RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12153
         (236 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 46.2 bits (108), Expect = 1e-06
 Identities = 16/146 (10%), Positives = 40/146 (27%), Gaps = 15/146 (10%)

Query: 33  VVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIV----YNRSFPVYLILR 88
            ++   +         G ++DR   RV +        A+ + +        S  V  +L 
Sbjct: 64  ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL 123

Query: 89  TMQGFFVQGLQNSTYTLLIELFPTRWRIGVATYTL-----------LIELFPTRWRIGVA 137
            + G+F           ++  +  + R G+ +              L+ L    W     
Sbjct: 124 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWH 183

Query: 138 WVTEICWTVGLVMLSLVSYWFPNWRD 163
               +     +++         +   
Sbjct: 184 AALYMPAFCAILVALFAFAMMRDTPQ 209



 Score = 28.1 bits (61), Expect = 1.1
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 5/105 (4%)

Query: 16  PVLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAI 75
           P  L  + H     ++    LY    I G++  G ++D+  R        +    ++IA 
Sbjct: 273 PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 332

Query: 76  V-----YNRSFPVYLILRTMQGFFVQGLQNSTYTLLIELFPTRWR 115
           +        +  V +I   + GF + G         +EL P +  
Sbjct: 333 IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAA 377


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 38.6 bits (88), Expect = 4e-04
 Identities = 17/163 (10%), Positives = 38/163 (23%), Gaps = 10/163 (6%)

Query: 33  VVTLYFLGVILGSIPAGLLADRFGRRVIMLISFYGQGAISIAIVYNRSFPVYLILRTMQG 92
           +     L  +L     GLL+D+ G R  +L    G   +          P+      +  
Sbjct: 48  IFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGS 107

Query: 93  FFVQGLQNSTYTLLIELFPTRWRIGVATYTLLIELFPTRWRIGVAWVTEICWTVGLVMLS 152
                     +                      ++               C    L    
Sbjct: 108 IVGGIYLGFCFNAGAPAVEAFIE----------KVSRRSNFEFGRARMFGCVGWALGASI 157

Query: 153 LVSYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNK 195
           +   +  N +    + S   +  ++   +   ++P      N 
Sbjct: 158 VGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANA 200


>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH,
           C-terminal domain {Thermotoga maritima [TaxId: 2336]}
          Length = 193

 Score = 28.5 bits (63), Expect = 0.60
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 153 LVSYWFPNWRDAELVTSLPFVGFSLFYVWFIPESPLWKYTKNKIID 198
           +VS   PN      ++ +P    +L Y   +PE   +  ++N+++D
Sbjct: 19  VVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNELLD 64


>d1vi7a1 d.14.1.11 (A:3-137) Hypothetical protein YigZ, N-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 135

 Score = 27.5 bits (61), Expect = 0.91
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 9/57 (15%)

Query: 13  NGEP------VLLWHLYHHECKWNAAVVTLYFLGVILGSIPAGLLADRFGRRVIMLI 63
           +GEP       +L  L         AVV  Y+ G++LG    G L   +G  V   +
Sbjct: 73  DGEPAGTAGKPMLAQLMGSGVGEITAVVVRYYGGILLG---TGGLVKAYGGGVNQAL 126


>d1gv8a_ c.94.1.2 (A:) Ovotransferrin {Duck (Anas platyrhynchos)
           [TaxId: 8839]}
          Length = 159

 Score = 27.2 bits (60), Expect = 1.1
 Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 5/47 (10%)

Query: 180 VWFIPESPLWKYTKNKIIDFEYLCDDESHREASLNDYSQ---GSRPA 223
           V F+  + + +    +  ++E LC D +     ++ Y         A
Sbjct: 115 VAFVKHTTVQENAPEEKDEYELLCLDGT--RQPVDSYKTCNWARVAA 159


>d2cvea1 d.14.1.11 (A:2-124) Hypothetical protein TTHA1053,
           N-terminal domain {Thermus thermophilus [TaxId: 274]}
          Length = 123

 Score = 25.5 bits (56), Expect = 3.4
 Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 6   CDEIDCVNGEPVLLWHLYHHECKWNAAVVTLYFLGVILGS 45
             E     G P+L   +        A +V  YF GV LG+
Sbjct: 62  DGEPSGTAGRPILH-AIEAQGLDRVAVLVVRYFGGVKLGA 100


>d1fnua2 d.15.6.1 (A:108-221) Streptococcal pyrogenic exotoxin A1
           {Streptococcus pyogenes [TaxId: 1314]}
          Length = 114

 Score = 25.1 bits (55), Expect = 3.9
 Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 1/29 (3%)

Query: 173 VGFSLFYV-WFIPESPLWKYTKNKIIDFE 200
             F  F    F     L  Y  N+ +D +
Sbjct: 75  FWFDFFPEPEFTQSKYLMIYKDNETLDNK 103


>d2g9hd2 d.15.6.1 (D:87-216) Enterotoxin type I {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 130

 Score = 24.9 bits (54), Expect = 6.5
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 173 VGFSLFYV-WFIPESPLWKYTKNKIIDFEYLCDDESHREASLN 214
             + LFY    +P S L  Y  NKII+      ++ H +  ++
Sbjct: 90  FSYDLFYTGDGVPVSFLKIYEDNKIIE-----SEKFHLDVEIS 127


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.143    0.482 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 957,329
Number of extensions: 44570
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 21
Length of query: 236
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 153
Effective length of database: 1,268,006
Effective search space: 194004918
Effective search space used: 194004918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.9 bits)