RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12151
(528 letters)
>gnl|CDD|223956 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases,
insulinase-like [Posttranslational modification, protein
turnover, chaperones].
Length = 937
Score = 272 bits (697), Expect = 2e-81
Identities = 126/365 (34%), Positives = 193/365 (52%), Gaps = 11/365 (3%)
Query: 159 AALSLTIGVGSFCD-GHIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYE 217
++ +L + VGSF D PGLAHFLEHM+FMGSEKYP+E F FLS GGS NAST E
Sbjct: 46 SSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSHNASTAGE 105
Query: 218 TTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLL 277
T FYF+V L+ ++D F++FFI PL ++++ E + V+SEF ++ +D R+ Q+
Sbjct: 106 RTAFYFEVENDALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSDGWRMYQVQ 165
Query: 278 ATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQKTHYVANHMTLALQARLDLPTL 337
A +P KF GNLETL + + L+ + HY AN+M L + L L
Sbjct: 166 ALTANPGHPLSKFSTGNLETL-SDKPGLVVQQELKEFHEKHYSANNMKLVIYGNQPLDEL 224
Query: 338 EAWVVEHFSGIP--SNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQQ 395
+ F IP + + P V T + + + P L + +
Sbjct: 225 AKLAADLFGDIPNRARKIPPIPVPVVTDEQTGKIIH---IVPAKPRPRLRIYFPIDDNSA 281
Query: 396 LYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLT 455
+++KP + LS IG+E PGS++++L+K+ L E+ AG + Y +F I+ LT
Sbjct: 282 KFRSKPDEYLSHLIGNESPGSLLAWLKKQGLITELSAG----LDPISGNYGVFAISYELT 337
Query: 456 DQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLH 515
D+G+ ++ + FQYL LL + I + E+ N+ + F Y S +DYV L+ +
Sbjct: 338 DKGLAHYDRVIALTFQYLNLLREKGIPKYTFDELQNVLDLDFRYPSKTRPMDYVSWLADN 397
Query: 516 MQYFP 520
M+ P
Sbjct: 398 MEREP 402
Score = 28.9 bits (65), Expect = 8.2
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 74 DRYKYSVIQLKNGLTALLVSD 94
D KY I+L NGL ALLVSD
Sbjct: 20 DDRKYRAIKLPNGLRALLVSD 40
>gnl|CDD|185056 PRK15101, PRK15101, protease3; Provisional.
Length = 961
Score = 159 bits (404), Expect = 1e-41
Identities = 130/455 (28%), Positives = 201/455 (44%), Gaps = 79/455 (17%)
Query: 74 DRYKYSVIQLKNGLTALLVSDVENLITLDENVTADDKMSMEQESEESGNESGDETASSVD 133
D +Y I+L NG+T LLVSD
Sbjct: 40 DPRQYQAIRLDNGMTVLLVSD--------------------------------------- 60
Query: 134 SQGMEVDEFEEADRSKQEKKSDEKLAALSLTIGVGSFCDGHI-PGLAHFLEHMVFMGSEK 192
+A +S LAAL+L VGS D GLAH+LEHMV MGS+K
Sbjct: 61 ---------PQAVKS---------LAALALP--VGSLEDPDAQQGLAHYLEHMVLMGSKK 100
Query: 193 YPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIA 252
YP+ + FL GGS NAST T FY +V L ++D ++ PLL +
Sbjct: 101 YPQPDSLAEFLKKHGGSHNASTASYRTAFYLEVENDALPPAVDRLADAIAEPLLDPKNAD 160
Query: 253 SEMDIVDSEFQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALR 312
E + V++E + D R+ Q+ A +P +F GNLETL + ++L AL
Sbjct: 161 RERNAVNAELTMARSRDGMRMAQVSAETINPAHPGSRFSGGNLETLSDKPG-SKLQDALV 219
Query: 313 NLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNES--PKKTFSVETPFELDRWN 370
+ + +Y AN M + + LP L + F +P+ + P+ T V T +
Sbjct: 220 DFYQRYYSANLMKAVIYSNQPLPELAKLAADTFGRVPNKNASVPEITVPVVTDAQKGIII 279
Query: 371 RFYTVKPVDDVNVLYMTWYTPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEI 430
+ +P VL + + +++K + +S+ IG+ PG++ +L+K+ LA I
Sbjct: 280 HYVPAQP---RKVLRVEFRIDNNSAKFRSKTDEYISYLIGNRSPGTLSDWLQKQGLAEGI 336
Query: 431 EAGY-----HESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEM 485
AG SG +F I+V+LTD+G+ Q ++ IF YL LL + I
Sbjct: 337 SAGADPMVDRNSG--------VFAISVSLTDKGLAQRDQVVAAIFSYLNLLREKGIDKSY 388
Query: 486 YAEISNIHHIGFNYHSTKSSVDYVEELSLHMQYFP 520
+ E++++ + F Y S +DY+E L+ M P
Sbjct: 389 FDELAHVLDLDFRYPSITRDMDYIEWLADTMLRVP 423
>gnl|CDD|233732 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis probable
peptidase PqqF. In a subset of species that make
coenzyme PQQ (pyrrolo-quinoline-quinone), this probable
peptidase is found in the PQQ biosynthesis region and is
thought to act as a protease on PqqA (TIGR02107), a
probable peptide precursor of the coenzyme. PQQ is
required for some glucose dehydrogenases and alcohol
dehydrogenases [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 696
Score = 133 bits (336), Expect = 4e-33
Identities = 81/343 (23%), Positives = 146/343 (42%), Gaps = 22/343 (6%)
Query: 154 SDEKLAALSLTIGVGSF--CDGHIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSN 211
D K AA L + GS PGLAHFLEH++F+G E++ ++ ++ +GG N
Sbjct: 17 PDAKRAAALLRVAAGSHDEPSAW-PGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVN 75
Query: 212 ASTEYETTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTC 271
A+T TT F+F++P L + + PLL + E +++++E+ + +
Sbjct: 76 ATTLERTTAFFFELPAAALAAGLARLCDMLARPLLTAEDQQREREVLEAEYIAWQNDADT 135
Query: 272 RLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQKTHYVANHMTLALQAR 331
E L A +P +F G+ ++L + ALR+ + HY A +M L LQ
Sbjct: 136 LREAALLDALQAGHPLRRFHAGSRDSL--ALPNTAFQQALRDFHRRHYQAGNMQLWLQGP 193
Query: 332 LDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTP 391
L LE + + + + P L R++R + W
Sbjct: 194 QSLDELEQLAARFGASLAAGGECAQA----PPAPLLRFDRLTLAGGSEP-----RLWLLF 244
Query: 392 PVQQLYKT--KPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQ 449
+ L T + +L F+ E PG +++ LR++ LA + A + ++ L
Sbjct: 245 ALAGLPATARDNVTLLCEFLQDEAPGGLLAQLRERGLAESVAATWL---YQDAGQ-ALLA 300
Query: 450 INVTLTDQGVDQIQHIMDIIFQYLRLLSQS--PISSEMYAEIS 490
+ + Q I ++ Q+L L++ E YA+++
Sbjct: 301 LEFSARCISAAAAQQIEQLLTQWLGALAEQTWAEQLEHYAQLA 343
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function
prediction only].
Length = 438
Score = 117 bits (294), Expect = 2e-28
Identities = 70/376 (18%), Positives = 133/376 (35%), Gaps = 36/376 (9%)
Query: 158 LAALSLTIGVGS--FCDGHIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTE 215
+L + + GS G G+AHFLEHM F G+ P + GG NA T
Sbjct: 38 TVSLDVWVKAGSRAEPAG-KAGIAHFLEHMAFKGTTGLPS-AELAEAFEKLGGQLNAFTS 95
Query: 216 YETTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILN-DTCRLE 274
++ T +Y V +L K++D+ ++ ++P + + E ++ E + + D E
Sbjct: 96 FDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREKGVILEEIRMRQDDPDDLAFE 155
Query: 275 QLLATACTKENPAGKFVWGNLETLKN-TVDENELYAALRNLQKTHYVANHMTLALQARLD 333
+LL +P G+ + G E+++ T ++ L++ + Y ++M L + +D
Sbjct: 156 RLLEALY-GNHPLGRPILGTEESIEAITRED------LKDFYQKWYQPDNMVLVVVGDVD 208
Query: 334 LPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPV 393
+ + ++F +P P K + L W
Sbjct: 209 AEEVVELIEKYFGDLPGAAPPPKIPPEPPLGPERV-----VRVNDPEQPDLEQAWLALGY 263
Query: 394 QQLYKTKPLD----VLSWFIGHEGPGS-IMSYLR-KKFLAIEIEAGYHESGFEYNHLYTL 447
P D +L + G S + LR K+ LA + + +
Sbjct: 264 PGPDYDSPDDYAALLLLNGLLGGGFSSRLFQELREKRGLAYSVSSFSDFLS-DSGLFSIY 322
Query: 448 FQINVTLTDQGVDQIQHIMD-------IIFQY--LRLLSQSPISSEMYAEISNIH--HIG 496
++ + ++ I+ F L Q I + + S +
Sbjct: 323 AGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLDSPSSIAELL 382
Query: 497 FNYHSTKSSVDYVEEL 512
Y S+ +EEL
Sbjct: 383 GQYLLLGGSLITLEEL 398
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16).
Length = 149
Score = 103 bits (260), Expect = 3e-26
Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 15/138 (10%)
Query: 151 EKKSDEKLAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGS 209
E +A+ L I GS + GLAHFLEHM F G++KYP E D + L GGS
Sbjct: 5 EHDPPADTSAVGLWIDAGSRYEPDDNNGLAHFLEHMAFKGTKKYPSE-DLEEELEKLGGS 63
Query: 210 SNASTEYETTTFYFDVPEPHLKKSMDIFSNFFISPLLK-------RDSIASEMDIVDSEF 262
NA T E T +Y +V L K++D ++FF++PL R + E++ VD+E
Sbjct: 64 LNAYTSREHTVYYVEVLNDDLPKAVDRLADFFLNPLFSPSEVERERLVVLYEVEAVDAEP 123
Query: 263 QSSILNDTCRLEQLLATA 280
Q+ + L+ L A A
Sbjct: 124 QAVL------LDNLHAAA 135
>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain.
Peptidase M16 consists of two structurally related
domains. One is the active peptidase, whereas the other
is inactive. The two domains hold the substrate like a
clamp.
Length = 182
Score = 90.6 bits (225), Expect = 3e-21
Identities = 38/186 (20%), Positives = 70/186 (37%), Gaps = 9/186 (4%)
Query: 308 YAALRNLQKTHYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELD 367
L++ K HY ++M L + +DL L A ++F +P++ K E
Sbjct: 4 REDLKDFYKKHYSPDNMVLVVVGDVDLDELLALAEKYFGDLPASPPKPKPREPPLEPEEL 63
Query: 368 RWNRFYTVKPVDDVNVLYMTWYTPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLR-KKFL 426
L + + PP+ + LDVL+ +G + LR K+ L
Sbjct: 64 TGKEVVVPDKDVPQAKLALAFPGPPLGNDPDSAALDVLAELLGGGASSRLFQELREKEGL 123
Query: 427 AIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMY 486
A + A + LF I L + + ++++IF+ L+ L++ I+ E
Sbjct: 124 AYSVSAFFDSYS-----DTGLFGIYADLDP---ENLDEVIELIFEELKKLAEEGITEEEL 175
Query: 487 AEISNI 492
Sbjct: 176 ERAKAQ 181
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases,
insulinase-like [General function prediction only].
Length = 978
Score = 52.0 bits (125), Expect = 6e-07
Identities = 56/300 (18%), Positives = 97/300 (32%), Gaps = 57/300 (19%)
Query: 167 VGSFCDGHIP----GLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGS----SNASTEYET 218
V S P G+AH LEH V GS+KYP ++ F L S NA T +
Sbjct: 44 VFSIAFKTEPHDSTGVAHILEHTVLCGSKKYPVKDPFFKML---KRSLNTFLNAFTFPDK 100
Query: 219 TTFYFDVPEPH-LKKSMDIFSNFFISPLLKRDSIASE------MD--------IVDSEFQ 263
T + + ++ + PLL ++S E D +V +E +
Sbjct: 101 TVYPASSANEKDFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMK 160
Query: 264 SSILNDTCRLEQLLATACTKENPAGKFVWG----NLETLKNTVDENELYAALRNLQKTHY 319
+ + L + + + G N+ L Y R K HY
Sbjct: 161 GAYSSGESVLSRAMQQSLFPGT-TYGVNSGGDPKNIPDLT--------YEEFRAFHKKHY 211
Query: 320 VANHMTLALQARLD----LPTLEAWVVEHFSGIPSNES--PKKTFSVETPFELDRWNRFY 373
++ + + + L +E V+ F + +K F L Y
Sbjct: 212 HPSNCKIFVYGNIPTERLLDFIEEKVLRPFGKRELDVPIPDQKAFKKPRRKVL-----EY 266
Query: 374 TVKPV---DDVNVLYMTWYTPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEI 430
+ +D +L ++W + L+VL + S S L + + +
Sbjct: 267 PISFDEEDEDQGLLSLSWLGGSASDAEDSLALEVLEEIL----LDSAASPLTQALIESGL 322
>gnl|CDD|226196 COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related
enzymes [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 490
Score = 33.9 bits (78), Expect = 0.24
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 284 ENPAGKFVWGNL-ETLKNTVDENELYAALRNLQKTHYVANHMTLAL--QA----RLDLPT 336
EN AGK +WG L ET V + L+N T + + L + RLD T
Sbjct: 104 ENEAGKPLWGGLGETQPPGVRPHSRTGDLKNAANTSVIMHGDELLALWEGGSPYRLDPDT 163
Query: 337 LEAWVVEHFSGIP 349
LE E F G P
Sbjct: 164 LETLGKEDFGGDP 176
>gnl|CDD|240416 PTZ00432, PTZ00432, falcilysin; Provisional.
Length = 1119
Score = 33.6 bits (77), Expect = 0.35
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 177 GLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSS---NASTEYETTTFYF-DVPEPHLKK 232
G+ H LEH V GS+KY ++ F L +GG + NA T + T++ F E
Sbjct: 131 GIPHILEHSVLSGSKKYNYKDSF--SLLVQGGFNSFLNAYTFKDRTSYLFASTNEKDFYN 188
Query: 233 SMDIFSNFFISPLLKRDSIASEMDIVDSE 261
+ D++ + P +I + DI E
Sbjct: 189 TADVYMDSVFQP-----NILEDKDIFKQE 212
>gnl|CDD|220261 pfam09484, Cas_TM1802, CRISPR-associated protein TM1802
(cas_TM1802). Clusters of short DNA repeats with
non-homologous spacers, which are found at regular
intervals in the genomes of phylogenetically distinct
prokaryotic species, comprise a family with recognisable
features. This family is known as CRISPR (short for
Clustered, Regularly Interspaced Short Palindromic
Repeats). A number of protein families appear only in
association with these repeats and are designated Cas
(CRISPR-Associated) proteins. This minor cas protein is
found in at least five prokaryotic genomes:
Methanosarcina mazei, Sulfurihydrogenibium azorense,
Thermotoga maritima, Carboxydothermus hydrogenoformans,
and Dictyoglomus thermophilum, the first of which is
archaeal while the rest are bacterial.
Length = 584
Score = 33.1 bits (76), Expect = 0.40
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 3/89 (3%)
Query: 190 SEKYPEENDFD-AFLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDIFSNFFISPLLKR 248
E++ ++ + G +++ T +D E KK IF F+
Sbjct: 56 GEEFDKKTARKYLYKGQAGNGNSSQWYSPTNKITYDPEETLNKKLKSIFKKFYKDKGEIN 115
Query: 249 DSIASEMDIVD--SEFQSSILNDTCRLEQ 275
DI + I+ D L++
Sbjct: 116 KYRYFLKDIKKVLEKNFEKIIKDLIDLKK 144
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 32.1 bits (73), Expect = 0.62
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 103 ENVTADDKMSMEQESEESGNESGDETASSVDSQGMEVDEFEEADRSKQEKKSDE 156
+N DD E + + ESG + S DS +E E + E +D+
Sbjct: 223 DNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDA-SSEEMESGEMEAAEASADD 275
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 32.6 bits (74), Expect = 0.62
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 100 TLDENVTADDK-MSMEQESEESGNESGDETASSVDSQGMEVDEFE---EADRSKQEKKSD 155
+ DE DD+ EQE + G G E ++ +S+ + + E +S Q+ D
Sbjct: 209 SEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPD 268
Query: 156 E 156
E
Sbjct: 269 E 269
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase.
This family consists of various amine oxidases,
including maze polyamine oxidase (PAO) and various
flavin containing monoamine oxidases (MAO). The aligned
region includes the flavin binding site of these
enzymes. The family also contains phytoene
dehydrogenases and related enzymes. In vertebrates MAO
plays an important role regulating the intracellular
levels of amines via there oxidation; these include
various neurotransmitters, neurotoxins and trace amines.
In lower eukaryotes such as aspergillus and in bacteria
the main role of amine oxidases is to provide a source
of ammonium. PAOs in plants, bacteria and protozoa
oxidase spermidine and spermine to an aminobutyral,
diaminopropane and hydrogen peroxide and are involved in
the catabolism of polyamines. Other members of this
family include tryptophan 2-monooxygenase, putrescine
oxidase, corticosteroid binding proteins and
antibacterial glycoproteins.
Length = 444
Score = 31.0 bits (70), Expect = 1.8
Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 15/110 (13%)
Query: 327 ALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYM 386
L+ L LP L A E + K ETPF + + F + Y+
Sbjct: 260 VLKRILFLPPLPAAKQEAIRNLGFGSVSKVFLEFETPFWPENGDLFGLLVTDGLSRGGYV 319
Query: 387 TWYTPPVQQLYKTKPLDVLSWFIGHEGPGS-----------IMSYLRKKF 425
+P +LS+ +G ++ LRK
Sbjct: 320 LDTSPSSGSGRGV----LLSYVLGDAARELEDLSDEELLEAVLRDLRKLL 365
>gnl|CDD|216063 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus.
Members of this families are involved in Na+/K+, H+/K+,
Ca++ and Mg++ transport. This family represents 5
transmembrane helices.
Length = 175
Score = 28.7 bits (65), Expect = 5.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 389 YTPPVQQLYKTKPLDVLSWFI 409
Y P +Q ++ T PL + W I
Sbjct: 137 YVPGLQAVFGTTPLSLEQWLI 157
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 29.3 bits (66), Expect = 6.0
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 102 DENVTADDKMSMEQESEESGNESGDETASSVDSQGMEVDEFEEADRSKQEKKSD 155
D N DD+ ++E EE +E + D +EFEE D + + SD
Sbjct: 383 DANTERDDEEEEDEEEEEEEDEDEGPSKEHSDD-----EEFEEDDVESKYEDSD 431
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 29.2 bits (65), Expect = 6.9
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 100 TLDENVTADDKMSMEQESEESGNESGDETASSVDSQGMEVDEFEEADRSKQEKKSDEKL 158
TLDE++ DD + E +E NE G E + + E + + + E D+ +
Sbjct: 4042 TLDEDIQQDDFSDL-AEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAI 4099
>gnl|CDD|188570 TIGR04055, rSAM_NirJ2, putative heme d1 biosynthesis radical SAM
protein NirJ2. Members of this radical SAM protein
subfamily, designated NirJ2, occur in genomic contexts
with a paralog NirJ1 and with other nitrite reductase
operon genes associated with heme d1 biosynthesis, as in
Heliobacillus mobilis and Heliophilum fasciatum. NirJ2
is presumed by bioinformatics analysis (Xiong, et al.)
to be a heme d1 biosynthesis protein by context.
Length = 325
Score = 28.5 bits (64), Expect = 9.1
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 448 FQINVTLTDQGVDQIQHIMDI 468
FQI+ T+ D D+++ I D
Sbjct: 140 FQIHTTVMDWNRDEVEAITDF 160
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.383
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,512,106
Number of extensions: 2552141
Number of successful extensions: 2200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2169
Number of HSP's successfully gapped: 50
Length of query: 528
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 427
Effective length of database: 6,457,848
Effective search space: 2757501096
Effective search space used: 2757501096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.3 bits)