RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12151
(528 letters)
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli
[TaxId: 562]}
Length = 240
Score = 125 bits (314), Expect = 2e-33
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 3/153 (1%)
Query: 375 VKPVDDVNVLYMTWYTPPVQQLYKTKPLDVLSWFIGHEGPGSIMSYLRKKFLAIEIEAGY 434
P VL + + +++K +++++ IG+ PG++ +L+K+ L I A
Sbjct: 18 YVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANS 77
Query: 435 HESGFEYNHLYTLFQINVTLTDQGVDQIQHIMDIIFQYLRLLSQSPISSEMYAEISNIHH 494
+ I+ +LTD+G+ ++ IF YL LL + I + + E++N+
Sbjct: 78 DPIVNGN---SGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLD 134
Query: 495 IGFNYHSTKSSVDYVEELSLHMQYFPSQEYITG 527
I F Y S +DYVE L+ M P + +
Sbjct: 135 IDFRYPSITRDMDYVEWLADTMIRVPVEHTLDA 167
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 257
Score = 91.1 bits (225), Expect = 3e-21
Identities = 32/200 (16%), Positives = 61/200 (30%), Gaps = 24/200 (12%)
Query: 177 GLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSS-NASTEYETTTFYFDVPEPH------ 229
G+ H L+H V GS KYP + F L + NA T + T +
Sbjct: 60 GIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLV 119
Query: 230 ------------LKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQLL 277
+ + + L S +V +E + L ++
Sbjct: 120 DVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRIA 179
Query: 278 ATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQKTHYVANHMTLALQARLDLPTL 337
A + EN G G+ + N + + + +Y ++ + D
Sbjct: 180 QQALSPENTYGVDSGGDPKD-----IPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHR 234
Query: 338 EAWVVEHFSGIPSNESPKKT 357
+ E+ ++ SP +
Sbjct: 235 LRVLSEYLDMFEASPSPNSS 254
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId:
562]}
Length = 240
Score = 89.0 bits (219), Expect = 1e-20
Identities = 67/206 (32%), Positives = 99/206 (48%), Gaps = 2/206 (0%)
Query: 151 EKKSDEKLAALSLTIGVGSFCDGH-IPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGS 209
+ +L + VGS D GLAH+LEHM MGS+KYP+ + +L GGS
Sbjct: 35 VSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGS 94
Query: 210 SNASTEYETTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILND 269
NAST T FY +V L ++D ++ PLL + E + V++E + D
Sbjct: 95 HNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRD 154
Query: 270 TCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQKTHYVANHMTLALQ 329
R+ Q+ A +P KF GNLETL + N + AL++ + +Y AN M +
Sbjct: 155 GMRMAQVSAETINPAHPGSKFSGGNLETLSD-KPGNPVQQALKDFHEKYYSANLMKAVIY 213
Query: 330 ARLDLPTLEAWVVEHFSGIPSNESPK 355
+ LP L + F +P+ ES K
Sbjct: 214 SNKPLPELAKMAADTFGRVPNKESKK 239
Score = 30.5 bits (67), Expect = 0.44
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 69 VKGLCDRYKYSVIQLKNGLTALLVSD 94
K D +Y I+L NG+ LLVSD
Sbjct: 12 RKSDKDNRQYQAIRLDNGMVVLLVSD 37
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 202
Score = 79.7 bits (195), Expect = 9e-18
Identities = 23/203 (11%), Positives = 60/203 (29%), Gaps = 9/203 (4%)
Query: 152 KKSDEKLAALSLTIGVGSFCDGHIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSN 211
+ + K++ L++ + GS G+AH L F + GG+
Sbjct: 6 RDAPTKISTLAVKVHGGSRYATK-DGVAHLLNRFNFQNTNTRSAL-KLVRESELLGGTFK 63
Query: 212 ASTEYETTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTC 271
++ + E T + L ++ ++ K + + +
Sbjct: 64 STLDREYITLKATFLKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPV 123
Query: 272 RLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQKTHYVANHMTLALQAR 331
+ + A T G + E +++ Y ++ ++ +
Sbjct: 124 KSAEDQLYAITFRKGLGNPLL-------YDGVERVSLQDIKDFADKVYTKENLEVSGENV 176
Query: 332 LDLPTLEAWVVEHFSGIPSNESP 354
++ S +P+ +S
Sbjct: 177 VEADLKRFVDESLLSTLPAGKSL 199
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 232
Score = 78.2 bits (191), Expect = 6e-17
Identities = 44/211 (20%), Positives = 81/211 (38%), Gaps = 7/211 (3%)
Query: 152 KKSDEKLAALSLTIGVGSFCDGH-IPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSS 210
++S + + + I GS + G +F+EH+ F G K N + + + G
Sbjct: 27 EQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKG-TKNRPGNALEKEVESMGAHL 85
Query: 211 NASTEYETTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDT 270
NA + E T +Y L K++++ ++ + L+ I E D++ E Q + +
Sbjct: 86 NAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMR 145
Query: 271 CRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQKTHYVANHMTLALQA 330
+ L + P + V G E ++ + L HY A M LA
Sbjct: 146 DVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRAD-----LTEYLSRHYKAPRMVLAAAG 200
Query: 331 RLDLPTLEAWVVEHFSGIPSNESPKKTFSVE 361
L+ L +HFSG+ ++
Sbjct: 201 GLEHRQLLDLAQKHFSGLSGTYDEDAVPTLS 231
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 213
Score = 70.8 bits (172), Expect = 1e-14
Identities = 24/202 (11%), Positives = 61/202 (30%), Gaps = 16/202 (7%)
Query: 157 KLAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTE 215
A++ + G G+ + + G+++ +++ + A + G + +++
Sbjct: 21 HTASVGVVFGSGAANENPYNNGVSNLWKNIFLS--------KENSAVAAKEGLALSSNIS 72
Query: 216 YETTTFYFDVPEPHLKKSMDIFSNFFISP---LLKRDSIASEMDIVDSEFQSSILNDTCR 272
+ ++ KS+D + FI LL + + V + Q ND
Sbjct: 73 RDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPN 132
Query: 273 LEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQKTHYVANHMTLALQARL 332
EN + A L + H++ ++ + +
Sbjct: 133 R----VLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHFLNSNAVVVGTGNI 188
Query: 333 DLPTLEAWVVEHFSGIPSNESP 354
L + + + P
Sbjct: 189 KHEDLVNSIESKNLSLQTGTKP 210
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase
(MPP) beta chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 222
Score = 70.5 bits (171), Expect = 2e-14
Identities = 45/200 (22%), Positives = 84/200 (42%), Gaps = 7/200 (3%)
Query: 157 KLAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTE 215
A + + + GS + G AHFLEH+ F + + + + G NA T
Sbjct: 23 SSATVGIFVDAGSRAENVKNNGTAHFLEHLAFK-GTQNRPQQGIELEIENIGSHLNAYTS 81
Query: 216 YETTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQ 275
E T +Y + + K++DI S+ +L +I E D++ E + +
Sbjct: 82 RENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFD 141
Query: 276 LLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQKTHYVANHMTLALQARLDLP 335
L K+ P G+ + G ++ +K+ + L++ +Y + M LA +D
Sbjct: 142 HLHEITYKDQPLGRTILGPIKNIKSITRTD-----LKDYITKNYKGDRMVLAGAGAVDHE 196
Query: 336 TLEAWVVEHFSGIPSNESPK 355
L + ++F +P +ESP
Sbjct: 197 KLVQYAQKYFGHVPKSESPV 216
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase
(MPP) alpha chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 220
Score = 60.5 bits (145), Expect = 4e-11
Identities = 31/204 (15%), Positives = 62/204 (30%), Gaps = 8/204 (3%)
Query: 152 KKSDEKLAALSLTIGVGSFCDG-HIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSS 210
+ +AL L I GS +G ++ G H L+ + F +E + GG+
Sbjct: 20 SNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLEL-LGGNY 78
Query: 211 NASTEYETTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDT 270
++ E + V + K + + S P + + + + E +
Sbjct: 79 QCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPE 138
Query: 271 CRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQKTHYVANHMTLALQA 330
L +LL TA G + + + L + + Y + A
Sbjct: 139 LVLPELLHTAAYSGETLGSPLICPRGLIPSIS-----KYYLLDYRNKFYTPENTVAAF-V 192
Query: 331 RLDLPTLEAWVVEHFSGIPSNESP 354
+ ++ S P
Sbjct: 193 GVPHEKALELTGKYLGDWQSTHPP 216
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 219
Score = 56.5 bits (135), Expect = 9e-10
Identities = 25/190 (13%), Positives = 61/190 (32%), Gaps = 9/190 (4%)
Query: 158 LAALSLTIGVGSFCD-GHIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRGGSSNASTEY 216
+ + L I GS + + G +H L + + K + GG + ++
Sbjct: 28 ASRIGLFIKAGSRYENSNNLGTSHLLRLASSL-TTKGASSFKITRGIEAVGGKLSVTSTR 86
Query: 217 ETTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSILNDTCRLEQL 276
E + + + M+ N +P +R +A+ + + ++ N + +
Sbjct: 87 ENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIEN 146
Query: 277 LATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQKTHYVANHMTLALQARLDLPT 336
A N ++ + L + + H+ + M L + P
Sbjct: 147 -LHAAAYRNALANSLYCPDYRIGKVT-----PVELHDYVQNHFTSARMALIG-LGVSHPV 199
Query: 337 LEAWVVEHFS 346
L+ + +
Sbjct: 200 LKQVAEQFLN 209
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli
[TaxId: 562]}
Length = 229
Score = 52.3 bits (124), Expect = 2e-08
Identities = 12/204 (5%), Positives = 46/204 (22%), Gaps = 15/204 (7%)
Query: 149 KQEKKSDEKLAALSLTIGVGS-FCDGHIPGLAHFLEHMVFMGSEKYPEENDFDAFLSTRG 207
+ E A +SL + + +++ + ++ +
Sbjct: 35 PSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVG------- 87
Query: 208 GSSNASTEYETTTFYFDVPEPHLKKSMDIFSNFFISPLLKRDSIASEMDIVDSEFQSSIL 267
G S ++ + L + + S D + + S+
Sbjct: 88 GISFSTNANNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEK 147
Query: 268 NDTCRLEQLLATACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQKTHYVANHMTLA 327
+ A ++ + + L + + + +
Sbjct: 148 GKAFEQAIMPAQMLSQVPYFSRDER--RKILPSITLKE-----VLAYRDALKSGARPEFM 200
Query: 328 LQARLDLPTLEAWVVEHFSGIPSN 351
+ + + + ++
Sbjct: 201 VIGNMTEAQATTLARDVQKQLGAD 224
>d1oe4a_ c.18.1.3 (A:) Single-strand selective monofunctional
uracil-DNA glycosylase SMUG1 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 245
Score = 27.5 bits (61), Expect = 3.3
Identities = 9/49 (18%), Positives = 13/49 (26%), Gaps = 9/49 (18%)
Query: 280 ACTKENPAGKFVWGNLETLKNTVDENELYAALRNLQKTHYVANHMTLAL 328
C + +G W + L K +V NH L
Sbjct: 106 ECPQSEVSGARFWSLFK---------SLCGQPETFFKHCFVHNHCPLIF 145
>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA
{Haemophilus influenzae [TaxId: 727]}
Length = 152
Score = 27.1 bits (59), Expect = 3.6
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 2/92 (2%)
Query: 408 FIGHEGP--GSIMSYLRKKFLAIEIEAGYHESGFEYNHLYTLFQINVTLTDQGVDQIQHI 465
+G G G YLR I I + E I + ++ I+ +
Sbjct: 14 IVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIERL 73
Query: 466 MDIIFQYLRLLSQSPISSEMYAEISNIHHIGF 497
+ + + L + + E A++ +H
Sbjct: 74 KPYLTENMLLADLTSVKREPLAKMLEVHTGAV 105
>d1kqra_ b.29.1.14 (A:) vp4 sialic acid binding domain {Rhesus
rotavirus [TaxId: 10969]}
Length = 160
Score = 27.0 bits (60), Expect = 3.6
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Query: 207 GGSSNASTEYETTTFYFDVPEPHLKKSMDIFSNFFISP 244
G + N +T+Y +TT Y V +M F +F+I P
Sbjct: 115 GETPNVTTKYYSTTNYDSV-------NMTAFCDFYIIP 145
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
transmembrane domain M {Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]}
Length = 472
Score = 27.7 bits (61), Expect = 4.1
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 389 YTPPVQQLYKTKPLDVLSWFI 409
Y P+ ++K K LD+ W +
Sbjct: 427 YVDPLPMIFKLKALDLTQWLM 447
>d1ihma_ b.121.4.3 (A:) Calicivirus capsid protein {Norwalk virus
[TaxId: 11983]}
Length = 492
Score = 26.7 bits (59), Expect = 8.9
Identities = 8/16 (50%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
Query: 364 FELDRW-NRFYTVKPV 378
F W +RFY +KPV
Sbjct: 473 FVFVSWVSRFYQLKPV 488
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.383
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,919,461
Number of extensions: 87602
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 19
Length of query: 528
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 439
Effective length of database: 1,185,626
Effective search space: 520489814
Effective search space used: 520489814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)