGLKGIKRNNEKIKNFDKVHYEVEDV 485 (1193)
T ss_dssp HHHHHHHHHHHHHHSSTTSHHHHHHHHHCSCSEEEEEEEEC-----SSSSCEEEEEEEEECTTCTTCSCGGGHHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCCCCHHHHHHHhcCCeeeeccccccc-----ccCCcEEEEEEecCChhhccccchhhHHHHHHHH
Confidence 57889999999999988888999999999999997 44432 24567888887554431 1246 799999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhccccCCCCCcH--HHHHHHHHHccc
Q psy12151 469 IFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSV--DYVEELSLHMQY 518 (528)
Q Consensus 469 i~~~l~~L~~~git~~el~~ak~~~~~~f~~~~~~~~~--~~~~~la~~l~~ 518 (528)
|.++|++|++.|+++++++++++++...++......+. .++..++....+
T Consensus 486 I~~~L~~l~~~gi~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~ 537 (1193)
T 3s5m_A 486 IMNALKKVVKEGFNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNY 537 (1193)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHc
Confidence 99999999999999999999999999988753223333 333444444444
No 17
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=100.00 E-value=2.6e-37 Score=316.32 Aligned_cols=298 Identities=13% Similarity=0.120 Sum_probs=245.0
Q ss_pred eEEEEEEecccCCcCCCCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEEcChhhHHHHHHHH
Q psy12151 158 LAALSLTIGVGSFCDGHIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDIF 237 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l~~~L~ll 237 (528)
.+.+++++++|+++++ ..|+|||++||+|+||++++. .++.+.++.+|+.+|++|+.++|.|++++++++++.+|++|
T Consensus 12 ~v~~~~~~~~Gs~~e~-~~G~ah~leh~lf~Gt~~~~~-~~l~~~l~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ll 89 (352)
T 3cx5_B 12 ISTLAVKVHGGSRYAT-KDGVAHLLNRFNFQNTNTRSA-LKLVRESELLGGTFKSTLDREYITLKATFLKDDLPYYVNAL 89 (352)
T ss_dssp EEEEEEEESCSGGGCS-STTHHHHHHHHTTSCBSSSCH-HHHHHHHHHHTCEEEEEECSSCEEEEEEEEGGGHHHHHHHH
T ss_pred eEEEEEEEeeeccCCC-cccHHHHHHHHhccCcCCCCH-HHHHHHHHHhCCeEEEEEccceEEEEEEechhhHHHHHHHH
Confidence 9999999999999874 789999999999999999997 89999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHH-HHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHHHHHHHHHHH
Q psy12151 238 SNFFISPLLKRDSIA-SEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQK 316 (528)
Q Consensus 238 a~~l~~P~f~~~~~~-~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~e~L~~f~~ 316 (528)
++++.+|.|++++|+ ++|+++.+|++...++|..++.+.+...+|+ |||+++.. .++|.+++ .++|++||+
T Consensus 90 ~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~-~p~~~~~~--~~~l~~it-----~~~l~~f~~ 161 (352)
T 3cx5_B 90 ADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFR-KGLGNPLL--YDGVERVS-----LQDIKDFAD 161 (352)
T ss_dssp HHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTTTSCSS--CCSSSCCC-----HHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCCCccc--hhhhccCC-----HHHHHHHHH
Confidence 999999999999998 9999999999999999999999999999997 99998874 68999999 999999999
Q ss_pred hhcCCCCcEEEEEcCCCHHHHHHHH-HHHhcCCCCCCCCCCCCCcCCCcccCCCceEEEEeecCCcceEEEEEEcCCccc
Q psy12151 317 THYVANHMTLALQARLDLPTLEAWV-VEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQQ 395 (528)
Q Consensus 317 ~~y~~~~~~LvivGdi~~d~l~~lv-~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~f~~p~~~~ 395 (528)
+||+|+||+|+|+| ++++++.+++ +++|+.||.+..+.+... ..++. + .. ..+ +...++.+.++++. .
T Consensus 162 ~~y~~~n~~l~v~G-~~~~~~~~~i~~~~f~~~~~~~~~~~~~~-~~~~~-~--~~-~~~-~~~~~~~~~~~~~~----~ 230 (352)
T 3cx5_B 162 KVYTKENLEVSGEN-VVEADLKRFVDESLLSTLPAGKSLVSKSE-PKFFL-G--EE-NRV-RFIGDSVAAIGIPV----N 230 (352)
T ss_dssp HHCCGGGEEEEEES-SCHHHHHHHHHHSTTTTSCCCCCCCCCSC-CCCCC-S--CE-EEE-ECSSSEEEEEEEEE----C
T ss_pred HhCCcCcEEEEEeC-CCHHHHHHHHHHHhhccCCCCCCCCCCCC-CCCcc-C--Ce-EEE-ecCCCceEEEecCC----C
Confidence 99999999999999 9999999999 899999986543322111 11221 1 11 222 22344444444332 2
Q ss_pred cccCCHHHHHHHHHhCCCCChHHHHHH-HccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHH
Q psy12151 396 LYKTKPLDVLSWFIGHEGPGSIMSYLR-KKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLR 474 (528)
Q Consensus 396 ~~~~~~l~vl~~iLg~~~~~sL~~~LR-e~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~ 474 (528)
+++++++.+++.+||+ +|| ++|++ ++++... + .+.|.|.|++.+. +.+++.+.+.++++
T Consensus 231 ~~~~~~l~vl~~iLg~--------~lre~~gl~--~~~~~~~--~---~~~g~~~i~~~~~-----~~~~~~~~i~~~l~ 290 (352)
T 3cx5_B 231 KASLAQYEVLANYLTS--------ALSELSGLI--SSAKLDK--F---TDGGLFTLFVRDQ-----DSAVVSSNIKKIVA 290 (352)
T ss_dssp TTTHHHHHHHHHHHHS--------TTSTTGGGC--SEEEEEE--E---TTEEEEEEEEEES-----CHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHhCc--------chhcccCce--EEEeecC--c---CcceeEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 3578899999999995 677 57887 5554432 2 5678899998874 34556666665553
Q ss_pred HHHcCCCCHHHHHHHHHHHHhccccC
Q psy12151 475 LLSQSPISSEMYAEISNIHHIGFNYH 500 (528)
Q Consensus 475 ~L~~~git~~el~~ak~~~~~~f~~~ 500 (528)
.+++++||+++|+.+...+...
T Consensus 291 ----~~~t~~el~~ak~~~~~~~~~~ 312 (352)
T 3cx5_B 291 ----DLKKGKDLSPAINYTKLKNAVQ 312 (352)
T ss_dssp ----HHHSCEECGGGHHHHHHHHHHH
T ss_pred ----hcCCHHHHHHHHHHHHHHHHhh
Confidence 3589999999999999888754
No 18
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.94 E-value=1.1e-25 Score=260.45 Aligned_cols=329 Identities=10% Similarity=0.011 Sum_probs=244.8
Q ss_pred ceEEEEEEecccCCcCC-CCCChHHHHHHHhc-cCCCCCCChhHHHHHHHhcCCccce-----EecC-----CeEEEEEE
Q psy12151 157 KLAALSLTIGVGSFCDG-HIPGLAHFLEHMVF-MGSEKYPEENDFDAFLSTRGGSSNA-----STEY-----ETTTFYFD 224 (528)
Q Consensus 157 ~~v~i~l~v~~Gs~~e~-~~~Glahllehllf-~Gt~~~~~~~~l~~~L~~~G~~~na-----~t~~-----d~t~~~~~ 224 (528)
+.+.+.+.+++|+. + ...|+++++.++++ .||++++. .++.+.|+.+.|.+++ .++. +.+.|+++
T Consensus 573 ~~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~s~-~el~~~l~~~~ggl~~~~~~~~~~~~~~~~~~~~i~~~ 649 (995)
T 2fge_A 573 DIIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKDLTF-VQLNQLIGRKTGGISVYPLTSSVRGKDEPCSKIIVRGK 649 (995)
T ss_dssp SEEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSSSCH-HHHHHHHHHHSSEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred CeEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCCCCH-HHHHHHHHHhcCceEeeccccccCccccccceEEEEEE
Confidence 39999999999987 5 77789999988888 59999997 8999999955555655 6655 88999999
Q ss_pred cChhhHHHHHHHHHHhhhCCCCCHH-HHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHcCCCCCCCCCCCC--Chhhhcc
Q psy12151 225 VPEPHLKKSMDIFSNFFISPLLKRD-SIASEMDIVDSEFQSSIL-NDTCRLEQLLATACTKENPAGKFVWG--NLETLKN 300 (528)
Q Consensus 225 ~~~~~l~~~L~lla~~l~~P~f~~~-~~~~ek~~v~~e~~~~~~-~p~~~~~~~~~~~~~~~~p~~~~~~G--~~e~L~~ 300 (528)
+.+++++.+|+++++++.+|.|+++ .|+++++.+.++++.... ++...+...+...+++.++|+....| ....+..
T Consensus 650 ~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~gl~~~~~~~~ 729 (995)
T 2fge_A 650 SMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFLHT 729 (995)
T ss_dssp EEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCHHHHHHHHHHSHHHHHHHHH
T ss_pred EehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhCChhHHHHHHHccHHHHHHHHH
Confidence 9999999999999999999999999 999999999999999875 55566677777776666666443222 1111110
Q ss_pred c-----ccchHHHHHHHHHHHhhcCCCCcEEEEEcCCCH-HHHHHHHHHHhcCC-CCCCCCCCCCCcCCCcccCCCceEE
Q psy12151 301 T-----VDENELYAALRNLQKTHYVANHMTLALQARLDL-PTLEAWVVEHFSGI-PSNESPKKTFSVETPFELDRWNRFY 373 (528)
Q Consensus 301 i-----t~~~~i~e~L~~f~~~~y~~~~~~LvivGdi~~-d~l~~lv~~~f~~i-p~~~~~~~~~~~~~~~~~~~~~~~~ 373 (528)
+ .....|.++|++||+++|.+++|+++|+|+++. +++.++++++|+.| |....+... .+++...... .
T Consensus 730 l~~~~~e~~~~i~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~~~~l~p~~~~~~~~----~~~~~~~~~~-~ 804 (995)
T 2fge_A 730 LEKKVDEDWEGISSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLLPENPSGGLVT----WDGRLPLRNE-A 804 (995)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTSCSSCSSCSCC----CCCCCCCCCE-E
T ss_pred HHHhhhcCHHHHHHHHHHHHHHHcCcCCcEEEEEeCHHHHHHHHHHHHHHHHhhCccCCCCCCc----ccccCCccce-E
Confidence 0 112234899999999999999999999999994 99999999999999 754432211 1122221111 1
Q ss_pred EEeecCCcceEEEEEEcCCccccccCCHHHHHHHHHhCCCCChHHHHHHHccccceeEeeeccccccccCcceEEE-EEE
Q psy12151 374 TVKPVDDVNVLYMTWYTPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQ-INV 452 (528)
Q Consensus 374 ~~~~~~~~~~l~l~f~~p~~~~~~~~~~l~vl~~iLg~~~~~sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~-i~~ 452 (528)
...| .....+..+++.. ...++++.++.+++.+||+ +.|+..||++|++|++++++. . .|.|. ++.
T Consensus 805 ~~~~-~~v~~~~~~~~~~-~~~~~d~~al~vl~~iLg~---~~L~~~iRe~g~aYg~~s~~~-------~-~G~~~~~~s 871 (995)
T 2fge_A 805 IVIP-TQVNYVGKAGNIY-STGYELDGSAYVISKHISN---TWLWDRVRVSGGAYGGFCDFD-------S-HSGVFSYLS 871 (995)
T ss_dssp EECS-CSSBEEEEEEEGG-GGTCCCCTHHHHHHHHHHH---THHHHHTTTTTCCSEEEEEEE-------T-TTTEEEEEE
T ss_pred EEec-CceEEEEEecCCC-CCCCcccHHHHHHHHHHCC---CccHHHhhhcCCCcccceEeC-------C-CccEEEEEE
Confidence 2222 2222222233332 3345689999999999996 578899999999999999874 2 46677 776
Q ss_pred EeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHH
Q psy12151 453 TLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEEL 512 (528)
Q Consensus 453 ~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~l 512 (528)
..+| ++++.++.+.+.++.|+..++++++|+++|..+...+. . ..++...+...
T Consensus 872 ~~dp----~~~~~~~~~~~~~~~l~~~~~te~el~~ak~~li~~~~-~-~~~~~~~~~~~ 925 (995)
T 2fge_A 872 YRDP----NLLKTLDIYDGTGDFLRGLDVDQETLTKAIIGTIGDVD-S-YQLPDAKGYSS 925 (995)
T ss_dssp ESBS----CSHHHHHHHHTHHHHHHTCCCCHHHHHHHHHHHHHHHT-C-CCCHHHHHHHH
T ss_pred EcCC----CHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc-C-CCCHHHHHHHH
Confidence 6666 67888888888888888889999999999999998874 2 34455555433
No 19
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.94 E-value=1.4e-25 Score=258.24 Aligned_cols=321 Identities=8% Similarity=-0.038 Sum_probs=239.7
Q ss_pred eEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEEcChhhHHHHHHH
Q psy12151 158 LAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDI 236 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l~~~L~l 236 (528)
.+.|.+.+.+|...++ ...|+++++.+|+..|+.++ .+...+ .|..++... .+...+.+++.+++++.+|++
T Consensus 524 ~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~----~~~~~l--~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~l 596 (939)
T 1q2l_A 524 KADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQL----SNQASV--GGISFSTNA-NNGLMVNANGYTQRLPQLFQA 596 (939)
T ss_dssp EEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHH----HHHHHH--TTEEEEEEE-SSEEEEEEEEESSSHHHHHHH
T ss_pred cEEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHHHHH----hhHHHH--cCcEEEEee-CCcEEEEEEcccHhHHHHHHH
Confidence 7788888888888888 78899999999999886543 334433 466667777 888999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHHHHHHHHHH
Q psy12151 237 FSNFFISPLLKRDSIASEMDIVDSEFQSS-ILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQ 315 (528)
Q Consensus 237 la~~l~~P~f~~~~~~~ek~~v~~e~~~~-~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~e~L~~f~ 315 (528)
+.+++.+|.|+++.|+++|+.+..+++.. .++|...+...+..++|++ + .+..|+.+.|..++ .++|++||
T Consensus 597 l~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~--~-~~~~~~~~~l~~it-----~~~l~~f~ 668 (939)
T 1q2l_A 597 LLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVP--Y-FSRDERRKILPSIT-----LKEVLAYR 668 (939)
T ss_dssp HHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSS--C-CCHHHHHHHGGGCC-----HHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHhcCC--C-CCHHHHHHHHhcCC-----HHHHHHHH
Confidence 99999999999999999999999999987 4568888888888888865 2 34457899999999 99999999
Q ss_pred HhhcCCCCcEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCcCCCcccCCCceEEEEeecCCcceE-EEEEEcCCcc
Q psy12151 316 KTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVL-YMTWYTPPVQ 394 (528)
Q Consensus 316 ~~~y~~~~~~LvivGdi~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~l~f~~p~~~ 394 (528)
+++|.+.++.++|+||++.+++.++++++|+.|+.+..+.... ..++........+.......++.+ .++|..+. .
T Consensus 669 ~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 745 (939)
T 1q2l_A 669 DALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRN--KDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGY-D 745 (939)
T ss_dssp HHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCCSCCCCC--EEECCCSCEEEEEEECCSSSCEEEEEEEECSSC-C
T ss_pred HHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHccCCcccccc--ceEEeCCCceEEEecCCCCCCceeEEEEEecCC-C
Confidence 9999999999999999999999999999999887543221110 011111111112222211123344 55565542 1
Q ss_pred ccccCCHHHHHHHHHhCCCCChHHHHHH-HccccceeEeeeccccccccCcceE-EEEEE-EeccchhccHHHHHHHHHH
Q psy12151 395 QLYKTKPLDVLSWFIGHEGPGSIMSYLR-KKFLAIEIEAGYHESGFEYNHLYTL-FQINV-TLTDQGVDQIQHIMDIIFQ 471 (528)
Q Consensus 395 ~~~~~~~l~vl~~iLg~~~~~sL~~~LR-e~glaysv~a~~~~~~~~~~~~~g~-f~i~~-~~~~~g~~~~~~v~~~i~~ 471 (528)
.....++..+||+...++||..|| ++||+|+++++.... ....|. |.|+. .++| +++.++++.+.+
T Consensus 746 ----~~~~~~~~~lL~~~~~s~lf~~LRek~gl~Y~v~s~~~~~----~~~~g~~~~i~s~~~~p---~~~~~~i~~~~~ 814 (939)
T 1q2l_A 746 ----EYTSSAYSSLLGQIVQPWFYNQLRTEEQLGYAVFAFPMSV----GRQWGMGFLLQSNDKQP---SFLWERYKAFFP 814 (939)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTHHHHTSCCSSSCEEEEEEEE----TTEEEEEEEEEESSSCH---HHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeeeEeec----CCeeEEEEEEECCCCCH---HHHHHHHHHHHH
Confidence 133445555666555578999999 699999999987521 133443 55555 4556 489999999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHH
Q psy12151 472 YLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYV 509 (528)
Q Consensus 472 ~l~~L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~ 509 (528)
++..+.+ ++++++|+++|+.+...+.. ..++....+
T Consensus 815 ~~~~~~~-~~t~~el~~~k~~l~~~~~~-~~~s~~~~~ 850 (939)
T 1q2l_A 815 TAEAKLR-AMKPDEFAQIQQAVITQMLQ-APQTLGEEA 850 (939)
T ss_dssp HHHHHHH-TCCHHHHHHHHHHHHHHHTC-CCSSHHHHH
T ss_pred HHHHHHH-hCCHHHHHHHHHHHHHHhcC-CCCCHHHHH
Confidence 9999875 79999999999999998874 334443333
No 20
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.90 E-value=8e-23 Score=236.46 Aligned_cols=314 Identities=10% Similarity=0.010 Sum_probs=235.1
Q ss_pred eEEEEEEecccCCcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecCCeEEEEEEcChhhHHHHHHH
Q psy12151 158 LAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDI 236 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~d~t~~~~~~~~~~l~~~L~l 236 (528)
...+.+.+.+|...++ ...|+++++..|+..+ ++. ..+...+ .|+++++.++.+...+.+++.+++++.+|++
T Consensus 542 ~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~---~~~-~~~~~~l--~G~~~~~~~~~~~~~~~~~g~~~~l~~~l~l 615 (990)
T 3cww_A 542 KANLNFEFFSPFAYVDPLHSNMAYLYLELLKDS---LNE-YAYAAEL--AGLSYDLQNTIYGMYLSVKGYNDKQPILLKK 615 (990)
T ss_dssp EEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHH---HHH-HHHHHHH--TTEEEEEEEETTEEEEEEEEESTTHHHHHHH
T ss_pred cEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH---HHH-hhhHHHh--CCeEEEEEEcCCeEEEEEEeccHhHHHHHHH
Confidence 4455555545555567 7779999999998863 332 5666655 4778899999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHHHHHHHHHH
Q psy12151 237 FSNFFISPLLKRDSIASEMDIVDSEFQSSIL-NDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQ 315 (528)
Q Consensus 237 la~~l~~P~f~~~~~~~ek~~v~~e~~~~~~-~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~e~L~~f~ 315 (528)
+.+++.+|.|+++.|++.++.+...++.... +|...+...+...+++ ++|. ..+..+.|..++ .++|++||
T Consensus 616 l~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l~~-~~~~--~~~~~~~l~~lt-----~~~l~~~~ 687 (990)
T 3cww_A 616 IIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTE-VAWT--KDELKEALADVT-----LPRLKAFI 687 (990)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHBS-SCCC--HHHHHHHHTTCC-----HHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHhCC-CCCC--HHHHHHHHhcCC-----HHHHHHHH
Confidence 9999999999999999999999999999887 8999998888888875 5554 235788999999 99999999
Q ss_pred HhhcCCCCcEEEEEcCCCHHHHHHH---HHHHhcCCCCCC-CCCCCCCcCCCcccCCCceE-EE-EeecCCcceEEEEEE
Q psy12151 316 KTHYVANHMTLALQARLDLPTLEAW---VVEHFSGIPSNE-SPKKTFSVETPFELDRWNRF-YT-VKPVDDVNVLYMTWY 389 (528)
Q Consensus 316 ~~~y~~~~~~LvivGdi~~d~l~~l---v~~~f~~ip~~~-~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~l~f~ 389 (528)
+++|.+.++.++|+||++.+++.++ +.++|+.+|... .+.+.......+..+..... +. ..+...+..+.+++.
T Consensus 688 ~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 767 (990)
T 3cww_A 688 PQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAHTKPLLPSQLAAYREVQLPDRGWFVYQQRNEVHNNSGIEIYYQ 767 (990)
T ss_dssp HHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHCCEECCGGGCCCCCBBCCCTTEEEEEEEECSSCSSEEEEEEEE
T ss_pred HHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHhccCCCCCCchhhccccceEEcCCCCeEEEEecCCCCCCcEEEEEEe
Confidence 9999999999999999999998888 778888776431 11100000011211111121 21 223334455555565
Q ss_pred cCCccccccCCHHHHHHHHHhCCCCChHHHHHH-HccccceeEeeeccccccccCcceEEEE--EEEeccchhccHHHHH
Q psy12151 390 TPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLR-KKFLAIEIEAGYHESGFEYNHLYTLFQI--NVTLTDQGVDQIQHIM 466 (528)
Q Consensus 390 ~p~~~~~~~~~~l~vl~~iLg~~~~~sL~~~LR-e~glaysv~a~~~~~~~~~~~~~g~f~i--~~~~~~~g~~~~~~v~ 466 (528)
.+ .....+..++.+++.+|. +++|..|| ++|++|+++++.... .+...|.+ ...++| +++.+.+
T Consensus 768 ~~-~~~~~~~~~l~ll~~il~----~~lf~~LRek~~lgY~v~s~~~~~-----~g~~~~~~~vqs~~dp---~~~~~~i 834 (990)
T 3cww_A 768 TD-MQSTSENMFLELFAQIIS----EPAFNTLRTKEQLGYIVFSGPRRA-----NGIQGLRFIIQSEKPP---HYLESRV 834 (990)
T ss_dssp EE-ECCHHHHHHHHHHHHHHH----HHHHHHHTTTTCCCSEEEEEEEEE-----TTEEEEEEEEEESSCH---HHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHH----HHHHHHHHhccCCcEEEEEEEEee-----CCEEEEEEEEeCCCCH---HHHHHHH
Confidence 54 233456789999999998 69999999 689999999987531 12222223 333344 4889999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccc
Q psy12151 467 DIIFQYLRLLSQSPISSEMYAEISNIHHIGFNY 499 (528)
Q Consensus 467 ~~i~~~l~~L~~~git~~el~~ak~~~~~~f~~ 499 (528)
+.+.+.+..+.+ ++++++|+++|+.+...+..
T Consensus 835 ~~f~~~~~~l~~-~~te~el~~~k~~li~~~~~ 866 (990)
T 3cww_A 835 EAFLITMEKSIE-DMTEEAFQKHIQALAIRRLD 866 (990)
T ss_dssp HHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhcC
Confidence 999999999988 89999999999999988764
No 21
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.85 E-value=3.5e-21 Score=222.62 Aligned_cols=335 Identities=10% Similarity=0.090 Sum_probs=233.5
Q ss_pred ceEEEEEEecccCCcCC-CCCChHHHHHHHhc-cCCCCCCChhHHHHHHHhcCCccceEec----------------CCe
Q psy12151 157 KLAALSLTIGVGSFCDG-HIPGLAHFLEHMVF-MGSEKYPEENDFDAFLSTRGGSSNASTE----------------YET 218 (528)
Q Consensus 157 ~~v~i~l~v~~Gs~~e~-~~~Glahllehllf-~Gt~~~~~~~~l~~~L~~~G~~~na~t~----------------~d~ 218 (528)
+++++.+.++.|. .+ +..++..|+..++. .||++++. .++.+.++.++|.+++.++ ...
T Consensus 738 GIvY~~l~fdl~~--l~~e~l~yl~Lf~~~L~~lGT~~~sy-~el~~~i~~~tGGis~s~~~~~~~~~~~~~~~~~~~~~ 814 (1193)
T 3s5m_A 738 GIVYLQFVFSLDH--LTVDELAYLNLFKTLILENKTNKRSS-EDFVILREKNIGSMSANVALYSKDDHLNVTDKYNAQAL 814 (1193)
T ss_dssp TEEEEEEEEECTT--CCHHHHTTHHHHHHHTTTCCBSSSCH-HHHHHHHHHHCSEEEEEEEEECCCBTTBCCCTTCCEEE
T ss_pred CeEEEEEEEECCC--CCHHHHhhHHHHHHHHHhCCCCCCCH-HHHHHHHHHhCCceEEEeeeecccccccccccccccce
Confidence 4999999999986 45 66778888888886 69999998 8999999999999988764 223
Q ss_pred EEEEEEcChhhHHHHHHHHHHhhhCCCCCHHH-HHHHHHHHHHHHHhccCC-hHHHHHHHHHHHcCCCCCCCCCCCCChh
Q psy12151 219 TTFYFDVPEPHLKKSMDIFSNFFISPLLKRDS-IASEMDIVDSEFQSSILN-DTCRLEQLLATACTKENPAGKFVWGNLE 296 (528)
Q Consensus 219 t~~~~~~~~~~l~~~L~lla~~l~~P~f~~~~-~~~ek~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~p~~~~~~G~~e 296 (528)
..+++.+..++++.+|+++.+++.+|.|++.+ +...+++..+.+.....+ ....+...+...+.+.++|.....| ..
T Consensus 815 ~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~~~~~~e~~~G-l~ 893 (1193)
T 3s5m_A 815 FNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNSKHYAHNIIYG-YE 893 (1193)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCHHHHHHHHHHS-HH
T ss_pred EEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCcchhhhhhhCC-hH
Confidence 57888899999999999999999999999875 666666666666655433 3334555555555555555433333 33
Q ss_pred hhccccc--------chHHHHHHHHHHHhhcCCCCcEEEEEcCCC-HHHHHHHHHHHhcCCCC----CCC---------C
Q psy12151 297 TLKNTVD--------ENELYAALRNLQKTHYVANHMTLALQARLD-LPTLEAWVVEHFSGIPS----NES---------P 354 (528)
Q Consensus 297 ~L~~it~--------~~~i~e~L~~f~~~~y~~~~~~LvivGdi~-~d~l~~lv~~~f~~ip~----~~~---------~ 354 (528)
.+..+.+ ...|.++|+++|++.|+++||++.|+|+.+ .+++.+.+++.|+.++. ... .
T Consensus 894 ~~~fl~~l~~~~e~~~~~l~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 973 (1193)
T 3s5m_A 894 NYLKLQEQLELAENDFKTLENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFEENDKYINDMQNKVN 973 (1193)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHHHHHGGGGSCCCCSSSC
T ss_pred HHHHHHHHHHhhHhhHHHHHHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHHhhhhccccccccccccccccc
Confidence 4433331 123478999999999999999999999986 57777777777766541 100 0
Q ss_pred CCC---CC----cCCCcccCCCceEEEEeecCCcceEEEEEEcCCccccccCCHHHHHHHHHhCCCCChHHHHHHHcccc
Q psy12151 355 KKT---FS----VETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLA 427 (528)
Q Consensus 355 ~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~l~l~f~~p~~~~~~~~~~l~vl~~iLg~~~~~sL~~~LRe~gla 427 (528)
.+. +. ....+............| .++..+.++++.... .++++.++.|++.|||+ ++|+.+||++|.|
T Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p-~~v~yv~~~~~~~~~-~~~d~~al~Vl~~iLg~---~~L~~eIREkgGA 1048 (1193)
T 3s5m_A 974 DPTVMGWNEEIKSKKLFDEEKVKKEFFVLP-TFVNSVSMSGILFKP-GEYLDPSFTVIVAALKN---SYLWDTVRGLNGA 1048 (1193)
T ss_dssp CCCCCCHHHHHHHTTCCCTTCCEEEEEECC-CSSBEEEEEEECSCT-TCBCCTHHHHHHHHHHH---THHHHHHTTTTCC
T ss_pred cccccccccccccccccccccccceeEecC-CcceEEEEEecCCCC-CCCchHHHHHHHHHHCc---cHHHHHHHhcCCe
Confidence 000 00 000111111122233333 345555555554332 34678999999999996 6899999977679
Q ss_pred ceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhccccCCCCCc
Q psy12151 428 IEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQ--SPISSEMYAEISNIHHIGFNYHSTKSS 505 (528)
Q Consensus 428 ysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~--~git~~el~~ak~~~~~~f~~~~~~~~ 505 (528)
|++++++. ..|.|.++...+| +..+.++.+.+.++.+++ .+++++||+++|..+...+. .-.+|
T Consensus 1049 Yg~~s~~~--------~~G~f~~~syrdp----~~~~tl~~~~~~~~~l~~~~~~~teeEL~~ak~~~~~~~d--~p~~p 1114 (1193)
T 3s5m_A 1049 YGVFADIE--------YDGSVVFLSARDP----NLEKTLATFRESAKGLRKMADTMTENDLLRYIINTIGTID--KPRRG 1114 (1193)
T ss_dssp SEEEEEEC--------TTSEEEEEEESBS----CSHHHHHHHHTHHHHHHHHHHHCCHHHHHHHHHHHHHHHS--CCCCT
T ss_pred eEEEEecc--------CCCcEEEEEEeCC----CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc--ccCCh
Confidence 99999873 3477877777776 677888888888888776 68999999999999998865 23445
Q ss_pred HHHHHHHHH
Q psy12151 506 VDYVEELSL 514 (528)
Q Consensus 506 ~~~~~~la~ 514 (528)
...+..+..
T Consensus 1115 ~~~a~~~~~ 1123 (1193)
T 3s5m_A 1115 IELSKLSFL 1123 (1193)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554444
No 22
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.50 E-value=9.9e-14 Score=129.23 Aligned_cols=131 Identities=12% Similarity=0.024 Sum_probs=114.4
Q ss_pred CCcceEEEEEEcCCccccccCCHHHHHHHHHhCCCCChHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccch
Q psy12151 379 DDVNVLYMTWYTPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQG 458 (528)
Q Consensus 379 ~~~~~l~l~f~~p~~~~~~~~~~l~vl~~iLg~~~~~sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g 458 (528)
..++.+.++|+.|... +++.+++.+++.+||++..++|++.||++|++|+++++... + .+.|.|.|++.+.++
T Consensus 22 ~~~~~v~~~~~~~~~~-~~d~~al~vl~~iLggg~sSrL~~~lre~gl~y~~~~~~~~--~---~~~g~~~i~~~~~~~- 94 (197)
T 3ih6_A 22 GGTPLVAAMYHLPAAG-SPDFVGLDLAATILADTPSSRLYHALVPTKLASGVFGFTMD--Q---LDPGLAMFGAQLQPG- 94 (197)
T ss_dssp CCSCEEEEEEECCCTT-STTHHHHHHHHHHHHSSTTSHHHHHHTTTTSCSEEEEEEET--T---SSSCEEEEEEECCTT-
T ss_pred CCCceEEEEEecCCCC-CCcHHHHHHHHHHHcCCCCchHHHHHHhcCceEEEEecccc--c---cCCeEEEEEEEECCC-
Confidence 4688999999999754 46889999999999998888999999977999999987753 2 678999999999884
Q ss_pred hccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHHccc
Q psy12151 459 VDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQY 518 (528)
Q Consensus 459 ~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~f~~~~~~~~~~~~~~la~~l~~ 518 (528)
.+++++++.+.++|+++++.|+++++|+++|+.+...+.. ..+++..++..++.++.+
T Consensus 95 -~~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~-~~~~~~~~a~~l~~~~~~ 152 (197)
T 3ih6_A 95 -MDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQ-TYADPEKVGVALSEAIAS 152 (197)
T ss_dssp -SCHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHH-HHTSHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHc
Confidence 3699999999999999999999999999999999999885 456788899998887764
No 23
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.00 E-value=0.00014 Score=66.66 Aligned_cols=162 Identities=6% Similarity=-0.051 Sum_probs=112.9
Q ss_pred ceEEEEEEecccCCcCCCCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEec------CCeEEEEEEcChh-h
Q psy12151 157 KLAALSLTIGVGSFCDGHIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTE------YETTTFYFDVPEP-H 229 (528)
Q Consensus 157 ~~v~i~l~v~~Gs~~e~~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~------~d~t~~~~~~~~~-~ 229 (528)
....+.+.+.+....+++. -...++..+|..|. + .-|.+.|...|...++++. .....+++.+.++ +
T Consensus 23 ~~~~v~~~~~~~~~~~~d~-~al~vl~~iLggg~---s--SrL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~~~~~~ 96 (197)
T 3ih6_A 23 GTPLVAAMYHLPAAGSPDF-VGLDLAATILADTP---S--SRLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPGMD 96 (197)
T ss_dssp CSCEEEEEEECCCTTSTTH-HHHHHHHHHHHSST---T--SHHHHHHTTTTSCSEEEEEEETTSSSCEEEEEEECCTTSC
T ss_pred CCceEEEEEecCCCCCCcH-HHHHHHHHHHcCCC---C--chHHHHHHhcCceEEEEeccccccCCeEEEEEEEECCCCC
Confidence 3667777777766554422 24456666666442 2 3355555555655444332 2234566667666 5
Q ss_pred HHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchH
Q psy12151 230 LKKSMDIFSNFFIS---PLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENE 306 (528)
Q Consensus 230 l~~~L~lla~~l~~---P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~ 306 (528)
++.+++.+...+.. -.+++++|++.|+.+...+....+++..++.......++ +.+. ......+.|.++|
T Consensus 97 ~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~-g~~~--~~~~~~~~i~~vT---- 169 (197)
T 3ih6_A 97 QDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIAS-GDWR--LFFLQRDRVREAK---- 169 (197)
T ss_dssp HHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHT-TCTT--HHHHHHHHHHTCC----
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHc-CCHH--HHHHHHHHHHhCC----
Confidence 88888888776644 469999999999999999999999998888877777666 3331 1122457889999
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEEcCC
Q psy12151 307 LYAALRNLQKTHYVANHMTLALQARL 332 (528)
Q Consensus 307 i~e~L~~f~~~~y~~~~~~LvivGdi 332 (528)
.++|+++.++|+.+++++++++|+.
T Consensus 170 -~~dv~~~a~~~l~~~~~~~~~~~P~ 194 (197)
T 3ih6_A 170 -LDDVQRAAVAYLVRSNRTEGRYIPT 194 (197)
T ss_dssp -HHHHHHHHHHHSSGGGCEEEEECC-
T ss_pred -HHHHHHHHHHhCCccCeEEEEEeCC
Confidence 9999999999999999999999864
No 24
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=97.76 E-value=0.00026 Score=72.86 Aligned_cols=164 Identities=10% Similarity=0.005 Sum_probs=111.6
Q ss_pred cceEEEEEEecccCCcCCCCCChHHHHHHHhccCCCCCCChhHHHHHHH-hcCCccceEecC------CeEEEEEEcChh
Q psy12151 156 EKLAALSLTIGVGSFCDGHIPGLAHFLEHMVFMGSEKYPEENDFDAFLS-TRGGSSNASTEY------ETTTFYFDVPEP 228 (528)
Q Consensus 156 ~~~v~i~l~v~~Gs~~e~~~~Glahllehllf~Gt~~~~~~~~l~~~L~-~~G~~~na~t~~------d~t~~~~~~~~~ 228 (528)
.....+.+.+.+....++ ......++.+++..| .+ .-|.+.|. +.|...++++.. ....+++.+.++
T Consensus 232 ~~q~~v~~~~~~~~~~~~-d~~~l~vl~~iLgg~---~~--srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~~~ 305 (421)
T 3hdi_A 232 TEQAHLCLGYPGLPIGDK-DVYALVLLNNVLGGS---MS--SRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHD 305 (421)
T ss_dssp CSEEEEEEEEECCCTTCT-THHHHHHHHHHHTSS---SS--SHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEEGG
T ss_pred CCceEEEEEEecCCCCCc-hHHHHHHHHHHhCCC---cc--cHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeCHH
Confidence 346777777776444333 223445566666543 22 33555554 457655544322 223455667777
Q ss_pred hHHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccch
Q psy12151 229 HLKKSMDIFSNFFI---SPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDEN 305 (528)
Q Consensus 229 ~l~~~L~lla~~l~---~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~ 305 (528)
+++.+++.+.+.+. .-.++++++++.|..+...+....+++..++.......++.+.+.. ..-..+.|.++|
T Consensus 306 ~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~vt--- 380 (421)
T 3hdi_A 306 QLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRS--LDEMIEQINAVQ--- 380 (421)
T ss_dssp GHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCCC--HHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHcCC---
Confidence 88888888776654 4479999999999999999999999988877766554444333321 112356788999
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEEcCCC
Q psy12151 306 ELYAALRNLQKTHYVANHMTLALQARLD 333 (528)
Q Consensus 306 ~i~e~L~~f~~~~y~~~~~~LvivGdi~ 333 (528)
.++|+++.++++ +++++++++|+.+
T Consensus 381 --~~dv~~~a~~~~-~~~~~~~vvgp~~ 405 (421)
T 3hdi_A 381 --KQDVSRLAKILL-SASPSISLINANG 405 (421)
T ss_dssp --HHHHHHHHHHHT-TSCCEEEEEESSC
T ss_pred --HHHHHHHHHHHc-ccCcEEEEECchh
Confidence 999999999999 9999999999764
No 25
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=97.59 E-value=0.0011 Score=68.26 Aligned_cols=166 Identities=7% Similarity=-0.041 Sum_probs=109.1
Q ss_pred eEEEEEEecccCCcCCCCCChHHHHHHHhccCCC------CCCChhHHHHHHHhcCCccceEec------CCeEEEEEEc
Q psy12151 158 LAALSLTIGVGSFCDGHIPGLAHFLEHMVFMGSE------KYPEENDFDAFLSTRGGSSNASTE------YETTTFYFDV 225 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~~~~Glahllehllf~Gt~------~~~~~~~l~~~L~~~G~~~na~t~------~d~t~~~~~~ 225 (528)
...+.+.+.+.....+ ......++.+++..|.. .++ .-|.+.|...|...+++.. .....+++.+
T Consensus 232 ~~~v~~~~~~~~~~~~-~~~~~~vl~~iL~~~~~~~~~~~~~~--s~L~~~lRe~gl~y~v~~~~~~~~~~g~~~i~~~~ 308 (431)
T 3cx5_A 232 KAWISLAVEGEPVNSP-NYFVAKLAAQIFGSYNAFEPASRLQG--IKLLDNIQEYQLCDNFNHFSLSYKDSGLWGFSTAT 308 (431)
T ss_dssp SEEEEEEEECCCTTCT-THHHHHHHHHHHCEEETTCTTGGGSS--CTHHHHHHTTTCCSEEEEEEEECSSCEEEEEEEEE
T ss_pred ceEEEEEeecCCCCCc-cHHHHHHHHHHcCCCccCCCCccccc--cHHHHHHHhcCceeeEeEeecccCCCceEEEEEee
Confidence 5667777776544333 22344567777753211 122 2355666666765544433 1233455666
Q ss_pred Ch-hhHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHHHHh--ccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcc
Q psy12151 226 PE-PHLKKSMDIFSNFFISP--LLKRDSIASEMDIVDSEFQS--SILNDTCRLEQLLATACTKENPAGKFVWGNLETLKN 300 (528)
Q Consensus 226 ~~-~~l~~~L~lla~~l~~P--~f~~~~~~~ek~~v~~e~~~--~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~ 300 (528)
.+ ++++.+++.+...+..- .+++++|++.|..+...+.. ..+++...+.......++.+.+.. ..-..+.|.+
T Consensus 309 ~~~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~i~~ 386 (431)
T 3cx5_A 309 RNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLS--LGEAFKKIDA 386 (431)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHhc
Confidence 66 77777776665543321 59999999999999999998 888888777766655432222332 1123567889
Q ss_pred cccchHHHHHHHHHHHhhcCCCCcEEEEEcCCC
Q psy12151 301 TVDENELYAALRNLQKTHYVANHMTLALQARLD 333 (528)
Q Consensus 301 it~~~~i~e~L~~f~~~~y~~~~~~LvivGdi~ 333 (528)
+| .++|+++.++++.+++++++++|+.+
T Consensus 387 vt-----~~dv~~~a~~~l~~~~~~~~v~g~~~ 414 (431)
T 3cx5_A 387 IT-----VKDVKAWAGKRLWDQDIAIAGTGQIE 414 (431)
T ss_dssp CC-----HHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred CC-----HHHHHHHHHHHcccCCcEEEEEcchh
Confidence 99 99999999999999999999999865
No 26
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=97.57 E-value=0.00038 Score=71.41 Aligned_cols=163 Identities=9% Similarity=-0.008 Sum_probs=113.5
Q ss_pred ceEEEEEEecccCCcCCCCCChHHHHHHHhccCCCCCCChhHHHHHHHhcCCccceEecC------CeEEEEEEcChhhH
Q psy12151 157 KLAALSLTIGVGSFCDGHIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEY------ETTTFYFDVPEPHL 230 (528)
Q Consensus 157 ~~v~i~l~v~~Gs~~e~~~~Glahllehllf~Gt~~~~~~~~l~~~L~~~G~~~na~t~~------d~t~~~~~~~~~~l 230 (528)
....+.+.+.+-...+++ .-...++.+++..|. + ..|.+.|...|....+++.. ....+++.+.++++
T Consensus 234 ~q~~~~~~~~~~~~~~~d-~~~l~vl~~iLgg~~---~--srL~~~lre~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~ 307 (406)
T 3eoq_A 234 RALYLVALFPGVAYQEEA-RFPGQVLAHLLGEEG---S--GRLHFALVDKGLAEVASFGLEEADRAGTFHAYVQADPARK 307 (406)
T ss_dssp SSEEEEEEEECCCTTCTT-HHHHHHHHHHHHCTT---T--SHHHHHTTTTTSEEEEEEEEEECSSCEEEEEEEEECGGGH
T ss_pred cceEEEEEecCCCCCCch-HHHHHHHHHHhCCCc---c--hHHHHHHHHcCCeeEEEEEecccCCceEEEEEEEeCcchH
Confidence 466777777765554442 224455666665432 2 34555565566544443322 23456667788888
Q ss_pred HHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHH
Q psy12151 231 KKSMDIFSNFFIS---PLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENEL 307 (528)
Q Consensus 231 ~~~L~lla~~l~~---P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i 307 (528)
+.+++.+...+.. -.++++++++.|+.+...+....+++..++.......++.+.+.. ..-..+.|.++|
T Consensus 308 ~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~vt----- 380 (406)
T 3eoq_A 308 GEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLS--LEEVKARVQRVT----- 380 (406)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHhCC-----
Confidence 8888888776654 359999999999999999999999998888777766665443321 112356789999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEcCCC
Q psy12151 308 YAALRNLQKTHYVANHMTLALQARLD 333 (528)
Q Consensus 308 ~e~L~~f~~~~y~~~~~~LvivGdi~ 333 (528)
.++|+++.++++.++++ ++++|+..
T Consensus 381 ~~dv~~~a~~~l~~~~~-~~vvGp~~ 405 (406)
T 3eoq_A 381 SREVNALLERGFLEKGL-YYLVLPHG 405 (406)
T ss_dssp HHHHHHHHHTTTTTSCE-EEEEECCC
T ss_pred HHHHHHHHHHhcCcccE-EEEECCCC
Confidence 99999999999999999 99999753
No 27
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=97.55 E-value=0.00064 Score=70.07 Aligned_cols=165 Identities=9% Similarity=0.044 Sum_probs=109.4
Q ss_pred ceEEEEEEecccCCcCCCCCChHHHHHHHhccCCCCCCChhHHHHHHHh-cCCccceEecC------CeEEEEEEcChhh
Q psy12151 157 KLAALSLTIGVGSFCDGHIPGLAHFLEHMVFMGSEKYPEENDFDAFLST-RGGSSNASTEY------ETTTFYFDVPEPH 229 (528)
Q Consensus 157 ~~v~i~l~v~~Gs~~e~~~~Glahllehllf~Gt~~~~~~~~l~~~L~~-~G~~~na~t~~------d~t~~~~~~~~~~ 229 (528)
..+.+.+.+.+.....++ .....++.+++-.| ... .-|.+.|.. .|+.+.+++.. -...+++.+.+++
T Consensus 248 ~~~~v~~~~~~~~~~~~d-~~~l~vl~~iLg~~--~~~--s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~~~~~~~ 322 (434)
T 3gwb_A 248 SQTSLMLAQLGIDRDDPD-YAAVSLGNQILGGG--GFG--TRLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQTRAEM 322 (434)
T ss_dssp SEEEEEEEEECCBTTCTT-HHHHHHHHHHHHSS--SSC--SHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEEEEGGG
T ss_pred CceeEEecCcCCCCCCcc-hHHHHHHHHHhCCC--ccc--chhHHHHHhhcCCcceeeeecccCCCceeEEEEEecchhh
Confidence 466777777665544432 23445566665433 122 235555553 46555444432 2345667777777
Q ss_pred HHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchH
Q psy12151 230 LKKSMDIFSNFFIS---PLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENE 306 (528)
Q Consensus 230 l~~~L~lla~~l~~---P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~ 306 (528)
.+.+++.+...+.. -.+++++|++.|..+...+....+++..++........++. ++.. ..-..+.|.++|
T Consensus 323 ~~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~i~~vt---- 396 (434)
T 3gwb_A 323 SEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGFYNL-PLSY-LEDFMRQSQELT---- 396 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHTTC-CTTH-HHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHcCC-CccH-HHHHHHHHHhCC----
Confidence 88888777766644 46899999999999999999999999888877776655543 3211 112356788999
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEEcCCC
Q psy12151 307 LYAALRNLQKTHYVANHMTLALQARLD 333 (528)
Q Consensus 307 i~e~L~~f~~~~y~~~~~~LvivGdi~ 333 (528)
.++|+++.++++.+++++++++|+..
T Consensus 397 -~~dv~~~a~~~l~~~~~~~~vvg~~~ 422 (434)
T 3gwb_A 397 -VEQVKAAMNKHLNVDKMVIVSAGPTV 422 (434)
T ss_dssp -HHHHHHHHHHHCCGGGCEEEEEECCC
T ss_pred -HHHHHHHHHHhcChhhEEEEEEcCcc
Confidence 99999999999999999999999644
No 28
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=97.52 E-value=0.0018 Score=66.95 Aligned_cols=167 Identities=8% Similarity=-0.010 Sum_probs=110.2
Q ss_pred ceEEEEEEecccCCcCCCCCChHHHHHHHhcc-----CCCCCCChhHHHHHHH-hcCCccceEec------CCeEEEEEE
Q psy12151 157 KLAALSLTIGVGSFCDGHIPGLAHFLEHMVFM-----GSEKYPEENDFDAFLS-TRGGSSNASTE------YETTTFYFD 224 (528)
Q Consensus 157 ~~v~i~l~v~~Gs~~e~~~~Glahllehllf~-----Gt~~~~~~~~l~~~L~-~~G~~~na~t~------~d~t~~~~~ 224 (528)
....+.+.+.+....++ ......++.+++-. |.+.+.. .-|.+.+. ..|...+++.. .....+++.
T Consensus 245 ~~~~v~~~~~~~~~~~~-~~~~l~vl~~iLg~~~r~~~~g~~~~-s~L~~~lre~~glay~~~~~~~~~~~~g~~~i~~~ 322 (443)
T 1hr6_B 245 PTTHIAIALEGVSWSAP-DYFVALATQAIVGNWDRAIGTGTNSP-SPLAVAASQNGSLANSYMSFSTSYADSGLWGMYIV 322 (443)
T ss_dssp SEEEEEEEEECCCTTCT-THHHHHHHHHHHCEEETTTBCSSSSC-CHHHHHHHSTTCSCSEEEEEEEECSSCEEEEEEEE
T ss_pred cceEEEEEEecCCCCCc-cHHHHHHHHHHhCCCcccCCCCCCcc-cHHHHHHHHHcCCeEEEEeeecCCCCceEEEEEEE
Confidence 46777777776544333 22344556777642 1121222 34555565 66654433322 223455566
Q ss_pred cC--hhhHHHHHHHHHHhh---hCCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhc
Q psy12151 225 VP--EPHLKKSMDIFSNFF---ISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLK 299 (528)
Q Consensus 225 ~~--~~~l~~~L~lla~~l---~~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~ 299 (528)
+. +++++.+++.+...+ .+-.++++++++.|..+...+....+++..++.......++.+.+.. ..-..+.|.
T Consensus 323 ~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~i~ 400 (443)
T 1hr6_B 323 TDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLS--PEEVFEQVD 400 (443)
T ss_dssp EETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCC--HHHHHHHHH
T ss_pred ecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcCC--HHHHHHHHH
Confidence 66 678888888776654 45569999999999999999999888887766655554432222332 112356788
Q ss_pred ccccchHHHHHHHHHHHhhcCCCCcEEEEEcCC
Q psy12151 300 NTVDENELYAALRNLQKTHYVANHMTLALQARL 332 (528)
Q Consensus 300 ~it~~~~i~e~L~~f~~~~y~~~~~~LvivGdi 332 (528)
++| .++|+++.++++.+++++++++|+.
T Consensus 401 ~vt-----~~dv~~~a~~~l~~~~~~~~v~g~~ 428 (443)
T 1hr6_B 401 KIT-----KDDIIMWANYRLQNKPVSMVALGNT 428 (443)
T ss_dssp TCC-----HHHHHHHHHHHSSSCCEEEEEEECG
T ss_pred hCC-----HHHHHHHHHHHhccCCcEEEEECCc
Confidence 999 9999999999999999999999975
No 29
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=97.47 E-value=0.0013 Score=68.91 Aligned_cols=165 Identities=7% Similarity=0.024 Sum_probs=109.1
Q ss_pred eEEEEEEecccCCcCCCCCChHHHHHHHhccC-------C-CCCCChhHHHHHH-HhcCCccceEec------CCeEEEE
Q psy12151 158 LAALSLTIGVGSFCDGHIPGLAHFLEHMVFMG-------S-EKYPEENDFDAFL-STRGGSSNASTE------YETTTFY 222 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~~~~Glahllehllf~G-------t-~~~~~~~~l~~~L-~~~G~~~na~t~------~d~t~~~ 222 (528)
...+.+.+.+.....++ .....++.+++-.| . +.+.. .|.+.| ++.|...+++.. .....++
T Consensus 243 ~~~v~~~~~~~~~~~~d-~~~l~vl~~iLg~~~~f~~gg~g~~~~s--~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~ 319 (475)
T 1hr6_A 243 LFHIQIGFEGLPIDHPD-IYALATLQTLLGGGGSFSAGGPGKGMYS--RLYTHVLNQYYFVENCVAFNHSYSDSGIFGIS 319 (475)
T ss_dssp CEEEEEEEECCCTTCTT-HHHHHHHHHHHCEEESSCCSSTTSCTTS--HHHHHTTTTCSSEEEEEEEEEECSSCEEEEEE
T ss_pred ceEEEEEEecCCCCCcc-HHHHHHHHHHhCCCcccccCCCCCCcCC--HHHHHHHHhcCCeeEEEEeccccCCCceEEEE
Confidence 56777777754444332 22345566666422 1 11222 344444 445654333221 2234566
Q ss_pred EEcChhhHHHHHHHHHHhhhC------CCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChh
Q psy12151 223 FDVPEPHLKKSMDIFSNFFIS------PLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLE 296 (528)
Q Consensus 223 ~~~~~~~l~~~L~lla~~l~~------P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e 296 (528)
+.+.++++..+++.+...+.. -.|++++|++.|..+...+....+++...+.......+..+.+.. ..-..+
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~ 397 (475)
T 1hr6_A 320 LSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIP--VNEMIS 397 (475)
T ss_dssp EEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCC--HHHHHH
T ss_pred EEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCC--HHHHHH
Confidence 778888899888888776654 249999999999999999998888888777666664433233432 112356
Q ss_pred hhcccccchHHHHHHHHHHHhhcCC---------CCcEEEEEcCC
Q psy12151 297 TLKNTVDENELYAALRNLQKTHYVA---------NHMTLALQARL 332 (528)
Q Consensus 297 ~L~~it~~~~i~e~L~~f~~~~y~~---------~~~~LvivGdi 332 (528)
.|.++| .++|+++.++++.+ .+++++++|+.
T Consensus 398 ~i~~vt-----~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~ 437 (475)
T 1hr6_A 398 KIEDLK-----PDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDR 437 (475)
T ss_dssp HHHTCC-----HHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCG
T ss_pred HHHcCC-----HHHHHHHHHHHhhhccccccccCCCcEEEEECCc
Confidence 789999 99999999999988 58999999987
No 30
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=97.44 E-value=0.0015 Score=67.04 Aligned_cols=165 Identities=10% Similarity=0.001 Sum_probs=109.8
Q ss_pred ceEEEEEEecccCCcCCCCCChHHHHHHHhccCCCCCCChhHHHHHHH-hcCCccceEecC------CeEEEEEEcChhh
Q psy12151 157 KLAALSLTIGVGSFCDGHIPGLAHFLEHMVFMGSEKYPEENDFDAFLS-TRGGSSNASTEY------ETTTFYFDVPEPH 229 (528)
Q Consensus 157 ~~v~i~l~v~~Gs~~e~~~~Glahllehllf~Gt~~~~~~~~l~~~L~-~~G~~~na~t~~------d~t~~~~~~~~~~ 229 (528)
....+.+.+.+.....+ ......++.+++..| ... .-|.+.|. +.|...++++.. ....+++.+.+++
T Consensus 241 ~~~~v~~~~~~~~~~~~-~~~~~~vl~~iLg~~--~~~--srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~~~~~~~~ 315 (424)
T 3amj_B 241 TQAHIAIGMPTLKRGDP-DFFPLVVGNYALGGG--GFE--SRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRAEK 315 (424)
T ss_dssp SEEEEEEEEEEEBTTCT-THHHHHHHHHHHTTS--GGG--SHHHHHHTTTTCCEEEEEEEECCBSSCEEEEEEEEEESTT
T ss_pred CccEEEeeccCCCCCCc-chHHHHHHHHHhCCC--Ccc--chhHHHHHHhCCeEEEeeeeeccCCCceeEEEEEEeCccc
Confidence 46777777775444333 223445566665432 122 23555565 456555443322 2244555666777
Q ss_pred HHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchH
Q psy12151 230 LKKSMDIFSNFFI---SPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENE 306 (528)
Q Consensus 230 l~~~L~lla~~l~---~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~ 306 (528)
++.+++.+...+. +-.+++++|++.|+.+...+....+++..++........++ .|+... .-..+.|.++|
T Consensus 316 ~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~i~~vt---- 389 (424)
T 3amj_B 316 ADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGYYG-LPLDYL-DHYTERVQAVT---- 389 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHHHTT-CCTTTT-TSHHHHHHTCC----
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHHHcC-CChhHH-HHHHHHHHcCC----
Confidence 7777777766554 34599999999999999999888888887777666555543 343321 12457899999
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEEcCCC
Q psy12151 307 LYAALRNLQKTHYVANHMTLALQARLD 333 (528)
Q Consensus 307 i~e~L~~f~~~~y~~~~~~LvivGdi~ 333 (528)
.++|+++.++++.|++++++++|+..
T Consensus 390 -~~dv~~~a~~~l~~~~~~~~~~~~~~ 415 (424)
T 3amj_B 390 -VEQVREAFARHVKRENLITVVVGGKA 415 (424)
T ss_dssp -HHHHHHHHHHHCCGGGCEEEEEECC-
T ss_pred -HHHHHHHHHHhcCccceEEEEECChh
Confidence 99999999999999999999999864
No 31
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=97.40 E-value=0.0016 Score=67.59 Aligned_cols=165 Identities=7% Similarity=-0.005 Sum_probs=109.5
Q ss_pred eEEEEEEecccCCcCCCCCChHHHHHHHhccC-----C-CCCCChhHHHHHHHhcCCccceEec----CC--eEEEEEEc
Q psy12151 158 LAALSLTIGVGSFCDGHIPGLAHFLEHMVFMG-----S-EKYPEENDFDAFLSTRGGSSNASTE----YE--TTTFYFDV 225 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~~~~Glahllehllf~G-----t-~~~~~~~~l~~~L~~~G~~~na~t~----~d--~t~~~~~~ 225 (528)
...+.+.+.+....++ ......++.+++-.+ . +.++ .-|.+.+...|+..+++.. .+ ...+++.+
T Consensus 250 ~~~v~~~~~~~~~~~~-d~~al~vl~~iLg~~~~~~~~g~~~~--srL~~~lr~~glay~~~s~~~~~~~~g~~~i~~~~ 326 (446)
T 1pp9_A 250 LAHVAIAVEGPGWAHP-DNVALQVANAIIGHYDCTYGGGAHLS--SPLASIAATNKLCQSFQTFNICYADTGLLGAHFVC 326 (446)
T ss_dssp SEEEEEEEEECCTTCT-HHHHHHHHHHHHCEEETTCSCGGGCS--SHHHHHHHHHTCCSEEEEEEEECSSCEEEEEEEEE
T ss_pred ceEEEEEEecCCCCCc-cHHHHHHHHHHhCCCcccCCCCCCCC--CHHHHHHHhcCCeEEEEEecccCCCCeEEEEEEEE
Confidence 5667777775554444 223455677777421 0 1222 3355556666655433332 22 24555667
Q ss_pred ChhhHHHHHHHHHHhh---hCCCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccc
Q psy12151 226 PEPHLKKSMDIFSNFF---ISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTV 302 (528)
Q Consensus 226 ~~~~l~~~L~lla~~l---~~P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it 302 (528)
.+++++.+++.+...+ .+. ++++++++.|..+...+....+++..++.......++.+.+... .-..+.|.++|
T Consensus 327 ~~~~~~~~~~~i~~~l~~l~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~i~~vt 403 (446)
T 1pp9_A 327 DHMSIDDMMFVLQGQWMRLCTS-ATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPL--AEWESRIAEVD 403 (446)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSSCCCH--HHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCH--HHHHHHHHcCC
Confidence 7778888887776654 234 99999999999999999988888887776665554333334321 12356788999
Q ss_pred cchHHHHHHHHHHHhhcCCCCcEEEEEcCCC
Q psy12151 303 DENELYAALRNLQKTHYVANHMTLALQARLD 333 (528)
Q Consensus 303 ~~~~i~e~L~~f~~~~y~~~~~~LvivGdi~ 333 (528)
.++|+++.++++.+++++++++|+.+
T Consensus 404 -----~edv~~~a~~~~~~~~~~~~~~g~~~ 429 (446)
T 1pp9_A 404 -----ARVVREVCSKYFYDQCPAVAGFGPIE 429 (446)
T ss_dssp -----HHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred -----HHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 99999999999999999999999864
No 32
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=97.23 E-value=0.0027 Score=65.37 Aligned_cols=166 Identities=11% Similarity=0.079 Sum_probs=109.3
Q ss_pred ceEEEEEEecccCCcCCCCCChHHHHHHHhccCC-----CCCCChhHHHHHHH-hcCCccceEec----CCe--EEEEEE
Q psy12151 157 KLAALSLTIGVGSFCDGHIPGLAHFLEHMVFMGS-----EKYPEENDFDAFLS-TRGGSSNASTE----YET--TTFYFD 224 (528)
Q Consensus 157 ~~v~i~l~v~~Gs~~e~~~~Glahllehllf~Gt-----~~~~~~~~l~~~L~-~~G~~~na~t~----~d~--t~~~~~ 224 (528)
....+.+.+.+.....++ .....++.+++..|. ..+. .-|.+.|. +.|...+++.. .+. ..+++.
T Consensus 251 ~~~~v~~~~~~~~~~~~~-~~~~~ll~~iLg~~~~~~~~~g~~--s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~ 327 (439)
T 1pp9_B 251 SLVHAALVAESAAIGSAE-ANAFSVLQHVLGAGPHVKRGSNAT--SSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTI 327 (439)
T ss_dssp SEEEEEEEEECCCTTSHH-HHHHHHHHHHHCCSCSBTTCCCTT--CHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEE
T ss_pred cceEEEEEecCCCCCchH-HHHHHHHHHHhCCCcccCCCCCcc--CHHHHHHHHhcCCceEEEEeeccccccceEEEEEE
Confidence 467777777754443322 223455666664321 1123 33555555 55655444332 222 345566
Q ss_pred cChhhHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhccc
Q psy12151 225 VPEPHLKKSMDIFSNFFIS---PLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNT 301 (528)
Q Consensus 225 ~~~~~l~~~L~lla~~l~~---P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~i 301 (528)
+.+++++.+++.+...+.. -.+++++|++.|..+...+....+++...+........+.+.+.. ..-..+.|.++
T Consensus 328 ~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~v 405 (439)
T 1pp9_B 328 SQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTP--PSTVLQQIDAV 405 (439)
T ss_dssp EEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHTC
T ss_pred eCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHhcC
Confidence 6777888888877666543 469999999999999999998888888777766665554343321 22245678999
Q ss_pred ccchHHHHHHHHHHHhhcCCCCcEEEEEcCCC
Q psy12151 302 VDENELYAALRNLQKTHYVANHMTLALQARLD 333 (528)
Q Consensus 302 t~~~~i~e~L~~f~~~~y~~~~~~LvivGdi~ 333 (528)
| .++|+++.++++. ++++++++|+.+
T Consensus 406 t-----~~dv~~~a~~~~~-~~~~~~v~g~~~ 431 (439)
T 1pp9_B 406 A-----DADVINAAKKFVS-GRKSMAASGNLG 431 (439)
T ss_dssp C-----HHHHHHHHHHHHH-SCEEEEEEECGG
T ss_pred C-----HHHHHHHHHHHhc-CCceEEEECCcc
Confidence 9 9999999999988 899999999753
No 33
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=96.92 E-value=0.0064 Score=62.91 Aligned_cols=163 Identities=8% Similarity=-0.100 Sum_probs=105.4
Q ss_pred eEEEEEEecccC---CcCC-CCCChHHHHHHHhccCCCCCCChhHHHHHH-HhcCCccceEec-----CC-eE--EEEEE
Q psy12151 158 LAALSLTIGVGS---FCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFL-STRGGSSNASTE-----YE-TT--TFYFD 224 (528)
Q Consensus 158 ~v~i~l~v~~Gs---~~e~-~~~Glahllehllf~Gt~~~~~~~~l~~~L-~~~G~~~na~t~-----~d-~t--~~~~~ 224 (528)
...+.+.+.+.. ..+. +.. ...++.+++..|. + .-|.+.| +..|...+++.+ .+ .. .+++.
T Consensus 244 ~~~v~l~~~~~~~~~~~~~~~~~-~~~vl~~iLg~~~---~--srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~i~~~ 317 (445)
T 3ami_A 244 LPYLALAWHVPAIVDLDKSRDAY-ALEILAAVLDGYD---G--ARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGV 317 (445)
T ss_dssp SCEEEEEEEECCCSSTTCCHHHH-HHHHHHHHHHSST---T--CHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEEEEEE
T ss_pred ccEEEEEEEcCCcccccCChhHH-HHHHHHHHHcCCc---c--hHHHHHHhhcCCcEEEEEeeccccccCCCCeEEEEEE
Confidence 345666666555 3312 221 3345666665432 2 3355544 466655444332 22 23 34444
Q ss_pred cChh-hHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcc
Q psy12151 225 VPEP-HLKKSMDIFSNFFIS---PLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKN 300 (528)
Q Consensus 225 ~~~~-~l~~~L~lla~~l~~---P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~ 300 (528)
+.++ +++.+++.+...+.. -.++++++++.|+.+...+....+++..++..+....+++..+. ...-..+.|.+
T Consensus 318 ~~~~~~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~i~~ 395 (445)
T 3ami_A 318 PSKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSWR--DDDRFYQQLRS 395 (445)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTTCCTT--HHHHHHHHHHT
T ss_pred ECCCCCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCChH--HHHHHHHHHHc
Confidence 5555 477777766655543 34899999999999999999988888887777776666654221 11123567889
Q ss_pred cccchHHHHHHHHHHHhhcCCCCcEEEEEcCCC
Q psy12151 301 TVDENELYAALRNLQKTHYVANHMTLALQARLD 333 (528)
Q Consensus 301 it~~~~i~e~L~~f~~~~y~~~~~~LvivGdi~ 333 (528)
++ .++|.++.++++.+++++++++|+..
T Consensus 396 vt-----~~dv~~~a~~~l~~~~~~~~~~~p~~ 423 (445)
T 3ami_A 396 VT-----AAEVKAAAARLLTDDTLTVANLVPLP 423 (445)
T ss_dssp CC-----HHHHHHHHHTTSCSTTEEEEEEEEEC
T ss_pred CC-----HHHHHHHHHHHcCcCCeEEEEEccCc
Confidence 99 99999999999999999999999653
No 34
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=96.61 E-value=0.05 Score=55.32 Aligned_cols=159 Identities=8% Similarity=0.017 Sum_probs=104.1
Q ss_pred eEEEEEEecccC-CcCCCCCChHHHHHHHhccCCCCCCChhHHHHHHH-hcCCccceEec----CCeEEEEEEcChhhHH
Q psy12151 158 LAALSLTIGVGS-FCDGHIPGLAHFLEHMVFMGSEKYPEENDFDAFLS-TRGGSSNASTE----YETTTFYFDVPEPHLK 231 (528)
Q Consensus 158 ~v~i~l~v~~Gs-~~e~~~~Glahllehllf~Gt~~~~~~~~l~~~L~-~~G~~~na~t~----~d~t~~~~~~~~~~l~ 231 (528)
...+.+.+.++. ...+ ......++.+++..|. . .-|.+.|. +.|...+++.. .....+++.+.+++++
T Consensus 254 ~~~v~~~~~~~~~~~~~-~~~~~~vl~~iLg~~~---~--s~L~~~lRe~~glaY~v~~~~~~~~g~~~i~~~~~~~~~~ 327 (425)
T 3d3y_A 254 QSKLNLAYNTDIYYGDS-YYFALQVFNGIFGGFP---H--SKLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDGKNRN 327 (425)
T ss_dssp SEEEEEEEECCCCTTST-THHHHHHHHHHHTTST---T--SHHHHHTTTTSCCCSEEEEEEETTTTEEEEEEEECGGGHH
T ss_pred ccEEEEEeecCCCCCCc-hHHHHHHHHHHhCCCh---h--hHHHHHHHHhcCeEEEEeccccccCceEEEEEecCHhhHH
Confidence 566777777652 3322 2345566777775332 2 34555565 45665544432 2345566677788888
Q ss_pred HHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCCCCChhhhcccccchHHH
Q psy12151 232 KSMDIFSNFFIS---PLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELY 308 (528)
Q Consensus 232 ~~L~lla~~l~~---P~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~L~~it~~~~i~ 308 (528)
.+++.+...+.. -.+++++|++.|..+...+....+++..++.......++.+.+.. ..-..+.|.++| .
T Consensus 328 ~~~~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~i~~vt-----~ 400 (425)
T 3d3y_A 328 QVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTMLT--AEEWIARINAVT-----I 400 (425)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSTTSCCC--HHHHHHHHHHCC-----H
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhhcCCCCC--HHHHHHHHHhCC-----H
Confidence 888777665443 469999999999999999998888888877777666665333321 222356788999 9
Q ss_pred HHHHHHHHhhcCCCCcEEEEEcC
Q psy12151 309 AALRNLQKTHYVANHMTLALQAR 331 (528)
Q Consensus 309 e~L~~f~~~~y~~~~~~LvivGd 331 (528)
++|+++.+++ .++++. +++|+
T Consensus 401 edv~~~a~~~-~~~~~~-~v~g~ 421 (425)
T 3d3y_A 401 PEIQEVAKRL-ELQAIF-FLEGE 421 (425)
T ss_dssp HHHHHHHHHC-EEEEEE-EEEEE
T ss_pred HHHHHHHHhc-cCceEE-EEeCC
Confidence 9999999986 455544 55553
No 35
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=95.29 E-value=0.31 Score=51.04 Aligned_cols=172 Identities=11% Similarity=0.038 Sum_probs=98.2
Q ss_pred eEEEEEEecccCCcCCCCCCh-----HHHHHHHhccCCCCCCChhHHHHHHH---hcCCccceEe----cCCeEEEEEEc
Q psy12151 158 LAALSLTIGVGSFCDGHIPGL-----AHFLEHMVFMGSEKYPEENDFDAFLS---TRGGSSNAST----EYETTTFYFDV 225 (528)
Q Consensus 158 ~v~i~l~v~~Gs~~e~~~~Gl-----ahllehllf~Gt~~~~~~~~l~~~L~---~~G~~~na~t----~~d~t~~~~~~ 225 (528)
...+.+.+++.....++...+ ..++.++++. .+...+. +.|....++. ......|.+.+
T Consensus 266 q~~v~l~~~~~~~~~~d~~~l~~~~~~~v~~~iLg~---------~L~~~lre~~~~gl~y~~~s~~~~~~~~~~~~i~~ 336 (492)
T 3go9_A 266 QDTLSLMWDTPWHPIQDSMALSRYWRSDLAREALFW---------HIKQVLEKNNQKNLKLGFDCRVQYQRAQCAIHLNT 336 (492)
T ss_dssp SEEEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHH---------HHHHHHHHSCCTTCEEEEEEEEETTEEEEEEEEEE
T ss_pred CcEEEEEecCCCCCcccHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhccccccccCchhhhhhcceEEEEEc
Confidence 556666666655443322222 2455555551 2333343 3443333322 22345677788
Q ss_pred ChhhHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHhccC-----ChHHHHHHHHHHHcCCCCCCCCCCC--CC-
Q psy12151 226 PEPHLKKSMDIFSNFFIS---PLLKRDSIASEMDIVDSEFQSSIL-----NDTCRLEQLLATACTKENPAGKFVW--GN- 294 (528)
Q Consensus 226 ~~~~l~~~L~lla~~l~~---P~f~~~~~~~ek~~v~~e~~~~~~-----~p~~~~~~~~~~~~~~~~p~~~~~~--G~- 294 (528)
..++++.+++.+...+.. -.|+++++++.|..+...+....+ +...++.+.+...... .++..+.. -.
T Consensus 337 ~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~ 415 (492)
T 3go9_A 337 PVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSG-VVDIAPEQYQKLR 415 (492)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHT-CCCBCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcCCHHHHHHHH
Confidence 889999988888776554 469999999999999988876533 3444445544433322 12211100 01
Q ss_pred hhhhcccccchHHHHHHHHHHHhhcCCCCcEEEEEcCCCHHH-HHHHHHHH
Q psy12151 295 LETLKNTVDENELYAALRNLQKTHYVANHMTLALQARLDLPT-LEAWVVEH 344 (528)
Q Consensus 295 ~e~L~~it~~~~i~e~L~~f~~~~y~~~~~~LvivGdi~~d~-l~~lv~~~ 344 (528)
.+.|.++| .++|+++.++++.+++..++|.+.-..+. +..++..|
T Consensus 416 ~~~i~~vT-----~edV~~~a~~~l~~~~~~vvvg~~~~~e~~~~~l~~~~ 461 (492)
T 3go9_A 416 QAFLSGLT-----LAELNRELKQQLSQDTTLVLMQPKGEPEVNVKALQEIY 461 (492)
T ss_dssp HHHHHHCC-----HHHHHHHHHHHHTSCCEEEEEEETTSCCCCHHHHHHHH
T ss_pred HHHHhcCC-----HHHHHHHHHHHhCCCCeEEEEcCCCCCCccHHHHHHHH
Confidence 13478899 99999999999997644444444333332 44444443
No 36
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=73.67 E-value=28 Score=33.60 Aligned_cols=118 Identities=8% Similarity=0.037 Sum_probs=67.9
Q ss_pred cceEEEEEEcCCcc-ccccCCHHHHHHHHHhCCCCC----hHHHHHHHccccceeEeeeccccccccCcceEEEEEEEec
Q psy12151 381 VNVLYMTWYTPPVQ-QLYKTKPLDVLSWFIGHEGPG----SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLT 455 (528)
Q Consensus 381 ~~~l~l~f~~p~~~-~~~~~~~l~vl~~iLg~~~~~----sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~ 455 (528)
.+.+.+.+.++.-. .....-..+++.+++..|... .+...+...|..++++.. .+. ..+++.+.
T Consensus 10 ~~~v~~~~~~~~Gs~~e~~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~---------~~~--t~~~~~~~ 78 (352)
T 3cx5_B 10 TKISTLAVKVHGGSRYATKDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLD---------REY--ITLKATFL 78 (352)
T ss_dssp CSEEEEEEEESCSGGGCSSTTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEEC---------SSC--EEEEEEEE
T ss_pred CceEEEEEEEeeeccCCCcccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEc---------cce--EEEEEEec
Confidence 33444444443222 122456788888888753222 244555556664444332 222 33455565
Q ss_pred cchhccHHHHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHhccccCCCCCcHHHHHHHHHHc
Q psy12151 456 DQGVDQIQHIMDIIFQYLRLLSQSPISSEMYA-EISNIHHIGFNYHSTKSSVDYVEELSLHM 516 (528)
Q Consensus 456 ~~g~~~~~~v~~~i~~~l~~L~~~git~~el~-~ak~~~~~~f~~~~~~~~~~~~~~la~~l 516 (528)
+ ++++.+++.+.+.+.. -.+++++++ +.|+.+...+. ....+|..++......+
T Consensus 79 ~---~~l~~~l~ll~d~~~~---p~f~~~~~~~~~k~~v~~e~~-~~~~~p~~~~~~~~~~~ 133 (352)
T 3cx5_B 79 K---DDLPYYVNALADVLYK---TAFKPHELTESVLPAARYDYA-VAEQCPVKSAEDQLYAI 133 (352)
T ss_dssp G---GGHHHHHHHHHHHHHH---BCCCHHHHHHTHHHHHHHHHH-HHHTCHHHHHHHHHHHH
T ss_pred h---hhHHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 5 3777777777766644 358999998 88888777766 34556766665544444
No 37
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=51.74 E-value=44 Score=28.13 Aligned_cols=67 Identities=19% Similarity=0.168 Sum_probs=46.2
Q ss_pred hHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy12151 416 SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHH 494 (528)
Q Consensus 416 sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~ 494 (528)
++...|.++||+.-...... .-. +.+.+|+.|.+-++++...+.+....+.. ++++++++.....+.
T Consensus 65 ~~v~~Le~~GlV~R~~~~~D---------rR~--~~l~LT~~G~~~~~~~~~~~~~~~~~~~~-~l~~ee~~~l~~~L~ 131 (151)
T 4aik_A 65 RTLDQLEEKGLITRHTSAND---------RRA--KRIKLTEQSSPIIEQVDGVISSTRKEILG-GISSDEIAVLSGLID 131 (151)
T ss_dssp HHHHHHHHTTSEEEEECSSC---------TTC--EEEEECGGGHHHHHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCeEeecCCCC---------Ccc--hhhhcCHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 45567778999876543221 111 35677888877777777777777777765 899999888776654
No 38
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=43.42 E-value=5 Score=38.11 Aligned_cols=6 Identities=33% Similarity=0.385 Sum_probs=0.0
Q ss_pred cccCCC
Q psy12151 118 EESGNE 123 (528)
Q Consensus 118 ~~~~~~ 123 (528)
|++|+|
T Consensus 226 ~~~d~e 231 (264)
T 2zd7_A 226 EEGESG 231 (264)
T ss_dssp ------
T ss_pred Cccccc
Confidence 333333
No 39
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=43.28 E-value=5 Score=40.65 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCccchh
Q psy12151 121 GNESGDETASSVDSQGMEVDE 141 (528)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~ 141 (528)
+++|+++|+|++|++++++|+
T Consensus 376 ~~~~~~~~~de~~~~~~~~~~ 396 (417)
T 2ayu_A 376 ADEDEDEEEDDDHGLEDDDGE 396 (417)
T ss_dssp ---------------------
T ss_pred ccccccccccccccccccccc
Confidence 344455666655554443333
No 40
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=43.08 E-value=49 Score=28.18 Aligned_cols=71 Identities=8% Similarity=0.008 Sum_probs=48.4
Q ss_pred hHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 416 SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 416 sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
++.+.|.++||+....... +... ..+.+++.|..-+.++...+...+..+.. ++++++++...+.+..
T Consensus 78 ~~l~~Le~~GlV~r~~~~~---------DrR~--~~~~LT~~G~~~~~~~~~~~~~~~~~~~~-~l~~ee~~~l~~~L~~ 145 (168)
T 2nyx_A 78 RMVDRLVGAELIDRLPHPT---------SRRE--LLAALTKRGRDVVRQVTEHRRTEIARIVE-QMAPAERHGLVRALTA 145 (168)
T ss_dssp HHHHHHHHTTSEEEEECSS---------CSSC--EEEEECHHHHHHHHHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEeccCCC---------CCCe--eEEEECHHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHH
Confidence 3456777899987643221 1111 24567888877777777777777777776 8999999888887775
Q ss_pred ccc
Q psy12151 496 GFN 498 (528)
Q Consensus 496 ~f~ 498 (528)
-..
T Consensus 146 l~~ 148 (168)
T 2nyx_A 146 FTE 148 (168)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 41
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=41.11 E-value=73 Score=25.77 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=46.5
Q ss_pred hHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 416 SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 416 sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
++...|.++||+........ .. ...+.+++.|.+-..++...+......+.. ++++++++.....+..
T Consensus 66 ~~l~~Le~~Gli~r~~~~~D---------~R--~~~~~LT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~l~~ 133 (139)
T 3eco_A 66 NLLRNLERKKLIYRYVDAQD---------TR--RKNIGLTTSGIKLVEAFTSIFDEMEQTLVS-QLSEEENEQMKANLTK 133 (139)
T ss_dssp HHHHHHHHTTSEEEEECCC-----------C--CEEEEECHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEeecCCCCC---------CC--eeeeEECHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 34567778999876533221 11 235667888877777777777777777765 8999999888876653
No 42
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=40.73 E-value=1.1e+02 Score=24.58 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=44.5
Q ss_pred HHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy12151 417 IMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHH 494 (528)
Q Consensus 417 L~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~ 494 (528)
++..|.++||+...... .+.. ...+.+++.|..-..++...+......+.. ++++++++...+.+.
T Consensus 72 ~l~~L~~~glv~r~~~~---------~d~R--~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~l~ 137 (140)
T 2nnn_A 72 VVERLDKRGLIQRSADP---------DDGR--RLLVSLSPAGRAELEAGLAAAREINRQALA-PLSLQEQETLRGLLA 137 (140)
T ss_dssp HHHHHHHTTCEEEEEET---------TEEE--EEEEEECHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEeeCCC---------CCCC--eeeeEECHhHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Confidence 44567778998753221 1111 234567887866677777777777777765 899999998887765
No 43
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=40.43 E-value=65 Score=27.43 Aligned_cols=68 Identities=16% Similarity=0.089 Sum_probs=45.5
Q ss_pred hHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 416 SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 416 sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
++...|.++||+....... +.. .+.+.+++.|.+-+.++...+...+..+.. ++++++++.....+..
T Consensus 87 ~~l~~Le~~GlV~r~~~~~---------DrR--~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~L~~ 154 (166)
T 3deu_A 87 RTLDQLEDKGLISRQTCAS---------DRR--AKRIKLTEKAEPLIAEMEEVIHKTRGEILA-GISSEEIELLIKLIAK 154 (166)
T ss_dssp HHHHHHHHTTSEEEC-------------------CEEEECGGGHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEeeCCCC---------CCC--eeEEEECHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence 3456777899987543221 111 235567888877778888877777787776 8999999888876653
No 44
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=40.19 E-value=70 Score=26.92 Aligned_cols=70 Identities=19% Similarity=0.136 Sum_probs=47.8
Q ss_pred hHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 416 SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 416 sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
++...|.++||+........ .- ...+.+++.|.+-+.++...+...+..+.. ++++++++...+.+..
T Consensus 79 ~~l~~Le~~Glv~r~~~~~D---------rR--~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~L~~ 146 (162)
T 3k0l_A 79 KILQDLLANGWIEKAPDPTH---------GR--RILVTVTPSGLDKLNQCNQVVQQLEAQMLQ-GVDINLAFLIRNNLEL 146 (162)
T ss_dssp HHHHHHHHTTSEEEEECCSS---------SC--CEEEEECHHHHHHHHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCeEecCCCCc---------CC--eeEeEECHhHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 35567778999876543221 11 134567888877777777777777777765 8999999888877764
Q ss_pred cc
Q psy12151 496 GF 497 (528)
Q Consensus 496 ~f 497 (528)
-.
T Consensus 147 l~ 148 (162)
T 3k0l_A 147 MV 148 (162)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 45
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=39.08 E-value=78 Score=26.43 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=46.7
Q ss_pred hHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 416 SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 416 sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
++...|.++||+....... +.. ...+.+++.|.+-..++...+...+..+.. ++++++++...+.+..
T Consensus 83 ~~l~~Le~~Glv~r~~~~~---------DrR--~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~l~~ 150 (159)
T 3s2w_A 83 RAIQKLVDEGYVFRQRDEK---------DRR--SYRVFLTEKGKKLEPDMKKIASEWGEILFS-SFDDRQRREITNSLEI 150 (159)
T ss_dssp HHHHHHHHTTSEEEEECC------------C--CEEEEECHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEecCCC---------CCC--eeEEEECHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 4556777899987643221 111 234567888877778877888887777765 8999999888776653
No 46
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=37.60 E-value=1.3e+02 Score=24.08 Aligned_cols=67 Identities=10% Similarity=0.054 Sum_probs=45.4
Q ss_pred HHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 417 IMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 417 L~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
++..|.++||+....... +. -...+.+++.|..-..++...+...+..+.. ++++++++...+.+..
T Consensus 63 ~l~~L~~~glv~~~~~~~---------d~--R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~l~~ 129 (138)
T 3bpv_A 63 TLRRLEESGFIEREQDPE---------NR--RRYILEVTRRGEEIIPLILKVEERWEDLLFR-DFTEDERKLFRKMCRR 129 (138)
T ss_dssp HHHHHHHTTSEEEEEETT---------EE--EEEEEEECHHHHHTHHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEeecCCC---------Cc--eeEEeeECHhHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 445677789987543221 11 1234567888877777777777777777765 8999999888876653
No 47
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=36.35 E-value=94 Score=25.07 Aligned_cols=68 Identities=12% Similarity=0.050 Sum_probs=45.4
Q ss_pred hHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 416 SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 416 sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
+++..|.++||+........ ... ..+.+++.|.+-...+...+......+.. ++++++++...+.+..
T Consensus 69 ~~l~~Le~~Gli~r~~~~~d---------~R~--~~i~lT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~l~~ 136 (141)
T 3bro_A 69 VLLQRMEIKKLLYRKVSGKD---------SRQ--KCLKLTKKANKLETIILSYMDSDQSQMTS-GLNKEEVVFLEKILKR 136 (141)
T ss_dssp HHHHHHHHTTSEEEEECSSC---------TTS--EEEEECHHHHTTHHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEeeCCCcC---------CCe--eeeEECHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 34567778999876432211 111 24557888877777777777777777665 8999999888877653
No 48
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=34.59 E-value=64 Score=27.10 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=47.2
Q ss_pred hHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 416 SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 416 sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
++...|.++||+........ .+ ...+.+++.|.+-..++...+...+..+.. ++++++++.....+..
T Consensus 86 ~~l~~Le~~Glv~r~~~~~D------rR-----~~~~~LT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~L~~ 153 (161)
T 3e6m_A 86 RTVDQLVDEGLAARSISDAD------QR-----KRTVVLTRKGKKKLAEISPLINDFHAELVG-NVDPDKLQTCIEVLGE 153 (161)
T ss_dssp HHHHHHHHTTSEEECC---C------CC-----SCEEEECHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEeeCCccc------CC-----eeEeeECHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 34567778999865432211 11 134567888877788888888888888776 8999999988877664
Q ss_pred c
Q psy12151 496 G 496 (528)
Q Consensus 496 ~ 496 (528)
-
T Consensus 154 l 154 (161)
T 3e6m_A 154 I 154 (161)
T ss_dssp H
T ss_pred H
Confidence 3
No 49
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=34.19 E-value=1e+02 Score=25.05 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=45.5
Q ss_pred hHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 416 SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 416 sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
++...|.++||+........ .+ ...+.+++.|.+-..++...+...+..+.. ++++++++.....+..
T Consensus 70 ~~l~~L~~~Glv~r~~~~~D------~R-----~~~~~LT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~L~~ 137 (143)
T 3oop_A 70 RIVDVLLRKELIVREISTED------RR-----ISLLSLTDKGRKETTELRDIVEASCEKMFA-GVTRTDLEQFTAILKN 137 (143)
T ss_dssp HHHHHHHHTTSEEEEC----------CC-----SCEEEECHHHHHHHHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeeccCCCcc------Cc-----eeeeeECHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence 34567778999875432211 11 124567888877777777777777777765 8999999888877653
No 50
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=34.06 E-value=1.1e+02 Score=24.41 Aligned_cols=67 Identities=9% Similarity=0.034 Sum_probs=44.0
Q ss_pred HHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 417 IMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 417 L~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
++..|.++||+....... +... ..+.+++.|.+-..++...+...+..+.. ++++++++...+.+..
T Consensus 67 ~l~~L~~~gli~r~~~~~---------d~r~--~~~~lT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~l~~ 133 (139)
T 3bja_A 67 MIQRMKRDGYVMTEKNPN---------DQRE--TLVYLTKKGEETKKQVDVQYSDFLKENCG-CFTKEEEGILEDLLLK 133 (139)
T ss_dssp HHHHHHHTTSEEEEECSS---------CTTC--EEEEECHHHHHHHHHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCeeeccCCC---------CCce--eEEEECHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 446677789987543221 1111 23457887766667777777777777765 8999999888876653
No 51
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=33.55 E-value=81 Score=20.05 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy12151 466 MDIIFQYLRLLSQSPISSEMYAEISNI 492 (528)
Q Consensus 466 ~~~i~~~l~~L~~~git~~el~~ak~~ 492 (528)
+.++..++..|++.|++.+++......
T Consensus 2 laalkselqalkkegfspeelaalese 28 (48)
T 1g6u_A 2 LAALKSELQALKKEGFSPEELAALESE 28 (48)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 356777889999999999998766543
No 52
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=32.67 E-value=62 Score=26.74 Aligned_cols=69 Identities=7% Similarity=-0.027 Sum_probs=44.8
Q ss_pred hHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 416 SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 416 sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
++...|.++||+....... +.. .+.+.+++.|.+-+.++...+...+..+.. ++++++++.....+..
T Consensus 73 ~~l~~Le~~Glv~r~~~~~---------D~R--~~~~~LT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~L~~ 140 (150)
T 3fm5_A 73 GLVDELEERGLVVRTLDPS---------DRR--NKLIAATEEGRRLRDDAKARVDAAHGRYFE-GIPDTVVNQMRDTLQS 140 (150)
T ss_dssp HHHHHHHTTTSEEC----------------------CEECHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEeeCCcc---------ccc--hheeeECHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 3445677789986543221 111 235667888877777877777777777775 8999999999887765
Q ss_pred c
Q psy12151 496 G 496 (528)
Q Consensus 496 ~ 496 (528)
-
T Consensus 141 l 141 (150)
T 3fm5_A 141 I 141 (150)
T ss_dssp H
T ss_pred H
Confidence 4
No 53
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=32.57 E-value=1e+02 Score=26.80 Aligned_cols=70 Identities=13% Similarity=0.121 Sum_probs=48.2
Q ss_pred hHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 416 SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 416 sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
++...|.++||+........ .. ...+.+|+.|.+-+.++...+...+..+.. ++++++++.....+..
T Consensus 76 ~~l~~Le~~GlV~r~~~~~D---------rR--~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~-~l~~ee~~~l~~~L~~ 143 (189)
T 3nqo_A 76 RLVANLEKNGYVDVIPSPHD---------KR--AINVKVTDLGKKVMVTCSRTGINFMADVFH-EFTKDELETLWSLLKK 143 (189)
T ss_dssp HHHHHHHHTTSEEEEECSSC---------SS--CEEEEECHHHHHHHHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEeccCCCC---------CC--eeEEEECHHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHH
Confidence 34567778999876543221 11 134567888877777777777777777764 8999999888877764
Q ss_pred cc
Q psy12151 496 GF 497 (528)
Q Consensus 496 ~f 497 (528)
-.
T Consensus 144 l~ 145 (189)
T 3nqo_A 144 MY 145 (189)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 54
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=32.06 E-value=1.2e+02 Score=25.14 Aligned_cols=68 Identities=18% Similarity=0.179 Sum_probs=45.1
Q ss_pred hHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 416 SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 416 sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
++++.|.++||+....... +... ..+.+++.|..-+.++...+...+..+.. ++++++++...+.+..
T Consensus 77 ~~l~~Le~~Gli~r~~~~~---------d~R~--~~~~lT~~G~~~~~~~~~~~~~~~~~~~~-~l~~ee~~~l~~~L~~ 144 (154)
T 2eth_A 77 NVVDSLEKRGLVVREMDPV---------DRRT--YRVVLTEKGKEIFGEILSNFESLLKSVLE-KFSEEDFKVVSEGFNR 144 (154)
T ss_dssp HHHHHHHHTTSEEEEECTT---------TSSC--EEEEECHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEeeCCCC---------Ccce--eEEEECHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 3456777889987643221 1111 23557887766777777777777777775 8999999888876654
No 55
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=31.75 E-value=1.2e+02 Score=24.54 Aligned_cols=68 Identities=10% Similarity=0.010 Sum_probs=44.4
Q ss_pred HHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q psy12151 417 IMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIG 496 (528)
Q Consensus 417 L~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~ 496 (528)
++..|.++||+....... +... ..+.+++.|..-..++...+...+..+.. ++++++++...+.+..-
T Consensus 63 ~l~~Le~~gli~r~~~~~---------d~R~--~~~~lT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~l~~l 130 (144)
T 1lj9_A 63 AIKRLEEQGFIYRQEDAS---------NKKI--KRIYATEKGKNVYPIIVRENQHSNQVALQ-GLSEVEISQLADYLVRM 130 (144)
T ss_dssp HHHHHHHTTSEEEEECSS---------CTTC--EEEEECHHHHHHHHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEeecCCC---------CCce--eeeEEChhHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence 446677789987643221 1111 23567887766666666666666666665 89999998888776643
No 56
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=31.53 E-value=72 Score=26.02 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=41.9
Q ss_pred hHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 416 SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 416 sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
++...|.++||+....... +.. ...+.++++|.+-..++...+......+ ++++++++...+.+..
T Consensus 69 ~~l~~L~~~Glv~r~~~~~---------D~R--~~~~~LT~~G~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~L~~ 134 (140)
T 3hsr_A 69 PLLKKLEKKDYVVRTREEK---------DER--NLQISLTEQGKAIKSPLAEISVKVFNEF---NISEREASDIINNLRN 134 (140)
T ss_dssp HHHHHHHHTTSEEEEC------------------CEEEECHHHHHTHHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEecCCCC---------Ccc--eeeeeEChHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHH
Confidence 3556777899987543221 111 2345678888777777666666655554 8999999988877653
No 57
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=31.31 E-value=68 Score=26.18 Aligned_cols=68 Identities=16% Similarity=0.089 Sum_probs=44.0
Q ss_pred hHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 416 SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 416 sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
++...|.++||+....... +.. ...+.+++.|.+-..++...+...+..+.. ++++++++.....+..
T Consensus 70 ~~l~~L~~~Glv~r~~~~~---------DrR--~~~~~LT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~l~~ 137 (142)
T 3ech_A 70 RKIRELEGRNLVRRERNPS---------DQR--SFQLFLTDEGLAIHLHAELIMSRVHDELFA-PLTPVEQATLVHLLDQ 137 (142)
T ss_dssp HHHHHHHHTTSEEC---------------------CCEECHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEeeccCCC---------CCC--eeeeEECHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 3456777899987543221 111 234567888877777777777777777765 8999999988877653
No 58
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=30.81 E-value=1.1e+02 Score=24.63 Aligned_cols=67 Identities=12% Similarity=0.162 Sum_probs=44.4
Q ss_pred HHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 417 IMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 417 L~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
+++.|.++||+...... .+.. ...+.+++.|.+-..++...+...+..+.. ++++++++...+.+..
T Consensus 70 ~l~~Le~~glv~r~~~~---------~d~R--~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~l~~ 136 (142)
T 2fbi_A 70 VLARLERDGIVRRWKAP---------KDQR--RVYVNLTEKGQQCFVSMSGDMEKNYQRIQE-RFGEEKLAQLLELLNE 136 (142)
T ss_dssp HHHHHHHTTSEEEEEET---------TEEE--EEEEEECHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEeecCC---------CCCC--eeEEEECHHHHHHHHHHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHH
Confidence 44677788998654321 1111 234567887866667777777777777665 7899998888876654
No 59
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=30.48 E-value=1.1e+02 Score=24.88 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=43.9
Q ss_pred HHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 417 IMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 417 L~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
++..|.++||+....... +.. ...+.+++.|.+-+.++...+...+..+.. ++++++++...+.+..
T Consensus 76 ~l~~Le~~Glv~r~~~~~---------d~R--~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~l~~ 142 (150)
T 2rdp_A 76 LVDRMERNGLVARVRDEH---------DRR--VVRIRLLEKGERIIEEVIEKRQRDLANVLE-SFSDEEIVVFERCLRK 142 (150)
T ss_dssp HHHHHHHTTSEEEEECCC--------------CEEEEECHHHHHHHHHHHHHHHHHHHHHGG-GSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCeeecCCCC---------Ccc--eeEeEECHhHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 445677789987543221 111 124567888877777777777777777665 7999999888776654
No 60
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=29.80 E-value=89 Score=25.97 Aligned_cols=70 Identities=16% Similarity=0.126 Sum_probs=45.4
Q ss_pred hHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 416 SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 416 sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
+++..|.++||+....... +.. .+.+.+++.|.+-..++...+...+..+.. ++++++++...+.+..
T Consensus 81 ~~l~~Le~~Gli~r~~~~~---------d~R--~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~l~~ 148 (160)
T 3boq_A 81 GLVNRLIKDGMVVKAMSAD---------DRR--SFSAKLTDAGLTTFKQASEAHNRILAELLR-AVSDQDMVEASAALRG 148 (160)
T ss_dssp HHHHHHHHHTSEEEC-------------------CEEEECHHHHHHHHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEeecCCC---------CCC--eEEEEEChhHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 4556777889986542211 111 234567888877777777777777777765 7999999888877765
Q ss_pred cc
Q psy12151 496 GF 497 (528)
Q Consensus 496 ~f 497 (528)
-.
T Consensus 149 l~ 150 (160)
T 3boq_A 149 IL 150 (160)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 61
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=28.79 E-value=1.4e+02 Score=24.11 Aligned_cols=67 Identities=10% Similarity=0.107 Sum_probs=43.7
Q ss_pred HHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 417 IMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 417 L~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
++..|.++||+....... +... ..+.+++.|..-+..+...+...+..+.. ++++++++...+.+..
T Consensus 70 ~l~~Le~~glv~r~~~~~---------d~r~--~~~~lT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~l~~ 136 (146)
T 2gxg_A 70 SVDKLEEMGLVVRVRDRE---------DRRK--ILIEITEKGLETFNKGIEIYKKLANEVTG-DLSEDEVILVLDKISK 136 (146)
T ss_dssp HHHHHHHTTSEEEEECSS---------CTTC--EEEEECHHHHHHHHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEeecCCC---------CCce--EEEEECHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 445677789987543221 1111 23557887766667777777777777664 8999999888776654
No 62
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=28.77 E-value=1.3e+02 Score=24.99 Aligned_cols=69 Identities=12% Similarity=-0.033 Sum_probs=44.4
Q ss_pred hHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 416 SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 416 sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
++++.|.++||+........ .+ ...+.+++.|..-..++...+...+..+.. ++++++++...+.+..
T Consensus 85 ~~l~~Le~~Gli~r~~~~~d------~R-----~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~l~~ 152 (162)
T 3cjn_A 85 RALDGLQADGLVRREVDSDD------QR-----SSRVYLTPAGRAVYDRLWPHMRASHDRMFQ-GITPQERQAFLATLNK 152 (162)
T ss_dssp HHHHHHHHTTSEEEEEC--C------CS-----SEEEEECHHHHHHHHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEecCCCCC------CC-----eeEEEECHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 34567778899876432211 01 134567887766667776777677777664 8999999888876654
Q ss_pred c
Q psy12151 496 G 496 (528)
Q Consensus 496 ~ 496 (528)
-
T Consensus 153 l 153 (162)
T 3cjn_A 153 M 153 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 63
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=27.93 E-value=1.4e+02 Score=24.39 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=44.6
Q ss_pred HHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q psy12151 417 IMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIG 496 (528)
Q Consensus 417 L~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~~ 496 (528)
++..|.++||+........ .+. ..+.+++.|..-..++...+...+..+.. ++++++++...+.+..-
T Consensus 71 ~l~~Le~~glv~r~~~~~d------~R~-----~~~~lT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~l~~l 138 (155)
T 1s3j_A 71 MADRLEQKNLIARTHNTKD------RRV-----IDLSLTDEGDIKFEEVLAGRKAIMARYLS-FLTEEEMLQAAHITAKL 138 (155)
T ss_dssp HHHHHHHTTSEEEEECSSC------TTS-----EEEEECHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEeecCCCCC------Cce-----EEEEECHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence 4456777899876432211 111 23456777766677777777777777765 89999998887766543
No 64
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=27.14 E-value=1.1e+02 Score=25.89 Aligned_cols=71 Identities=13% Similarity=0.181 Sum_probs=48.4
Q ss_pred hHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 416 SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 416 sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
++...|.++||+....... +.- .+.+.+++.|.+-+.++...+...+..+.. ++++++++.....+..
T Consensus 81 ~~l~~Le~~Glv~r~~~~~---------DrR--~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~L~~ 148 (168)
T 3u2r_A 81 RLIDRLDDRGLVLRTRKPE---------NRR--VVEVALTDAGLKLLKDLEEPVRQCHERQLG-HLAADELHELIRLMEL 148 (168)
T ss_dssp HHHHHHHHTTSEEEEEETT---------EEE--EEEEEECHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEeecCCCC---------CCC--eeEeEECHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 3456777899987643221 111 245678888877777777777777777766 7999999999888775
Q ss_pred ccc
Q psy12151 496 GFN 498 (528)
Q Consensus 496 ~f~ 498 (528)
-..
T Consensus 149 l~~ 151 (168)
T 3u2r_A 149 ART 151 (168)
T ss_dssp C--
T ss_pred HHH
Confidence 543
No 65
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=26.72 E-value=1.9e+02 Score=23.22 Aligned_cols=67 Identities=13% Similarity=-0.014 Sum_probs=43.6
Q ss_pred HHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 417 IMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 417 L~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
++..|.++||+....... +... ..+.+++.|..-+.++...+...+..+.. ++++++++...+.+..
T Consensus 72 ~l~~L~~~glv~r~~~~~---------d~R~--~~~~lT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~l~~ 138 (146)
T 2fbh_A 72 LLDGLESQGLVRRLAVAE---------DRRA--KHIVLTPKADVLIADIEAIAASVRNDVLT-GIDESEQALCQQVLLR 138 (146)
T ss_dssp HHHHHHHTTSEEEECCBT---------TBCS--CEEEECTTHHHHHHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCeeecCCCc---------ccCe--eeeEECHhHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence 445677789987543211 1111 23557887876677776666677777664 8999999888876653
No 66
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=25.90 E-value=1.5e+02 Score=23.91 Aligned_cols=67 Identities=9% Similarity=0.094 Sum_probs=43.6
Q ss_pred HHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 417 IMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 417 L~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
++..|.++||+....... +. -...+.+++.|..-..++...+...+..+.. ++++++++...+.+..
T Consensus 67 ~l~~L~~~glv~r~~~~~---------d~--r~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~l~~ 133 (145)
T 2a61_A 67 LVKRLEADGYLTRTPDPA---------DR--RAYFLVITRKGEEVIEKVIERRENFIEKITS-DLGKEKSSKILDYLKE 133 (145)
T ss_dssp HHHHHHHTTSEEEEEETT---------EE--EEEEEEECHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCeeecCCCC---------CC--ceEEEEECHHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHH
Confidence 445677789987543211 11 1234667887766667777777777777665 7888888888776653
No 67
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=25.67 E-value=2.1e+02 Score=22.49 Aligned_cols=66 Identities=14% Similarity=0.135 Sum_probs=38.2
Q ss_pred hHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHH--------HHHHH-cCCCCHHHH
Q psy12151 416 SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQY--------LRLLS-QSPISSEMY 486 (528)
Q Consensus 416 sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~--------l~~L~-~~git~~el 486 (528)
+++..|.++||+..... . + -.+++.+++.|..-..++...+... +..+. ..+++++++
T Consensus 47 ~~l~~L~~~Glv~r~~~--~-------r----r~~~~~lT~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~ 113 (123)
T 1okr_A 47 TLITRLYKKGFIDRKKD--N-------K----IFQYYSLVEESDIKYKTSKNFINKVYKGGFNSLVLNFVEKEDLSQDEI 113 (123)
T ss_dssp HHHHHHHHHTSEEEEEE--T-------T----EEEEEESSCHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHCCCeEEEec--C-------C----eEEEEEecCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCHHHH
Confidence 34566778899876532 1 1 1345677876643333333333332 22333 258999999
Q ss_pred HHHHHHHH
Q psy12151 487 AEISNIHH 494 (528)
Q Consensus 487 ~~ak~~~~ 494 (528)
+...+.+.
T Consensus 114 ~~l~~~L~ 121 (123)
T 1okr_A 114 EELRNILN 121 (123)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99887765
No 68
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=25.55 E-value=99 Score=24.87 Aligned_cols=67 Identities=12% Similarity=0.068 Sum_probs=42.3
Q ss_pred HHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 417 IMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIF-QYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 417 L~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~-~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
+.+.|.++||+....... +... ..+.+++.|.+-..++...+. .....+.. ++++++++...+.+..
T Consensus 68 ~l~~L~~~gli~r~~~~~---------d~R~--~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~l~~ 135 (138)
T 1jgs_A 68 MLDRLVCKGWVERLPNPN---------DKRG--VLVKLTTGGAAICEQCHQLVGQDLHQELTK-NLTADEVATLEYLLKK 135 (138)
T ss_dssp HHHHHHHTTSEEEEECTT---------CSSC--EEEEECHHHHHHHHHHHHHHHHHHHHHHHT-TTTTTCHHHHHHHHHT
T ss_pred HHHHHHHCCCEEecCCcc---------cCce--eEeEEChhHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 446777889987643221 1111 245678877666666666666 55556654 7888888888776653
No 69
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=25.51 E-value=15 Score=36.16 Aligned_cols=7 Identities=43% Similarity=0.600 Sum_probs=3.6
Q ss_pred chhhhhh
Q psy12151 14 RTKWRHY 20 (528)
Q Consensus 14 ~~~~~~~ 20 (528)
|-+.||-
T Consensus 214 RIkpRH~ 220 (335)
T 4fp9_B 214 KIKQRHI 220 (335)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555553
No 70
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=25.19 E-value=64 Score=26.56 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=44.2
Q ss_pred hHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 416 SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 416 sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
++...|.++||+........ .- ...+.+++.|.+-..++...+......+.. ++++++++.....+..
T Consensus 76 ~~l~~L~~~Glv~r~~~~~D---------rR--~~~~~LT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~L~~ 143 (148)
T 3jw4_A 76 SMLQGLEKKGYIERRIPENN---------AR--QKNIYVLPKGAALVEEFNNIFLEVEESITK-GLTKDEQKQLMSILIK 143 (148)
T ss_dssp HHHHHHHHTTSBCCC-------------------CCCCBCHHHHHHHHHHHHHHHHHHHHTTT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEeeCCCCC---------ch--hheeeECHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 45567778999876432211 11 234567888877777777777777777665 8999999888877653
No 71
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=25.09 E-value=1.3e+02 Score=24.65 Aligned_cols=69 Identities=19% Similarity=0.073 Sum_probs=45.3
Q ss_pred hHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 416 SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 416 sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
+++..|.++||+........ .+. ..+.+++.|..-..++...+...+..+.. ++++++++.....+..
T Consensus 73 ~~l~~Le~~Glv~r~~~~~d------~R~-----~~~~lT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~l~~ 140 (152)
T 3bj6_A 73 RILQEVQRAGLIERRTNPEH------ARS-----HRYWLTPRGEAIITAIRADEMAKLALFSE-GFSSVELTAYHKVQLA 140 (152)
T ss_dssp HHHHHHHHTTSEEEECCSSS------TTS-----CEEEECHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeeecCCccc------ccc-----eeeEEChhhHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 34567778899876432211 111 23456787776777777777777777765 8999999888877664
Q ss_pred c
Q psy12151 496 G 496 (528)
Q Consensus 496 ~ 496 (528)
-
T Consensus 141 l 141 (152)
T 3bj6_A 141 L 141 (152)
T ss_dssp H
T ss_pred H
Confidence 3
No 72
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=21.73 E-value=1.6e+02 Score=23.83 Aligned_cols=80 Identities=10% Similarity=-0.033 Sum_probs=46.9
Q ss_pred HHHHHHHHhCCCCC---hHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHH---HHHHHHHHH
Q psy12151 402 LDVLSWFIGHEGPG---SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIM---DIIFQYLRL 475 (528)
Q Consensus 402 l~vl~~iLg~~~~~---sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~---~~i~~~l~~ 475 (528)
..-|+..+|- ..+ ++...|.++||+....... +.. ...+.+++.|..-...+. .........
T Consensus 54 ~~eLa~~l~~-s~~tvs~~l~~L~~~Glv~r~~~~~---------d~R--~~~~~lT~~g~~~~~~~~~~~~~~~~~~~~ 121 (146)
T 3tgn_A 54 NSELARRLNV-SQAAVTKAIKSLVKEGMLETSKDSK---------DAR--VIFYQLTDLARPIAEEHHHHHEHTLLTYEQ 121 (146)
T ss_dssp HHHHHHHHTC-CHHHHHHHHHHHHHTTSEEC---------------------CCEECGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHCCCeEeccCCC---------CCc--eeEEEECHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555552 222 3456677899986532211 111 234567888876666666 666666666
Q ss_pred HHcCCCCHHHHHHHHHHHH
Q psy12151 476 LSQSPISSEMYAEISNIHH 494 (528)
Q Consensus 476 L~~~git~~el~~ak~~~~ 494 (528)
+.. ++++++++...+.+.
T Consensus 122 ~~~-~l~~~e~~~l~~~l~ 139 (146)
T 3tgn_A 122 VAT-QFTPNEQKVIQRFLT 139 (146)
T ss_dssp HHT-TSCHHHHHHHHHHHH
T ss_pred HHH-hCCHHHHHHHHHHHH
Confidence 665 899999988887665
No 73
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=21.43 E-value=86 Score=25.59 Aligned_cols=67 Identities=10% Similarity=0.020 Sum_probs=41.7
Q ss_pred HHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy12151 417 IMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHH 494 (528)
Q Consensus 417 L~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~ 494 (528)
+...|.++||+....... +.. ...+.+++.|..-+.++...+...+..+...++++++++...+.+.
T Consensus 70 ~l~~Le~~glv~r~~~~~---------d~R--~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~ 136 (147)
T 2hr3_A 70 LLRELERGGLIVRHADPQ---------DGR--RTRVSLSSEGRRNLYGNRAKREEWLVRAMHACLDESERALLAAAGP 136 (147)
T ss_dssp HHHHHHHTTSEEEEC-----------------CCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEeeCCCCC---------CCC--ceeeEECHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 445677789986542211 111 1234578888666777777777777666544789999888887554
No 74
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=20.99 E-value=1e+02 Score=25.35 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=43.7
Q ss_pred hHHHHHHHccccceeE--eeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy12151 416 SIMSYLRKKFLAIEIE--AGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIH 493 (528)
Q Consensus 416 sL~~~LRe~glaysv~--a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~ 493 (528)
++...|.++||+.... ... +.. ...+.+++.|.+-..++...+...+..+.. ++++++++...+.+
T Consensus 70 ~~l~~Le~~Glv~r~~~~~~~---------D~R--~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~l 137 (151)
T 3kp7_A 70 RRVKKLLNAELVKLEKPDSNT---------DQR--LKIIKLSNKGKKYIKERKAIMSHIASDMTS-DFDSKEIEKVRQVL 137 (151)
T ss_dssp HHHHHHHHTTSEEC----------------------CCBEECHHHHHHHHHHHHHHHHHHHHTTT-TSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEeeCCCCCC---------CCC--eeEEEECHhHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Confidence 3456777899987521 111 111 234567888877777777777777777765 79999998888776
Q ss_pred Hh
Q psy12151 494 HI 495 (528)
Q Consensus 494 ~~ 495 (528)
..
T Consensus 138 ~~ 139 (151)
T 3kp7_A 138 EI 139 (151)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 75
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=20.18 E-value=1.1e+02 Score=24.92 Aligned_cols=68 Identities=9% Similarity=-0.010 Sum_probs=44.8
Q ss_pred hHHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 416 SIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 416 sL~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
++...|.++||+........ .+. ..+.+++.|.+-..++...+...+..+.. ++++++++.....+..
T Consensus 64 ~~l~~Le~~Glv~r~~~~~D------~R~-----~~~~LT~~G~~~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~l~~ 131 (145)
T 3g3z_A 64 GVCKTLAGQGLIEWQEGEQD------RRK-----RLLSLTETGKAYAAPLTESAQEFSDKVFA-TFGDKRTTRLFADLDA 131 (145)
T ss_dssp HHHHHHHHTTSEEECCCSSC------GGG-----SCEEECHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEeeccCCCC------Cce-----eeeeEChhHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHHH
Confidence 34567778999875322111 111 23567888877777777777777777765 6899888888776653
No 76
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=20.08 E-value=1.7e+02 Score=23.56 Aligned_cols=65 Identities=9% Similarity=0.023 Sum_probs=40.5
Q ss_pred HHHHHHHccccceeEeeeccccccccCcceEEEEEEEeccchhccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy12151 417 IMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHI 495 (528)
Q Consensus 417 L~~~LRe~glaysv~a~~~~~~~~~~~~~g~f~i~~~~~~~g~~~~~~v~~~i~~~l~~L~~~git~~el~~ak~~~~~ 495 (528)
++..|.++||+....... +... ..+.+++.|..-..++...+......+ ++++++++...+.+..
T Consensus 71 ~l~~L~~~gli~r~~~~~---------d~R~--~~~~lT~~G~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~l~~ 135 (142)
T 2bv6_A 71 LLKRMEQVDLIKRERSEV---------DQRE--VFIHLTDKSETIRPELSNASDKVASAS---SLSQDEVKELNRLLGK 135 (142)
T ss_dssp HHHHHHHTTSEEEEECSS---------STTC--EEEEECHHHHHHHHHHTTHHHHHHHHT---TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEeecCCC---------Ccce--EEEEEChHHHHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 446677789987543211 1111 245577777666666666555555554 8999999888876654
No 77
>3ov5_A VIRB7 (XAC2622), uncharacterized protein; type IV secretion system component, bacteri membrane, xanthomonas axonopodis PV citri; 1.04A {Xanthomonas axonopodis PV}
Probab=20.05 E-value=1.1e+02 Score=22.82 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=37.4
Q ss_pred CCCCCCCCCCChhhhcccccchHHHHHHHHHHHhhcCCCCcEEEEEcCC
Q psy12151 284 ENPAGKFVWGNLETLKNTVDENELYAALRNLQKTHYVANHMTLALQARL 332 (528)
Q Consensus 284 ~~p~~~~~~G~~e~L~~it~~~~i~e~L~~f~~~~y~~~~~~LvivGdi 332 (528)
++++.....|....|+... .++...=..+.|....+++.|.|+.
T Consensus 33 ~~~sDyTLy~~Vs~I~tt~-----~~~A~~eLs~~Y~aqgv~vsv~~n~ 76 (85)
T 3ov5_A 33 NLPSDYTLIGPVSAISTTS-----VQQAATELSAVYAAQGVSVSVSANK 76 (85)
T ss_dssp CSSSCCBCCGGGGGCEESC-----HHHHHHHHHHHHGGGTEEEEEETTE
T ss_pred cCccceeeehhhhhhhhhh-----HHHHHHHHHHHHHhCCeEEEEECCE
Confidence 5777777888889999888 8888888888999999999999863
Done!