RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12153
(236 letters)
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 117 bits (296), Expect = 1e-30
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 19/162 (11%)
Query: 35 TLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF 94
+ +F+GV+LGS G L+DRFGR+ ++L+S + ++ ++ V+L+ R + G
Sbjct: 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMG 193
Query: 95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLV 154
+ G I V L E P + R V + ++ +++GLV+L LV
Sbjct: 194 IGG------------------IWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLV 235
Query: 155 SYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKI 196
+Y+ P+WR +L SLP F WF+PESP W ++ +I
Sbjct: 236 AYFIPDWRWLQLAVSLPTFLF-FLLSWFVPESPRWLISQGRI 276
Score = 27.7 bits (62), Expect = 6.9
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 8/87 (9%)
Query: 34 VTLYFLGVILG--SIPAGLLA----DRFGRRVIMLISFYGQGAISIAI--VYNRSFPVYL 85
+Y I G +PA L+ DR GRR M S G + + V + +
Sbjct: 355 GNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRT 414
Query: 86 ILRTMQGFFVQGLQNSTYTLLIELFPT 112
L + F + Y EL+PT
Sbjct: 415 ALAVLGKFGITSAFQMVYLYTAELYPT 441
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 60.0 bits (146), Expect = 1e-10
Identities = 33/157 (21%), Positives = 64/157 (40%), Gaps = 21/157 (13%)
Query: 31 AAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTM 90
+V+ + LG LGS+ AG L+DRFGRR ++L+ S+ + + S + L+ R +
Sbjct: 37 GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFL 96
Query: 91 QGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVM 150
G L + L+ E FP + R + + +G ++
Sbjct: 97 LGLGGGALYPAAAALIAEWFPPKERGRALG------------------LFSAGFGLGALL 138
Query: 151 LSLVSYWFP---NWRDAELVTSLPFVGFSLFYVWFIP 184
L+ WR L+ ++ + +L ++ +
Sbjct: 139 GPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLR 175
Score = 39.6 bits (93), Expect = 9e-04
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 16 PVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRR-VIMLISFYGQGAISIA 74
P+ L + +++L+ LG ILG++ GLL+DR GRR +++LI +
Sbjct: 199 PLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLL 258
Query: 75 IVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWR 115
+ S + L+ + GF + + TL EL P R
Sbjct: 259 LALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEAR 299
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 58.5 bits (142), Expect = 5e-10
Identities = 43/181 (23%), Positives = 71/181 (39%), Gaps = 35/181 (19%)
Query: 28 KWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLIS--FYGQGAISIAIVYNRSFPVYL 85
+ +V+++ +G ++GS+ AG L DRFGR+ +LI + GA+ +SF + +
Sbjct: 46 VLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLI 105
Query: 86 ILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWT 145
+ R + G V G+ + E+ P + R L +L T
Sbjct: 106 VGRVIVGLGVGGISVLVPMYISEIAPKKLR---GALGSLYQLG---------------IT 147
Query: 146 VGLVMLSLVSYWF----------PNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNK 195
G+ LV+ WR L L + F+PESP W K K
Sbjct: 148 FGI----LVAAIIGLGLNKYSNSDGWR-IPLGLQFVPAILLLIGLLFLPESPRWLVLKGK 202
Query: 196 I 196
+
Sbjct: 203 L 203
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 57.0 bits (138), Expect = 1e-09
Identities = 34/158 (21%), Positives = 64/158 (40%), Gaps = 21/158 (13%)
Query: 33 VVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQG 92
++T + LG L AG L+DRFGRR ++LI + +++ S + L+LR +QG
Sbjct: 37 LLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQG 96
Query: 93 FFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLS 152
L + L+ + FP P + ++ + +G +
Sbjct: 97 LGGGALFPAAAALIADWFP-----------------PEERGRALGLLS-AGFGLGAALGP 138
Query: 153 LVSYWF---PNWRDAELVTSLPFVGFSLFYVWFIPESP 187
L+ WR A L+ ++ + ++ +P P
Sbjct: 139 LLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPP 176
Score = 35.5 bits (82), Expect = 0.019
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 31 AAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVY---NRSFPVYLIL 87
++ L L +G + G L+DR GRR +L++ ++ + S L+
Sbjct: 240 GLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVA 299
Query: 88 RTMQGFFVQGLQNSTYTLLIELFPTRWR 115
+ GF + + L+ +L P R
Sbjct: 300 LLLLGFGAGLVFPALNALVSDLAPKEER 327
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 50.8 bits (122), Expect = 2e-07
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 29 WNAAVVTLYFL------GVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFP 82
W V L FL G+ G++ G LADR GRR ++L S ++ +
Sbjct: 47 WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVT 106
Query: 83 VYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATY 121
LILR + G + GL + L+ E P R+R
Sbjct: 107 QLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGL 145
Score = 48.9 bits (117), Expect = 6e-07
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 31 AAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNR--SFPVYLILR 88
A L+ G ++GSI G LADR G RV L+ GA+ +V + S + L+L
Sbjct: 288 ATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLL--GAVFAVLVGSTLFSPTLLLLLG 345
Query: 89 TMQGFFVQGLQNSTYTLLIELFPTRWR 115
+ GFFV G Q+ Y L+ +PT R
Sbjct: 346 AIAGFFVNGGQSGLYALMALFYPTAIR 372
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 50.7 bits (121), Expect = 2e-07
Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 11/157 (7%)
Query: 35 TLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF 94
+ +LG+++G+ G LAD+ GR+ +LI G + + + + +L R + GF
Sbjct: 209 LIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFG 268
Query: 95 VQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTV----GLVM 150
+ G ++ E R ++ + W IG + + W + G
Sbjct: 269 IGGAIPIVFSYFAEFLAQEKRGEHLSWLCMF------WMIGGIYAAAMAWAIIPHYGWSF 322
Query: 151 LSLVSYWFPNWRDAELVTSLPFVGFSLFYVWFIPESP 187
+Y F +WR +V + P V F++ + F+PESP
Sbjct: 323 QMGSAYQFHSWRVFVIVCAFPCV-FAIGALTFMPESP 358
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 45.7 bits (109), Expect = 2e-06
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 34 VTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGF 93
+ Y LG ++ S +GLL DRFGR+ ++L+ + + + + V +I R +QGF
Sbjct: 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGF 63
Query: 94 F 94
Sbjct: 64 G 64
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 44.1 bits (104), Expect = 3e-05
Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 16/170 (9%)
Query: 22 LYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSF 81
+ A++++ + G++ GL DR+GRR+ M+ S A ++A + +
Sbjct: 41 EFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGY 100
Query: 82 PVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTE 141
I R + G + G S+ +IE +P R A+ LLI +
Sbjct: 101 ITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLR-NKAS-GLLISGY------------A 146
Query: 142 ICWTVGLVMLSLVSYWF-PNWRDAELVTSLPFVGFSLFYVWFIPESPLWK 190
+ V + SLV + WR ++ LP + F+L+ IPE+ WK
Sbjct: 147 VGAVVAAQVYSLVVPVWGDGWRALFFISILPII-FALWLRKNIPEAEDWK 195
Score = 39.1 bits (91), Expect = 0.001
Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Query: 31 AAVVTLYFLGVILGSIPAGLLADRFGRRVIMLIS-FYGQGAISIAIVYNRSFPVYLILRT 89
A +V +G I+G G L D GRR + S GQ I + V +
Sbjct: 277 ANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLF 336
Query: 90 MQGFFVQGLQNSTYTLLIELFPTRWRIGVATYT 122
Q VQG+ L E FPT R +T
Sbjct: 337 FQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFT 369
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 43.5 bits (103), Expect = 5e-05
Identities = 40/181 (22%), Positives = 68/181 (37%), Gaps = 27/181 (14%)
Query: 33 VVTLYFLGVILGSIPAGLLADRFGRRVIMLIS---FYGQGAISIAIVYNRSFPVYLILRT 89
VV+++ +G +G++ AG L+DRFGR+ +LI F + + S + ++ R
Sbjct: 76 VVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRV 135
Query: 90 MQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLV 149
+ G V L E+ P R T L +L T G++
Sbjct: 136 LLGIGVGIASALVPMYLSEIAPKALR---GALTSLYQL---------------AITFGIL 177
Query: 150 MLSLVSYW--FPNWR---DAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIIDF-EYLC 203
+ N L L G ++F+PESP W K ++ + + L
Sbjct: 178 VAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLA 237
Query: 204 D 204
Sbjct: 238 R 238
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli [Cellular
processes, Toxin production and resistance, Transport
and binding proteins, Other].
Length = 485
Score = 42.4 bits (100), Expect = 1e-04
Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 11/155 (7%)
Query: 33 VVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQG 92
V+T Y L + G LA RFG R + LIS + S+ + + +I R +QG
Sbjct: 42 VITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQG 101
Query: 93 FFVQGLQNSTYTLLIELFPTRWR-IGVATYTLLIELFPTRWRIGVAWVTE-ICW------ 144
F L +++ L+ ++P R +A + L + + P W+ E W
Sbjct: 102 FGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLI 161
Query: 145 --TVGLVMLSLVSYWFPNWRDAELVTSLPFVGFSL 177
+G++++ + + P + A + F+G L
Sbjct: 162 NVPIGIIVVVVAFFILPRDKPAASE-NFDFLGLLL 195
Score = 28.1 bits (63), Expect = 5.0
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 16 PVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISF 65
P+ L + + + L +L S AG + D+ R ++ I
Sbjct: 279 PLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGL 328
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 42.0 bits (99), Expect = 1e-04
Identities = 22/79 (27%), Positives = 40/79 (50%)
Query: 35 TLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF 94
TLY LG G + G L+DR+GRR ++L+ + S+ + + + L+LR +Q F
Sbjct: 47 TLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFG 106
Query: 95 VQGLQNSTYTLLIELFPTR 113
+ L+ +++P
Sbjct: 107 ASAGSVISQALVRDIYPGE 125
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 40.8 bits (96), Expect = 3e-04
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 33 VVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQG 92
V + + G ++G P G L DRFG R + + G + + ++ ILR + G
Sbjct: 34 VFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLG 93
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 40.4 bits (95), Expect = 4e-04
Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 26/152 (17%)
Query: 43 LGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNST 102
+ G ++DR RV + I +++ ++ S V L + G F QG+
Sbjct: 45 ISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIF-QGMGWPP 103
Query: 103 YTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVG------LVMLSLVSY 156
+ T+W F R VG LV+ +
Sbjct: 104 CGRTV----TKW-------------FSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL 146
Query: 157 WFPNWRDAELVTSLPFVGFSLFYVWFIPESPL 188
+ +W +V + + SL + +SP
Sbjct: 147 Y--SWHWVFIVPGIIAIIVSLICFLLLRDSPQ 176
Score = 33.9 bits (78), Expect = 0.057
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 34 VTLYFLGVILGSIPAGLLADRF--GRRVIMLISFYGQGAISIAIVYNR---SFPVYLILR 88
TLY LG ++G++ AG L+D+ GRR + + F +S+ + + + + LI
Sbjct: 258 FTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICL 317
Query: 89 TMQGFFVQGLQNSTYTLLIELFPTR 113
GF V G Q + EL P +
Sbjct: 318 FALGFLVYGPQMLIGVIASELAPKK 342
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 40.3 bits (95), Expect = 4e-04
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 31 AAVVTLYF-LGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRT 89
A +V + F +G LGS+ G L DR R ++L+ + G A A+ SF L+
Sbjct: 257 AGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGF 316
Query: 90 MQGFFVQGLQNSTYTLLIELFPTRWR 115
G FV G Q+ Y L +PT+ R
Sbjct: 317 AAGLFVVGGQSVLYALAPLFYPTQVR 342
Score = 40.3 bits (95), Expect = 5e-04
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 39 LGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQG 92
LG++ G++ G LADR GR+ I+++S G S+A FP L+ R + G
Sbjct: 61 LGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTG 114
>gnl|CDD|225179 COG2270, COG2270, Permeases of the major facilitator superfamily
[General function prediction only].
Length = 438
Score = 37.7 bits (88), Expect = 0.003
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 29 WNAAVVTLYFLGV----ILGSIPAGLLADRFG-RRVIMLISFYGQGAISIAIVY--NRSF 81
++ + L + + LG+I AG L +RFG + V+M+ +SIA +Y
Sbjct: 285 LSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLV----ILSIAALYLIFLEG 340
Query: 82 PV-YLILRTMQGFFVQGLQNSTYTLLIELFP 111
+ + IL + G + G Q S+ + L L P
Sbjct: 341 ELDFWILGLLVGTSLGGAQASSRSYLARLVP 371
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 37.0 bits (86), Expect = 0.006
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 31 AAVVTLYFLGVILGSIPAGLLADRFGRRVIMLIS--FYGQGAISIAIVYNRSFPVYLILR 88
AA ++ +F G++LG++ DR+GRR+ M+IS + G ++ + I R
Sbjct: 63 AAFISRWFGGLLLGAM-----GDRYGRRLAMVISIVLFSVGTLACGFAPG--YWTLFIAR 115
Query: 89 TMQGFFVQGLQNSTYTLLIELFPTRWR 115
+ G + G S+ T +IE +P R
Sbjct: 116 LVIGMGMAGEYGSSATYVIESWPKHLR 142
Score = 28.9 bits (65), Expect = 2.5
Identities = 22/95 (23%), Positives = 30/95 (31%), Gaps = 18/95 (18%)
Query: 31 AAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTM 90
A V+ G +G G L D G R + S IS ++ PV+ I
Sbjct: 314 ANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLL----ISQLLI----IPVFAIGGAN 365
Query: 91 ----------QGFFVQGLQNSTYTLLIELFPTRWR 115
Q QG+ L+ F T R
Sbjct: 366 VWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQR 400
>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and
metabolism].
Length = 448
Score = 36.1 bits (84), Expect = 0.013
Identities = 25/145 (17%), Positives = 52/145 (35%), Gaps = 25/145 (17%)
Query: 49 GLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIE 108
G+L+DR R M ++I ++ S ++ +L + G+F QG+ I
Sbjct: 85 GVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWF-QGMGWPPCARTI- 142
Query: 109 LFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVG------LVMLSLVSYWFPNWR 162
T W F + R + +G + +L+ ++ WR
Sbjct: 143 ---THW-------------FSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG-GWR 185
Query: 163 DAELVTSLPFVGFSLFYVWFIPESP 187
A + + +L ++ + + P
Sbjct: 186 AAFYFPGIIAIIVALILLFLLRDRP 210
Score = 34.2 bits (79), Expect = 0.048
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 31 AAVVTLYFLGVILGSIPAGLLADRF--GRRVIM-LISFYGQGAISIAIVY-----NRSFP 82
++L+ + + G++ AG L+D+ GRR M LI I+ ++V N S+
Sbjct: 291 NWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLL---ITASLVLYWLAPNGSYL 347
Query: 83 VYLILRTMQGFFVQGLQ 99
+ IL + GF + G Q
Sbjct: 348 LDAILLFIIGFLIYGPQ 364
>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA;
Provisional.
Length = 406
Score = 35.3 bits (82), Expect = 0.020
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 29 WNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILR 88
W +T Y G + G L+DR GRR +ML +AI+ +S + +LR
Sbjct: 49 WVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLR 108
Query: 89 TMQG 92
+QG
Sbjct: 109 FLQG 112
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 34.7 bits (78), Expect = 0.028
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 29 WNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISF--YGQGAISIAIVYNRSFPVYLI 86
+++ +FLG +GS+ AG L DR+GRR +++I + G + +A+ N + LI
Sbjct: 40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLI 99
Query: 87 LRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFP 129
LR +QG GL LL E FP G+A + +
Sbjct: 100 LRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGA 142
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 34.5 bits (80), Expect = 0.032
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 31 AAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTM 90
++T Y LGV LG+ LL R RR ++L ++ SF V L+ R +
Sbjct: 51 GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL 110
Query: 91 QGF 93
G
Sbjct: 111 AGL 113
>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional.
Length = 408
Score = 34.5 bits (79), Expect = 0.035
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 29 WNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILR 88
W+ V ++ FL + S G LADR GR++++L S G G + + + ++ +LILR
Sbjct: 55 WSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILR 114
Query: 89 TMQGFF 94
+ G
Sbjct: 115 ALLGLL 120
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 34.5 bits (80), Expect = 0.051
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 29 WNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIV---YNRSFPVYL 85
A V L+ L +L S PAG LAD+F + ++ I + +++ IV Y F +
Sbjct: 48 LTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAF 107
Query: 86 ILRTMQGFFVQGLQN-----STYTLLIELFPTR 113
+ F+ G Q+ + Y ++ EL
Sbjct: 108 AV-----TFLLGAQSAIYSPAKYGIIPELVGKE 135
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 33.8 bits (78), Expect = 0.059
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 49 GLLADRFGRRVIMLISFYGQGAISI----AIVYNRSFPVYLILRTMQGFFVQGLQNSTYT 104
G L+DR GRR +++I +++ A++ + SF ++ L +
Sbjct: 276 GALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPMGS 335
Query: 105 LLIELFPTRWR 115
L ELFPT R
Sbjct: 336 FLPELFPTEVR 346
Score = 30.3 bits (69), Expect = 0.77
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 31 AAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFY--GQGAISIAIV--YNR---SFPV 83
A FL LG+I G DR GR+ ++I+ G G + I ++ Y P+
Sbjct: 38 FATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPI 97
Query: 84 YLIL-RTMQGFFVQGLQNSTYTLLIELFPTRWR 115
L+L R +QGF + G L E P R
Sbjct: 98 LLLLARLIQGFSLGGEWGGAALYLAEYAPPGKR 130
>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system;
Provisional.
Length = 377
Score = 33.3 bits (77), Expect = 0.099
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 35 TLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFF 94
+ Y LG +G + G +AD FGR+ ++L ++A ++ + +R + G
Sbjct: 33 SAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLA 92
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 365
Score = 32.7 bits (75), Expect = 0.15
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 31 AAVVTLYFLGVILGSIPAGLLADRFGRRVIMLIS 64
+ L ++ S AG LADR+ R+ +M+ +
Sbjct: 37 SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGA 70
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 32.2 bits (74), Expect = 0.20
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 31 AAVVTLYFLGVILGSIPAGLLADRFGRRVIMLI--SFYGQGAISIAIVYNRSFPVYLILR 88
+A ++L+ G LG + G L+DR+GR+ ++L S + G++ + V S L+LR
Sbjct: 44 SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV--ESAAQLLVLR 101
Query: 89 TMQGFFV 95
+Q V
Sbjct: 102 FVQAVGV 108
>gnl|CDD|182611 PRK10642, PRK10642, proline/glycine betaine transporter;
Provisional.
Length = 490
Score = 32.0 bits (73), Expect = 0.25
Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 16/90 (17%)
Query: 38 FLGVILGSIPAGLLADRFGRR-------VIMLISFYGQGAI----SIAIVYNRSFPVYLI 86
FL LG + G+L D++GR+ VIM IS + G I +I I P+ L+
Sbjct: 67 FLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWA----PILLL 122
Query: 87 LRTM-QGFFVQGLQNSTYTLLIELFPTRWR 115
L M QGF V G + E P R R
Sbjct: 123 LCKMAQGFSVGGEYTGASIFVAEYSPDRKR 152
Score = 27.8 bits (62), Expect = 5.6
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 17/86 (19%)
Query: 49 GLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRT-MQGFFVQGLQNSTYTLLI 107
GLL+DRFGRR +++ G++++ ++ + P ++++ + + G GL +++
Sbjct: 307 GLLSDRFGRRPFVIL-----GSVALFVL---AIPAFILINSNVIGLIFAGLL--MLAVIL 356
Query: 108 ELFPTRWRIGVATYTLLIELFPTRWR 133
F GV T L +FPT R
Sbjct: 357 NCF-----TGVMAST-LPAMFPTHIR 376
>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator).
[Transport and binding proteins, Anions].
Length = 366
Score = 30.4 bits (69), Expect = 0.72
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 38 FLGVILGSI--PA-GLLADRFGRRVIMLISFY----GQGAISIAIVYNRSFPVYLILRTM 90
LG +LGS+ P G ++DR G +L+SF G + + +V S V+++L
Sbjct: 268 SLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVA 327
Query: 91 QGFFVQGLQNSTYTLLIELFPTR 113
FF ST+ L+ +F
Sbjct: 328 LFFFSGAGNGSTFALVPHIFRRA 350
>gnl|CDD|236700 PRK10489, PRK10489, enterobactin exporter EntS; Provisional.
Length = 417
Score = 30.3 bits (69), Expect = 0.85
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 31 AAVVTLYFLGVILGSIPAGLLADRFGRRVIMLI 63
VTL + +G + G+LADR+ R+ ++L+
Sbjct: 55 GLSVTLTGGAMFIGLMVGGVLADRYDRKKLILL 87
>gnl|CDD|182163 PRK09952, PRK09952, shikimate transporter; Provisional.
Length = 438
Score = 30.1 bits (68), Expect = 1.1
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 38 FLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSF-------PVYLI-LRT 89
FL LG + G DR GR+ +++++ + G + I SF PV L+ LR
Sbjct: 74 FLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRA 133
Query: 90 MQGFFVQG 97
+QGF V G
Sbjct: 134 IQGFAVGG 141
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter.
This subfamily belongs to the major facilitator family.
Members include the oxalate/formate antiporter of
Oxalobacter formigenes, where one substrate is
decarboxylated in the cytosol into the other to consume
a proton and drive an ion gradient [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 377
Score = 30.1 bits (68), Expect = 1.1
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 35 TLYFLGVILGSIPAGLLADRFGRRVIMLIS--FYGQGAISIAIVYNRSFPVYLILRTMQG 92
TL +G+ + GLLAD+FG R + ++ YG G AI S + +
Sbjct: 45 TLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA--DSLAALYLTYGLAS 102
Query: 93 FFVQGLQNSTYTLLIELFPTRWRIGVAT 120
V ++ FP + G+A+
Sbjct: 103 AGVGIAYGIALNTAVKWFPD--KRGLAS 128
>gnl|CDD|129977 TIGR00899, 2A0120, sugar efflux transporter. This family of
proteins is an efflux system for lactose, glucose,
aromatic glucosides and galactosides, cellobiose,
maltose, a-methyl glucoside and other sugar compounds.
They are found in both gram-negative and gram-postitive
bacteria [Transport and binding proteins, Carbohydrates,
organic alcohols, and acids].
Length = 375
Score = 29.7 bits (67), Expect = 1.3
Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 12/119 (10%)
Query: 48 AGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFV-----------Q 96
AG L RFG+R +ML++ A + + S L+L+ + F+ Q
Sbjct: 255 AGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQ 314
Query: 97 GLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIG-VAWVTEICWTVGLVMLSLV 154
L L+ R+G + + RW V W + V L L L+
Sbjct: 315 DLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLI 373
>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and
metabolism].
Length = 422
Score = 29.6 bits (67), Expect = 1.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 37 YFLGVILGSIPAGLLADRFGRRVIMLISF 65
+F G + S+PAGLL + G + +++
Sbjct: 57 FFGGYFIMSLPAGLLIKKLGYKAGIVLGL 85
>gnl|CDD|218836 pfam05977, MFS_3, Transmembrane secretion effector. This is a
family of transport proteins. Members of this family
include a protein responsible for the secretion of the
ferric chelator, enterobactin, and a protein involved
in antibiotic resistance.
Length = 524
Score = 29.3 bits (66), Expect = 1.7
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 39 LGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIA 74
L + L SIPAG +AD F RR +ML GQ ++IA
Sbjct: 56 LPIFLLSIPAGAIADNFDRRKVMLA---GQLLMAIA 88
>gnl|CDD|221564 pfam12409, P5-ATPase, P5-type ATPase cation transporter. This
domain family is found in eukaryotes, and is typically
between 110 and 126 amino acids in length. The family is
found in association with pfam00122, pfam00702. P-type
ATPases comprise a large superfamily of proteins,
present in both prokaryotes and eukaryotes, that
transport inorganic cations and other substrates across
cell membranes.
Length = 116
Score = 27.9 bits (63), Expect = 2.2
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 130 TRWRIGVAWVTEICWTVGLVMLSLVSYWFPNWR 162
++WR + ++ + T+GL L L+ WFP WR
Sbjct: 13 SKWRTALYYLLCVL-TLGL--LYLLLRWFPRWR 42
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 28.8 bits (65), Expect = 2.8
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 38 FLGVILGSI--PA-GLLADRFGRRVIMLISFYGQGAISIAIV 76
FL ++G++ P G L+DR G R + L F G A++ A++
Sbjct: 261 FLFPLIGALARPLGGWLSDRIGGRRVTLAVFVG-MALAAALL 301
>gnl|CDD|226957 COG4591, LolE, ABC-type transport system, involved in lipoprotein
release, permease component [Cell envelope biogenesis,
outer membrane].
Length = 408
Score = 28.4 bits (64), Expect = 3.3
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 25/101 (24%)
Query: 86 ILRTM--------QGFFVQGLQNSTY--------TLLIELFPTRWRIGVAT---YTLLIE 126
ILR M + F +QGL +L+ L I + +T I
Sbjct: 304 ILRAMGASPSHIMRIFLLQGLIIGLIGALLGVILGVLLALNLNSIIIFIEPLLGHTFGIS 363
Query: 127 LFPTRWRIGVAWVTEICWTVGLVM-LSLVSYWFPNWRDAEL 166
P + ++ + + LSL++ +P R ++L
Sbjct: 364 TLPIELSLL-----DVVLVLVFALLLSLLATLYPARRASKL 399
>gnl|CDD|179614 PRK03633, PRK03633, putative MFS family transporter protein;
Provisional.
Length = 381
Score = 28.5 bits (64), Expect = 3.6
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 42 ILGSIPAGLLADRFGRRVIM 61
ILG P G LADRFGR +++
Sbjct: 249 ILGQWPIGRLADRFGRLLVL 268
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 28.2 bits (63), Expect = 4.0
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 51 LADRFGRRVIMLISFYGQGA--ISIAIVYNR-SFPVYLILRTMQGFFVQ-GLQNSTYTLL 106
L D GR+ I L+ F+ + YN S +L + + FF G +T+ +
Sbjct: 358 LVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVP 417
Query: 107 IELFPTRWR 115
E+FPTR+R
Sbjct: 418 GEVFPTRYR 426
>gnl|CDD|237958 PRK15403, PRK15403, multidrug efflux system protein MdtM;
Provisional.
Length = 413
Score = 28.3 bits (63), Expect = 4.2
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 32 AVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQ 91
A V+LY G + G L+DR GRR +++ A ++ S +LI R +Q
Sbjct: 55 ASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQ 114
Query: 92 G 92
G
Sbjct: 115 G 115
>gnl|CDD|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
flippase. This model describes the P-type ATPase
responsible for transporting phospholipids from one
leaflet of bilayer membranes to the other. These ATPases
are found only in eukaryotes.
Length = 1057
Score = 28.5 bits (64), Expect = 4.2
Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 24/113 (21%)
Query: 79 RSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAW 138
++F +++ Q + Y L V + +GV
Sbjct: 914 KTFWGWMLDGIYQSLVIFFFPMFAY----ILGDFVSSGSVDDF----------SSVGVIV 959
Query: 139 VTEICWTVGLVMLSLVSYWFPNWRDAELVTSLPFVGFSL--FYVWFIPESPLW 189
T + V L + ++ W NW SL + S+ + ++ I S ++
Sbjct: 960 FTALVVIVNLKIALEINRW--NW------ISLITIWGSILVWLIFVIVYSSIF 1004
>gnl|CDD|224369 COG1452, Imp, Organic solvent tolerance protein OstA [Cell envelope
biogenesis, outer membrane].
Length = 784
Score = 28.2 bits (63), Expect = 4.3
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 113 RWRI-GVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPNWRDAELVTSL- 170
W + G Y L + P +GVA+ + CW V L +S + + + + +
Sbjct: 694 NWSVFGRIYYDLRAD-KPLERFLGVAYQSS-CWAVRLG----LSRYSNSRNNNDRLHLKF 747
Query: 171 -PFVGFSLFYV 180
+GF++
Sbjct: 748 DSSIGFNISLR 758
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family
and similar proteins. The integral membrane proteins
from the MATE family are involved in exporting
metabolites across the cell membrane and are responsible
for multidrug resistance (MDR) in many bacteria and
animals. MATE has also been identified as a large
multigene family in plants, where the proteins are
linked to disease resistance. A number of family members
are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 420
Score = 28.1 bits (63), Expect = 4.7
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 39 LGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGL 98
+G+++G++ L+ I+ + + +A+ Y R +Y + + G
Sbjct: 305 IGLLIGAVLGLLIL--LFPEPILSLFTNDPEFLELAVSYLRILAIYYLFVGIGYVLQAGF 362
Query: 99 QNSTYTLL 106
Q + TL
Sbjct: 363 QAAGRTLK 370
>gnl|CDD|182213 PRK10054, PRK10054, putative transporter; Provisional.
Length = 395
Score = 27.8 bits (62), Expect = 6.3
Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 51/159 (32%)
Query: 39 LGVILGSIPAGLLADRFGRRVIMLISF--YGQGAISIAIVYNRSFPV---------YLIL 87
+GV+ S+ G+LAD+F ++ ML++ + G I+I +V N + V Y +
Sbjct: 55 IGVVF-SLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVF 113
Query: 88 RT-MQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTV 146
T ++ +F L +++ T +I YT+L I WTV
Sbjct: 114 STVLKAWFADNLSSTSKT----------KIFSLNYTML----------------NIGWTV 147
Query: 147 G------LVMLSL-VSYWFPNWRDAELVTSLPFVGFSLF 178
G LVM S+ + +W A + ++ P V ++
Sbjct: 148 GPPLGTLLVMQSINLPFWL-----AAICSAFPLVFIQIW 181
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 27.0 bits (60), Expect = 9.1
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 143 CWTVGLVMLSLVSYWFPNWRDAELVTSLPFVGFSLFYV 180
C VG V + L+ P+WR+AELV L +F+
Sbjct: 94 CLKVGAVSVPLL----PSWREAELVWVLNKCQAKMFFA 127
>gnl|CDD|218835 pfam05975, EcsB, Bacterial ABC transporter protein EcsB. This
family consists of several bacterial ABC transporter
proteins which are homologous to the EcsB protein of
Bacillus subtilis. EcsB is thought to encode a
hydrophobic protein with six membrane-spanning helices
in a pattern found in other hydrophobic components of
ABC transporters.
Length = 385
Score = 27.2 bits (61), Expect = 9.3
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 123 LLIELFPTRWRIGVAWVTEICWTVGLVMLSLVSYWFPNWRDAELVTSLPFVGFSLFYVWF 182
LL++ G W I + L++L L+ P L+ ++ F+ + +
Sbjct: 149 LLLKWRILYLVEGKRWDLLIRLILNLLLLYLLFLLAP------LLAAILFLILLVVLLLL 202
Query: 183 IPESPLWKYTKNKIIDFEYLCDDESHR 209
L K K K++D+E L + E R
Sbjct: 203 -----LRKLKKKKLLDWEKLIELEQRR 224
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.143 0.482
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,513,828
Number of extensions: 1215195
Number of successful extensions: 1806
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1770
Number of HSP's successfully gapped: 147
Length of query: 236
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 142
Effective length of database: 6,768,326
Effective search space: 961102292
Effective search space used: 961102292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.7 bits)