Your job contains 1 sequence.
>psy12152
MVFHGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSNRGPWDMVLIVY
GFPNDISALRFEWAWQHPKMSRRLQHVARKKSKETTYTYCLRLLHIMLQTAPWQRLPLTV
QWLKPEYQQVLTE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy12152
(133 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
RGD|1311568 - symbol:Slx1b "SLX1 structure-specific endon... 445 5.2e-42 1
MGI|MGI:1915220 - symbol:Slx1b "SLX1 structure-specific e... 438 2.8e-41 1
UNIPROTKB|Q32PI0 - symbol:SLX1A "Structure-specific endon... 436 4.6e-41 1
UNIPROTKB|Q9BQ83 - symbol:SLX1A "Structure-specific endon... 427 4.2e-40 1
FB|FBgn0037263 - symbol:slx1 "nuclease slx1" species:7227... 401 2.4e-37 1
WB|WBGene00018909 - symbol:slx-1 species:6239 "Caenorhabd... 350 6.0e-32 1
TAIR|locus:2065775 - symbol:AT2G30350 species:3702 "Arabi... 298 1.9e-26 1
POMBASE|SPAP27G11.15 - symbol:slx1 "structure-specific en... 267 3.8e-23 1
CGD|CAL0003774 - symbol:orf19.972 species:5476 "Candida a... 223 1.7e-18 1
ASPGD|ASPL0000015291 - symbol:AN8212 species:162425 "Emer... 198 3.5e-17 2
SGD|S000000432 - symbol:SLX1 "Endonuclease involved in DN... 202 2.9e-16 1
TAIR|locus:2169273 - symbol:AT5G43210 species:3702 "Arabi... 119 1.8e-07 1
>RGD|1311568 [details] [associations]
symbol:Slx1b "SLX1 structure-specific endonuclease subunit
homolog B (S. cerevisiae)" species:10116 "Rattus norvegicus"
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA;ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008821 "crossover junction endodeoxyribonuclease
activity" evidence=ISO] [GO:0010792 "DNA double-strand break
processing involved in repair via single-strand annealing"
evidence=ISO] [GO:0017108 "5'-flap endonuclease activity"
evidence=ISO] [GO:0033557 "Slx1-Slx4 complex" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000305
RGD:1311568 Pfam:PF01541 GO:GO:0005634 GO:GO:0046872 GO:GO:0006281
GO:GO:0006310 GO:GO:0090305 GO:GO:0004519 SMART:SM00465
PROSITE:PS50164 KO:K15078 eggNOG:NOG296745
GeneTree:ENSGT00390000013368 HOGENOM:HOG000008012 OMA:GRIYIGF
HAMAP:MF_03100 HSSP:Q9KGL3 CTD:79008 EMBL:BC087090 IPI:IPI00515761
RefSeq:NP_001009292.1 UniGene:Rn.30339 ProteinModelPortal:Q5PQP5
STRING:Q5PQP5 Ensembl:ENSRNOT00000026231 GeneID:293489
KEGG:rno:293489 UCSC:RGD:1311568 InParanoid:Q5PQP5 NextBio:636218
ArrayExpress:Q5PQP5 Genevestigator:Q5PQP5 Uniprot:Q5PQP5
Length = 271
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 76/129 (58%), Positives = 102/129 (79%)
Query: 3 FHGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSNRGPWDMVLIVYGF 62
F GVYLLY +NPR+ GR Y+G+TV+P RR++QHN G+ GGA +TS RGPWDMVLI++GF
Sbjct: 10 FFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLILHGF 69
Query: 63 PNDISALRFEWAWQHPKMSRRLQHVARKKSKETTYTYCLRLLHIMLQTAPWQRLPLTVQW 122
P+ ++ALRFEWAWQHP+ SRRL HV + E ++T+ LR+L ML+ PW RLPLTV+W
Sbjct: 70 PSAVAALRFEWAWQHPQASRRLTHVGPRLRSEASFTFHLRVLAHMLRVPPWVRLPLTVRW 129
Query: 123 LKPEYQQVL 131
L+P+++ L
Sbjct: 130 LRPDFRHEL 138
>MGI|MGI:1915220 [details] [associations]
symbol:Slx1b "SLX1 structure-specific endonuclease subunit
homolog B (S. cerevisiae)" species:10090 "Mus musculus" [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISO] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0008821 "crossover
junction endodeoxyribonuclease activity" evidence=ISO] [GO:0010792
"DNA double-strand break processing involved in repair via
single-strand annealing" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=ISO] [GO:0033557 "Slx1-Slx4 complex" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000305
MGI:MGI:1915220 Pfam:PF01541 GO:GO:0005634 GO:GO:0046872
GO:GO:0006281 GO:GO:0006310 GO:GO:0090305 GO:GO:0004519
SMART:SM00465 PROSITE:PS50164 KO:K15078 eggNOG:NOG296745
GeneTree:ENSGT00390000013368 HOGENOM:HOG000008012 OMA:GRIYIGF
OrthoDB:EOG4Z62P9 HAMAP:MF_03100 HSSP:Q9KGL3 CTD:79008
EMBL:AK014753 EMBL:AK049139 EMBL:BC145688 IPI:IPI00226433
IPI:IPI00556913 RefSeq:NP_083696.2 UniGene:Mm.280573
ProteinModelPortal:Q8BX32 SMR:Q8BX32 STRING:Q8BX32 PRIDE:Q8BX32
Ensembl:ENSMUST00000144897 GeneID:75764 KEGG:mmu:75764
UCSC:uc009jsh.2 InParanoid:Q8BX32 NextBio:343884 Bgee:Q8BX32
Genevestigator:Q8BX32 Uniprot:Q8BX32
Length = 270
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 74/129 (57%), Positives = 100/129 (77%)
Query: 3 FHGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSNRGPWDMVLIVYGF 62
F GVYLLY +NPR+ GR Y+G+TV+P RR++QHN G+ GGA +TS RGPWDMVLI++GF
Sbjct: 10 FFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLIIHGF 69
Query: 63 PNDISALRFEWAWQHPKMSRRLQHVARKKSKETTYTYCLRLLHIMLQTAPWQRLPLTVQW 122
P+ ++ALRFEWAWQHP+ SRRL HV + E + + LR+L ML+ PW RLPLT++W
Sbjct: 70 PSAVAALRFEWAWQHPQASRRLTHVGPRLRSEAAFAFHLRVLAHMLRVPPWVRLPLTLRW 129
Query: 123 LKPEYQQVL 131
L+P+++ L
Sbjct: 130 LRPDFRHEL 138
>UNIPROTKB|Q32PI0 [details] [associations]
symbol:SLX1A "Structure-specific endonuclease subunit SLX1"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR000305 Pfam:PF01541 GO:GO:0005634 GO:GO:0046872
GO:GO:0006281 GO:GO:0006310 GO:GO:0090305 GO:GO:0004519
SMART:SM00465 PROSITE:PS50164 KO:K15078 EMBL:BC108108
IPI:IPI00698447 RefSeq:NP_001032533.1 UniGene:Bt.62766
ProteinModelPortal:Q32PI0 STRING:Q32PI0 PRIDE:Q32PI0
Ensembl:ENSBTAT00000011384 GeneID:510858 KEGG:bta:510858 CTD:548593
eggNOG:NOG296745 GeneTree:ENSGT00390000013368 HOGENOM:HOG000008012
InParanoid:Q32PI0 OMA:GRIYIGF OrthoDB:EOG4Z62P9 NextBio:20869653
HAMAP:MF_03100 Uniprot:Q32PI0
Length = 267
Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
Identities = 76/129 (58%), Positives = 101/129 (78%)
Query: 3 FHGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSNRGPWDMVLIVYGF 62
F GVYLLY NPR+ GR Y+G+TV+P RR++QHN G+ GGA +TS RGPW+MVLIV+GF
Sbjct: 6 FFGVYLLYCLNPRHRGRVYVGFTVNPARRVQQHNGGRKKGGAWRTSGRGPWEMVLIVHGF 65
Query: 63 PNDISALRFEWAWQHPKMSRRLQHVARKKSKETTYTYCLRLLHIMLQTAPWQRLPLTVQW 122
P+ ++ALRFEWAWQHP+ SRRL HV R+ E T+ + LR+L ML+ PW RLPLT++W
Sbjct: 66 PSAVAALRFEWAWQHPQASRRLTHVGRRLRGEATFAFHLRVLAHMLRAPPWVRLPLTLRW 125
Query: 123 LKPEYQQVL 131
L+ +++Q L
Sbjct: 126 LRADFRQDL 134
>UNIPROTKB|Q9BQ83 [details] [associations]
symbol:SLX1A "Structure-specific endonuclease subunit SLX1"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IDA] [GO:0008821 "crossover junction endodeoxyribonuclease
activity" evidence=IDA] [GO:0010792 "DNA double-strand break
processing involved in repair via single-strand annealing"
evidence=IMP] [GO:0006281 "DNA repair" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0033557 "Slx1-Slx4 complex"
evidence=IDA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IMP] InterPro:IPR000305
Pfam:PF01541 GO:GO:0046872 GO:GO:0000724 GO:GO:0017108
GO:GO:0008821 PROSITE:PS50164 GO:GO:0010792 KO:K15078 CTD:548593
eggNOG:NOG296745 HOGENOM:HOG000008012 OMA:GRIYIGF OrthoDB:EOG4Z62P9
HAMAP:MF_03100 HSSP:Q9KGL3 GO:GO:0033557 EMBL:AC106782
EMBL:AC133555 EMBL:BC000754 EMBL:BC000803 EMBL:BC015990
EMBL:BC019306 EMBL:BC069007 EMBL:BC130545 EMBL:BC130547
EMBL:BC144462 IPI:IPI00031535 IPI:IPI00376968 RefSeq:NP_001014999.1
RefSeq:NP_001015000.1 RefSeq:NP_076949.1 RefSeq:NP_835145.1
UniGene:Hs.728161 UniGene:Hs.729791 ProteinModelPortal:Q9BQ83
SMR:Q9BQ83 IntAct:Q9BQ83 STRING:Q9BQ83 PRIDE:Q9BQ83 DNASU:548593
DNASU:79008 Ensembl:ENST00000251303 Ensembl:ENST00000330181
Ensembl:ENST00000345535 Ensembl:ENST00000351581 GeneID:548593
GeneID:79008 KEGG:hsa:548593 KEGG:hsa:79008 UCSC:uc002dsx.3
UCSC:uc002dsy.3 CTD:79008 GeneCards:GC16P029471
GeneCards:GC16P030208 HGNC:HGNC:20922 HGNC:HGNC:28748 HPA:HPA047038
neXtProt:NX_Q9BQ83 PharmGKB:PA142671738 InParanoid:Q9BQ83
NextBio:112282 ArrayExpress:Q9BQ83 Bgee:Q9BQ83
Genevestigator:Q9BQ83 Uniprot:Q9BQ83
Length = 275
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 74/129 (57%), Positives = 98/129 (75%)
Query: 3 FHGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSNRGPWDMVLIVYGF 62
F GVYLLY NPRY GR Y+G+TV+ RR++QHN G+ GGA +TS RGPW+MVL+V+GF
Sbjct: 13 FFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGRGPWEMVLVVHGF 72
Query: 63 PNDISALRFEWAWQHPKMSRRLQHVARKKSKETTYTYCLRLLHIMLQTAPWQRLPLTVQW 122
P+ ++ALRFEWAWQHP SRRL HV + ET + + LR+L ML+ PW RLPLT++W
Sbjct: 73 PSSVAALRFEWAWQHPHASRRLAHVGPRLRGETAFAFHLRVLAHMLRAPPWARLPLTLRW 132
Query: 123 LKPEYQQVL 131
++P+ +Q L
Sbjct: 133 VRPDLRQDL 141
>FB|FBgn0037263 [details] [associations]
symbol:slx1 "nuclease slx1" species:7227 "Drosophila
melanogaster" [GO:0033557 "Slx1-Slx4 complex" evidence=ISS]
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007095 "mitotic G2
DNA damage checkpoint" evidence=IMP] InterPro:IPR000305
Pfam:PF01541 EMBL:AE014297 GO:GO:0007095 GO:GO:0046872
GO:GO:0006281 GO:GO:0006310 GO:GO:0090305 GO:GO:0004519
SMART:SM00465 PROSITE:PS50164 KO:K15078 UniGene:Dm.1060
eggNOG:NOG296745 GeneTree:ENSGT00390000013368 OMA:GRIYIGF
HAMAP:MF_03100 EMBL:BT029079 RefSeq:NP_649484.3
ProteinModelPortal:Q9VN41 SMR:Q9VN41 IntAct:Q9VN41 MINT:MINT-285941
STRING:Q9VN41 EnsemblMetazoa:FBtr0301296 GeneID:40578
KEGG:dme:Dmel_CG18271 UCSC:CG18271-RA CTD:40578 FlyBase:FBgn0037263
InParanoid:Q9VN41 OrthoDB:EOG4G4F6C PhylomeDB:Q9VN41
GenomeRNAi:40578 NextBio:819482 Bgee:Q9VN41 GO:GO:0033557
Uniprot:Q9VN41
Length = 297
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 74/132 (56%), Positives = 98/132 (74%)
Query: 3 FHGVYLLYSRN--PRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSNRGPWDMVLIVY 60
F+GVYLL S++ PRY G+ Y+G+TV+P RRI+QHN G DFGGA KTS +GPW MV+IV+
Sbjct: 23 FYGVYLLCSQSLDPRYRGKCYVGFTVNPKRRIRQHNLGCDFGGARKTSRKGPWLMVMIVH 82
Query: 61 GFPNDISALRFEWAWQHPKMSRRLQ---HVARKKSKETTYTYCLRLLHIMLQTAPWQRLP 117
GFPN+ AL+FEWAWQ P +S RL+ + RK +ET + Y R+L ML PW RLP
Sbjct: 83 GFPNNTVALQFEWAWQQPSLSTRLKMYPELKRKLPRETFFDYNFRILSNMLGVGPWNRLP 142
Query: 118 LTVQWLKPEYQQ 129
LTV+WL+ +Y++
Sbjct: 143 LTVRWLETDYER 154
>WB|WBGene00018909 [details] [associations]
symbol:slx-1 species:6239 "Caenorhabditis elegans"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] InterPro:IPR001841 InterPro:IPR001965
SMART:SM00184 SMART:SM00249 InterPro:IPR000305 Pfam:PF01541
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0046872 GO:GO:0008270 GO:GO:0006281 GO:GO:0006310
GO:GO:0090305 GO:GO:0004519 SMART:SM00465 PROSITE:PS50164 KO:K15078
eggNOG:NOG296745 GeneTree:ENSGT00390000013368 HAMAP:MF_03100
EMBL:FO080752 PIR:T29147 RefSeq:NP_491541.1 HSSP:Q9KGL3
ProteinModelPortal:P91351 SMR:P91351 STRING:P91351 PaxDb:P91351
EnsemblMetazoa:F56A3.2 GeneID:172157 KEGG:cel:CELE_F56A3.2
UCSC:F56A3.2 CTD:172157 WormBase:F56A3.2 InParanoid:P91351
OMA:SHFHSKC NextBio:874259 Uniprot:P91351
Length = 443
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 66/124 (53%), Positives = 89/124 (71%)
Query: 3 FHGVYLLYSRNPR--YLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSNRGPWDMVLIVY 60
F+GVY L SR+ R Y R YIGYTVDP+RRI QHN G+D GGA KT +RGPWDMV +V+
Sbjct: 172 FYGVYCLISRSDRPCYKNRCYIGYTVDPNRRIMQHNGGRDKGGAKKTDSRGPWDMVCVVH 231
Query: 61 GFPNDISALRFEWAWQHPKMSRRLQHVA-RKKSKETTYTYCLRLLHIMLQTAPWQRLPLT 119
GFPN ++AL FEWAWQ+P +S+ L+ RK+ KET + + LR+ ++ ++ + R LT
Sbjct: 232 GFPNHVAALHFEWAWQNPLVSKSLKEKQLRKERKETPFAFQLRIACELMNSSAFCRFALT 291
Query: 120 VQWL 123
+WL
Sbjct: 292 FRWL 295
>TAIR|locus:2065775 [details] [associations]
symbol:AT2G30350 species:3702 "Arabidopsis thaliana"
[GO:0004518 "nuclease activity" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA;ISS]
InterPro:IPR000305 Pfam:PF01541 EMBL:CP002685
GenomeReviews:CT485783_GR SMART:SM00465 KO:K15078 eggNOG:NOG296745
EMBL:BT023449 EMBL:AK175389 EMBL:AK175393 EMBL:AK176607
IPI:IPI00530173 RefSeq:NP_180594.2 UniGene:At.12243
ProteinModelPortal:Q682H4 SMR:Q682H4 IntAct:Q682H4
EnsemblPlants:AT2G30350.2 GeneID:817585 KEGG:ath:AT2G30350
TAIR:At2g30350 HOGENOM:HOG000242211 InParanoid:Q682H4 OMA:GAWRTKK
PhylomeDB:Q682H4 ProtClustDB:CLSN2681180 Genevestigator:Q682H4
Uniprot:Q682H4
Length = 368
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 56/125 (44%), Positives = 80/125 (64%)
Query: 3 FHGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSNRGPWDMVLIVYGF 62
F YLL S +PR+ G+TYIG+TV+P RRI+QHN G+ GA +T + PW+MVL +YGF
Sbjct: 27 FFACYLLTSLSPRHKGQTYIGFTVNPRRRIRQHN-GEITSGAWRTKKKRPWEMVLCIYGF 85
Query: 63 PNDISALRFEWAWQHPKMSRRLQHVARKKSKETTYTYCLRLLHIMLQTAPWQRLPLTVQW 122
P ++SAL+FEWAWQHP+ S ++ A + ++L++ ML W L LTV +
Sbjct: 86 PTNVSALQFEWAWQHPRESVAVREAAAAFKSFSGVASKIKLVYTMLNLPAWNSLNLTVNY 145
Query: 123 LKPEY 127
+Y
Sbjct: 146 FSSKY 150
>POMBASE|SPAP27G11.15 [details] [associations]
symbol:slx1 "structure-specific endonuclease catalytic
subunit" species:4896 "Schizosaccharomyces pombe" [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016894 "endonuclease activity, active with either ribo- or
deoxyribonucleic acids and producing 3'-phosphomonoesters"
evidence=IDA] [GO:0030874 "nucleolar chromatin" evidence=IDA]
[GO:0030875 "rDNA protrusion" evidence=NAS] [GO:0033557 "Slx1-Slx4
complex" evidence=IDA] [GO:0034065 "replication fork processing at
rDNA locus" evidence=TAS] [GO:0043007 "maintenance of rDNA"
evidence=IMP] [GO:0045458 "recombination within rDNA repeats"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000305 PomBase:SPAP27G11.15 Pfam:PF01541 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0000724
SUPFAM:SSF82771 PROSITE:PS50164 KO:K15078 GO:GO:0034065
GO:GO:0030875 eggNOG:NOG296745 OMA:GRIYIGF HAMAP:MF_03100
GO:GO:0033557 OrthoDB:EOG46DQCD RefSeq:NP_593420.1
ProteinModelPortal:Q9P7M3 STRING:Q9P7M3 EnsemblFungi:SPAP27G11.15.1
GeneID:2541657 KEGG:spo:SPAP27G11.15 NextBio:20802750 GO:GO:0016894
GO:GO:0045458 Uniprot:Q9P7M3
Length = 271
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 52/121 (42%), Positives = 74/121 (61%)
Query: 3 FHGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSNRGPWDMVLIVYGF 62
F+ YLL S + G YIG T DP RR++QHN G+ GGA KT + PW + +VYGF
Sbjct: 6 FYCCYLLKSNRTQSSGAVYIGSTPDPPRRLRQHN-GEIVGGASKTKHGRPWSISCLVYGF 64
Query: 63 PNDISALRFEWAWQHPKMSRRLQHVARKKSKETTYTYCLRLLHIMLQTAPWQRLPLTVQW 122
PN +SAL+FEW WQ+ +SR + + K+ T YCL+ L ++ + W+R PL + +
Sbjct: 65 PNKVSALKFEWNWQNLGISRYTKDCDFRSKKQKTIMYCLKGLKHLVDSDTWRRWPLNITF 124
Query: 123 L 123
L
Sbjct: 125 L 125
>CGD|CAL0003774 [details] [associations]
symbol:orf19.972 species:5476 "Candida albicans" [GO:0033557
"Slx1-Slx4 complex" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] InterPro:IPR000305 CGD:CAL0003774
Pfam:PF01541 EMBL:AACQ01000063 EMBL:AACQ01000062 SUPFAM:SSF82771
KO:K15078 eggNOG:NOG296745 HOGENOM:HOG000248775 RefSeq:XP_716810.1
RefSeq:XP_716870.1 ProteinModelPortal:Q5A4X4 STRING:Q5A4X4
GeneID:3641500 GeneID:3641564 KEGG:cal:CaO19.8587
KEGG:cal:CaO19.972 Uniprot:Q5A4X4
Length = 286
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 52/134 (38%), Positives = 77/134 (57%)
Query: 3 FHGVYLLYS-RNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSNRG--PWDMVLIV 59
F+GVY+L S PR TYIG T DP RR++QHN GGA++T G PW+MV++V
Sbjct: 16 FYGVYILKSIPKPR---STYIGSTPDPKRRLRQHNGDLKVGGAYRTKKDGSRPWNMVVLV 72
Query: 60 YGFPNDISALRFEWAWQHPKMSRRLQHVARKKSKETTYTYCLRLLHIMLQTAPWQRLPLT 119
YGFP+ I+AL+FE + QH +R + + AR S + +L +I L T + ++ L
Sbjct: 73 YGFPSRIAALQFEHSLQHAYQTRHIDNDARITSSSRQSSIHSKLANIRLLTTSFDKMSLK 132
Query: 120 VQWLKPEYQQVLTE 133
+ E ++ E
Sbjct: 133 IAIFDEEVYRMWIE 146
>ASPGD|ASPL0000015291 [details] [associations]
symbol:AN8212 species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0033557 "Slx1-Slx4 complex"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IEA] InterPro:IPR001841 SMART:SM00184 InterPro:IPR000305
Pfam:PF01541 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0006281 EMBL:BN001302 GO:GO:0006310 GO:GO:0090305
GO:GO:0004519 PROSITE:PS50164 KO:K15078 eggNOG:NOG296745
HAMAP:MF_03100 EMBL:AACD01000143 RefSeq:XP_681481.1
ProteinModelPortal:Q5AU18 EnsemblFungi:CADANIAT00004259
GeneID:2869256 KEGG:ani:AN8212.2 HOGENOM:HOG000160050 OMA:PLMMKEL
OrthoDB:EOG46DQCD Uniprot:Q5AU18
Length = 409
Score = 198 (74.8 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 40/79 (50%), Positives = 53/79 (67%)
Query: 21 YIGYTVDPDRRIKQHNKGKDFGGAHKTSN--RGPWDMVLIVYGFPNDISALRFEWAWQHP 78
YIG T DP RR+ QHN G GGA +T++ R PW+MV++V GF + I+AL+FEWAWQHP
Sbjct: 11 YIGSTPDPARRLAQHN-GLCKGGARRTADEKRRPWEMVMVVEGFMSKIAALQFEWAWQHP 69
Query: 79 KMSRRLQHVARKKSKETTY 97
+R L A K + T+
Sbjct: 70 AATRHLTADAPSKEQSKTH 88
Score = 38 (18.4 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 104 LHIMLQTAPWQRLPLTVQWLKPEYQQ 129
LH++L++ ++ PL++++ + Q
Sbjct: 144 LHLLLRSTYFKEWPLSLRFFAADVSQ 169
>SGD|S000000432 [details] [associations]
symbol:SLX1 "Endonuclease involved in DNA recombination and
repair" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IC] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IEA] [GO:0017108
"5'-flap endonuclease activity" evidence=IDA] [GO:0006261
"DNA-dependent DNA replication" evidence=IGI] [GO:0033557
"Slx1-Slx4 complex" evidence=IPI] InterPro:IPR000305 SGD:S000000432
Pfam:PF01541 GO:GO:0046872 GO:GO:0006281 EMBL:BK006936
GO:GO:0006261 GO:GO:0006310 GO:GO:0017108 SMART:SM00465
PROSITE:PS50164 RefSeq:NP_009787.3 GeneID:852529 KEGG:sce:YBR228W
KO:K15078 eggNOG:NOG296745 GeneTree:ENSGT00390000013368
HAMAP:MF_03100 GO:GO:0033557 OrthoDB:EOG46DQCD EMBL:Z36097
PIR:S46104 RefSeq:NP_009790.3 ProteinModelPortal:P38324 SMR:P38324
DIP:DIP-1770N IntAct:P38324 MINT:MINT-402886 STRING:P38324
EnsemblFungi:YBR228W GeneID:852532 KEGG:sce:YBR231C CYGD:YBR228w
HOGENOM:HOG000248775 OMA:CYLLQSI NextBio:971577
Genevestigator:P38324 GermOnline:YBR228W Uniprot:P38324
Length = 304
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 47/124 (37%), Positives = 73/124 (58%)
Query: 3 FHGVYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSNRG--PWDMVLIVY 60
F+ YLL S N R Y+G T +P RR++QHN GGA++T G PW+M++IV
Sbjct: 13 FYCCYLLQSINKRQ--SFYVGSTPNPVRRLRQHNGKLAVGGAYRTKRDGSRPWEMIMIVR 70
Query: 61 GFPNDISALRFEWAWQHPKMSRRL---QHVARKKSKETTYTYCLRLLHIMLQTAPWQRLP 117
GFP+ I+AL+FE AWQH + + V + K+ T + + L+ ++L+ +QR+
Sbjct: 71 GFPSKIAALQFEHAWQHGYQTHYIAEKDRVVKHKAGGRTLHHKVALMKLLLKHEFFQRMN 130
Query: 118 LTVQ 121
L V+
Sbjct: 131 LIVE 134
>TAIR|locus:2169273 [details] [associations]
symbol:AT5G43210 species:3702 "Arabidopsis thaliana"
[GO:0004518 "nuclease activity" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA;ISS]
InterPro:IPR000305 Pfam:PF01541 EMBL:CP002688
GenomeReviews:BA000015_GR EMBL:AB017070 KO:K15078 IPI:IPI00532723
RefSeq:NP_199135.1 UniGene:At.30130 ProteinModelPortal:Q9FHS4
SMR:Q9FHS4 IntAct:Q9FHS4 EnsemblPlants:AT5G43210.1 GeneID:834339
KEGG:ath:AT5G43210 TAIR:At5g43210 eggNOG:NOG281567
HOGENOM:HOG000006185 InParanoid:Q9FHS4 OMA:ANRSEAC PhylomeDB:Q9FHS4
ProtClustDB:CLSN2686803 Genevestigator:Q9FHS4 Uniprot:Q9FHS4
Length = 170
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 37/100 (37%), Positives = 51/100 (51%)
Query: 6 VYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSNRGPWDMVLIVYGFPND 65
VYL+ S +TY+G T D RR+KQHN G+ GGA +S PW I+ GF
Sbjct: 56 VYLILSTTEPI--KTYVGITTDFSRRLKQHN-GEIRGGAKASSAGRPWLCACIITGFTCL 112
Query: 66 ISALRFEWAWQHPKMSRRLQHVARKKSKETTYTYCLRLLH 105
A FE W+ +R+L RKK ++ + + L L H
Sbjct: 113 SQASSFESKWKI--FTRKLPR--RKKDEDMSQSDAL-LQH 147
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.138 0.460 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 133 133 0.00091 102 3 11 22 0.37 31
30 0.43 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 579 (62 KB)
Total size of DFA: 160 KB (2095 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:05
No. of threads or processors used: 24
Search cpu time: 12.35u 0.08s 12.43t Elapsed: 00:00:25
Total cpu time: 12.35u 0.08s 12.43t Elapsed: 00:00:31
Start: Thu Aug 15 11:27:33 2013 End: Thu Aug 15 11:28:04 2013