BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12152
         (133 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZG2|A Chain A, Solution Nmr Structure Of The Upf0213 Protein Bh0048
          From Bacillus Halodurans. Northeast Structural Genomics
          Target Bhr2
          Length = 107

 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 8/87 (9%)

Query: 4  HGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSNRGPWDMVLIVYGFP 63
          H VY+L  ++    G  Y GYT D DRRIK+H  GK   GA  T  RGP+ +V   + FP
Sbjct: 8  HYVYILECKD----GSWYTGYTTDVDRRIKKHASGK---GAKYTRGRGPFRLV-ATWAFP 59

Query: 64 NDISALRFEWAWQHPKMSRRLQHVARK 90
          +   A+R+E+  +H    ++ Q V+ K
Sbjct: 60 SKEEAMRWEYEVKHLSRRKKEQLVSLK 86


>pdb|1YWL|A Chain A, Solution Nmr Structure Of The Protein Ef2693 From E.
          Faecalis: Northeast Structural Genomics Consortium
          Target Efr36
          Length = 96

 Score = 31.6 bits (70), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 8/68 (11%)

Query: 18 GRTYIGYTVDPDRRIKQHNKGKDFGGAHKT--SNRGPWDMVLIVYGFPNDISALRFEWAW 75
          G  Y GYT +P+RR+ +HN G    GA  T  + R P  M+     F     A + E A+
Sbjct: 17 GSFYGGYTTEPERRLTEHNSG---TGAKYTRLAKRRPVIMIHTE-KFETRSEATKAEAAF 72

Query: 76 QHPKMSRR 83
          +  K++R+
Sbjct: 73 K--KLTRK 78


>pdb|1IM8|A Chain A, Crystal Structure Of Yeco From Haemophilus Influenzae
           (hi0319), A Methyltransferase With A Bound
           S-adenosylhomocysteine
 pdb|1IM8|B Chain B, Crystal Structure Of Yeco From Haemophilus Influenzae
           (hi0319), A Methyltransferase With A Bound
           S-adenosylhomocysteine
          Length = 244

 Score = 30.8 bits (68), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 76  QHPKMSRRLQHVARKKSKETTYTYCLRLLHIMLQTAPWQRLPLTVQWLKPE 126
             P + R  QH+A   S+      C  + H+ ++ A    L  T+Q+L PE
Sbjct: 93  SQPXVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASXVILNFTLQFLPPE 143


>pdb|1EG3|A Chain A, Structure Of A Dystrophin Ww Domain Fragment In Complex
          With A Beta-Dystroglycan Peptide
 pdb|1EG4|A Chain A, Structure Of A Dystrophin Ww Domain Fragment In Complex
          With A Beta-Dystroglycan Peptide
          Length = 261

 Score = 26.9 bits (58), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 46 KTSNRGPWDMVLIVYGFPNDISALRFEWAWQHPKMSRRLQHVA 88
           TS +GPW+  +     P  I+       W HPKM+   Q +A
Sbjct: 9  STSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTELYQSLA 51


>pdb|3AOF|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In
          Complex With Mannotriose Substrate
 pdb|3AOF|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In
          Complex With Mannotriose Substrate
          Length = 317

 Score = 26.2 bits (56), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 26 VDPDRRIKQHNKGKDFGGAHKTSNRGPWDMVL 57
          VDP  R K   +G + G A +  N G W +V+
Sbjct: 3  VDPFERNKILGRGINIGNALEAPNEGDWGVVI 34


>pdb|1HC1|A Chain A, Crystal Structure Of Hexameric Haemocyanin From Panulirus
           Interruptus Refined At 3.2 Angstroms Resolution
 pdb|1HCY|A Chain A, Crystal Structure Of Hexameric Haemocyanin From Panulirus
           Interruptus Refined At 3.2 Angstroms Resolution
 pdb|1HCY|B Chain B, Crystal Structure Of Hexameric Haemocyanin From Panulirus
           Interruptus Refined At 3.2 Angstroms Resolution
 pdb|1HCY|C Chain C, Crystal Structure Of Hexameric Haemocyanin From Panulirus
           Interruptus Refined At 3.2 Angstroms Resolution
 pdb|1HCY|D Chain D, Crystal Structure Of Hexameric Haemocyanin From Panulirus
           Interruptus Refined At 3.2 Angstroms Resolution
 pdb|1HCY|E Chain E, Crystal Structure Of Hexameric Haemocyanin From Panulirus
           Interruptus Refined At 3.2 Angstroms Resolution
 pdb|1HCY|F Chain F, Crystal Structure Of Hexameric Haemocyanin From Panulirus
           Interruptus Refined At 3.2 Angstroms Resolution
 pdb|1HC1|B Chain B, Crystal Structure Of Hexameric Haemocyanin From Panulirus
           Interruptus Refined At 3.2 Angstroms Resolution
 pdb|1HC1|C Chain C, Crystal Structure Of Hexameric Haemocyanin From Panulirus
           Interruptus Refined At 3.2 Angstroms Resolution
 pdb|1HC1|D Chain D, Crystal Structure Of Hexameric Haemocyanin From Panulirus
           Interruptus Refined At 3.2 Angstroms Resolution
 pdb|1HC1|E Chain E, Crystal Structure Of Hexameric Haemocyanin From Panulirus
           Interruptus Refined At 3.2 Angstroms Resolution
 pdb|1HC1|F Chain F, Crystal Structure Of Hexameric Haemocyanin From Panulirus
           Interruptus Refined At 3.2 Angstroms Resolution
          Length = 657

 Score = 26.2 bits (56), Expect = 5.5,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 21  YIGYTVDPDRRIKQHNKGKDFGGAH 45
           Y+  T D D+  + HN G D+GG H
Sbjct: 583 YVAVT-DGDKDTEGHNGGHDYGGTH 606


>pdb|3MMU|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
          Hyperthermophilic Thermotoga Maritima
 pdb|3MMU|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
          Hyperthermophilic Thermotoga Maritima
 pdb|3MMU|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
          Hyperthermophilic Thermotoga Maritima
 pdb|3MMU|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
          Hyperthermophilic Thermotoga Maritima
 pdb|3MMU|E Chain E, Crystal Structure Of Endoglucanase Cel5a From The
          Hyperthermophilic Thermotoga Maritima
 pdb|3MMU|F Chain F, Crystal Structure Of Endoglucanase Cel5a From The
          Hyperthermophilic Thermotoga Maritima
 pdb|3MMU|G Chain G, Crystal Structure Of Endoglucanase Cel5a From The
          Hyperthermophilic Thermotoga Maritima
 pdb|3MMU|H Chain H, Crystal Structure Of Endoglucanase Cel5a From The
          Hyperthermophilic Thermotoga Maritima
 pdb|3MMW|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
          Hyperthermophilic Thermotoga Maritima
 pdb|3MMW|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
          Hyperthermophilic Thermotoga Maritima
 pdb|3MMW|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
          Hyperthermophilic Thermotoga Maritima
 pdb|3MMW|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
          Hyperthermophilic Thermotoga Maritima
 pdb|3AMC|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo
          Form And DimerAU
 pdb|3AMC|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo
          Form And DimerAU
 pdb|3AMD|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo
          Form And TetramerAU
 pdb|3AMD|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo
          Form And TetramerAU
 pdb|3AMD|C Chain C, Crystal Structures Of Thermotoga Maritima Cel5a, Apo
          Form And TetramerAU
 pdb|3AMD|D Chain D, Crystal Structures Of Thermotoga Maritima Cel5a, Apo
          Form And TetramerAU
          Length = 317

 Score = 26.2 bits (56), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 26 VDPDRRIKQHNKGKDFGGAHKTSNRGPWDMVL 57
          VDP  R K   +G + G A +  N G W +V+
Sbjct: 3  VDPFERNKILGRGINIGNALEAPNEGDWGVVI 34


>pdb|3AMG|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In
          Complex With Cellobiose Substrate, Mutant Form
 pdb|3AMG|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In
          Complex With Cellobiose Substrate, Mutant Form
          Length = 317

 Score = 26.2 bits (56), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 26 VDPDRRIKQHNKGKDFGGAHKTSNRGPWDMVL 57
          VDP  R K   +G + G A +  N G W +V+
Sbjct: 3  VDPFERNKILGRGINIGNALEAPNEGDWGVVI 34


>pdb|3AZR|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
          Thermotoga Maritima Cel5a Structures In Complex With
          Cellobiose
 pdb|3AZR|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
          Thermotoga Maritima Cel5a Structures In Complex With
          Cellobiose
 pdb|3AZS|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
          Thermotoga Maritima Cel5a Structures In Complex With
          Mannotriose
 pdb|3AZS|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
          Thermotoga Maritima Cel5a Structures In Complex With
          Mannotriose
 pdb|3AZT|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
          Thermotoga Maritima Cel5a Structures In Complex With
          Cellotetraose
 pdb|3AZT|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
          Thermotoga Maritima Cel5a Structures In Complex With
          Cellotetraose
 pdb|3AZT|C Chain C, Diverse Substrates Recognition Mechanism Revealed By
          Thermotoga Maritima Cel5a Structures In Complex With
          Cellotetraose
 pdb|3AZT|D Chain D, Diverse Substrates Recognition Mechanism Revealed By
          Thermotoga Maritima Cel5a Structures In Complex With
          Cellotetraose
          Length = 317

 Score = 26.2 bits (56), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 26 VDPDRRIKQHNKGKDFGGAHKTSNRGPWDMVL 57
          VDP  R K   +G + G A +  N G W +V+
Sbjct: 3  VDPFERNKILGRGINIGNALEAPNEGDWGVVI 34


>pdb|3DMP|A Chain A, 2.6 A Crystal Structure Of Uracil
           Phosphoribosyltransferase From Burkholderia Pseudomallei
 pdb|3DMP|B Chain B, 2.6 A Crystal Structure Of Uracil
           Phosphoribosyltransferase From Burkholderia Pseudomallei
 pdb|3DMP|C Chain C, 2.6 A Crystal Structure Of Uracil
           Phosphoribosyltransferase From Burkholderia Pseudomallei
 pdb|3DMP|D Chain D, 2.6 A Crystal Structure Of Uracil
           Phosphoribosyltransferase From Burkholderia Pseudomallei
          Length = 217

 Score = 25.8 bits (55), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 11/58 (18%), Positives = 28/58 (48%)

Query: 73  WAWQHPKMSRRLQHVARKKSKETTYTYCLRLLHIMLQTAPWQRLPLTVQWLKPEYQQV 130
           +   HP +  +L H+  K +   T+   LR + +++     + LP+T + ++    ++
Sbjct: 12  FILDHPLIQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPLVEI 69


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.460 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,448,801
Number of Sequences: 62578
Number of extensions: 177817
Number of successful extensions: 366
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 17
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)