RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12153
(236 letters)
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 44.9 bits (107), Expect = 9e-06
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 33 VVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQG 92
V+ Y L + + G ++DR GRR ++L+ ++ V S V + MQG
Sbjct: 40 VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG 99
Query: 93 F 93
Sbjct: 100 M 100
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 43.9 bits (104), Expect = 2e-05
Identities = 27/164 (16%), Positives = 55/164 (33%), Gaps = 28/164 (17%)
Query: 33 VVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAI----VYNRSFPVYLILR 88
++ + G ++DR RV + A+ + + S V +L
Sbjct: 67 ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL 126
Query: 89 TMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAW-VTEICWTVG 147
+ G+F QG+ +P R + + + + R G V VG
Sbjct: 127 FLCGWF-QGMG----------WPPCGRT-MVHW------WSQKER-GGIVSVWNCAHNVG 167
Query: 148 LVMLSLVSYW----FPNWRDAELVTSLPFVGFSLFYVWFIPESP 187
+ L+ F +W A + + + +LF + ++P
Sbjct: 168 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 211
Score = 42.7 bits (101), Expect = 5e-05
Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 6/110 (5%)
Query: 16 PVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRF---GRRVIMLISFYGQGA-- 70
P L + H ++ LY I G++ G ++D+ R +
Sbjct: 276 PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 335
Query: 71 ISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWRIGVAT 120
I + + V +I + GF + G +EL P + G A
Sbjct: 336 IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK-AAGTAA 384
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.001
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 210 EASLNDYSQGSRPAL 224
+ASL Y+ S PAL
Sbjct: 26 QASLKLYADDSAPAL 40
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 38.0 bits (88), Expect = 0.002
Identities = 13/84 (15%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 31 AAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISF--YGQGAIS-IAIVYNRSFPVYLIL 87
+ + ++ G + IPAG+L + + ++ Y GA ++ ++L+
Sbjct: 64 GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVG 123
Query: 88 RTMQGFFVQGLQNSTYTLLIELFP 111
+ + L+ + + L P
Sbjct: 124 LFIIAAGLGCLETAANPFVTVLGP 147
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.013
Identities = 34/167 (20%), Positives = 54/167 (32%), Gaps = 56/167 (33%)
Query: 33 VVTLYFLGVILGSIPAG------LL-ADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYL 85
++ Y I+ P L A G ++ I F GQG Y
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-FGGQGNTD----------DYF 170
Query: 86 ILRTMQGFFVQGLQN--STYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEIC 143
+ L++ TY +L+ I + L EL T E
Sbjct: 171 ----------EELRDLYQTYHVLVGDL-----IKFSA-ETLSELIRTTLD------AEKV 208
Query: 144 WTVGLVMLSLVSYWF--PNWR-DAE-LVT---SLPFVG---FSLFYV 180
+T GL +L W P+ D + L++ S P +G + + V
Sbjct: 209 FTQGLNILE----WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV 251
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.21
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 28/92 (30%)
Query: 147 GLVMLSLVSYWF-------PNWRDAELVTSLP--FVGFSLF---------YVWFIPESPL 188
L+ L Y++ N E +T F+ F F W S L
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-FLEQKIRHDSTAWNASGSIL 521
Query: 189 WKYTKNKIIDFE----YLCDDESHREASLNDY 216
N + + Y+CD++ E +N
Sbjct: 522 -----NTLQQLKFYKPYICDNDPKYERLVNAI 548
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics;
HET: FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 28.7 bits (65), Expect = 1.5
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 41 VILGSIPAGL-----LADRFGRRVIMLISFYGQGAISIAI 75
+I+G AGL L R + ++++ + + +
Sbjct: 6 IIIGGSYAGLSAALQLG-RARKNILLVDAGERRNRFASHS 44
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function;
2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Length = 217
Score = 26.8 bits (59), Expect = 5.5
Identities = 23/109 (21%), Positives = 37/109 (33%), Gaps = 19/109 (17%)
Query: 13 NGEPV------LLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIM----- 61
+GEP +L L AVV Y+ G++LG G L +G V
Sbjct: 75 DGEPAGTAGKPMLAQLMGSGVGEITAVVVRYYGGILLG---TGGLVKAYGGGVNQALRQL 131
Query: 62 -LISFYGQGAISIAIVYNRSFPVYLILRTMQGFFVQGLQNSTYTLLIEL 109
++ Y++ + +L G + NS Y + L
Sbjct: 132 TTQRKTPLTEYTLQCEYHQLTGIEALLGQCDGK----IINSDYQAFVLL 176
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.143 0.482
Gapped
Lambda K H
0.267 0.0414 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,844,371
Number of extensions: 225733
Number of successful extensions: 580
Number of sequences better than 10.0: 1
Number of HSP's gapped: 572
Number of HSP's successfully gapped: 19
Length of query: 236
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 145
Effective length of database: 4,160,982
Effective search space: 603342390
Effective search space used: 603342390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)