RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12151
(528 letters)
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading
enzyme, criptidase, kinins, hydrolase; 1.96A {Homo
sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A
3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A
2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Length = 990
Score = 344 bits (884), Expect = e-108
Identities = 119/376 (31%), Positives = 201/376 (53%), Gaps = 8/376 (2%)
Query: 155 DEKLAALSLTIGVGSFCD-GHIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNAS 213
++ +L + +GS D +I GL+HFL+HM+F+G++KYP+EN++ FLS GSSNA
Sbjct: 53 TTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAF 112
Query: 214 TEYETTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRL 273
T E T +YFDV HL+ ++D F+ FF+SPL + E++ VDSE + +++ND RL
Sbjct: 113 TSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRL 172
Query: 274 EQLLATACTKENPAGKFVWGNLETLKN--TVDENELYAALRNLQKTHYVANHMTLALQAR 331
QL ++P KF GN TL+ + ++ L +Y +N M + + R
Sbjct: 173 FQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGR 232
Query: 332 LDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTP 391
L L VV+ FS + + P F PF+ + + Y + P+ D+ LY+T+ P
Sbjct: 233 ESLDDLTNLVVKLFSEVENKNVPLPEFPEH-PFQEEHLKQLYKIVPIKDIRNLYVTFPIP 291
Query: 392 PVQQLYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQIN 451
+Q+ YK+ P L IGHEGPGS++S L+ K + G + F IN
Sbjct: 292 DLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKAGARG----FMFFIIN 347
Query: 452 VTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEE 511
V LT++G+ ++ I+ +FQY++ L ++ E+ +++ + F + + Y +
Sbjct: 348 VDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSK 407
Query: 512 LSLHMQYFPSQEYITG 527
++ + Y+P +E +T
Sbjct: 408 IAGILHYYPLEEVLTA 423
Score = 29.4 bits (65), Expect = 3.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 69 VKGLCDRYKYSVIQLKNGLTALLVSD 94
K D+ +Y ++L NG+ LL+SD
Sbjct: 26 TKSPEDKREYRGLELANGIKVLLISD 51
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP:
d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Length = 939
Score = 334 bits (856), Expect = e-104
Identities = 107/373 (28%), Positives = 174/373 (46%), Gaps = 6/373 (1%)
Query: 156 EKLAALSLTIGVGSFCD-GHIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNAST 214
+ +L + VGS D GLAH+LEHM MGS+KYP+ + +L GGS NAST
Sbjct: 40 AVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNAST 99
Query: 215 EYETTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLE 274
T FY +V L ++D ++ PLL + E + V++E + D R+
Sbjct: 100 APYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMA 159
Query: 275 QLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQKTHYVANHMTLALQARLDL 334
Q+ A +P KF GNLETL + N + AL++ + +Y AN M + + L
Sbjct: 160 QVSAETINPAHPGSKFSGGNLETLSDK-PGNPVQQALKDFHEKYYSANLMKAVIYSNKPL 218
Query: 335 PTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQ 394
P L + F +P+ ES K +V + P VL + +
Sbjct: 219 PELAKMAADTFGRVPNKESKKPEITVP-VVTDAQKGIIIHYVPALPRKVLRVEFRIDNNS 277
Query: 395 QLYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTL 454
+++K +++++ IG+ PG++ +L+K+ L I A N + I+ +L
Sbjct: 278 AKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIV---NGNSGVLAISASL 334
Query: 455 TDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSL 514
TD+G+ ++ IF YL LL + I + + E++N+ I F Y S +DYVE L+
Sbjct: 335 TDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLAD 394
Query: 515 HMQYFPSQEYITG 527
M P + +
Sbjct: 395 TMIRVPVEHTLDA 407
Score = 29.0 bits (64), Expect = 4.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 68 PVKGLCDRYKYSVIQLKNGLTALLVSD 94
K D +Y I+L NG+ LLVSD
Sbjct: 11 IRKSDKDNRQYQAIRLDNGMVVLLVSD 37
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A
{Sphingomonas} PDB: 3amj_C
Length = 445
Score = 136 bits (344), Expect = 3e-35
Identities = 65/343 (18%), Positives = 134/343 (39%), Gaps = 26/343 (7%)
Query: 158 LAALSLTIGVGSFCDGH-IPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEY 216
+ VGS + G+AH LEHM+F G++ +F ++ GG NA T
Sbjct: 28 TLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGP-GEFSKRVAAMGGRDNAFTTR 86
Query: 217 ETTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRL--E 274
+ T +Y VP L M + ++ + ++ + E+ ++ E + + E
Sbjct: 87 DYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYE 146
Query: 275 QLLATACTKENPAGKFVWGNLETLKN-TVDENELYAALRNLQKTHYVANHMTLALQARLD 333
L+A + +P V G + ++N T + +R+ K Y N+ T+ + ++
Sbjct: 147 ALMAAS-YVAHPYRVPVIGWMNDIQNMTAQD------VRDWYKRWYGPNNATVVVVGDVE 199
Query: 334 LPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPV 393
+ + + + E+P + E R R P ++ L + W+ P +
Sbjct: 200 HEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVR--RVTVKAPA-ELPYLALAWHVPAI 256
Query: 394 QQLYKTK---PLDVLSWFIGHEGPGSIM--SYLRKKFLAIEIEAGYHESGFEYNHLYTLF 448
L K++ L++L+ + G+ M +R A+ AGY LF
Sbjct: 257 VDLDKSRDAYALEILAAVLDG-YDGARMTRQLVRGNKHAVSAGAGYDSLSRGQ---QGLF 312
Query: 449 QINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISN 491
+ +GV I + + +R ++ ++ + + +
Sbjct: 313 ILEGVP-SKGVT-IAQLETDLRAQVRDIAAKGVTEAELSRVKS 353
>3go9_A Insulinase family protease; IDP00573, structural genomics, for
structural genomics of infectious diseases, csgid, HYDR;
HET: MSE; 1.62A {Yersinia pestis}
Length = 492
Score = 119 bits (300), Expect = 4e-29
Identities = 47/388 (12%), Positives = 112/388 (28%), Gaps = 43/388 (11%)
Query: 156 EKLAALSLTIGVGSFC-DGHIPGLAHFLEHMVFMGSEKYPEENDFDAFLS----TRGGSS 210
L L + GS + G AH L + M S + +
Sbjct: 47 SDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFT-PAQLQSLWQQGIDNERPLP 105
Query: 211 NASTEYETTTFYFDVP---EPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSIL 267
A T Y+ T + +P LK ++ S+ + + ++ + ++ +
Sbjct: 106 PAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQ 165
Query: 268 NDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQKTHYVANHMTLA 327
N + + G + G+ V + L+ + Y + MTL
Sbjct: 166 N--------IQEPWWRYRLKGSSLIGHDPGQP--VTQPVDVEKLKQFYQQWYTPDAMTLY 215
Query: 328 LQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMT 387
+ +D ++ A + + FS + + + P + + L +
Sbjct: 216 VVGNVDSRSIAAQISKAFSELKGKRTAPAAVATLAP---LPPEPVSLMNEQAAQDTLSLM 272
Query: 388 WYTPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTL 447
W TP + E + + +K ++ G+ +
Sbjct: 273 WDTPWHPIQDSMALSRYWRSDLAREALFWHIKQVLEKNNQKNLKLGF---DCRVQYQRAQ 329
Query: 448 FQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSE--------MYAEISNIHHIGFNY 499
I++ + + M + + L L + +S ++S + F
Sbjct: 330 CAIHLNTPVENLTA---NMTFVARELAALRANGLSQAEFDALMTQKNDQLSKL----FAT 382
Query: 500 HSTKSSVDYVEELSLHMQYFPSQEYITG 527
++ + + + ++ S
Sbjct: 383 YARTDTDILMSQR---LRSQQSGVVDIA 407
>3eoq_A Putative zinc protease; two similar domains of
beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure,
hydrolase; 2.29A {Thermus thermophilus}
Length = 406
Score = 98.8 bits (247), Expect = 1e-22
Identities = 67/341 (19%), Positives = 111/341 (32%), Gaps = 50/341 (14%)
Query: 159 AALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPE---ENDFDAFLSTRGGSSNAST 214
AL + G+ + G++HFLEHMVF G E FD G NA T
Sbjct: 24 VALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDR----MGAQYNAFT 79
Query: 215 EYETTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDT--CR 272
E T +Y V + +F+ P L+ + +E ++ E D
Sbjct: 80 SEEATVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARY--QDRPGFM 136
Query: 273 LEQLLATACTKENPAGKFVWGNLETLKN-TVDENELYAALRNLQKTHYVANHMTLALQAR 331
+ + +P G V G E++ T + + + Y+ +M LA R
Sbjct: 137 AYEWARARFFQGHPLGNSVLGTRESITALTRE------GMAAYHRRRYLPKNMVLAATGR 190
Query: 332 LDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTP 391
+D L A P E+ + + F ++ +P + LY+ P
Sbjct: 191 VDFDRLLAEAERLTEAWPEGEAERAYPPLTPAFGVEE-------RPYEKARALYLVALFP 243
Query: 392 -PVQQLYKTKPLDVLSWFIGHEGPGSIMSYL----RKKFLAIEIEAG---YHESGFEYNH 443
Q P VL+ +G L K LA G +G
Sbjct: 244 GVAYQEEARFPGQVLAHLLG----EEGSGRLHFALVDKGLAEVASFGLEEADRAG----- 294
Query: 444 LYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSE 484
F V + ++ ++ + L L + + E
Sbjct: 295 ---TFHAYVQA---DPARKGEVLAVLQEELDRLGREGVGEE 329
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome,
protease-peptide complex, hydrolase, plant protein;
2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1
d.185.1.1 d.185.1.1
Length = 995
Score = 95.3 bits (236), Expect = 9e-21
Identities = 55/339 (16%), Positives = 105/339 (30%), Gaps = 34/339 (10%)
Query: 177 GLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGS-SNASTEYETTTFYFDV-PEPHLKKSM 234
G+ H L+H V GS KYP + F L + NA T + T + +
Sbjct: 74 GIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLV 133
Query: 235 DIFSNFFISPLLKRD-----------------SIASEMDIVDSEFQSSILNDTCRLEQLL 277
D++ + P D S +V +E + L ++
Sbjct: 134 DVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRIA 193
Query: 278 ATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQKTHYVANHMTLALQARLDLPTL 337
A + EN G G+ + + N + + + +Y ++ + D
Sbjct: 194 QQALSPENTYGVDSGGDPKDIPNLT-----FEEFKEFHRQYYHPSNARIWFYGDDDPVHR 248
Query: 338 EAWVVEHFSGIPSNESPK-KTFSVETPFELDRWNRFYTVKPVDDV----NVLYMTWYTPP 392
+ E+ ++ SP + F D ++L + W
Sbjct: 249 LRVLSEYLDMFEASPSPNSSKIKFQKLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSE 308
Query: 393 VQQLYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINV 452
+T+ + P S LRK L + SG L F I +
Sbjct: 309 KPLDLQTQLALGFLDHLMLGTPASP---LRKILLESGLGEALVSSGLSDELLQPQFGIGL 365
Query: 453 TLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISN 491
+ + +Q + ++I L+ L++ ++ N
Sbjct: 366 KGVSE--ENVQKVEELIMDTLKKLAEEGFDNDAVEASMN 402
>3hdi_A Processing protease; CAGE structure, M16B peptidase,
metallopeptidase, peptidasome, protease, hydrolase;
2.70A {Bacillus halodurans c-125}
Length = 421
Score = 88.8 bits (221), Expect = 3e-19
Identities = 74/347 (21%), Positives = 141/347 (40%), Gaps = 46/347 (13%)
Query: 151 EKKSDEKLAALSLTIGVGS-FCDGHIPGLAHFLEHMVFMGSEKYPE---ENDFDAFLSTR 206
EK S + ++ + +G GS + G++HFLEHM F G+ FD+
Sbjct: 16 EKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSI---- 71
Query: 207 GGSSNASTEYETTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSI 266
GG NA T E T +Y V + H +++D S+ F +++ + E +V E +
Sbjct: 72 GGQVNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMV- 130
Query: 267 LNDT--CRLEQLLATACTKENPAGKFVWGNLETLKN-TVDENELYAALRNLQKTHYVANH 323
+DT + LL++A ++ G + G +ETL + LR+ Y ++
Sbjct: 131 -DDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNSFNEGM------LRHYMDRFYTGDY 183
Query: 324 MTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVE-TPFELDRWNRFYTVKPVDDVN 382
+ +++ + L + E FS + + P + R K + +
Sbjct: 184 VVISVAGNVH-DELIDKIKETFSQVKPTTYNYQGEKPMFLPNRIVR------KKETEQAH 236
Query: 383 VLYMTWYTPPVQ--QLYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHESGFE 440
+ + + P+ +Y L +L+ +G GS+ S L F I + G S F
Sbjct: 237 LC-LGYPGLPIGDKDVY---ALVLLNNVLG----GSMSSRL---FQDIREKRGLCYSVFS 285
Query: 441 YNHLYT---LFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSE 484
Y+ + + I T DQ+ ++ I + L++ ++ +
Sbjct: 286 YHSSFRDSGMLTIYAG-TGH--DQLDDLVYSIQETTSALAEKGLTEK 329
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh
zinc-binding motif, hydrolase; HET: EPE; 2.50A
{Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1
PDB: 1hr7_A 1hr8_A* 1hr9_A*
Length = 475
Score = 89.3 bits (222), Expect = 4e-19
Identities = 30/208 (14%), Positives = 60/208 (28%), Gaps = 24/208 (11%)
Query: 159 AALSLTIGVGS-FCDGHIPGLAHFLEHMVFMGSEKYPE---ENDFDAFLSTRGGSSNAST 214
+AL L I GS F ++ G H L+ + F +E + GG+ ++
Sbjct: 27 SALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELL----GGNYQCTS 82
Query: 215 EYETTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLE 274
E + V + K + + S P + + + + E + E
Sbjct: 83 SRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDE--VWMK--PE 138
Query: 275 QL----LATACTKENPAGKFVWGNLETLKN-TVDENELYAALRNLQKTHYVANHMTLALQ 329
+ L TA G + + + + L + + Y + A
Sbjct: 139 LVLPELLHTAAYSGETLGSPLICPRGLIPSISKYY------LLDYRNKFYTPENTVAAF- 191
Query: 330 ARLDLPTLEAWVVEHFSGIPSNESPKKT 357
+ ++ S P
Sbjct: 192 VGVPHEKALELTGKYLGDWQSTHPPITK 219
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh
zinc-binding motif, hydrolase; HET: EPE; 2.50A
{Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1
PDB: 1hr7_B 1hr8_B* 1hr9_B*
Length = 443
Score = 86.9 bits (216), Expect = 2e-18
Identities = 68/355 (19%), Positives = 136/355 (38%), Gaps = 44/355 (12%)
Query: 151 EKKSDEKLAALSLTIGVGS-FCDGHIPGLAHFLEHMVFMGSEKYPE---ENDFDAFLSTR 206
E + A + + + GS + G AHFLEH+ F G++ P+ E + +
Sbjct: 21 EYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIEN----I 76
Query: 207 GGSSNASTEYETTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSI 266
G NA T E T +Y + + K++DI S+ +L +I E D++ E +
Sbjct: 77 GSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEE-- 134
Query: 267 LNDTCRLEQL----LATACTKENPAGKFVWGNLETLKN-TVDENELYAALRNLQKTHYVA 321
++ +++ L K+ P G+ + G ++ +K+ T + L++ +Y
Sbjct: 135 VDKM--YDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTD------LKDYITKNYKG 186
Query: 322 NHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTV-KPVDD 380
+ M LA +D L + ++F +P +ESP S P + + +
Sbjct: 187 DRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKENTLPT 246
Query: 381 VNVLYMT---WYTPPVQQLYKTKPLDVLSWFIG----HEGPGSIM-SYLRKKFLAIEIEA 432
++ ++ P + +G G G+ S L +A
Sbjct: 247 THIAIALEGVSWSAP--DYF---VALATQAIVGNWDRAIGTGTNSPSPL---AVAASQNG 298
Query: 433 GYHESGFEYNHLYT---LFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSE 484
S ++ Y L+ + + TD ++ I++ I + + + IS
Sbjct: 299 SLANSYMSFSTSYADSGLWGMYIV-TDSNEHNVRLIVNEILKEWKRIKSGKISDA 352
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family,
PFL_5859, structural genomics, PSI-2, structure
initiative; 1.90A {Pseudomonas fluorescens}
Length = 434
Score = 85.4 bits (212), Expect = 5e-18
Identities = 34/209 (16%), Positives = 63/209 (30%), Gaps = 10/209 (4%)
Query: 158 LAALSLTIGVGSFCDGHIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYE 217
+ L L GS DG+ PG+A M+ G G +
Sbjct: 35 MFDLRLIFAAGSSQDGNAPGVALLTNAMLNEGVAGKDVG-AIAQGFEGLGADFGNGAYKD 93
Query: 218 TTTFYFDV--PEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQ 275
+ ++ +F+ P DS+A + + + F+ N
Sbjct: 94 MAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNPGKLASL 153
Query: 276 LLATACTKENPAGKFVWGNLETLKN-TVDENELYAALRNLQKTHYVANHMTLALQARLDL 334
L +P G+ +++ T+ L+ Y A ++ +AL L
Sbjct: 154 ELMKRLYGTHPYAHASDGDAKSIPPITLA------QLKAFHAKAYAAGNVVIALVGDLSR 207
Query: 335 PTLEAWVVEHFSGIPSNESPKKTFSVETP 363
EA + + +P + K P
Sbjct: 208 SDAEAIAAQVSAALPKGPALAKIEQPAEP 236
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1
d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A*
1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A*
2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A*
2bcc_A* ...
Length = 446
Score = 83.8 bits (208), Expect = 2e-17
Identities = 43/214 (20%), Positives = 81/214 (37%), Gaps = 23/214 (10%)
Query: 159 AALSLTIGVGS-FCDGHIPGLAHFLEHMVFMGSEKYPE---ENDFDAFLSTRGGSSNAST 214
+ + I GS + G +F+EH+ F G++ P E + ++ G NA +
Sbjct: 35 CTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVES----MGAHLNAYS 90
Query: 215 EYETTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLE 274
E T +Y L K++++ ++ + L+ I E D++ E Q + + +
Sbjct: 91 TREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQE--NDTS--MR 146
Query: 275 QL----LATACTKENPAGKFVWGNLETLKN-TVDENELYAALRNLQKTHYVANHMTLALQ 329
+ L + P + V G E ++ + + L HY A M LA
Sbjct: 147 DVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRAD------LTEYLSRHYKAPRMVLAAA 200
Query: 330 ARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETP 363
L+ L +HFSG+ ++
Sbjct: 201 GGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPC 234
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III,
electron transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A*
2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Length = 431
Score = 81.5 bits (202), Expect = 9e-17
Identities = 24/206 (11%), Positives = 64/206 (31%), Gaps = 26/206 (12%)
Query: 159 AALSLTIGVGS-FCDGHIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYE 217
A++ + G G+ + + G+++ +++ G + +++ +
Sbjct: 23 ASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENSAVAAK--------EGLALSSNISRD 74
Query: 218 TTTFYFDVPEPHLKKSM----DIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRL 273
++ KS+ F + L + + V + Q D
Sbjct: 75 FQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSN-FEATKKSVLKQVQD--FEDNDHP 131
Query: 274 E---QLLATACTKENPAGKFVWGNLETLKN-TVDENELYAALRNLQKTHYVANHMTLALQ 329
+ L + + P G LE+L+N V + L + H++ ++ +
Sbjct: 132 NRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVAD------LESFANNHFLNSNAVVVGT 185
Query: 330 ARLDLPTLEAWVVEHFSGIPSNESPK 355
+ L + + + P
Sbjct: 186 GNIKHEDLVNSIESKNLSLQTGTKPV 211
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1
d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B*
1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B*
2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B*
3bcc_B* ...
Length = 439
Score = 80.7 bits (200), Expect = 2e-16
Identities = 48/342 (14%), Positives = 104/342 (30%), Gaps = 47/342 (13%)
Query: 159 AALSLTIGVGS-FCDGHIPGLAHFLEHMVFMGSEKYPE---ENDFDAFLSTRGGSSNAST 214
+ + L I GS + + + G +H L + ++ +A GG + ++
Sbjct: 45 SRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEA----VGGKLSVTS 100
Query: 215 EYETTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILN-DTCRL 273
E + + + M+ N +P +R +A+ + + ++ N +
Sbjct: 101 TRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVI 160
Query: 274 EQLLATACTKENPAGKFVWGNLETLKN-TVDENELYAALRNLQKTHYVANHMTLALQARL 332
E L A A N ++ + T E L + + H+ + M L +
Sbjct: 161 ENLHAAAY--RNALANSLYCPDYRIGKVTPVE------LHDYVQNHFTSARMALIG-LGV 211
Query: 333 DLPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKPVDDVNVLY----MTW 388
P L+ E F I + E+ V+
Sbjct: 212 SHPVLKQV-AEQFLNIRGGLGLSGAKAKYHGGEIREQ------NGDSLVHAALVAESAAI 264
Query: 389 YTPPVQQLYKTKPLDVLSWFIG---HEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLY 445
+ + VL +G H GS + + A+ +N Y
Sbjct: 265 GSA---EAN---AFSVLQHVLGAGPHVKRGSNAT--SSLYQAVAKGVHQPFDVSAFNASY 316
Query: 446 T---LFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSE 484
+ LF + ++ + ++ ++Q +S+
Sbjct: 317 SDSGLFGFYTI-SQA--ASAGDVIKAAYNQVKTIAQGNLSNP 355
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding,
hydrolase; 3.00A {Sphingomonas}
Length = 424
Score = 80.4 bits (199), Expect = 2e-16
Identities = 31/213 (14%), Positives = 66/213 (30%), Gaps = 15/213 (7%)
Query: 158 LAALSLTIGVGSFCD-GHIPGLAHFLEHMVFMGSEKYPEENDFDAF---LSTRGGSSNAS 213
+ + + GS + G+A ++ G+ D +A L+ G
Sbjct: 25 MLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARLGGG 84
Query: 214 TEYETTTFYFDV--PEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTC 271
E + +F V ++ I + P + E + + +
Sbjct: 85 AEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQPGS 144
Query: 272 RLEQLLATACTKENPAGKFVWGNLETLKN-TVDENELYAALRNLQKTHYVANHMTLALQA 330
L + ++P G ++ TL+ + D L + +THYVA + L
Sbjct: 145 ILGRRFTELAYGKHPYGHV--SSVATLQKISRD------QLVSFHRTHYVARTAVVTLVG 196
Query: 331 RLDLPTLEAWVVEHFSGIPSNESPKKTFSVETP 363
+ E + + +P+ + P
Sbjct: 197 DITRAEAETIAQQLTADLPAGATLPPLPDPAMP 229
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A
{Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Length = 1193
Score = 78.2 bits (191), Expect = 3e-15
Identities = 48/416 (11%), Positives = 108/416 (25%), Gaps = 78/416 (18%)
Query: 177 GLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGS-SNASTEYETTTFYFDVP-EPHLKKSM 234
G+ H LEH V GS+ Y +N + NA T + T + M
Sbjct: 126 GIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLNAYTFNDRTVYMAGSMNNKDFFNIM 185
Query: 235 DIFSNFFISPLLKRDSIASEMD-------------------------------IVDSEFQ 263
++ + P + + E + IV +E +
Sbjct: 186 GVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVYNEMK 245
Query: 264 SSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQKTHYVANH 323
++ + L +N G+ + + N Y + +Y
Sbjct: 246 GALSSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLT-----YEEFKEFYYKNYNPKK 300
Query: 324 MTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFS---VETPFELDRW-NRFYTVKPVD 379
+ + ++ + L +V ++ + ++ +T + + + Y +
Sbjct: 301 VKVFFFSKNNPTELLNFVDQYLGQLDYSKYRDDAVESVEYQTYKKGPFYIKKKYGDHSEE 360
Query: 380 DVNVLYMTWYTPPVQQLYK----------------------------TKPLDVLSWFI-G 410
N++ + W P P D I
Sbjct: 361 KENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSNGSHSSDLSLENPTDYFVLLIIN 420
Query: 411 HEGPGSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVT-------LTDQGVDQIQ 463
+ + S L K + + G + + +F I +
Sbjct: 421 NLLIHTPESVLYKALTDCGLGNNVIDRGLNDSLVQYIFSIGLKGIKRNNEKIKNFDKVHY 480
Query: 464 HIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHMQYF 519
+ D+I L+ + + + N + K+S + +
Sbjct: 481 EVEDVIMNALKKVVKEGFNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLN 536
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus
faecalis V583, STR genomics, PSI-2, protein structure
initiative; 1.95A {Enterococcus faecalis}
Length = 425
Score = 67.7 bits (166), Expect = 2e-12
Identities = 22/227 (9%), Positives = 57/227 (25%), Gaps = 25/227 (11%)
Query: 157 KLAALSLTIGVGSFCDGHIPGLAHFLEHMVFMGSEKYPEENDFDAFL-STRGGSSNAST- 214
K L + + L ++ S YP + L G S
Sbjct: 23 KTVRLLVRFNTRL--NHETITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVS 80
Query: 215 ---EYETTTFYFDVPEPH-------LKKSMDIFSNFFISPLLKR-----DSIASEMDIVD 259
++ H L +++D +P ++ ++ E + +
Sbjct: 81 KKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLK 140
Query: 260 SEFQSSILN-DTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQKTH 318
+ +S + + T L + + +G + L L A +
Sbjct: 141 AYLESIVEDKQTYASLALQSVYFNQSEDQKIPSFGTVAALAE-ETAASLAAYYQK----M 195
Query: 319 YVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESPKKTFSVETPFE 365
+ + + + ++ L + ++
Sbjct: 196 LAEDQVDIFVLGDVNEAELVPLFKQLPFTPREEGKAAIFYNQPIRNV 242
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III,
electron transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B*
1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Length = 352
Score = 66.6 bits (163), Expect = 4e-12
Identities = 23/205 (11%), Positives = 66/205 (32%), Gaps = 21/205 (10%)
Query: 159 AALSLTIGVGSFCDGHIPGLAHFLEHMVFMGSEKYPE---ENDFDAFLSTRGGSSNASTE 215
+ L++ + GS G+AH L F + + + GG+ ++ +
Sbjct: 13 STLAVKVHGGS-RYATKDGVAHLLNRFNFQNTNTRSALKLVRESEL----LGGTFKSTLD 67
Query: 216 YETTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIA-SEMDIVDSEFQSSILN-DTCRL 273
E T + L ++ ++ K + S + ++ +
Sbjct: 68 REYITLKATFLKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAE 127
Query: 274 EQLLATACTKENPAGKFVWGNLETLKN-TVDENELYAALRNLQKTHYVANHMTLALQARL 332
+QL A G + + ++ ++ + +++ Y ++ ++ + +
Sbjct: 128 DQLYAITF--RKGLGNPLLY--DGVERVSLQD------IKDFADKVYTKENLEVSGENVV 177
Query: 333 DLPTLEAWVVEHFSGIPSNESPKKT 357
+ S +P+ +S
Sbjct: 178 EADLKRFVDESLLSTLPAGKSLVSK 202
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 1e-07
Identities = 66/502 (13%), Positives = 129/502 (25%), Gaps = 198/502 (39%)
Query: 47 LSSVKMQTDPK---AEEAFKRLPLPVKGLCDRYKYSVIQLKNGLTALLV-SDVEN----- 97
L + Q DP + + L + + + +++ K LLV +V+N
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR-LLKSKPYENCLLVLLNVQNAKAWN 260
Query: 98 ---------LITLDENVTADDKMSMEQESEESGNESGDETASSVDSQGMEVDEFEEADRS 148
L T + VT D +S + S + S + DE +
Sbjct: 261 AFNLSCKILLTTRFKQVT--DFLSAATTTHISLDHH---------SMTLTPDEVKS---- 305
Query: 149 KQEKKSDEKLAALSLTIGVGSF----CDGH---IPGLAHFLEHMVFMGSEKYPEENDFDA 201
L L + + +A + + + + N D
Sbjct: 306 ---------LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKHVN-CDK 354
Query: 202 FLSTRGGSSNASTEYETTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSE 261
+ S N E + + +F S I
Sbjct: 355 LTTIIESSLNVLEPAEYRKMF---------DRLSVF----------PPSA----HIP--- 388
Query: 262 FQSSILNDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELY---AALRNLQKTH 318
LL+ +W ++ V N+L+ + +++
Sbjct: 389 ------------TILLSL-----------IWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 319 YVANHMTLALQARLD-LPTLEAWVVEHFSGIPSNESPKKTFSVETPFELDRWNRFYTVKP 377
+ L L+ +L+ L +V+H+ PK D +
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHY------NIPKT---------FDSDD--LIPPY 468
Query: 378 VDDVNVLYMTWYTPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGYHES 437
+D Y +Y IG +H
Sbjct: 469 LDQ----Y--FY-----------------SHIG-----------------------HHLK 482
Query: 438 GFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHHIGF 497
E+ TLF+ ++F R L Q I H
Sbjct: 483 NIEHPERMTLFR------------------MVFLDFRFLEQK------------IRHDST 512
Query: 498 NYHSTKSSVDYVEELSLHMQYF 519
++++ S ++ +++L + Y
Sbjct: 513 AWNASGSILNTLQQLKFYKPYI 534
Score = 50.6 bits (120), Expect = 1e-06
Identities = 69/466 (14%), Positives = 114/466 (24%), Gaps = 179/466 (38%)
Query: 223 FDVPEPHLKKSMDIFSNF---FISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQ---L 276
F+ E + DI S F F+ +D I+ E I+ + L
Sbjct: 9 FETGEHQYQYK-DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 277 LATACTK-ENPAGKFVWGNLET-----------------------------LKNTVDE-- 304
T +K E KFV L L N
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 305 ----------NELYAALRNLQKTHYVANH-M------TLALQARLDLPTLEA------WV 341
+L AL L+ V + +AL L W+
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 342 -----------VEH----FSGIPSNESPKKTFSVETPFEL----DRWNRFYTVKP----- 377
+E I N + + S + R KP
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 378 --VDDVN-------------VLYMT----------------------------------- 387
+ +V +L T
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 388 --WYTPPVQQL----YKTKPLDVLSWFIG---HEGPGSIMSYLR---KKFLAIEIEAGY- 434
+ Q L T P LS I +G + ++ K I IE+
Sbjct: 308 LKYLDCRPQDLPREVLTTNPR-RLS-IIAESIRDGLATWDNWKHVNCDKLTTI-IESSLN 364
Query: 435 HESGFEYNHLY---TLFQINV-----TL----TDQGVDQIQHIMDIIFQYLRLLSQSPIS 482
EY ++ ++F + L D + +++ + +Y L+ + P
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKE 423
Query: 483 SEMYAEISNIHHIGFNYHSTKSSVDYVEELSLHM----QYFPSQEY 524
S + I I Y K ++ E +LH Y + +
Sbjct: 424 STIS-----IPSI---YLELKVKLE--NEYALHRSIVDHYNIPKTF 459
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 7e-06
Identities = 66/414 (15%), Positives = 120/414 (28%), Gaps = 142/414 (34%)
Query: 162 SLTIGVGSF-CDGHIPGLAHFLEHMVFMGSE-KYPEENDFDAFLSTRGGSSNAST-EYET 218
LT+ GS +P + F+ S+ + + F + + E
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFI------ASQLQ-------EQFNKILPEPTEGFAADDEP 54
Query: 219 TTFYFDVPEPHLKKSMDIFSNF--FISPLLKRDSIASEMDIVDS---EFQSSIL--ND-- 269
TT L F ++S L++ + +++ EF++ L ND
Sbjct: 55 TT------PAEL------VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH 102
Query: 270 --TCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQKTHYVANHMTLA 327
+L Q T K E +KN Y R + K + + A
Sbjct: 103 ALAAKLLQENDTTLVKTK----------ELIKN-------YITARIMAKRPFDKKSNS-A 144
Query: 328 LQARLDLPTLEAWVVEHFSGIPSNESPKKTFSV-------ETPF-EL-DRWNRFYTVKPV 378
L A E + ++ + F EL D + ++ + V
Sbjct: 145 L--------FRA----------VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL--V 184
Query: 379 DDV-----NVLYMTWYTPPVQQLYKTKPLDVLSWFIGHEGPGSI--MSYLRKKFLA---I 428
D+ L T + T+ L++L W E P + YL ++ I
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL---ENPSNTPDKDYLLSIPISCPLI 241
Query: 429 EIE--AGY----HESGFEYNHLYTLFQINVTLTDQGV---------DQIQHIMDIIFQYL 473
+ A Y GF L + + T QG+ D + + + +
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLK-GATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 474 RLLSQSPISSEMYAEISNIHHIGFNYHST-----------KSSVDYVEELSLHM 516
+L IG + + S++ E + M
Sbjct: 301 TVLF----------------FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Score = 28.9 bits (64), Expect = 6.0
Identities = 39/271 (14%), Positives = 69/271 (25%), Gaps = 106/271 (39%)
Query: 134 SQ----GMEV--------DEFEEADRSKQEK---------KSDEKLAALSLTIGVGSFCD 172
SQ GM++ D + AD ++ ++ +LTI
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPV----NLTI------- 1674
Query: 173 GHIPG-----LAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEYETTTFYFDVPE 227
H G + M+F E D L T +T++ F +
Sbjct: 1675 -HFGGEKGKRIRENYSAMIF--------ETIVDGKLKTE--KIFKEINEHSTSYTFRSEK 1723
Query: 228 PHLKK-----------SMDIFSNFFISPLLKRDSIASEMDIVD--S--EF-----QSSIL 267
L F LK + S E+ + ++
Sbjct: 1724 GLLSATQFTQPALTLMEKAAFE------DLKSKGLIPADATFAGHSLGEYAALASLADVM 1777
Query: 268 N--DTCRL----EQLLATACTKE------------NPAGKFVWGNLETLKNTVDENE--- 306
+ + + A ++ NP + E L+ V+
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 307 ---LYAA---LRNLQKTHYV-ANHMTLALQA 330
+ + N Q YV A + AL
Sbjct: 1838 GWLVEIVNYNVENQQ---YVAAGDLR-ALDT 1864
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc
genomics, PSI-2, protein structure initiative, midwest
CENT structural genomics; 2.15A {Bordetella pertussis}
PDB: 3ivl_A
Length = 197
Score = 36.2 bits (84), Expect = 0.013
Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 21/134 (15%)
Query: 356 KTFSVETPFELDRWNRFYTVKPVDDVNVLYMTWYTPPVQQLYKTK---PLDVLSWFIGHE 412
++VE + +R + ++ ++ P + LD+ + +
Sbjct: 2 NAYTVEPVQDGER--SVTLRRAGG-TPLVAAMYHLPA----AGSPDFVGLDLAATILAD- 53
Query: 413 GPGSIMSY--LRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIF 470
P S + Y L LA + + L L G+D + +
Sbjct: 54 TPSSRL-YHALVPTKLASGVFGFTMDQ-----LDPGLAMFGAQL-QPGMD-QDKALQTLT 105
Query: 471 QYLRLLSQSPISSE 484
L LS P S E
Sbjct: 106 ATLESLSSKPFSQE 119
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.018
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 151 EKKSDEKLAALSLTIGVGSFCDGHIPGLA 179
EK++ +KL A SL + + D P LA
Sbjct: 18 EKQALKKLQA-SLKL----YADDSAPALA 41
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 1.0
Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 17/70 (24%)
Query: 105 VTADDKMSMEQES------------EESGNESGDETASSVDSQGMEVDEF-----EEADR 147
+ D+++ E ES +E S + +++E+ E+ ++
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 148 SKQEKKSDEK 157
+K + +K
Sbjct: 134 NKINNRIADK 143
>2ftr_A BH0200; structural genomics, joint center for structural genomics,
J protein structure initiative, PSI-2, unknown function;
HET: MSE; 1.40A {Bacillus halodurans} SCOP: d.58.4.15
Length = 108
Score = 27.8 bits (62), Expect = 3.2
Identities = 11/37 (29%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 318 HYVANHMTLALQARLDLPTLEAWVVEHFSGIPSNESP 354
HY H L + +P L V G P ES
Sbjct: 27 HYFNTHAPLTRK----IPGLRDMKVTRIVGSPMGESK 59
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type
ATPase, membrane protein, hydrolase, aluminium fluoride,
ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A
Length = 1034
Score = 29.2 bits (66), Expect = 4.0
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 389 YTPPVQQLYKTKPLDVLSWFI 409
Y P + ++ P+ W +
Sbjct: 981 YCPGMPNIFNFMPIRFQWWLV 1001
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 29.1 bits (66), Expect = 4.6
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 389 YTPPVQQLYKTKPLDVLSWFI 409
Y P + PL WF
Sbjct: 975 YCPGTDVALRMYPLKPSWWFC 995
>2aen_A Hemagglutinin, outer capsid protein VP4, VP8* core; neutralization
antigen, spike protein; 1.60A {Human rotavirus A} PDB:
2dwr_A
Length = 164
Score = 27.9 bits (62), Expect = 5.9
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 207 GGSSNASTEYETTTFYFDVPEPHLKKSMDIFSNFFISP 244
G + A+T+ T ++ S+ I S F+I P
Sbjct: 119 GETPRATTDSSNTADLNNI-------SIIIHSEFYIIP 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.383
Gapped
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,896,821
Number of extensions: 464633
Number of successful extensions: 1051
Number of sequences better than 10.0: 1
Number of HSP's gapped: 999
Number of HSP's successfully gapped: 37
Length of query: 528
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 430
Effective length of database: 3,965,535
Effective search space: 1705180050
Effective search space used: 1705180050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)