RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12154
         (214 letters)



>gnl|CDD|217255 pfam02862, DDHD, DDHD domain.  The DDHD domain is 180 residues long
           and contains four conserved residues that may form a
           metal binding site. The domain is named after these four
           residues. This pattern of conservation of metal binding
           residues is often seen in phosphoesterase domains. This
           domain is found in retinal degeneration B proteins, as
           well as a family of probable phospholipases. It has been
           shown that this domain is found in a longer C terminal
           region that binds to PYK2 tyrosine kinase. These
           proteins have been called N-terminal domain-interacting
           receptor (Nir1, Nir2 and Nir3). This suggests that this
           region is involved in functionally important
           interactions in other members of this family.
          Length = 219

 Score = 30.8 bits (70), Expect = 0.40
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 198 LSFQPRMFFAFGSPVGV 214
           L F+   FFA GSP+G+
Sbjct: 1   LDFEVENFFAVGSPLGL 17


>gnl|CDD|173852 cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C.
           DszC is a flavin reductase dependent enzyme, which
           catalyzes the first two steps of DBT desulfurization in
           mesophilic bacteria. DszC converts DBT to DBT-sulfoxide,
           which is then converted to DBT-sulfone. Bacteria with
           this enzyme are candidates for the removal of organic
           sulfur compounds from fossil fuels, which pollute the
           environment. An equivalent enzyme tdsC, is found in
           thermophilic bacteria. This alignment also contains a
           closely related uncharacterized subgroup.
          Length = 377

 Score = 30.8 bits (70), Expect = 0.49
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 9/47 (19%)

Query: 12  RPVVEVVDDFRSISLTLTASHFKSAADLGTLGRVEMLPISWHEALHS 58
           RP + VVDD+      LTAS        GT+   + + +   E L  
Sbjct: 169 RPGITVVDDWDGFGQRLTAS--------GTV-TFDNVRVEPDEVLPR 206


>gnl|CDD|177843 PLN02191, PLN02191, L-ascorbate oxidase.
          Length = 574

 Score = 28.4 bits (63), Expect = 2.9
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 15/96 (15%)

Query: 52  WHEALHSEESGIDKK-LKAITLP-----------SIPKLRYFTNDTLLDVLFYTSPVYCE 99
           WHE++ S+E G+  K ++ I              +      F+N T L +  +     C 
Sbjct: 165 WHESIPSQELGLSSKPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCA 224

Query: 100 RIITAVAKEMNRLYAIFLARNPTYEG-GVSVGGHSL 134
                V  E N+ Y I LA         ++V GH L
Sbjct: 225 PQTLRV--EPNKTYRIRLASTTALASLNLAVQGHKL 258


>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
          Length = 1560

 Score = 27.3 bits (60), Expect = 8.2
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 138 ILFDLLSHQKPVGGLNSDDVKDSDTDDETLGKSPLLKGNSYISIP 182
           +LFD+  + + +G       K+SD ++     SPLLKG+  I IP
Sbjct: 747 VLFDIFQYNEKIGH------KESDHNEHGNSLSPLLKGSVDIIIP 785


>gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19. Peptidase
           C19 contains ubiquitinyl hydrolases. They are
           intracellular peptidases that remove ubiquitin molecules
           from polyubiquinated peptides by cleavage of isopeptide
           bonds. They hydrolyze bonds involving the carboxyl group
           of the C-terminal Gly residue of ubiquitin. The purpose
           of the de-ubiquitination is thought to be editing of the
           ubiquitin conjugates, which could rescue them from
           degradation, as well as recycling of the ubiquitin. The
           ubiquitin/proteasome system is responsible for most
           protein turnover in the mammalian cell, and with over 50
           members, family C19 is one of the largest families of
           peptidases in the human genome.
          Length = 268

 Score = 26.7 bits (59), Expect = 9.5
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 81  FTNDTLLDVLFYTSPVYCERIITAVA-KEMNRL 112
           + N +LL +L++  P      I  VA  + + L
Sbjct: 26  YCN-SLLQLLYFIPPFRNFTAIILVACPKESCL 57


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0671    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,065,485
Number of extensions: 1034799
Number of successful extensions: 701
Number of sequences better than 10.0: 1
Number of HSP's gapped: 701
Number of HSP's successfully gapped: 13
Length of query: 214
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 121
Effective length of database: 6,812,680
Effective search space: 824334280
Effective search space used: 824334280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)