Query psy12152
Match_columns 133
No_of_seqs 165 out of 1169
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 20:04:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zg2_A Hypothetical UPF0213 pr 100.0 2.3E-33 7.9E-38 200.3 6.7 95 2-123 6-100 (107)
2 1ywl_A Hypothetical UPF0213 pr 100.0 5.4E-32 1.9E-36 189.9 8.6 80 2-89 5-86 (96)
3 1mk0_A Intron-associated endon 97.8 4.3E-05 1.5E-09 52.2 5.4 70 1-77 1-80 (97)
4 1yd6_A UVRC; DNA binding prote 97.3 0.00038 1.3E-08 48.2 5.1 63 4-74 16-80 (99)
5 1yd0_A Uvrabc system protein C 97.0 0.00067 2.3E-08 46.7 4.4 61 4-74 16-78 (96)
6 2wsh_A Endonuclease II; GIY-YI 91.2 0.25 8.7E-06 36.2 4.4 28 5-36 42-69 (143)
7 1ylx_A Hypothetical protein AP 24.1 51 0.0018 22.6 2.5 46 18-70 42-98 (103)
8 1wiz_A DNA-binding protein SAT 16.5 63 0.0021 22.0 1.7 15 102-116 50-66 (101)
9 2lfv_A Protein DAMX; cell divi 20.0 33 0.0011 23.2 0.0 46 26-73 37-82 (106)
10 2jya_A AGR_C_3324P, uncharacte 11.6 2.5E+02 0.0086 19.1 3.6 25 46-72 44-68 (106)
No 1
>1zg2_A Hypothetical UPF0213 protein BH0048; BHR2, structure, autostructure, northeast structural genomics consortium, PSI; NMR {Bacillus halodurans}
Probab=99.98 E-value=2.3e-33 Score=200.27 Aligned_cols=95 Identities=36% Similarity=0.653 Sum_probs=83.6
Q ss_pred CceEEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHhcCCCCCCccccccCCCeEEEEEEEccCCHHHHHHHHHHHcCCchh
Q psy12152 2 VFHGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSNRGPWDMVLIVYGFPNDISALRFEWAWQHPKMS 81 (133)
Q Consensus 2 ~~~~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn~g~~~gGa~~T~~~~pw~lv~~~e~f~sk~~Al~~E~~iK~~~~s 81 (133)
.+||||||.|.+ |++|||+|+||.+||+|||+|. ||+||++++||+|| |+|.|+|+++|+++|++||+|+|+
T Consensus 6 ~~~~VYIL~~~~----g~lY~G~T~dl~rRl~qH~~g~---ga~~T~~~~p~~LV-y~e~f~~~~~Al~rE~~iK~~~R~ 77 (107)
T 1zg2_A 6 MNHYVYILECKD----GSWYTGYTTDVDRRIKKHASGK---GAKYTRGRGPFRLV-ATWAFPSKEEAMRWEYEVKHLSRR 77 (107)
T ss_dssp CCEEEEEEECTT----SCEEEEEECCHHHHHHHHHHHT---TCCSCCCCSSCEEE-EEEEESCHHHHHHHHHHHHHSCHH
T ss_pred CceEEEEEEcCC----CCEEEEEECCHHHHHHHHHccC---CCCccccCCCCEEE-EEEecCCHHHHHHHHHHHhcCCHH
Confidence 358999999977 9999999999999999999986 89999999999999 899999999999999999999999
Q ss_pred hHHHHHhhhcCCCccHHHHHHHHHHhhcCCCCCCcCcEEEec
Q psy12152 82 RRLQHVARKKSKETTYTYCLRLLHIMLQTAPWQRLPLTVQWL 123 (133)
Q Consensus 82 rk~~~i~~~~~~~~~~~~~l~~~~~~l~~~~w~~~~l~v~~~ 123 (133)
+| +++|... +|.|.+|.-.+..+
T Consensus 78 ~K-----------------~~LI~~~--n~~~~dL~~~~~~~ 100 (107)
T 1zg2_A 78 KK-----------------EQLVSLK--GGPYENTTKLSTTL 100 (107)
T ss_dssp HH-----------------HHHHHHT--TCHHHHCCCTTCC-
T ss_pred HH-----------------HHHHHhc--CCchHHHHHHHHHH
Confidence 99 6666666 77777766554433
No 2
>1ywl_A Hypothetical UPF0213 protein EF2693; alpha and beta, structural genomics, northeast structural genomics consortium (NESG); NMR {Enterococcus faecalis}
Probab=99.97 E-value=5.4e-32 Score=189.90 Aligned_cols=80 Identities=31% Similarity=0.476 Sum_probs=74.7
Q ss_pred CceEEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHhcCCCCCCccccc--cCCCeEEEEEEEccCCHHHHHHHHHHHcCCc
Q psy12152 2 VFHGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTS--NRGPWDMVLIVYGFPNDISALRFEWAWQHPK 79 (133)
Q Consensus 2 ~~~~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn~g~~~gGa~~T~--~~~pw~lv~~~e~f~sk~~Al~~E~~iK~~~ 79 (133)
.+||||||.|.+ |++|||+|+||.+||.|||+|. ||+||+ +++||+|| |+|.|+|+++|+++|++||+|+
T Consensus 5 ~~~~vYIL~~~~----g~lY~G~T~dl~rRl~qHn~g~---ga~~T~~~~~~p~~LV-y~e~f~~~~~Al~rE~~iK~~~ 76 (96)
T 1ywl_A 5 KSHYFYVLLCQD----GSFYGGYTTEPERRLTEHNSGT---GAKYTRLAKRRPVIMI-HTEKFETRSEATKAEAAFKKLT 76 (96)
T ss_dssp SSEEEEEEECTT----CCCEEEEESCHHHHHHHHHHHH---SCSSCSSCCSSCCEEE-EEEEESSHHHHHHHHHHHHHSC
T ss_pred CceEEEEEEcCC----CCEEEEEeCCHHHHHHHHHcCC---CCCcccccCCCCeEEE-EEEecCCHHHHHHHHHHHHcCC
Confidence 468999999977 9999999999999999999986 899999 99999999 8999999999999999999999
Q ss_pred hhhHHHHHhh
Q psy12152 80 MSRRLQHVAR 89 (133)
Q Consensus 80 ~srk~~~i~~ 89 (133)
|++|++.|..
T Consensus 77 R~~K~~LI~~ 86 (96)
T 1ywl_A 77 RKQKEQYLKT 86 (96)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999776643
No 3
>1mk0_A Intron-associated endonuclease 1; alpha/beta fold, catalytic domain, DNA-binding surface, hydrolase; HET: CIT; 1.60A {Enterobacteria phage T4} SCOP: d.226.1.1 PDB: 1ln0_A
Probab=97.76 E-value=4.3e-05 Score=52.18 Aligned_cols=70 Identities=21% Similarity=0.330 Sum_probs=47.5
Q ss_pred CCceEEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHhc----CCCCCCccccc----cC-CCeEEEEEEEccCC-HHHHHH
Q psy12152 1 MVFHGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNK----GKDFGGAHKTS----NR-GPWDMVLIVYGFPN-DISALR 70 (133)
Q Consensus 1 M~~~~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn~----g~~~gGa~~T~----~~-~pw~lv~~~e~f~s-k~~Al~ 70 (133)
|.+ +||.+.|.. .|.+|||.|.|+..|+.+|.. |.. +.+.-. .+ .-..+. +.|.++. ..+...
T Consensus 1 mk~-GIY~I~n~~---ngk~YIGst~~l~~R~~~~~~~l~~g~~--~n~~L~~a~~kyG~~F~~~-iLe~~~~~~~el~~ 73 (97)
T 1mk0_A 1 MKS-GIYQIKNTL---NNKVYVGSAKDFEKRWKRHFKDLEKGCH--SSIKLQRSFNKHGNVFECS-ILEEIPYEKDLIIE 73 (97)
T ss_dssp CCC-EEEEEEETT---TCCEEEEEESSHHHHHHHHHHHHHHTCC--SCHHHHHHHHHHSSCEEEE-EEEECCCCHHHHHH
T ss_pred Cce-EEEEEEECC---CCCEEEEecCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHhcCcceEEE-EeeECCCCHHHHHH
Confidence 554 799999986 599999999999999999953 321 111111 11 235555 4666774 678888
Q ss_pred HHHHHcC
Q psy12152 71 FEWAWQH 77 (133)
Q Consensus 71 ~E~~iK~ 77 (133)
+|..|..
T Consensus 74 ~E~~~i~ 80 (97)
T 1mk0_A 74 RANFWIK 80 (97)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887654
No 4
>1yd6_A UVRC; DNA binding protein; 2.00A {Bacillus caldotenax}
Probab=97.28 E-value=0.00038 Score=48.17 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=45.0
Q ss_pred eEEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHhcCCCCCCcccccc--CCCeEEEEEEEccCCHHHHHHHHHH
Q psy12152 4 HGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSN--RGPWDMVLIVYGFPNDISALRFEWA 74 (133)
Q Consensus 4 ~~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn~g~~~gGa~~T~~--~~pw~lv~~~e~f~sk~~Al~~E~~ 74 (133)
-+||++...+ ...+|||-+.|+.+|+.+|-.+. . ...++. ..-..+- +....|..+|+-.|..
T Consensus 16 pGVY~~~d~~---g~vlYVGKAknLr~Rv~syf~~~-~--~~k~~~m~~~~~~i~--~~~t~sE~eAlllE~~ 80 (99)
T 1yd6_A 16 PGCYLMKDKH---GTVIYVGKAKSLKERVRSYFTGT-H--DGKTQRLVEEIADFE--YIVTSSNAEALILEMN 80 (99)
T ss_dssp CEEEEEECSS---CCEEEEEEESCHHHHHHGGGSSC-C--CHHHHHHHHHCSEEE--EEECSSHHHHHHHHHH
T ss_pred CeEEEEEcCC---CCEEEEecCcCHHHHHHHHcccC-C--ChHHHHHHHheeEEE--EEEECCHHHHHHHHHH
Confidence 5899999987 46899999999999999997553 1 112221 1122333 3467899999999976
No 5
>1yd0_A Uvrabc system protein C; DNA binding protein; 1.50A {Thermotoga maritima} PDB: 1ycz_A 1yd1_A 1yd4_A 1yd3_A 1yd2_A 1yd5_A
Probab=97.05 E-value=0.00067 Score=46.71 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=43.7
Q ss_pred eEEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHhcCCCCCCcccccc--CCCeEEEEEEEccCCHHHHHHHHHH
Q psy12152 4 HGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSN--RGPWDMVLIVYGFPNDISALRFEWA 74 (133)
Q Consensus 4 ~~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn~g~~~gGa~~T~~--~~pw~lv~~~e~f~sk~~Al~~E~~ 74 (133)
-+||++.. + ...+|||-+.|+.+|+.+|-.+. ...++. ..-..+- +....|..+|+-.|..
T Consensus 16 pGVY~~~d-~---g~vlYVGKAknLr~Rv~syf~~~----~~k~~~~~~~~~~i~--~~~t~sE~eAlllE~~ 78 (96)
T 1yd0_A 16 PGVYIFKN-K---GVPIYIGKAKRLSNRLRSYLNPQ----TEKVFRIGEEADELE--TIVVMNEREAFILEAN 78 (96)
T ss_dssp CEEEEEEE-T---TEEEEEEEESSHHHHHHGGGSCS----SHHHHHHHHHCSEEE--EEECSSHHHHHHHHHH
T ss_pred CeEEEEEC-C---CeEEEEecCcCHHHHHHHHccCC----CHHHHHHHHhccEEE--EEEECCHHHHHHHHHH
Confidence 58999999 6 35899999999999999997653 112221 1122333 3467899999999976
No 6
>2wsh_A Endonuclease II; GIY-YIG, hydrolase; 1.90A {Enterobacteria phage T4}
Probab=91.19 E-value=0.25 Score=36.23 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=24.6
Q ss_pred EEEEeeeCCCCCCCcEEEEEeCCHHHHHHHHh
Q psy12152 5 GVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHN 36 (133)
Q Consensus 5 ~vYIL~s~~~~~~~~~YiG~T~dl~rRl~qHn 36 (133)
+||+....+ ..+|||-+.||.+|+++.-
T Consensus 42 GVY~~~~~g----~ViYVGKAknLkkRv~sYf 69 (143)
T 2wsh_A 42 VIYAIAIND----ELVYIGKTKNLRKRINYYR 69 (143)
T ss_dssp EEEEEEETT----EEEEEEEESCHHHHHHHHH
T ss_pred eEEEEEcCC----eEEEEEecccHhHHHHHhc
Confidence 599999744 7999999999999999984
No 7
>1ylx_A Hypothetical protein APC35702; dimer, structural genomics, PSI, protein structure initiative; 1.60A {Geobacillus stearothermophilus} SCOP: d.82.5.1
Probab=24.09 E-value=51 Score=22.56 Aligned_cols=46 Identities=26% Similarity=0.520 Sum_probs=26.0
Q ss_pred CcEEEEEeCCHHHHH--------HHHhcCCCCCCccccccCCCeEEEE---EEEccCCHHHHHH
Q psy12152 18 GRTYIGYTVDPDRRI--------KQHNKGKDFGGAHKTSNRGPWDMVL---IVYGFPNDISALR 70 (133)
Q Consensus 18 ~~~YiG~T~dl~rRl--------~qHn~g~~~gGa~~T~~~~pw~lv~---~~e~f~sk~~Al~ 70 (133)
+++|+|+|.+-+-+. ++|+ | +.+-...-|.+-- =..+|.|..+||+
T Consensus 42 n~YY~GYTVkKdd~~~~ih~Pfikded-G------~La~ekqeWTi~~d~~e~~Gy~sle~Al~ 98 (103)
T 1ylx_A 42 NRYYVGYTINKDDEMITIHMPFVKNER-G------ELALEKQEWTVRKDGREKKGFHSLQEAME 98 (103)
T ss_dssp TEEEEEEEEEETTEEEEEEEEEEECTT-S------CEEECCSCEEEEETTEEEEEECSHHHHHH
T ss_pred ceEEEEEEEccCCeEEEEeccceecCC-C------ceeeecceeEEecCCccccchhhHHHHHH
Confidence 899999998744332 2222 2 1333344454420 1357888888864
No 8
>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=16.54 E-value=63 Score=22.00 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.8
Q ss_pred HHHHHhhcCC--CCCCc
Q psy12152 102 RLLHIMLQTA--PWQRL 116 (133)
Q Consensus 102 ~~~~~~l~~~--~w~~~ 116 (133)
..+..+|++| ||..+
T Consensus 50 gtLs~lLr~P~kPW~~L 66 (101)
T 1wiz_A 50 GLLSEILRKEEDPRTAS 66 (101)
T ss_dssp HHHHHHHHTCCCTTTCC
T ss_pred hHHHHHHcCCCCCHHHH
Confidence 4688899999 99987
No 9
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=19.98 E-value=33 Score=23.25 Aligned_cols=46 Identities=15% Similarity=0.116 Sum_probs=27.8
Q ss_pred CCHHHHHHHHhcCCCCCCccccccCCCeEEEEEEEccCCHHHHHHHHH
Q psy12152 26 VDPDRRIKQHNKGKDFGGAHKTSNRGPWDMVLIVYGFPNDISALRFEW 73 (133)
Q Consensus 26 ~dl~rRl~qHn~g~~~gGa~~T~~~~pw~lv~~~e~f~sk~~Al~~E~ 73 (133)
.++..-+++|...... -.+..+...||-+| .+..|+|+++|.+.-.
T Consensus 37 ~~l~~f~~~~~l~~~~-v~~t~rnGk~WyvV-lyG~Y~s~~~A~~A~~ 82 (106)
T 2lfv_A 37 DNLNGWAKKENLKNYV-VYETTRNGQPWYVL-VSGVYASKEEAKKAVS 82 (106)
Confidence 3566667777532111 00112234699998 6889999999975443
No 10
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=11.56 E-value=2.5e+02 Score=19.07 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=19.3
Q ss_pred ccccCCCeEEEEEEEccCCHHHHHHHH
Q psy12152 46 KTSNRGPWDMVLIVYGFPNDISALRFE 72 (133)
Q Consensus 46 ~T~~~~pw~lv~~~e~f~sk~~Al~~E 72 (133)
+|....|..=| .-.|+|+++|+.+=
T Consensus 44 WtsS~D~~~qv--~L~F~skE~AiayA 68 (106)
T 2jya_A 44 YTSSSDMKQQV--KLTFETQEQAEAYA 68 (106)
T ss_dssp SCSCCCSEEEE--EEEESSHHHHHHHH
T ss_pred cCCCCCccccc--eEecCCHHHHHHHH
Confidence 77777777655 45899999999863
Done!