RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12152
(133 letters)
>1zg2_A Hypothetical UPF0213 protein BH0048; BHR2, structure,
autostructure, northeast structural genomics
consortium, PSI; NMR {Bacillus halodurans}
Length = 107
Score = 57.7 bits (140), Expect = 3e-12
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 6 VYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAHKTSNRGPWDMVLIVYGFPND 65
VY+L ++ G Y GYT D DRRIK+H GK GA T RGP+ +V + FP+
Sbjct: 10 VYILECKD----GSWYTGYTTDVDRRIKKHASGK---GAKYTRGRGPFRLVA-TWAFPSK 61
Query: 66 ISALRFEWAWQHPKMSRR 83
A+R+E+ + +SRR
Sbjct: 62 EEAMRWEYEVK--HLSRR 77
>1ywl_A Hypothetical UPF0213 protein EF2693; alpha and beta, structural
genomics, northeast structural genomics consortium
(NESG); NMR {Enterococcus faecalis}
Length = 96
Score = 53.4 bits (129), Expect = 1e-10
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 6 VYLLYSRNPRYLGRTYIGYTVDPDRRIKQHNKGKDFGGAH--KTSNRGPWDMVLIVYGFP 63
Y+L ++ G Y GYT +P+RR+ +HN G GA + + R P M+ F
Sbjct: 9 FYVLLCQD----GSFYGGYTTEPERRLTEHNSGT---GAKYTRLAKRRPVIMIH-TEKFE 60
Query: 64 NDISALRFEWAWQHPKMSRR--LQHVARKKSKETTYTY 99
A + E A++ K++R+ Q++ + + +
Sbjct: 61 TRSEATKAEAAFK--KLTRKQKEQYLKTFHLEHHHHHH 96
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase;
HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP:
c.1.21.1
Length = 280
Score = 29.4 bits (67), Expect = 0.29
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 22/70 (31%)
Query: 64 NDISALRFEWAWQHPKMSRRLQHVARKKSKETTYTYCLRLLHIMLQTAPWQRLPLTVQWL 123
ND+S R + P M +A E + L+H W+ + +
Sbjct: 105 NDVSGGRAD-----PAM---GPLLA-----EADVPWV--LMH-------WRAVSADTPHV 142
Query: 124 KPEYQQVLTE 133
Y V+ E
Sbjct: 143 PVRYGNVVAE 152
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis;
HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Length = 294
Score = 28.7 bits (65), Expect = 0.50
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 23/70 (32%)
Query: 64 NDISALRFEWAWQHPKMSRRLQHVARKKSKETTYTYCLRLLHIMLQTAPWQRLPLTVQWL 123
NDI R P + V + C +H P T+Q
Sbjct: 122 NDIWGFRQ------PGA---IDAVR-----DGNSGLCA--MH-------MLGEPQTMQVG 158
Query: 124 KPEYQQVLTE 133
+P+Y V+T+
Sbjct: 159 EPDYGDVVTD 168
>1mk0_A Intron-associated endonuclease 1; alpha/beta fold, catalytic
domain, DNA-binding surface, hydrolase; HET: CIT; 1.60A
{Enterobacteria phage T4} SCOP: d.226.1.1 PDB: 1ln0_A
Length = 97
Score = 27.4 bits (61), Expect = 0.62
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Query: 5 GVYLLYSR-NPRYLGRTYIGYTVDPDRRIKQH 35
G+Y + + N + Y+G D ++R K+H
Sbjct: 4 GIYQIKNTLN----NKVYVGSAKDFEKRWKRH 31
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 0.85
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 13/79 (16%)
Query: 58 IVYGFPNDISALRFEWAWQHPKMSRRLQHVARKKSKETT-YTYCLRLLHIMLQTAPWQRL 116
+V F ++ + +++ ++ R+ S T Y L+ Q
Sbjct: 78 MVQKFVEEVLRINYKFLMS------PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA---- 127
Query: 117 PLTVQWLKP--EYQQVLTE 133
V L+P + +Q L E
Sbjct: 128 KYNVSRLQPYLKLRQALLE 146
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation,
glycoprotein, hirschsprung diseas hydrolase, membrane,
metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens}
Length = 670
Score = 27.4 bits (61), Expect = 1.8
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 6/50 (12%)
Query: 12 RNPRYLGRTYIGYTVDPD------RRIKQHNKGKDFGGAHKTSNRGPWDM 55
+P+ L + + YT PD R + K NR W M
Sbjct: 411 MDPKELDKVFNDYTAVPDLYFENAMRFFNFSWRVTADQLRKAPNRDQWSM 460
>4ak5_A Anhydro-alpha-L-galactosidase; hydrolase, marine glycoside
hydrolase, marine polysaccharide degradation, marine
cazymes, AGAR metabolism; 1.70A {Bacteroides plebeius}
PDB: 4ak7_A* 4ak6_A
Length = 404
Score = 25.5 bits (55), Expect = 6.0
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 2/83 (2%)
Query: 18 GRTYIGYTVDPDR-RIKQHNKGKDFGGAHKTSNRGPWDMVLIVYGFPNDISALRFEWAWQ 76
G + T P++ ++ G +F P + L W
Sbjct: 314 GIASLITTDGPEKNTLQWSPDGINFEIMSVVKGA-PHAIGLNRSADAEKEPTEILRWGLT 372
Query: 77 HPKMSRRLQHVARKKSKETTYTY 99
H S Q + R +
Sbjct: 373 HIYNSSDYQSIMRFSTWTLQTHT 395
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase,
DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x
populus alba} PDB: 3n0g_A*
Length = 555
Score = 25.5 bits (55), Expect = 7.1
Identities = 8/59 (13%), Positives = 21/59 (35%)
Query: 48 SNRGPWDMVLIVYGFPNDISALRFEWAWQHPKMSRRLQHVARKKSKETTYTYCLRLLHI 106
S+ GP ++ + +I E ++ + R H+ R + + + +
Sbjct: 405 SSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGET 463
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.460
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,169,099
Number of extensions: 114975
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 15
Length of query: 133
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 50
Effective length of database: 4,384,350
Effective search space: 219217500
Effective search space used: 219217500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.4 bits)