RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12154
(214 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 3e-04
Identities = 27/141 (19%), Positives = 50/141 (35%), Gaps = 36/141 (25%)
Query: 7 CDLKFRP-----VVEVVDDFRSISLTLTASHFKSAADLGTLGR--VEMLPISWHEALHSE 59
D F+ ++++V + ++LT+ HF G G+ E E +
Sbjct: 1649 ADNHFKDTYGFSILDIVINN-PVNLTI---HFG-----GEKGKRIRENYSAMIFETIVDG 1699
Query: 60 ESGIDKKLKAITLPSIPKLRYFTNDTLLDVLFYTSPVYCERIITAVAKEMNRLYAIF-LA 118
+ +K K I + + LL +T P +T + A F
Sbjct: 1700 KLKTEKIFKEIN-EHSTSYTFRSEKGLLSATQFTQPA-----LTLME------KAAFEDL 1747
Query: 119 RNPTYEGGV----SVGGHSLG 135
++ +G + + GHSLG
Sbjct: 1748 KS---KGLIPADATFAGHSLG 1765
Score = 36.6 bits (84), Expect = 0.006
Identities = 40/224 (17%), Positives = 67/224 (29%), Gaps = 65/224 (29%)
Query: 11 FRPVVE-VVDDFRSISL------TLTASHFKSAADLGTLGRVEMLPISWHEALHSEESGI 63
F V+ + +F + L L A D TL + + L ++ A +
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAK-LLQEND-TTLVKTKELIKNYITARIMAKRPF 137
Query: 64 DKKLKAITLPSIP----KL-----------RYFTNDTLLDVLFYTSPVYCERIITAVAKE 108
DKK + ++ +L YF + L D L+ T V +I A+
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF--EELRD-LYQTYHVLVGDLIKFSAET 194
Query: 109 MNRLYAIFLARNPTYEGGVSVGGHSLGSLILFDLLS-HQKPVGGLNSDDVKDSDTDDETL 167
++ L L + G ++L + P + D + L
Sbjct: 195 LSELIRTTLDAEKVFTQG-------------LNILEWLENP----------SNTPDKDYL 231
Query: 168 GKSPLLKGNSYISIPTATLGTSAPLIRY----HQLSFQPRMFFA 207
P IS P + L Y L F P +
Sbjct: 232 LSIP-------ISCPLIGV-IQ--LAHYVVTAKLLGFTPGELRS 265
Score = 35.8 bits (82), Expect = 0.009
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 18/61 (29%)
Query: 8 DLKFRPVVEVVD--DFRSISLTLTASHFKSAADLGTLGRVEML---PISWHEALHSEESG 62
D++ PV + D D R +S +++ V+ + P+ W + +
Sbjct: 454 DIQI-PVYDTFDGSDLRVLSGSISERI------------VDCIIRLPVKWETTTQFKATH 500
Query: 63 I 63
I
Sbjct: 501 I 501
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.024
Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 34/126 (26%)
Query: 32 HFKSA--ADLGTLGRVEMLPISWHEALHSEESGIDKKLKAITLPSIPKLRYFTNDTLLDV 89
H K+ + TL R+ L + +++K++ + +TL +
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRF----------LEQKIRHDSTAW--NASGSILNTLQQL 527
Query: 90 LFY------TSPVYCERIITAVAKEMNRLYAIFLARNPTYEGGVSVGGHSLGSLILFDLL 143
FY P Y ER++ A+ FL P E + ++ L+ L+
Sbjct: 528 KFYKPYICDNDPKY-ERLVNAILD--------FL---PKIEENLICSKYT--DLLRIALM 573
Query: 144 SHQKPV 149
+ + +
Sbjct: 574 AEDEAI 579
Score = 28.3 bits (62), Expect = 2.1
Identities = 21/152 (13%), Positives = 47/152 (30%), Gaps = 33/152 (21%)
Query: 53 HEALHSEESGIDKKLKAITLPSIPKLRYFTNDTLLDVLFYTSPVYCERIITAVAKEMNRL 112
H + E + K I L F + + + + I++ +E++
Sbjct: 4 HHHMDFETGEHQYQYKDI-------LSVFEDAFVDNFDCKDVQDMPKSILSK--EEIDH- 53
Query: 113 YAIFLARNPTYEGGVSVGGHSLGSLILFDLLSHQKPVGGLNSDDVKDSDTDD-------- 164
I ++++ G+L LF L K + V++ +
Sbjct: 54 --IIMSKDAV-----------SGTLRLFWTLL-SKQEEMV-QKFVEEVLRINYKFLMSPI 98
Query: 165 ETLGKSPLLKGNSYISIPTATLGTSAPLIRYH 196
+T + P + YI + +Y+
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Score = 26.7 bits (58), Expect = 7.9
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 42/97 (43%)
Query: 79 RYFTNDTLLDVL--FYT--SPVYCERI---------ITAVAKEMNRLYAIFLARNPTYEG 125
+ +T+L++L P + R I ++ E+ RL ++ YE
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL-----KSKPYE- 244
Query: 126 GVSVGGHSLGSLILFDLLSHQKPVGGLNSDDVKDSDT 162
+ L L+L +V+++
Sbjct: 245 ------NCL--LVL---------------LNVQNAKA 258
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF,
tethering complex, RAB activation, GU nucleotide
exchange factor; HET: PLM; 3.70A {Saccharomyces
cerevisiae}
Length = 219
Score = 28.1 bits (61), Expect = 2.1
Identities = 15/124 (12%), Positives = 37/124 (29%), Gaps = 1/124 (0%)
Query: 1 MSPGSFCDLKFRPVVEVVDDFRSISLTLTASHFKSAADLGTLGRVEMLPISWHEALHSEE 60
MS + + FK + L + +
Sbjct: 75 MSSNRSDTRNGGGNNNKHTNNEKLGSFKGDDFFKEPFTNWNKSGLRQLCTDQFT-MFIYQ 133
Query: 61 SGIDKKLKAITLPSIPKLRYFTNDTLLDVLFYTSPVYCERIITAVAKEMNRLYAIFLARN 120
+ K AI+ +P+ + T ++ +I +++ LY+ ++ ++
Sbjct: 134 TLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKD 193
Query: 121 PTYE 124
P+Y
Sbjct: 194 PSYS 197
>1q2h_A APS, adaptor protein with pleckstrin homology and SRC homology 2
domains; signal transduction, signaling protein; 1.70A
{Homo sapiens} SCOP: a.34.4.1
Length = 69
Score = 26.2 bits (57), Expect = 2.5
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 97 YCERIITAVAKEMNRLYAIFLARNPTYEGGVS 128
+CE A A + + FL NP Y+ +
Sbjct: 10 FCELHAQAAAVDFAHKFCRFLRDNPAYDTPDA 41
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A
{Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Length = 176
Score = 26.8 bits (60), Expect = 3.7
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 127 VSVGGHSLGSLI-LFDLLSHQKPVGGLNSDDVKD 159
V+VG G+ + L +KPV L + +
Sbjct: 112 VAVGM-GPGTAAEVALALKAKKPVVLLGTQPEAE 144
>1uwc_A Feruloyl esterase A; hydrolase, serine esterase, xylan degradation;
HET: NAG FER; 1.08A {Aspergillus niger} SCOP: c.69.1.17
PDB: 1uza_A* 2hl6_A* 2ix9_A* 1usw_A* 2bjh_A*
Length = 261
Score = 26.8 bits (59), Expect = 5.7
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 103 TAVAKEMNRLYAIFLARNPTYEGGVSVGGHSLG----SLILFDLLSHQKPV 149
+V ++ L ++ P Y ++V GHSLG +L L + V
Sbjct: 105 ISVQDQVESLVKQQASQYPDYA--LTVTGHSLGASMAALTAAQLSATYDNV 153
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner
membrane, membrane, phosphoprotein, transferase,
transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1
PDB: 1ojg_A
Length = 142
Score = 25.9 bits (57), Expect = 6.8
Identities = 6/44 (13%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 153 NSDDVKDSDTDDETLGKS-------PLLKGNSYISIPTATLGTS 189
+ ++ S + + +G+ L G ++I L +
Sbjct: 63 DMQSLRYSHPEAQRIGQPFKGDDILKALNGEENVAINRGFLAQA 106
>1tgl_A Triacyl-glycerol acylhydrolase; carboxylic esterase; 1.90A
{Rhizomucor miehei} SCOP: c.69.1.17 PDB: 4tgl_A 5tgl_A*
3tgl_A
Length = 269
Score = 26.4 bits (58), Expect = 6.9
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 103 TAVAKEMNRLYAIFLARNPTYEGGVSVGGHSLG----SLILFDLLSHQKPVGGLN 153
V E+ + P+Y+ V+V GHSLG L DL ++ + N
Sbjct: 116 GEVQNELVATVLDQFKQYPSYK--VAVTGHSLGGATALLCALDLYQREEGLSSSN 168
>2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein,
BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics,
PSI-2; 1.72A {Homo sapiens}
Length = 194
Score = 25.9 bits (56), Expect = 8.8
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 131 GHSLGSLILFDLLSHQKPVGGLNSDDVKDSDTDDE 165
GHS G++ V + SD DE
Sbjct: 73 GHSSGAIAAMRYAE-THRVYAIVLVSAYTSDLGDE 106
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.403
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,255,594
Number of extensions: 187596
Number of successful extensions: 346
Number of sequences better than 10.0: 1
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 17
Length of query: 214
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 124
Effective length of database: 4,188,903
Effective search space: 519423972
Effective search space used: 519423972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)