Query psy12152
Match_columns 133
No_of_seqs 165 out of 1169
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 20:03:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3005|consensus 100.0 2.9E-34 6.3E-39 232.2 9.3 129 2-131 7-138 (276)
2 COG2827 Predicted endonuclease 100.0 2.3E-31 5.1E-36 187.0 9.2 90 1-117 2-91 (95)
3 PRK00329 GIY-YIG nuclease supe 100.0 1.1E-30 2.4E-35 180.8 11.0 81 1-89 4-84 (86)
4 PF01541 GIY-YIG: GIY-YIG cata 99.3 8.6E-12 1.9E-16 81.8 7.5 68 3-77 1-72 (80)
5 smart00465 GIYc GIY-YIG type n 98.5 5.8E-07 1.3E-11 58.8 7.0 67 4-77 2-72 (84)
6 PF10544 T5orf172: T5orf172 do 97.7 0.00015 3.4E-09 49.1 6.4 64 5-78 2-67 (100)
7 TIGR01453 grpIintron_endo grou 97.6 0.00026 5.7E-09 55.9 7.5 68 4-76 2-76 (214)
8 PRK10545 nucleotide excision r 93.9 0.1 2.2E-06 43.4 4.7 61 4-74 35-97 (286)
9 PHA02598 denA endonuclease II; 93.3 0.13 2.8E-06 38.7 3.9 32 4-39 34-65 (138)
10 PRK12306 uvrC excinuclease ABC 92.5 0.24 5.3E-06 44.2 5.2 67 4-77 11-80 (519)
11 PRK00558 uvrC excinuclease ABC 91.6 0.31 6.8E-06 44.1 4.9 67 4-77 15-84 (598)
12 PRK14667 uvrC excinuclease ABC 91.3 0.36 7.9E-06 43.6 5.0 66 4-77 17-85 (567)
13 PRK07883 hypothetical protein; 91.2 0.49 1.1E-05 42.4 5.7 67 4-77 218-287 (557)
14 TIGR00194 uvrC excinuclease AB 91.2 0.37 7.9E-06 43.6 4.9 66 4-77 12-80 (574)
15 PRK14671 uvrC excinuclease ABC 90.9 0.47 1E-05 43.2 5.4 68 4-77 23-93 (621)
16 PRK14669 uvrC excinuclease ABC 90.8 0.5 1.1E-05 43.2 5.4 68 4-77 14-84 (624)
17 PRK14668 uvrC excinuclease ABC 90.7 0.4 8.6E-06 43.4 4.6 64 4-77 17-83 (577)
18 PRK14666 uvrC excinuclease ABC 90.4 0.53 1.1E-05 43.6 5.3 68 4-77 13-83 (694)
19 PRK14672 uvrC excinuclease ABC 88.8 0.95 2.1E-05 42.0 5.6 66 4-77 22-90 (691)
20 PF13455 MUG113: Meiotically u 85.8 0.48 1E-05 32.3 1.5 16 22-37 3-18 (83)
21 COG0322 UvrC Nuclease subunit 84.0 2.1 4.5E-05 38.9 5.1 64 4-75 16-81 (581)
22 COG3680 Uncharacterized protei 79.5 5 0.00011 32.7 5.3 105 4-122 16-134 (259)
23 PRK14670 uvrC excinuclease ABC 52.6 23 0.0005 32.3 4.4 55 18-77 7-64 (574)
24 PF10977 DUF2797: Protein of u 48.3 56 0.0012 26.4 5.6 56 1-78 68-125 (235)
25 COG3266 DamX Uncharacterized p 36.7 34 0.00073 28.7 2.7 48 22-71 219-266 (292)
26 PF11823 DUF3343: Protein of u 36.0 35 0.00075 22.0 2.2 26 58-83 4-29 (73)
27 PF07935 SSV1_ORF_D-335: ORF D 34.5 28 0.00061 23.5 1.6 30 3-32 16-45 (72)
28 PF07289 DUF1448: Protein of u 32.0 84 0.0018 27.0 4.4 26 6-34 217-242 (339)
29 PF01986 DUF123: Domain of unk 30.6 35 0.00076 24.1 1.7 21 19-39 9-32 (99)
30 PF07177 Neuralized: Neuralize 23.1 1E+02 0.0022 20.1 2.7 23 3-26 44-66 (69)
31 PF08437 Glyco_transf_8C: Glyc 23.1 40 0.00086 21.3 0.7 14 106-119 9-22 (57)
No 1
>KOG3005|consensus
Probab=100.00 E-value=2.9e-34 Score=232.18 Aligned_cols=129 Identities=52% Similarity=0.971 Sum_probs=123.9
Q ss_pred CceEEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHhcCCCCCCccccccCCCeEEEEEEEccCCHHHHHHHHHHHcCCchh
Q psy12152 2 VFHGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSNRGPWDMVLIVYGFPNDISALRFEWAWQHPKMS 81 (133)
Q Consensus 2 ~~~~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn~g~~~gGa~~T~~~~pw~lv~~~e~f~sk~~Al~~E~~iK~~~~s 81 (133)
+||+||+|.|.+|+++|++|||+|.||.|||+||| |.++|||+.|++.+||+||+.+.+||++..||+|||+||++.-+
T Consensus 7 ~Fy~cYlL~s~sp~~r~~~yigst~nP~rRlRqhN-g~~~gga~kt~~~~PWeMv~iV~GFPn~vsALqFEwAWQ~p~~S 85 (276)
T KOG3005|consen 7 GFYCCYLLTSLSPRYKGRTYIGSTVNPSRRLRQHN-GEIKGGAWKTKKRRPWEMVMIVHGFPNKVSALQFEWAWQHPLIS 85 (276)
T ss_pred ceEEEEEEeecCcCcCCceEEeeeCCCchhHHhhC-CcccCcccccCCCCCceEEEEeccCCccchhcchhhhccCcchh
Confidence 58999999999999999999999999999999999 58899999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhcC---CCccHHHHHHHHHHhhcCCCCCCcCcEEEecChhhhhhc
Q psy12152 82 RRLQHVARKKS---KETTYTYCLRLLHIMLQTAPWQRLPLTVQWLKPEYQQVL 131 (133)
Q Consensus 82 rk~~~i~~~~~---~~~~~~~~l~~~~~~l~~~~w~~~~l~v~~~~~~~~~~~ 131 (133)
+.++.+...+. +++.+.+.|+++.+|++.++|.++||++.|+++.++..|
T Consensus 86 ~~~k~~~~~~k~~~~et~F~~~Lr~l~~~~~~~aw~R~pl~~~wl~~~~~~~f 138 (276)
T KOG3005|consen 86 RYLKEKDTRLKSKSIETDFMYRLRILNHVLRSGAWARSPLTIRWLETDLETPF 138 (276)
T ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHHhhhcCCchhcCCccchhcchhhcCCc
Confidence 99999886665 889999999999999999999999999999999999888
No 2
>COG2827 Predicted endonuclease containing a URI domain [DNA replication, recombination, and repair]
Probab=99.97 E-value=2.3e-31 Score=187.03 Aligned_cols=90 Identities=32% Similarity=0.469 Sum_probs=83.6
Q ss_pred CCceEEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHhcCCCCCCccccccCCCeEEEEEEEccCCHHHHHHHHHHHcCCch
Q psy12152 1 MVFHGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSNRGPWDMVLIVYGFPNDISALRFEWAWQHPKM 80 (133)
Q Consensus 1 M~~~~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn~g~~~gGa~~T~~~~pw~lv~~~e~f~sk~~Al~~E~~iK~~~~ 80 (133)
|+.|+||||.|.| |++|||+|+|+.+|+.|||+|+ ||+||++++|..|| |++.|+|+++||++|+.+|+|+|
T Consensus 2 ~~~~~vYil~c~d----gtlY~GvT~D~~rR~~~H~~Gk---gakyT~~~~~~~Lv-~~e~~~~~~~A~~~E~~iK~~~R 73 (95)
T COG2827 2 ANNWYVYILRCAD----GTLYTGVTTDLERRLAEHNSGK---GAKYTRRYGPVRLV-WYEEFDDKSEALRREKRIKKLTR 73 (95)
T ss_pred CcceEEEEEEeCC----CCEEEEecCCHHHHHHHHhccc---ccchhccCCceEEE-EEeecCCHHHHHHHHHHHHHHhH
Confidence 3568999999999 9999999999999999999998 99999999999999 99999999999999999999999
Q ss_pred hhHHHHHhhhcCCCccHHHHHHHHHHhhcCCCCCCcC
Q psy12152 81 SRRLQHVARKKSKETTYTYCLRLLHIMLQTAPWQRLP 117 (133)
Q Consensus 81 srk~~~i~~~~~~~~~~~~~l~~~~~~l~~~~w~~~~ 117 (133)
++| +++|+++ +|.|.++.
T Consensus 74 ~~K-----------------~~LIe~~--~~~~~~l~ 91 (95)
T COG2827 74 KQK-----------------ERLIEEA--NPEWKDLS 91 (95)
T ss_pred HHH-----------------HHHHhcc--Cchhhhhh
Confidence 999 7777777 77877764
No 3
>PRK00329 GIY-YIG nuclease superfamily protein; Validated
Probab=99.97 E-value=1.1e-30 Score=180.75 Aligned_cols=81 Identities=35% Similarity=0.483 Sum_probs=76.3
Q ss_pred CCceEEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHhcCCCCCCccccccCCCeEEEEEEEccCCHHHHHHHHHHHcCCch
Q psy12152 1 MVFHGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSNRGPWDMVLIVYGFPNDISALRFEWAWQHPKM 80 (133)
Q Consensus 1 M~~~~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn~g~~~gGa~~T~~~~pw~lv~~~e~f~sk~~Al~~E~~iK~~~~ 80 (133)
|.+||||||.|.+ |++|||+|+||.+||.|||+|. ||+||++++||.|| |++.|+|+++|+++|++||+|++
T Consensus 4 ~~~~~vYil~~~~----~~~Y~G~T~dl~~Rl~qH~~g~---ga~~tr~~~p~~Lv-~~e~~~~~~~A~~~E~~lK~~~r 75 (86)
T PRK00329 4 MKPWFLYLLRCAD----GSLYTGITTDVERRFAQHQSGK---GAKYTRGRPPLTLV-FVEPVGDRSEALRAEYRFKQLTK 75 (86)
T ss_pred CCceEEEEEEcCC----CCEEEEEcCCHHHHHHHHHcCC---CCCCccCCCceEEE-EEEECCCHHHHHHHHHHHhcCCH
Confidence 4679999999988 8999999999999999999987 89999999999999 89999999999999999999999
Q ss_pred hhHHHHHhh
Q psy12152 81 SRRLQHVAR 89 (133)
Q Consensus 81 srk~~~i~~ 89 (133)
.+|++.|..
T Consensus 76 ~~K~~li~~ 84 (86)
T PRK00329 76 KQKERLVAE 84 (86)
T ss_pred HHHHHHHhc
Confidence 999887754
No 4
>PF01541 GIY-YIG: GIY-YIG catalytic domain; InterPro: IPR000305 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. It is found in the amino terminal region of excinuclease abc subunit c (uvrC), Bacteriophage T4 endonucleases segA, segB, segC, segD and segE; it is also found in putative endonucleases encoded by group I introns of fungi and phage.; GO: 0004518 nuclease activity, 0006281 DNA repair, 0005622 intracellular; PDB: 1YWL_A 1YD6_D 1YD5_A 1YD1_A 1YCZ_A 1YD0_A 1YD3_A 1YD4_A 1YD2_A 1LN0_A ....
Probab=99.32 E-value=8.6e-12 Score=81.83 Aligned_cols=68 Identities=24% Similarity=0.492 Sum_probs=56.6
Q ss_pred ceEEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHhcCCCCCCcccccc----CCCeEEEEEEEccCCHHHHHHHHHHHcC
Q psy12152 3 FHGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSN----RGPWDMVLIVYGFPNDISALRFEWAWQH 77 (133)
Q Consensus 3 ~~~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn~g~~~gGa~~T~~----~~pw~lv~~~e~f~sk~~Al~~E~~iK~ 77 (133)
+++||+|.|.+ .+.+|||.|.|+.+|+.+|..+. ++..+.. ..+++++ +++.+.+..+|+..|..|..
T Consensus 1 k~gIY~i~~~~---~~~~YIG~t~nl~~R~~~H~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~E~~~i~ 72 (80)
T PF01541_consen 1 KYGIYIIYNKD---NKKIYIGSTKNLKKRLNEHFSGN---KSKKKKQKKYGWDNFEFI-IIEEFNTKSEALKLEQYLIK 72 (80)
T ss_dssp -EEEEEEEETT---TEEEEEEEESSHHHHHHHHHHHC---THCSHCHHHHHSSCEEEE-EEEEESSHHHHHHHHHHHHH
T ss_pred CcEEEEEEECC---CCEEEEEEECCHHHHHHHHhcCC---CCCcchhhhcccccEEEE-eeEEeCCHHHHHHHHHHHHH
Confidence 47899999988 46799999999999999998765 3334442 6789999 89999999999999998765
No 5
>smart00465 GIYc GIY-YIG type nucleases (URI domain).
Probab=98.50 E-value=5.8e-07 Score=58.77 Aligned_cols=67 Identities=25% Similarity=0.461 Sum_probs=43.0
Q ss_pred eEEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHhcCCCCCCccccc---cCC-CeEEEEEEEccCCHHHHHHHHHHHcC
Q psy12152 4 HGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTS---NRG-PWDMVLIVYGFPNDISALRFEWAWQH 77 (133)
Q Consensus 4 ~~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn~g~~~gGa~~T~---~~~-pw~lv~~~e~f~sk~~Al~~E~~iK~ 77 (133)
.+||++.+.+ .+.+|||.|.|+.+|+.+|..+..+ +..... .++ ..+.. ..+.+. .. |...|..+.+
T Consensus 2 ~gvY~i~~~~---~~~~YVG~t~nl~~R~~~h~~~~~~-~~~~~~~~~~~~~~f~~~-~~~~~~-~~-~~~~E~~~i~ 72 (84)
T smart00465 2 PGVYYITNKK---NGKLYVGKAKNLRNRLKRHFSGSRK-GRLLIDALLKYGGNFEFI-ILESFD-ES-ALELEKYLIK 72 (84)
T ss_pred CEEEEEEECC---CCEEEEEEccCHHHHHHHHHhCCCC-ChHHHHHHHHhcCCeEEE-EeecCh-Hh-HHHHHHHHHH
Confidence 4799999965 5999999999999999999976531 122222 122 23333 233322 22 8888887654
No 6
>PF10544 T5orf172: T5orf172 domain; InterPro: IPR018306 This entry represents a DNA-binding domain found in bacteriophage T5, ORF172 []. The domain is related to the Bro-N and KilA-N domains that are widespread in large-DNA viruses infecting bacteria and eukaryotes [].
Probab=97.70 E-value=0.00015 Score=49.11 Aligned_cols=64 Identities=23% Similarity=0.362 Sum_probs=44.8
Q ss_pred EEEEeeeCCCCCCCc--EEEEEeCCHHHHHHHHhcCCCCCCccccccCCCeEEEEEEEccCCHHHHHHHHHHHcCC
Q psy12152 5 GVYLLYSRNPRYLGR--TYIGYTVDPDRRIKQHNKGKDFGGAHKTSNRGPWDMVLIVYGFPNDISALRFEWAWQHP 78 (133)
Q Consensus 5 ~vYIL~s~~~~~~~~--~YiG~T~dl~rRl~qHn~g~~~gGa~~T~~~~pw~lv~~~e~f~sk~~Al~~E~~iK~~ 78 (133)
||||+.+..- .+. +=||.|+||.+|+++++.. .+....+++++ +...+.....|-..|..++..
T Consensus 2 yiYi~~~~~~--~~~~~~KIG~T~~~~~Rl~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~E~~ih~~ 67 (100)
T PF10544_consen 2 YIYILTSPSN--PGYNIYKIGYTTNPERRLRELNRN-------STGSPFDFEVI-YEFESVPVPDARKVERLIHRE 67 (100)
T ss_pred EEEEEEecCC--CCceeEEEeeECCHHHHHHHhhcc-------ccCCCCceeEE-EEEEEEecCCHHHHHHHHHHH
Confidence 7999977541 244 8899999999999999942 23334567776 444555555677778887763
No 7
>TIGR01453 grpIintron_endo group I intron endonuclease. This model represents one subfamily of endonucleases containing the endo/excinuclease amino terminal domain, Pfam:PF01541 at its amino end. A distinct subfamily includes excinuclease abc subunit c (uvrC). Members of pfam01541 are often termed GIY-YIG endonucleases after conserved motifs near the amino end. This subfamily in this model is found in open reading frames of group I introns in both phage and mitochondria. The closely related endonucleases of phage T4: segA, segB, segC, segD and segE, score below the trusted cutoff for the family.
Probab=97.62 E-value=0.00026 Score=55.86 Aligned_cols=68 Identities=24% Similarity=0.366 Sum_probs=45.9
Q ss_pred eEEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHhcCCCCCCcc-cc----ccCC--CeEEEEEEEccCCHHHHHHHHHHHc
Q psy12152 4 HGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAH-KT----SNRG--PWDMVLIVYGFPNDISALRFEWAWQ 76 (133)
Q Consensus 4 ~~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn~g~~~gGa~-~T----~~~~--pw~lv~~~e~f~sk~~Al~~E~~iK 76 (133)
-+||++.|.. .|.+|||.|.|+.+|+.+|...... |.. .. ..++ -+++. +.+.+.+..+...+|..|-
T Consensus 2 ~GIY~i~n~~---ngk~YIGss~nl~~R~~~h~~~~~~-~~~~~l~~ai~kyG~~nF~~~-ile~~~~~~~l~~lE~~~I 76 (214)
T TIGR01453 2 SGIYKITNNI---NGKIYVGSSVNLEKRLKEHLKLLKK-GNRIKLQKALNKYGWSNFSFE-ILEYYCNKDDLIERETYYI 76 (214)
T ss_pred CEEEEEEECC---CCcEEEEeccCHHHHHHHHHHHHhc-CChHHHHHHHHHhChHheEEE-EEEEeCCHHHHHHHHHHHH
Confidence 4799999965 4999999999999999999754222 222 11 1233 35555 3454456777778887654
No 8
>PRK10545 nucleotide excision repair endonuclease; Provisional
Probab=93.88 E-value=0.1 Score=43.38 Aligned_cols=61 Identities=25% Similarity=0.263 Sum_probs=42.9
Q ss_pred eEEEEeeeCCCCCCC-c-EEEEEeCCHHHHHHHHhcCCCCCCccccccCCCeEEEEEEEccCCHHHHHHHHHH
Q psy12152 4 HGVYLLYSRNPRYLG-R-TYIGYTVDPDRRIKQHNKGKDFGGAHKTSNRGPWDMVLIVYGFPNDISALRFEWA 74 (133)
Q Consensus 4 ~~vYIL~s~~~~~~~-~-~YiG~T~dl~rRl~qHn~g~~~gGa~~T~~~~pw~lv~~~e~f~sk~~Al~~E~~ 74 (133)
-+||+....+ | . +|||=+.|+.+|+.+|=.+. + -+...+ .-..+- +....+--+|+-.|..
T Consensus 35 PGVYlf~d~~----g~~~LYVGKAknLR~RV~syF~~~-k-~~~m~~--~i~~Ie--~i~T~sEleALLLE~~ 97 (286)
T PRK10545 35 PGVYLFHGES----DTMPLYIGKSVNIRSRVLSHLRTP-D-EAAMLR--QSRRIS--WICTAGEIGALLLEAR 97 (286)
T ss_pred CeEEEEEcCC----CCEEEEEechHhHHHHHHHHcCcH-H-HHHHHH--hcceEE--EEEeCCHHHHHHHHHH
Confidence 4799999887 5 4 89999999999999997432 1 111111 222233 4577889999999966
No 9
>PHA02598 denA endonuclease II; Provisional
Probab=93.27 E-value=0.13 Score=38.67 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=27.4
Q ss_pred eEEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHhcCC
Q psy12152 4 HGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGK 39 (133)
Q Consensus 4 ~~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn~g~ 39 (133)
.+||++...+ ..+|||-+.|+..|+.++-++.
T Consensus 34 n~VY~~~~~~----~viYVGKAknLkkRv~sYf~~~ 65 (138)
T PHA02598 34 NVIYAIAVDD----ELVYIGKTKNLRKRIDYYRNSK 65 (138)
T ss_pred eEEEEEEeCC----eEEEEeehhhHHHHHHHHhCcc
Confidence 5899999544 7999999999999999997653
No 10
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=92.45 E-value=0.24 Score=44.22 Aligned_cols=67 Identities=22% Similarity=0.286 Sum_probs=47.7
Q ss_pred eEEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHhcCCCCCCcccccc--CCCeEEEEEEEccCCHHHHHHHHHH-HcC
Q psy12152 4 HGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSN--RGPWDMVLIVYGFPNDISALRFEWA-WQH 77 (133)
Q Consensus 4 ~~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn~g~~~gGa~~T~~--~~pw~lv~~~e~f~sk~~Al~~E~~-iK~ 77 (133)
-+||++...+ ...+|||=+.|+.+|+.+|=++... . ..|.. ..-..+- +....|..+|+-.|.. ||+
T Consensus 11 PGVYl~~d~~---g~vIYVGKAknLr~RV~sYF~~~~~-~-~K~~~lv~~i~~ie--~ivt~sE~eALlLE~~LIK~ 80 (519)
T PRK12306 11 PGCYLYKDEE---GTIIYVGKAKNLKKRVSSYFQKKDH-D-PKTQSLVKAIRDIE--FIVTDNEVEALLLENTLIKK 80 (519)
T ss_pred CeEEEEECCC---CCEEEeccchhHHHHHHHhCCCCCC-C-hHHHHHHHHhcEEE--EEEeCCHHHHHHHHHHHHHH
Confidence 4899999987 4699999999999999999755311 1 23322 2233343 3467899999999977 444
No 11
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=91.59 E-value=0.31 Score=44.12 Aligned_cols=67 Identities=19% Similarity=0.168 Sum_probs=47.0
Q ss_pred eEEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHhcCCCCCCcccccc--CCCeEEEEEEEccCCHHHHHHHHHH-HcC
Q psy12152 4 HGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSN--RGPWDMVLIVYGFPNDISALRFEWA-WQH 77 (133)
Q Consensus 4 ~~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn~g~~~gGa~~T~~--~~pw~lv~~~e~f~sk~~Al~~E~~-iK~ 77 (133)
-+||++...+ ...+|||=+.|+.+|+.+|=++... ...|.. ..-..+- +....|..+|+-.|.. ||+
T Consensus 15 PGVY~~~d~~---g~viYVGKAknLr~Rv~sYF~~~~~--~~k~~~lv~~i~~ie--~i~t~sE~eALlLE~~LIK~ 84 (598)
T PRK00558 15 PGVYRMKDAN---GTVIYVGKAKNLKNRVRSYFRKSHD--SPKTRAMVSEIADIE--YIVTRSETEALLLENNLIKK 84 (598)
T ss_pred CeEEEEECCC---CCEEEecCchhHHHHHHhhCCCCCc--ChHHHHHHHhcCeEE--EEEeCCHHHHHHHHHHHHHH
Confidence 5899999977 4699999999999999999654311 123332 1223333 3467789999999977 444
No 12
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=91.28 E-value=0.36 Score=43.58 Aligned_cols=66 Identities=26% Similarity=0.274 Sum_probs=46.0
Q ss_pred eEEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHhcCCCCCCcccccc--CCCeEEEEEEEccCCHHHHHHHHHH-HcC
Q psy12152 4 HGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSN--RGPWDMVLIVYGFPNDISALRFEWA-WQH 77 (133)
Q Consensus 4 ~~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn~g~~~gGa~~T~~--~~pw~lv~~~e~f~sk~~Al~~E~~-iK~ 77 (133)
-+||+.. .+ ...+|||=+.|+.+|+.+|=++... + ..|.. ..-..+- +....|..+|+-.|.. ||+
T Consensus 17 PGVYl~~-~~---g~viYVGKAknLr~RV~sYF~~~~~-~-~K~~~lv~~i~~ie--~i~t~sE~EALlLE~~LIK~ 85 (567)
T PRK14667 17 PGVYLFK-KK---KRYIYIGKAKNIKNRLLQHYKQSET-D-PKERAIFSESSSLE--WIITRNEYEALVLEIDLIQQ 85 (567)
T ss_pred CeEEEEe-cC---CeEEEeeCcHhHHHHHHHHcCCCCC-C-hHHHHHHHhhCeEE--EEEeCCHHHHHHHHHHHHHH
Confidence 4799999 66 3589999999999999999754311 1 23332 1223333 3467899999999977 454
No 13
>PRK07883 hypothetical protein; Validated
Probab=91.22 E-value=0.49 Score=42.45 Aligned_cols=67 Identities=16% Similarity=0.131 Sum_probs=47.1
Q ss_pred eEEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHhcCCCCCCcccccc--CCCeEEEEEEEccCCHHHHHHHHHH-HcC
Q psy12152 4 HGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSN--RGPWDMVLIVYGFPNDISALRFEWA-WQH 77 (133)
Q Consensus 4 ~~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn~g~~~gGa~~T~~--~~pw~lv~~~e~f~sk~~Al~~E~~-iK~ 77 (133)
-+||++...+ ...+|||-+.|+.+|+.+|=.+... . ..|.. ..-..+- +....|..+|+-.|.. ||+
T Consensus 218 PGVY~~~d~~---g~viYVGKAknLr~Rv~sYF~~~~~-~-~k~~~lv~~i~~ie--~i~t~sE~eAllLE~~lIk~ 287 (557)
T PRK07883 218 PGVYLFRGPS---GEVLYVGTAVNLRRRVRSYFTAAET-R-GRMREMVALAERVD--HVECAHALEAEVRELRLIAA 287 (557)
T ss_pred ceEEEEECCC---CcEEEeehhhhHHHHHHHHcCCCCC-C-chHHHHHhhhceEE--EEEeCCHHHHHHHHHHHHHH
Confidence 4799999987 4699999999999999999654211 1 12332 1223333 3467899999999985 554
No 14
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=91.16 E-value=0.37 Score=43.59 Aligned_cols=66 Identities=23% Similarity=0.262 Sum_probs=46.7
Q ss_pred eEEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHhcCCCCCCcccccc--CCCeEEEEEEEccCCHHHHHHHHHH-HcC
Q psy12152 4 HGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSN--RGPWDMVLIVYGFPNDISALRFEWA-WQH 77 (133)
Q Consensus 4 ~~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn~g~~~gGa~~T~~--~~pw~lv~~~e~f~sk~~Al~~E~~-iK~ 77 (133)
-+||++.+.+ ...+|||-+.|+.+|+.+|=.+.. ...|.. ..-..+- +....|..+|+-.|.. ||+
T Consensus 12 PGVYl~~d~~---g~viYVGKAknLr~Rv~sYF~~~~---~~K~~~mv~~i~~ie--~ivt~sE~eALlLE~~lIK~ 80 (574)
T TIGR00194 12 PGCYLMKDRN---GQVLYVGKAKNLKKRVSSYFRENN---SAKTQALVKQIADIE--YILTKNENEALILEANLIKQ 80 (574)
T ss_pred CeEEEEECCC---CCEEEEecHHHHHHHHHHhcCCCC---CchHHHHHHhcCeEE--EEEeCCHHHHHHHHHHHHHH
Confidence 4799999987 469999999999999999975431 123432 1223333 3467789999999977 444
No 15
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=90.93 E-value=0.47 Score=43.25 Aligned_cols=68 Identities=19% Similarity=0.148 Sum_probs=47.1
Q ss_pred eEEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHhcCCCCCCcccccc--CCCeEEEEEEEccCCHHHHHHHHHH-HcC
Q psy12152 4 HGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSN--RGPWDMVLIVYGFPNDISALRFEWA-WQH 77 (133)
Q Consensus 4 ~~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn~g~~~gGa~~T~~--~~pw~lv~~~e~f~sk~~Al~~E~~-iK~ 77 (133)
-+||++...+ ...+|||=+.|+.+|+.+|=.+... ....|.. ..-..+- +....|..+|+-.|.. ||+
T Consensus 23 PGVYl~~d~~---g~viYVGKAknLr~RV~sYF~~~~~-~~~K~~~lv~~i~~ie--~i~t~sE~EALlLE~~LIk~ 93 (621)
T PRK14671 23 PGVYQFKNAA---GRVIYVGKAKNLRNRVRSYFRNSRQ-LSGKTLVLVGHIADLE--VIITSSEVEALILENNLIKE 93 (621)
T ss_pred CeEEEEECCC---CCEEEeecchhHHHHHHHHcCCCCC-CChHHHHHHHhhceEE--EEEeCCHHHHHHHHHHHHHH
Confidence 4799999987 4699999999999999999653210 0112322 2234444 3466899999999977 444
No 16
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=90.76 E-value=0.5 Score=43.18 Aligned_cols=68 Identities=24% Similarity=0.277 Sum_probs=47.2
Q ss_pred eEEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHhcCCCCCCcccccc--CCCeEEEEEEEccCCHHHHHHHHHH-HcC
Q psy12152 4 HGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSN--RGPWDMVLIVYGFPNDISALRFEWA-WQH 77 (133)
Q Consensus 4 ~~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn~g~~~gGa~~T~~--~~pw~lv~~~e~f~sk~~Al~~E~~-iK~ 77 (133)
-+||++...+ ...+|||=+.|+.+|+.+|=.+... ....|.. ..-.++- +....|..||+-.|.. ||+
T Consensus 14 PGVYl~~d~~---g~viYVGKAknLr~RV~sYF~~~~~-~~~K~~~lv~~i~~ie--~i~t~sE~EALlLE~~LIk~ 84 (624)
T PRK14669 14 PGVYLYKNAG---GEVIYVGKAKNLRSRVRSYFSEDKL-GNIKTGSLIREAVDID--YILVDNEKEALALENNLIKQ 84 (624)
T ss_pred CeEEEEECCC---CCEEEeeCchhHHHHHHHHhccCcc-CChHHHHHHHhhceEE--EEEeCCHHHHHHHHHHHHhh
Confidence 4899999887 3689999999999999999653210 0123332 2233443 3478899999999977 444
No 17
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=90.65 E-value=0.4 Score=43.39 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=45.3
Q ss_pred eEEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHhcCCCCCCcccccc--CCCeEEEEEEEccCCHHHHHHHHHH-HcC
Q psy12152 4 HGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSN--RGPWDMVLIVYGFPNDISALRFEWA-WQH 77 (133)
Q Consensus 4 ~~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn~g~~~gGa~~T~~--~~pw~lv~~~e~f~sk~~Al~~E~~-iK~ 77 (133)
-+||+... + ...+|||=+.|+.+|+.+|-.+. + ..|.. ..-..+- +....|..+|+-.|.. ||+
T Consensus 17 PGVYl~~d-~---g~viYVGKAknLr~RV~sYF~~~---~-~k~~~lv~~i~~ie--~i~t~sE~eALlLE~~LIK~ 83 (577)
T PRK14668 17 PGVYQFVA-G---GTVLYVGKAVDLRDRVRSYADPR---S-ERIRRMVERADDID--FAVTDTETQALLLEANLIKR 83 (577)
T ss_pred CEEEEEcC-C---CeEEEeeCcHhHHHHHHHHcCCC---C-hHHHHHHHhhCeEE--EEEeCCHHHHHHHHHHHHHH
Confidence 47999986 4 26999999999999999997532 1 13332 2233333 3467899999999977 454
No 18
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=90.44 E-value=0.53 Score=43.59 Aligned_cols=68 Identities=21% Similarity=0.179 Sum_probs=47.8
Q ss_pred eEEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHhcCCCCCCcccccc--CCCeEEEEEEEccCCHHHHHHHHHH-HcC
Q psy12152 4 HGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSN--RGPWDMVLIVYGFPNDISALRFEWA-WQH 77 (133)
Q Consensus 4 ~~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn~g~~~gGa~~T~~--~~pw~lv~~~e~f~sk~~Al~~E~~-iK~ 77 (133)
-+||++...+ ...+|||=+.|+.+|+.+|=++... -...|.. ..-..+- +....|..+|+-.|.. ||+
T Consensus 13 PGVYlfkD~~---G~VIYVGKAKNLR~RV~SYF~~~~~-~~~K~~~Lv~~i~~Ie--~ivT~sE~EALLLE~~LIK~ 83 (694)
T PRK14666 13 PGVYLYKDEA---GRIIYVGKARHLRRRVASYFRDVSA-LTPKTVAMLRHAVTID--TLSTTTEKEALLLEASLIKK 83 (694)
T ss_pred CeEEEEECCC---CCEEEeeCcHhHHHHHHHHcCCCCC-CChHHHHHHHhcCeeE--EEEeCCHHHHHHHHHHHHHH
Confidence 4799999987 4699999999999999999754210 0122322 2334443 4578899999999977 554
No 19
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=88.82 E-value=0.95 Score=41.95 Aligned_cols=66 Identities=18% Similarity=0.156 Sum_probs=47.1
Q ss_pred eEEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHhcCCCCCCcccccc--CCCeEEEEEEEccCCHHHHHHHHHH-HcC
Q psy12152 4 HGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSN--RGPWDMVLIVYGFPNDISALRFEWA-WQH 77 (133)
Q Consensus 4 ~~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn~g~~~gGa~~T~~--~~pw~lv~~~e~f~sk~~Al~~E~~-iK~ 77 (133)
-+||++...+ ...+|||=+.|+.+|+.+|=.+.. ...|+. ..-..+- +....|..+|+-.|.. ||+
T Consensus 22 PGVYlfkd~~---G~VLYVGKAKNLR~RV~SYF~~~~---~~K~~~Lv~~i~~Ie--~ivT~sE~EALLLE~~LIK~ 90 (691)
T PRK14672 22 SGVYLWKDVH---GVVIYVGKAKSLRTRLTSYFRCRH---DPKTRVLMSRAAALE--YLQTQHEYEALLLENTLIKK 90 (691)
T ss_pred CeEEEEECCC---CCEEEeeCcHHHHHHHHHHcCCCC---CchHHHHHHhhCcEE--EEEeCCHHHHHHHHHHHHHH
Confidence 4799999987 358999999999999999975421 123332 2334444 3477899999999977 444
No 20
>PF13455 MUG113: Meiotically up-regulated gene 113
Probab=85.79 E-value=0.48 Score=32.34 Aligned_cols=16 Identities=38% Similarity=0.686 Sum_probs=14.9
Q ss_pred EEEeCCHHHHHHHHhc
Q psy12152 22 IGYTVDPDRRIKQHNK 37 (133)
Q Consensus 22 iG~T~dl~rRl~qHn~ 37 (133)
||.|+||.+|+.|.+.
T Consensus 3 IGrt~nv~rRl~qW~~ 18 (83)
T PF13455_consen 3 IGRTTNVERRLNQWSR 18 (83)
T ss_pred ccccCCHHHHHHHHHH
Confidence 8999999999999874
No 21
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=84.00 E-value=2.1 Score=38.94 Aligned_cols=64 Identities=23% Similarity=0.261 Sum_probs=46.7
Q ss_pred eEEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHhcCCCCCCcccccc--CCCeEEEEEEEccCCHHHHHHHHHHH
Q psy12152 4 HGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSN--RGPWDMVLIVYGFPNDISALRFEWAW 75 (133)
Q Consensus 4 ~~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn~g~~~gGa~~T~~--~~pw~lv~~~e~f~sk~~Al~~E~~i 75 (133)
-+||+....+ ...+|||=..|+.+|+.++-.|.. ...|.. ...-.+- +-...+-.|||-.|..+
T Consensus 16 PGvY~~~d~~---g~VlYVGKAknLr~Rv~sYF~~~~---~~kt~~lv~~i~~iE--~ivt~~E~EALlLE~nL 81 (581)
T COG0322 16 PGVYLMKDEN---GTVLYVGKAKNLRKRVSSYFRGRL---DPKTAALVENIADIE--YIVTDTETEALLLENNL 81 (581)
T ss_pred CeeEEEECCC---CCEEEEeehhhHHHHHHHhhcCCC---cHHHHHHHHhhccee--EEEeCCHHHHHHHHHhH
Confidence 4799999988 579999999999999999976652 223332 2333333 22567899999999874
No 22
>COG3680 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.49 E-value=5 Score=32.70 Aligned_cols=105 Identities=15% Similarity=0.192 Sum_probs=60.4
Q ss_pred eEEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHhcCCCCCCc---c-----------ccccCCCeEEEEEEEccCCHHHHH
Q psy12152 4 HGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGA---H-----------KTSNRGPWDMVLIVYGFPNDISAL 69 (133)
Q Consensus 4 ~~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn~g~~~gGa---~-----------~T~~~~pw~lv~~~e~f~sk~~Al 69 (133)
||||+|..... ...+|||--. ..|+-+|--+....+- - .-...-|--++ ..++.++...|+
T Consensus 16 ~YVY~l~Dpr~--~~ifYVGKG~--GnRVf~H~~~~sa~~d~~~~~srKlk~i~e~r~agl~iih~i-~~hgl~dEktay 90 (259)
T COG3680 16 FYVYCLTDPRK--DKIFYVGKGC--GNRVFEHEWVASASQDSGEIISRKLKAISECRKAGLYIIHLI-EVHGLADEKTAY 90 (259)
T ss_pred eEEEEEecCCC--CcEEEEecCC--ccchHHhhhhhhcccccchHHHHHHHHHHHHHHcCCeeeeee-hhhcCcchhHHH
Confidence 89999998652 3689999654 4688888733211000 0 00111234344 577888888888
Q ss_pred HHHHHHcCCchhhHHHHHhhhcCCCccHHHHHHHHHHhhcCCCCCCcCcEEEe
Q psy12152 70 RFEWAWQHPKMSRRLQHVARKKSKETTYTYCLRLLHIMLQTAPWQRLPLTVQW 122 (133)
Q Consensus 70 ~~E~~iK~~~~srk~~~i~~~~~~~~~~~~~l~~~~~~l~~~~w~~~~l~v~~ 122 (133)
+.|-++-... --+..-...-+++.+.-+-+.++ +|.. +|++|.+
T Consensus 91 ~~eaa~id~~-----pgl~nv~~g~~s~~fg~~~l~El--~~~y--~p~aI~~ 134 (259)
T COG3680 91 KLEAAIIDHG-----PGLINVEEGDRSFGFGSLPLNEL--NPDY--LPLAIKI 134 (259)
T ss_pred HHHHHHhhcC-----CchhhhhhcccccccccccHHHh--Cccc--CCceEEe
Confidence 7776643211 00011123345666666778888 8887 7777764
No 23
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=52.58 E-value=23 Score=32.25 Aligned_cols=55 Identities=24% Similarity=0.201 Sum_probs=38.4
Q ss_pred CcEEEEEeCCHHHHHHHHhcCCCCCCcccccc--CCCeEEEEEEEccCCHHHHHHHHHH-HcC
Q psy12152 18 GRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSN--RGPWDMVLIVYGFPNDISALRFEWA-WQH 77 (133)
Q Consensus 18 ~~~YiG~T~dl~rRl~qHn~g~~~gGa~~T~~--~~pw~lv~~~e~f~sk~~Al~~E~~-iK~ 77 (133)
..+|||=+.|+.+|+.+|=.+.. ...|.. ..-.++- +....|..||+-.|.. ||+
T Consensus 7 ~vIYVGKAknLr~RV~sYF~~~~---~~K~~~lv~~i~~ie--~ivt~sE~EALlLE~~LIK~ 64 (574)
T PRK14670 7 KILYIGKAKNLRSRVKNYFLEKI---SHKTKILMKNVKNIE--VITTNSEYEALLLECNLIKT 64 (574)
T ss_pred CEEEeeCcHhHHHHHHHHcCCCC---CchHHHHHHhcCeEE--EEEeCCHHHHHHHHHHHHHH
Confidence 68999999999999999975321 123332 2334443 3467899999999977 444
No 24
>PF10977 DUF2797: Protein of unknown function (DUF2797); InterPro: IPR021246 This family of proteins has no known function.
Probab=48.32 E-value=56 Score=26.43 Aligned_cols=56 Identities=30% Similarity=0.298 Sum_probs=41.8
Q ss_pred CCceEEEEeeeCCCCCCCcEEEEEeCC--HHHHHHHHhcCCCCCCccccccCCCeEEEEEEEccCCHHHHHHHHHHHcCC
Q psy12152 1 MVFHGVYLLYSRNPRYLGRTYIGYTVD--PDRRIKQHNKGKDFGGAHKTSNRGPWDMVLIVYGFPNDISALRFEWAWQHP 78 (133)
Q Consensus 1 M~~~~vYIL~s~~~~~~~~~YiG~T~d--l~rRl~qHn~g~~~gGa~~T~~~~pw~lv~~~e~f~sk~~Al~~E~~iK~~ 78 (133)
|..|+|||. + .+.+=||+|.. ...|+.+- |... .+.+..+++.-.|-..|-.++..
T Consensus 68 ~~pH~VYLA---~---~s~vKVGITr~~r~~tRw~EQ--GA~~--------------A~~i~~v~~r~~Ar~iE~~l~~~ 125 (235)
T PF10977_consen 68 MQPHIVYLA---N---SSGVKVGITREWRVPTRWIEQ--GAVQ--------------ALPIARVPNRYAARRIEVALKEH 125 (235)
T ss_pred CCCeEEEEE---C---CCCceEEecCCCCCcchHhhc--Cccc--------------EEEEEEeCCHHHHHHHHHHHHhh
Confidence 456899999 3 26799999984 78888762 3321 12456899999999999999885
No 25
>COG3266 DamX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.71 E-value=34 Score=28.74 Aligned_cols=48 Identities=19% Similarity=0.149 Sum_probs=35.3
Q ss_pred EEEeCCHHHHHHHHhcCCCCCCccccccCCCeEEEEEEEccCCHHHHHHH
Q psy12152 22 IGYTVDPDRRIKQHNKGKDFGGAHKTSNRGPWDMVLIVYGFPNDISALRF 71 (133)
Q Consensus 22 iG~T~dl~rRl~qHn~g~~~gGa~~T~~~~pw~lv~~~e~f~sk~~Al~~ 71 (133)
+|.-.|+..=+++||.+... --..|+...||-+| .+-.|+++.+|.+.
T Consensus 219 ~~s~~nv~~fa~k~~l~~~~-vy~t~rnG~pWYvv-~~G~YatrqeA~~A 266 (292)
T COG3266 219 SGSYDNVNGFAKKQNLKGYV-VYETTRNGKPWYVV-VYGNYATRQEAKAA 266 (292)
T ss_pred ccchHHHHHHHHhcCCCceE-EeEeecCCceeEEE-EecCcccHHHHHHH
Confidence 35567899999999864321 11346777899999 68899999999753
No 26
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=36.02 E-value=35 Score=22.02 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=20.1
Q ss_pred EEEccCCHHHHHHHHHHHcCCchhhH
Q psy12152 58 IVYGFPNDISALRFEWAWQHPKMSRR 83 (133)
Q Consensus 58 ~~e~f~sk~~Al~~E~~iK~~~~srk 83 (133)
++-.|+|-.+|++.|+.+|.-.-.-+
T Consensus 4 ~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 4 YLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 34589999999999999988544333
No 27
>PF07935 SSV1_ORF_D-335: ORF D-335-like protein; InterPro: IPR012922 The sequences featured in this family are similar to a probable integrase (P20214 from SWISSPROT) expressed by the SSV1 virus of the archaeon Sulfolobus shibatae. This protein may be necessary for the integration of the virus into the host genome by a process of site-specific recombination [].
Probab=34.48 E-value=28 Score=23.45 Aligned_cols=30 Identities=20% Similarity=0.019 Sum_probs=21.4
Q ss_pred ceEEEEeeeCCCCCCCcEEEEEeCCHHHHH
Q psy12152 3 FHGVYLLYSRNPRYLGRTYIGYTVDPDRRI 32 (133)
Q Consensus 3 ~~~vYIL~s~~~~~~~~~YiG~T~dl~rRl 32 (133)
.||||.|...+.......|||.=.|+..-.
T Consensus 16 kYYVY~iE~~~~G~~re~YVGpL~~VVe~Y 45 (72)
T PF07935_consen 16 KYYVYKIEKDINGERRETYVGPLDDVVETY 45 (72)
T ss_pred eEEEEEEEeccCCceeeeeeccHHHHHHHH
Confidence 589999999442334589999877765543
No 28
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=31.98 E-value=84 Score=27.01 Aligned_cols=26 Identities=27% Similarity=0.598 Sum_probs=21.0
Q ss_pred EEEeeeCCCCCCCcEEEEEeCCHHHHHHH
Q psy12152 6 VYLLYSRNPRYLGRTYIGYTVDPDRRIKQ 34 (133)
Q Consensus 6 vYIL~s~~~~~~~~~YiG~T~dl~rRl~q 34 (133)
+.|-.++. .|.+..|+..||..||++
T Consensus 217 LVieT~~~---sGgYVLGFRvDP~ErL~~ 242 (339)
T PF07289_consen 217 LVIETSES---SGGYVLGFRVDPEERLQE 242 (339)
T ss_pred EEEEEecc---CCcEEEEEEcCHHHHHHH
Confidence 44555555 599999999999999987
No 29
>PF01986 DUF123: Domain of unknown function DUF123; InterPro: IPR002837 This archaebacterial domain has no known function. In Methanocaldococcus jannaschii (Methanococcus jannaschii) it occurs with an endonuclease domain IPR003265 from INTERPRO.
Probab=30.60 E-value=35 Score=24.11 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=17.2
Q ss_pred cEEEEEeC---CHHHHHHHHhcCC
Q psy12152 19 RTYIGYTV---DPDRRIKQHNKGK 39 (133)
Q Consensus 19 ~~YiG~T~---dl~rRl~qHn~g~ 39 (133)
-+|||+.- ++..||..|-...
T Consensus 9 Y~YvGSA~G~~gL~~Ri~RHl~~~ 32 (99)
T PF01986_consen 9 YVYVGSAMGPGGLRSRISRHLRRS 32 (99)
T ss_pred EEEEecCCCCCCChHHHHHHhhhh
Confidence 57999886 6899999997643
No 30
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=23.09 E-value=1e+02 Score=20.05 Aligned_cols=23 Identities=22% Similarity=0.119 Sum_probs=14.4
Q ss_pred ceEEEEeeeCCCCCCCcEEEEEeC
Q psy12152 3 FHGVYLLYSRNPRYLGRTYIGYTV 26 (133)
Q Consensus 3 ~~~vYIL~s~~~~~~~~~YiG~T~ 26 (133)
.+.|-|..... ...|.+-+|+|+
T Consensus 44 ~~~v~I~~~~~-~wsG~L~~GvT~ 66 (69)
T PF07177_consen 44 KFEVRIDEVEP-SWSGSLRIGVTS 66 (69)
T ss_dssp EEEEEEEEE-S-SSSS--EEEEES
T ss_pred EEEEEEEecCC-CceeEEEEeeEc
Confidence 45677766653 457999999998
No 31
>PF08437 Glyco_transf_8C: Glycosyl transferase family 8 C-terminal; InterPro: IPR013645 This domain is found at the C terminus of bacterial glucosyltransferase and galactosyltransferase proteins. ; GO: 0008918 lipopolysaccharide 3-alpha-galactosyltransferase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=23.08 E-value=40 Score=21.31 Aligned_cols=14 Identities=29% Similarity=0.866 Sum_probs=11.3
Q ss_pred HhhcCCCCCCcCcE
Q psy12152 106 IMLQTAPWQRLPLT 119 (133)
Q Consensus 106 ~~l~~~~w~~~~l~ 119 (133)
...+++||.+.||-
T Consensus 9 ~a~~~SPWk~~pl~ 22 (57)
T PF08437_consen 9 KAYKNSPWKDIPLL 22 (57)
T ss_pred HHHHcCCCCCCCCc
Confidence 44568999999995
Done!