BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12153
(236 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
Proton:xylose Symporter Xyle Bound To D-Xylose
pdb|4GBZ|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
Proton:xylose Symporter Xyle Bound To D-Glucose
pdb|4GC0|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
Proton:xylose Symporter Xyle Bound To
6-Bromo-6-Deoxy-D-Glucose
Length = 491
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 42/184 (22%)
Query: 38 FLGVILGSIPAGLLADRFGRR---VIMLISFYGQGAIS-------IAIVYNRSFPVYLIL 87
+G I+G G ++RFGRR I + F+ G S +I + + PVYL
Sbjct: 65 LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYL-- 122
Query: 88 RTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLL-----IELFPTRWRIGVAWVTEI 142
+ Y ++ IGV ++L EL P R + +
Sbjct: 123 -------------AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQF 169
Query: 143 CWTVGLVMLSLVSYWFPNWRDAELVTS-----------LPFVGFSLFYVWFIPESPLWKY 191
G +++ V+Y+ DA + + +P + F L ++ +PESP W
Sbjct: 170 AIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF-LMLLYTVPESPRWLM 228
Query: 192 TKNK 195
++ K
Sbjct: 229 SRGK 232
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 21/60 (35%)
Query: 140 TEICWTVGLVMLSLVSYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDF 199
T TV + L Y W D E + + F + E WKY K IDF
Sbjct: 126 TSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKENNIDF 185
>pdb|2I48|A Chain A, Crystal Structure Of Bicarbonate Transport Protein Cmpa
From Synechocystis Sp. Pcc 6803 In Complex With Carbonic
Acid
pdb|2I49|A Chain A, Crystal Structure Of Apo Form Of Bicarbonate Transport
Protein Cmpa From Synechocystis Sp. Pcc 6803
pdb|2I4B|A Chain A, Crystal Structure Of Bicarbonate Transport Protein Cmpa
From Synechocystis Sp. Pcc 6803 In Complex With
Bicarbonate And Calcium
pdb|2I4C|A Chain A, Crystal Structure Of Bicarbonate Transport Protein Cmpa
From Synechocystis Sp. Pcc 6803 In Complex With
Bicarbonate And Calcium
Length = 429
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 161 WRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDFEYLCD--DESHRE 210
W+D S P+ L WF+ ES W + KN I D + D+ +RE
Sbjct: 331 WKDGIGNVSYPYKSHDL---WFLTESIRWGFHKNAIPDLDTAQKIIDKVNRE 379
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.143 0.482
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,522,735
Number of Sequences: 62578
Number of extensions: 305336
Number of successful extensions: 636
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 6
length of query: 236
length of database: 14,973,337
effective HSP length: 96
effective length of query: 140
effective length of database: 8,965,849
effective search space: 1255218860
effective search space used: 1255218860
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)