Query psy12153
Match_columns 236
No_of_seqs 205 out of 1629
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 20:05:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12153.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12153hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.9 2.1E-22 7.3E-27 178.5 14.1 163 26-207 53-244 (491)
2 3o7q_A L-fucose-proton symport 99.8 2.8E-18 9.7E-23 149.5 16.2 152 16-188 52-236 (438)
3 1pw4_A Glycerol-3-phosphate tr 99.8 3.4E-19 1.2E-23 155.8 10.1 152 16-189 54-213 (451)
4 2gfp_A EMRD, multidrug resista 99.8 8.5E-19 2.9E-23 150.3 10.1 153 16-189 26-181 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.7 5.3E-17 1.8E-21 143.8 14.7 143 19-180 48-194 (491)
6 2xut_A Proton/peptide symporte 99.6 1.7E-15 5.9E-20 135.2 14.5 134 26-177 52-193 (524)
7 4gc0_A D-xylose-proton symport 99.5 5.3E-13 1.8E-17 117.9 16.7 153 26-202 310-476 (491)
8 2cfq_A Lactose permease; trans 99.3 7.3E-12 2.5E-16 109.1 11.3 142 28-187 259-404 (417)
9 1pw4_A Glycerol-3-phosphate tr 99.3 5.3E-11 1.8E-15 103.6 15.7 139 20-179 283-430 (451)
10 4aps_A DI-OR tripeptide H+ sym 99.2 8.1E-11 2.8E-15 103.9 9.7 143 26-186 317-475 (491)
11 3o7q_A L-fucose-proton symport 99.1 8.4E-10 2.9E-14 95.7 13.7 129 20-172 290-422 (438)
12 2cfq_A Lactose permease; trans 99.1 3.3E-12 1.1E-16 111.3 -1.9 147 18-186 36-191 (417)
13 2xut_A Proton/peptide symporte 98.6 9.2E-08 3.1E-12 85.0 9.1 138 31-186 338-506 (524)
14 2gfp_A EMRD, multidrug resista 98.3 2E-07 6.7E-12 79.2 2.6 124 20-167 230-361 (375)
15 2g9p_A Antimicrobial peptide l 54.5 6.4 0.00022 18.8 1.4 14 47-60 2-15 (26)
16 2jln_A MHP1; hydantoin, transp 21.9 2.2E+02 0.0074 24.7 6.9 15 97-111 369-383 (501)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.88 E-value=2.1e-22 Score=178.51 Aligned_cols=163 Identities=21% Similarity=0.291 Sum_probs=142.5
Q ss_pred CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHH------------------HhccHHHHHHH
Q psy12153 26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIV------------------YNRSFPVYLIL 87 (236)
Q Consensus 26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~ 87 (236)
+..+.+++.+.+.+|..+|++++|+++||+|||++++++.++..++.++++ .++|++.++++
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 456678999999999999999999999999999999999999999999888 47899999999
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc--------
Q psy12153 88 RTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP-------- 159 (236)
Q Consensus 88 ~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~-------- 159 (236)
|+++|++.|+..+....+++|+.|+++| ++..+..+.+..+|.++++.++....
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~r------------------g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 194 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHIR------------------GKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWL 194 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHhh------------------hhhHHhhhhhhhhhhhhhhhcchhhccccccccc
Confidence 9999999999999999999999999999 99999999999999999888776542
Q ss_pred ---hhHHHHHHHHhHHHHHHHHHHhhcccchhHHHhcCCHhHHHHHHHHhh
Q psy12153 160 ---NWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDFEYLCDDES 207 (236)
Q Consensus 160 ---~w~~~~~i~~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~~~~~~~ 207 (236)
.||..+.+..+.. +..++..+++||||+|...+++.+++.+.+++..
T Consensus 195 ~~~~~~~~~~~~~~~~-~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~ 244 (491)
T 4gc0_A 195 NTDGWRYMFASECIPA-LLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIM 244 (491)
T ss_dssp TTTHHHHHHHTTHHHH-HHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhHHHhhhhhhhh-hhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhc
Confidence 4676766666665 6667778889999999999999888777665543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.79 E-value=2.8e-18 Score=149.52 Aligned_cols=152 Identities=9% Similarity=0.089 Sum_probs=133.0
Q ss_pred ceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHH---HHhccHHHHHHHHHHHH
Q psy12153 16 PVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAI---VYNRSFPVYLILRTMQG 92 (236)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~g 92 (236)
+.+++++ +..+.+++.+++.++..++.+++|+++||+|||++++++.++.+++.++. ...++++.+++.|++.|
T Consensus 52 ~~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 128 (438)
T 3o7q_A 52 FQQAFTL---TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIA 128 (438)
T ss_dssp HHHHSCC---CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 4567888 99999999999999999999999999999999999999999999999998 78899999999999999
Q ss_pred HhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc----h--------
Q psy12153 93 FFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP----N-------- 160 (236)
Q Consensus 93 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~----~-------- 160 (236)
++.+...+....++.|++|+++| ++..+..+....+|..+++.++..+. +
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~r------------------~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~ 190 (438)
T 3o7q_A 129 AGLGCLETAANPFVTVLGPESSG------------------HFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLD 190 (438)
T ss_dssp HHHHHHHHHHHHHHHHSSCSTTH------------------HHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHH
T ss_pred hhHHHhhhhHHHHHHHHcCchhH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 99999999999999999999999 99999999999999999999887763 2
Q ss_pred -----------------hHHHHHHHHhHHHHHHHHHHh-hcccchh
Q psy12153 161 -----------------WRDAELVTSLPFVGFSLFYVW-FIPESPL 188 (236)
Q Consensus 161 -----------------w~~~~~i~~~~~~~~~~~~~~-~~pet~~ 188 (236)
||+.|++.++...+..++..+ ..||+++
T Consensus 191 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 236 (438)
T 3o7q_A 191 KMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS 236 (438)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred cCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 999998777766444443333 3566653
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.78 E-value=3.4e-19 Score=155.78 Aligned_cols=152 Identities=16% Similarity=0.130 Sum_probs=138.6
Q ss_pred ceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHH
Q psy12153 16 PVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY----NRSFPVYLILRTMQ 91 (236)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~ 91 (236)
+.+++ + +..+.+++.+++.++..++.+++|+++||+|||++++++.++.+++.++.++ .++++.+++.|++.
T Consensus 54 ~~~~~-~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 129 (451)
T 1pw4_A 54 LVEQG-F---SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLC 129 (451)
T ss_dssp TTSST-T---CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHH
T ss_pred HHHHh-c---cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHH
Confidence 34566 6 8899999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---h-hHHHHHH
Q psy12153 92 GFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---N-WRDAELV 167 (236)
Q Consensus 92 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~-w~~~~~i 167 (236)
|++.+...+...+++.|++|+++| ++..+..+....+|..+++.+++.+. + ||+.|++
T Consensus 130 G~~~~~~~~~~~~~i~~~~~~~~r------------------~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~ 191 (451)
T 1pw4_A 130 GWFQGMGWPPCGRTMVHWWSQKER------------------GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM 191 (451)
T ss_dssp HHHHHHTHHHHHHHHHTTCTTTHH------------------HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred HHHhhhccchHHHHHHHHCCchhh------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999999999999 99999999999999999999987742 6 9999999
Q ss_pred HHhHHHHHHHHHHhhcccchhH
Q psy12153 168 TSLPFVGFSLFYVWFIPESPLW 189 (236)
Q Consensus 168 ~~~~~~~~~~~~~~~~pet~~~ 189 (236)
.+++.++..++..+++||+|+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~ 213 (451)
T 1pw4_A 192 PAFCAILVALFAFAMMRDTPQS 213 (451)
T ss_dssp HHHHHHHHHHHHHHHCCCSSTT
T ss_pred HHHHHHHHHHHHHhhccCCHhh
Confidence 9888866677777888998764
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.77 E-value=8.5e-19 Score=150.27 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=138.8
Q ss_pred ceeeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Q psy12153 16 PVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFV 95 (236)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 95 (236)
+.++++. +..+.+++.+.+.++..++.++.|+++||+|||++++++.++..++.......++++.+++.|++.|++.
T Consensus 26 ~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~ 102 (375)
T 2gfp_A 26 MARDLNV---REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGT 102 (375)
T ss_dssp HHTTSSS---TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3567788 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHH
Q psy12153 96 QGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPF 172 (236)
Q Consensus 96 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~ 172 (236)
+...+....++.|++|+++| ++..+..+....+|..+++.+++.+. +||+.|++.++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (375)
T 2gfp_A 103 GVGGVMARTLPRDLYERTQL------------------RHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLC 164 (375)
T ss_dssp HHHHHHHHHHHHHHHHTSSC------------------CSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHCCHHHH------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999999 99999999999999999999998875 7999999888887
Q ss_pred HHHHHHHHhhcccchhH
Q psy12153 173 VGFSLFYVWFIPESPLW 189 (236)
Q Consensus 173 ~~~~~~~~~~~pet~~~ 189 (236)
++..+...+.+||+++.
T Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 165 AGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHCcccCCC
Confidence 55555566778987653
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.73 E-value=5.3e-17 Score=143.85 Aligned_cols=143 Identities=16% Similarity=0.043 Sum_probs=126.4
Q ss_pred eeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhh
Q psy12153 19 LWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADR-FGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQG 97 (236)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 97 (236)
|+|+ +..+.+++.+++.++..++++++|+++|| +|||++++++.++..++.++.+++++.+.+++.|++.|++.+.
T Consensus 48 ~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 124 (491)
T 4aps_A 48 DLHI---TRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGF 124 (491)
T ss_dssp SCCS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHH
T ss_pred hcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 4788 99999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHH
Q psy12153 98 LQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVG 174 (236)
Q Consensus 98 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~ 174 (236)
..+....++.|++|+++| .|+...+..+...++|..++|.+++.+. +||+.|++.++..++
T Consensus 125 ~~~~~~~~~~~~~~~~~~----------------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~ 188 (491)
T 4aps_A 125 LKPNVSTLVGTLYDEHDR----------------RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFI 188 (491)
T ss_dssp HHHHHHHHHHHHSSSCTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHcCcccc----------------cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999999999999883 0177888888999999999999988874 799999988776634
Q ss_pred HHHHHH
Q psy12153 175 FSLFYV 180 (236)
Q Consensus 175 ~~~~~~ 180 (236)
..++..
T Consensus 189 ~~~~~~ 194 (491)
T 4aps_A 189 GLLVYY 194 (491)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.65 E-value=1.7e-15 Score=135.25 Aligned_cols=134 Identities=13% Similarity=0.029 Sum_probs=120.1
Q ss_pred CcchhHHHHHHHHHHHHhhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhhhhhhHHHH
Q psy12153 26 ECKWNAAVVTLYFLGVILGSIPAGLLADRF-GRRVIMLISFYGQGAISIAIVYNR-SFPVYLILRTMQGFFVQGLQNSTY 103 (236)
Q Consensus 26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~ 103 (236)
+..+.+++.+++.++..++.+++|+++||+ |||++++++.++.+++.++..+.+ +.+.+++.|++.|++.+...+...
T Consensus 52 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 131 (524)
T 2xut_A 52 RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVS 131 (524)
T ss_dssp TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHH
Confidence 899999999999999999999999999999 999999999999999999999998 999999999999999999999999
Q ss_pred HHHHhhcCccccccccchhhhhhccccccchhhHHH---HHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHHHHH
Q psy12153 104 TLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWV---TEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVGFSL 177 (236)
Q Consensus 104 ~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~~~ 177 (236)
.++.|++|+++| +...+. .+...++|..++|.+++.+. +|++.|++.++..++..+
T Consensus 132 ~~~~~~~~~~~r------------------~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 132 SFMGDQFDQSNK------------------SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATV 193 (524)
T ss_dssp HHHHHTCSTTTT------------------THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCccch------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 999999999988 766665 88889999999998877663 799999988877633333
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.51 E-value=5.3e-13 Score=117.95 Aligned_cols=153 Identities=16% Similarity=0.052 Sum_probs=104.8
Q ss_pred CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHh-hhhhhH
Q psy12153 26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYN----RSFPVYLILRTMQGFF-VQGLQN 100 (236)
Q Consensus 26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~-~~~~~~ 100 (236)
+............+...++.++.+++.||+|||+.++.+..+..++.+..+.. .+....++...+...+ ..+..+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (491)
T 4gc0_A 310 STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGP 389 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTH
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHH
Confidence 44555566677778888999999999999999999999888888777665532 1112222222221111 222334
Q ss_pred HHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---------hhHHHHHHHHhH
Q psy12153 101 STYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---------NWRDAELVTSLP 171 (236)
Q Consensus 101 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---------~w~~~~~i~~~~ 171 (236)
..+.+.+|.+|++.| +...++......+++.+++.+.+.+. ++...|++.+++
T Consensus 390 ~~~~~~~E~fPt~~R------------------~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~ 451 (491)
T 4gc0_A 390 VCWVLLSEIFPNAIR------------------GKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM 451 (491)
T ss_dssp HHHHHHHHSSCTTTH------------------HHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCHhHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 455566666666666 99999999999999999888776653 234567788888
Q ss_pred HHHHHHHHHhhcccchhHHHhcCCHhHHHHH
Q psy12153 172 FVGFSLFYVWFIPESPLWKYTKNKIIDFEYL 202 (236)
Q Consensus 172 ~~~~~~~~~~~~pet~~~~~~~~~~~~~~~~ 202 (236)
+++..++.++++||| |++..|+.++
T Consensus 452 ~~~~~i~~~~~~PET------kg~tLeei~~ 476 (491)
T 4gc0_A 452 GVLAALFMWKFVPET------KGKTLEELEA 476 (491)
T ss_dssp HHHHHHHHHHHCCCC------TTCCHHHHGG
T ss_pred HHHHHHHHHheecCC------CCCCHHHHHH
Confidence 867788888999999 6665554443
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.33 E-value=7.3e-12 Score=109.12 Aligned_cols=142 Identities=20% Similarity=0.180 Sum_probs=109.1
Q ss_pred chhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy12153 28 KWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLI 107 (236)
Q Consensus 28 ~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 107 (236)
...++..++..++..++.++.++++||+|||+++..+.++.++.....++.++.+.+++...+.+++.+...+....++.
T Consensus 259 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 338 (417)
T 2cfq_A 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYIT 338 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677777788889999999999999999999888888777766666777777777777777776666666677888
Q ss_pred hhcCccccccccchhhhhhccccccchhhHHH-HHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHhHHHHHHHHHHhhc
Q psy12153 108 ELFPTRWRIGVATYTLLIELFPTRWRIGVAWV-TEICWTVGLVMLSLVSYWFP---NWRDAELVTSLPFVGFSLFYVWFI 183 (236)
Q Consensus 108 e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~i~~~~~---~w~~~~~i~~~~~~~~~~~~~~~~ 183 (236)
|.+|++.| +...+. .+....+|..++|.+.+.+. ++...|.+.+++.++..++.+++.
T Consensus 339 ~~~p~~~~------------------g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 339 SQFEVRFS------------------ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHSCHHHH------------------HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHCCHHHH------------------HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 88888888 888887 47778899999998888764 567788887777745555555666
Q ss_pred ccch
Q psy12153 184 PESP 187 (236)
Q Consensus 184 pet~ 187 (236)
||++
T Consensus 401 ~~~~ 404 (417)
T 2cfq_A 401 SGPG 404 (417)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 7653
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.31 E-value=5.3e-11 Score=103.61 Aligned_cols=139 Identities=19% Similarity=0.147 Sum_probs=114.7
Q ss_pred eeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhh--CchHHHHHHHHHHH-HHHHHHHHh--ccHHHHHHHHHHHHHh
Q psy12153 20 WHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRF--GRRVIMLISFYGQG-AISIAIVYN--RSFPVYLILRTMQGFF 94 (236)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~l~g~~ 94 (236)
+++ +..+.++..+...++..++.++.|+++||+ |||+.+.++..+.. ++.+..... .+.+...+..++.|++
T Consensus 283 ~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 359 (451)
T 1pw4_A 283 KHF---ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFL 359 (451)
T ss_dssp SCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHH
T ss_pred cCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence 666 888899999999999999999999999999 99999888777666 555555544 3666677777888888
Q ss_pred hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHH-HHHHHHHHHHhcc---hhHHHHHHHHh
Q psy12153 95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTV-GLVMLSLVSYWFP---NWRDAELVTSL 170 (236)
Q Consensus 95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~l~~~i~~~~~---~w~~~~~i~~~ 170 (236)
.+...+....++.|.+|++.| +...++.+....+ |..+++.+.+.+. +|+..|++.++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~------------------g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 421 (451)
T 1pw4_A 360 IYGPVMLIGLHALELAPKKAA------------------GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIG 421 (451)
T ss_dssp HTHHHHHHHHHHHHTSCTTHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHhchhhh------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 888888888999999999999 9999999999999 9999999888764 68888888887
Q ss_pred HHHHHHHHH
Q psy12153 171 PFVGFSLFY 179 (236)
Q Consensus 171 ~~~~~~~~~ 179 (236)
..++..++.
T Consensus 422 ~~~~~~~~~ 430 (451)
T 1pw4_A 422 GSILAVILL 430 (451)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 774443333
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.17 E-value=8.1e-11 Score=103.95 Aligned_cols=143 Identities=9% Similarity=-0.082 Sum_probs=108.0
Q ss_pred CcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHH-----HHHHHHHHHHHHHHHh---------ccHHHHHHHHHHH
Q psy12153 26 ECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIML-----ISFYGQGAISIAIVYN---------RSFPVYLILRTMQ 91 (236)
Q Consensus 26 ~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~-----~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~ 91 (236)
+....++..+...++..++.++.++++||+|||+... ++.++.+++..+.... .+.+.+.+..++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (491)
T 4aps_A 317 SWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALV 396 (491)
T ss_dssp SSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHH
T ss_pred CccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHH
Confidence 3345666777788888899999999999999986654 6666666666655543 2566677778888
Q ss_pred HHhhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHH
Q psy12153 92 GFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP--NWRDAELVTS 169 (236)
Q Consensus 92 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~--~w~~~~~i~~ 169 (236)
|++.+...+....++.|..|++.| +...++......+|..+++.+.+.+. ++...|.+.+
T Consensus 397 g~~~~~~~~~~~~~~~~~~p~~~~------------------g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~ 458 (491)
T 4aps_A 397 ILGEMLISPVGLSVTTKLAPKAFN------------------SQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFG 458 (491)
T ss_dssp HHHHHTTTTHHHHHHHHHTTTTCS------------------SSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTH
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 998888888889999999999999 99999999999999999999988875 4566777777
Q ss_pred hHHHHHHHHHHhhcccc
Q psy12153 170 LPFVGFSLFYVWFIPES 186 (236)
Q Consensus 170 ~~~~~~~~~~~~~~pet 186 (236)
+..++..++.+++.++.
T Consensus 459 ~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 459 LGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77755566666665654
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.12 E-value=8.4e-10 Score=95.70 Aligned_cols=129 Identities=15% Similarity=0.117 Sum_probs=104.4
Q ss_pred eeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhh
Q psy12153 20 WHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQ 99 (236)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 99 (236)
+++ +..+.++..+...++..++.++.|+++||+|||+++.++.++..++.++....++.+..... ++.|++.+...
T Consensus 290 ~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~ 365 (438)
T 3o7q_A 290 PGM---TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQY 365 (438)
T ss_dssp TTC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHH
T ss_pred CCc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHH
Confidence 356 88889999999999999999999999999999999999999988888888887776654443 77888888888
Q ss_pred HHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---h-hHHHHHHHHhHH
Q psy12153 100 NSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---N-WRDAELVTSLPF 172 (236)
Q Consensus 100 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~-w~~~~~i~~~~~ 172 (236)
+....+..|.+|++ | +...+... ...+|..++|.+.+.+. + ++..|++.++..
T Consensus 366 ~~~~~~~~~~~~~~-~------------------~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 422 (438)
T 3o7q_A 366 PTIFSLGIKNLGQD-T------------------KYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCF 422 (438)
T ss_dssp HHHHHHHHSSCGGG-H------------------HHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHH
T ss_pred HHHHHHHHhhcccc-c------------------cchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 98899989999866 6 66666665 45688888888887764 4 777777655544
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.11 E-value=3.3e-12 Score=111.32 Aligned_cols=147 Identities=14% Similarity=0.031 Sum_probs=90.9
Q ss_pred eeeeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHH---HHhccH-HHHHHHHHHHHH
Q psy12153 18 LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAI---VYNRSF-PVYLILRTMQGF 93 (236)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~l~g~ 93 (236)
+++|+ +..+.+++.+.+.++..++++++|+++||+|||++++++..+..+..... ...+.. ......+.+.++
T Consensus 36 ~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (417)
T 2cfq_A 36 DINHI---SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI 112 (417)
T ss_dssp TTTCC---CTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGS
T ss_pred HHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777 88999999999999999999999999999999999998877665422111 111111 012233444444
Q ss_pred hhhhhhHHHHHHHHhhcCc--cccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHH
Q psy12153 94 FVQGLQNSTYTLLIELFPT--RWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP--NWRDAELVTS 169 (236)
Q Consensus 94 ~~~~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~--~w~~~~~i~~ 169 (236)
+.+...+.......++.++ ++| +...+.......+|..++|.+++++. +|+..|++.+
T Consensus 113 ~~g~~~~~~~~~~~~~~~~~~~~~------------------~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~ 174 (417)
T 2cfq_A 113 YLGFCFNAGAPAVEAFIEKVSRRS------------------NFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGS 174 (417)
T ss_dssp STTHHHHTTHHHHHHHHHHHHHHH------------------TCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTT
T ss_pred HHHHHHhhhHHHHHHHHHHhhhhc------------------ccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 4433333333333334332 233 55556665566677777777776654 6898888777
Q ss_pred hHHHHHHHHHHhhc-ccc
Q psy12153 170 LPFVGFSLFYVWFI-PES 186 (236)
Q Consensus 170 ~~~~~~~~~~~~~~-pet 186 (236)
+.. +..++..++. ||+
T Consensus 175 ~~~-~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 175 GCA-LILAVLLFFAKTDA 191 (417)
T ss_dssp TTT-TTHHHHSCSSCCCC
T ss_pred HHH-HHHHHHHHHcCccc
Confidence 665 3333333444 444
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.63 E-value=9.2e-08 Score=85.01 Aligned_cols=138 Identities=12% Similarity=-0.031 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhh----hhhCc----hHHHHHHHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHH
Q psy12153 31 AAVVTLYFLGVILGSIPAGLLA----DRFGR----RVIMLISFYGQGAISIAIVYN---------RSFPVYLILRTMQGF 93 (236)
Q Consensus 31 ~~~~~~~~l~~~~~~~~~g~l~----Dr~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~g~ 93 (236)
++......++..++.++.+.+. ||.|+ ++.+.++.++.+++.++.... .+.+.+++..++.|+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 417 (524)
T 2xut_A 338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF 417 (524)
T ss_dssp HHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence 3333333344445555555543 44443 245666777777776666553 356667777888999
Q ss_pred hhhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcch-----h-------
Q psy12153 94 FVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPN-----W------- 161 (236)
Q Consensus 94 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~~-----w------- 161 (236)
+.+...+....++.|..|++.| +...++.+....+|..+++.+.+.+.+ |
T Consensus 418 ~~~~~~~~~~~~~~~~~p~~~~------------------g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~ 479 (524)
T 2xut_A 418 GEVLVSATGLEFAYSQAPKAMK------------------GTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMS 479 (524)
T ss_dssp HHHHHHHHHTTTHHHHCCTTCC------------------TTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhCcHHHH------------------hHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9888889889999999999999 999999999999999999999888753 3
Q ss_pred --HHHHHHHHhHHHHHHHHHHhhcccc
Q psy12153 162 --RDAELVTSLPFVGFSLFYVWFIPES 186 (236)
Q Consensus 162 --~~~~~i~~~~~~~~~~~~~~~~pet 186 (236)
+..|++.+.+.++..++..++.++.
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (524)
T 2xut_A 480 VTAFQMFFFAGFAILAAIVFALYARSY 506 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2336666666644444444455554
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.31 E-value=2e-07 Score=79.23 Aligned_cols=124 Identities=16% Similarity=0.005 Sum_probs=91.2
Q ss_pred eeeeecCcchhHHHHHHHHHHHHhhhhhhhhhhhhhCchHHHHHHHHH-HHHHHH--HHHH--hccHHHHHHHHHHHHHh
Q psy12153 20 WHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYG-QGAISI--AIVY--NRSFPVYLILRTMQGFF 94 (236)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~l~Dr~Grr~~l~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~l~g~~ 94 (236)
+|+ +..+.++..+...++..++.++.+++.||+||+. ..+... ...+.. .... .++.+.+.+..++.|++
T Consensus 230 ~g~---~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 304 (375)
T 2gfp_A 230 LGL---SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFG 304 (375)
T ss_dssp HHH---HHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHH
Confidence 566 7788899999999999999999999999998833 222222 222111 1222 23566666777888998
Q ss_pred hhhhhHHHHHHHHhhcCccccccccchhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHH
Q psy12153 95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFP---NWRDAELV 167 (236)
Q Consensus 95 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~i~~~~~---~w~~~~~i 167 (236)
.+...+....+..|..| ++| ++..+..+....+|..+++.+.+.+. +++..+++
T Consensus 305 ~~~~~~~~~~~~~~~~p-~~~------------------g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 305 AGMLFPLATSGAMEPFP-FLA------------------GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHTSSTTHHHHHTHHH-HHH------------------HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHhCC-ccc------------------chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 88888888999999998 788 99999999999999988887776663 34444444
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=54.54 E-value=6.4 Score=18.80 Aligned_cols=14 Identities=43% Similarity=0.748 Sum_probs=11.3
Q ss_pred hhhhhhhhhCchHH
Q psy12153 47 PAGLLADRFGRRVI 60 (236)
Q Consensus 47 ~~g~l~Dr~Grr~~ 60 (236)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46788999999864
No 16
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=21.93 E-value=2.2e+02 Score=24.71 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHhhcC
Q psy12153 97 GLQNSTYTLLIELFP 111 (236)
Q Consensus 97 ~~~~~~~~~~~e~~~ 111 (236)
...|....++.|.+-
T Consensus 369 ~l~P~~gI~l~Dy~i 383 (501)
T 2jln_A 369 ALGPLAGIMISDYFL 383 (501)
T ss_dssp TTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 345566677888864
Done!