Query psy12155
Match_columns 78
No_of_seqs 101 out of 297
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 20:08:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0e_A Sodium/hydrogen exchang 17.0 22 0.00077 17.6 -0.4 9 36-44 12-20 (33)
2 2jxc_B Stonin-2, stoned B; end 16.2 52 0.0018 17.5 0.9 21 47-67 17-37 (45)
3 2lnu_A Uncharacterized protein 15.2 1.3E+02 0.0046 20.3 3.1 31 37-69 44-74 (190)
4 1dw9_A Cyanate lyase; cyanate 15.1 27 0.00092 23.2 -0.5 13 39-51 89-101 (156)
5 1b4g_A Potassium channel; inac 14.9 43 0.0015 16.5 0.4 17 58-74 2-18 (30)
6 2lok_A Uncharacterized protein 14.2 1.5E+02 0.0051 20.2 3.1 32 37-70 51-82 (197)
7 2e72_A POGO transposable eleme 12.5 69 0.0023 17.5 0.8 15 23-37 11-25 (49)
8 1m93_A Serine proteinase inhib 10.7 1.7E+02 0.0059 15.3 2.1 10 6-15 18-27 (55)
9 4az3_A Lysosomal protective pr 9.7 82 0.0028 22.6 0.6 12 29-40 244-255 (300)
10 4g7x_A Putative uncharacterize 9.5 70 0.0024 19.5 0.1 9 2-10 25-33 (105)
No 1
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=16.98 E-value=22 Score=17.63 Aligned_cols=9 Identities=56% Similarity=0.863 Sum_probs=6.8
Q ss_pred eccCCCccc
Q psy12155 36 IFHPFDPVA 44 (78)
Q Consensus 36 Ifhp~DPvA 44 (78)
|..++||||
T Consensus 12 iis~TDpVa 20 (33)
T 2l0e_A 12 IISAVDPVA 20 (33)
T ss_dssp HHTTCCHHH
T ss_pred HccCCChHH
Confidence 556889886
No 2
>2jxc_B Stonin-2, stoned B; endocytosis, calcium, chromosomal rearrangement, cytoplasm, membrane, phosphorylation, polymorphism, proto-oncogene; NMR {Homo sapiens}
Probab=16.21 E-value=52 Score=17.52 Aligned_cols=21 Identities=14% Similarity=0.444 Sum_probs=16.4
Q ss_pred cccccccccccCCCeeecccC
Q psy12155 47 IEPLIVPAMEHVRPVQVPHHK 67 (78)
Q Consensus 47 lEPli~~~~~~~~P~~iP~~~ 67 (78)
-+|++|..+++++|-.|-.++
T Consensus 17 tNPFLde~l~dvqPSPINPFs 37 (45)
T 2jxc_B 17 TNPFLNETLQDVQPSPINPFS 37 (45)
T ss_dssp SCSSSSTTTSCCCCCTTCSCT
T ss_pred CCcchhhhHHhCCCCCCChHH
Confidence 368999999999887775543
No 3
>2lnu_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Haloarcula marismortui}
Probab=15.24 E-value=1.3e+02 Score=20.29 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=23.0
Q ss_pred ccCCCccccccccccccccccCCCeeecccCCc
Q psy12155 37 FHPFDPVAYRIEPLIVPAMEHVRPVQVPHHKGR 69 (78)
Q Consensus 37 fhp~DPvAyRlEPli~~~~~~~~P~~iP~~~~~ 69 (78)
|.|.|| +||++--+.+ +..-+++.|+...|+
T Consensus 44 ~fp~Dp-~wrv~a~~~~-~~~~~~~~v~t~~g~ 74 (190)
T 2lnu_A 44 YFDPDP-DYRVEATVTV-HETPESVDLETSDDR 74 (190)
T ss_dssp CCCCCG-GGEEEEEEEE-CSSCCEEEEECSSSS
T ss_pred cCCCCC-CEEEEEEEEE-CCCCcEEEEEecCCc
Confidence 567888 8888877764 345678899988764
No 4
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=15.15 E-value=27 Score=23.20 Aligned_cols=13 Identities=38% Similarity=0.843 Sum_probs=10.1
Q ss_pred CCCcccccccccc
Q psy12155 39 PFDPVAYRIEPLI 51 (78)
Q Consensus 39 p~DPvAyRlEPli 51 (78)
|+||+-||+--.|
T Consensus 89 ptdP~iYR~yE~v 101 (156)
T 1dw9_A 89 PTDPTMYRFYEML 101 (156)
T ss_dssp CCSHHHHHHHHHH
T ss_pred CCCCeehhHHHHH
Confidence 7899999985443
No 5
>1b4g_A Potassium channel; inactivation GATE, phosphorylation; HET: SEP; NMR {Homo sapiens} SCOP: j.12.1.1 PDB: 1b4i_A* 1ztn_A
Probab=14.93 E-value=43 Score=16.52 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=11.9
Q ss_pred CCCeeecccCCcceeee
Q psy12155 58 VRPVQVPHHKGRKRMHL 74 (78)
Q Consensus 58 ~~P~~iP~~~~~~r~h~ 74 (78)
+.|+-+..+.+||+-|-
T Consensus 2 lssvcvSs~~gRk~gnk 18 (30)
T 1b4g_A 2 ISSVCVSSYRGRKSGNK 18 (30)
T ss_dssp BTTTBCCCSCSCSSSCC
T ss_pred CCCccchhhhcccccCC
Confidence 45667778888887663
No 6
>2lok_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Halobacterium SP} PDB: 4dlh_A
Probab=14.23 E-value=1.5e+02 Score=20.23 Aligned_cols=32 Identities=16% Similarity=0.422 Sum_probs=23.1
Q ss_pred ccCCCccccccccccccccccCCCeeecccCCcc
Q psy12155 37 FHPFDPVAYRIEPLIVPAMEHVRPVQVPHHKGRK 70 (78)
Q Consensus 37 fhp~DPvAyRlEPli~~~~~~~~P~~iP~~~~~~ 70 (78)
|.|.|| +||++--+.+ +..-+++.|+...|+.
T Consensus 51 ~fp~Dp-~wrv~a~~~p-~~~~~~~~v~t~~g~~ 82 (197)
T 2lok_A 51 YFDIDA-SFRVAARYQP-ARDPEAVELETTRGPP 82 (197)
T ss_dssp CCCCCS-TTEEEEEEEE-CSSCCEEEEBCSSSSC
T ss_pred cCCCCC-CEEEEEEEEE-CCCCcEEEEEecCCce
Confidence 567888 8888877754 3456788999887643
No 7
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=12.53 E-value=69 Score=17.49 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=12.3
Q ss_pred CcccCCCcCceeeec
Q psy12155 23 EEFEFPTCPKFYNIF 37 (78)
Q Consensus 23 ~~~~~p~c~~~yNIf 37 (78)
..+.+|+|..-||+.
T Consensus 11 ~~~~CPrCn~~f~~~ 25 (49)
T 2e72_A 11 GRKICPRCNAQFRVT 25 (49)
T ss_dssp SCCCCTTTCCCCSSH
T ss_pred CceeCCcccccccch
Confidence 467899999999873
No 8
>1m93_A Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE inhibitor, viral protein; 1.65A {Cowpox virus} SCOP: e.1.1.1
Probab=10.65 E-value=1.7e+02 Score=15.33 Aligned_cols=10 Identities=20% Similarity=0.076 Sum_probs=7.1
Q ss_pred cChHHHHHHh
Q psy12155 6 GSPVGMFVNV 15 (78)
Q Consensus 6 GSPlg~fl~l 15 (78)
=||+++..++
T Consensus 18 ~SP~Si~~aL 27 (55)
T 1m93_A 18 ISPPSISSVL 27 (55)
T ss_dssp ECHHHHHHHH
T ss_pred ECHHHHHHHH
Confidence 3898877654
No 9
>4az3_A Lysosomal protective protein 32 kDa chain; hydrolase, drug discovery, carboxypeptidase, cardiovascular; HET: NAG S35; 2.04A {Homo sapiens} PDB: 4az0_A*
Probab=9.68 E-value=82 Score=22.56 Aligned_cols=12 Identities=25% Similarity=0.681 Sum_probs=9.7
Q ss_pred CcCceeeeccCC
Q psy12155 29 TCPKFYNIFHPF 40 (78)
Q Consensus 29 ~c~~~yNIfhp~ 40 (78)
.|.++|||+.++
T Consensus 244 ~~~N~YdI~~~C 255 (300)
T 4az3_A 244 SGLNIYNLYAPC 255 (300)
T ss_dssp SSCCTTCTTSCC
T ss_pred CCCChhhccCcC
Confidence 467899999886
No 10
>4g7x_A Putative uncharacterized protein; membrane, protein binding-protein binding complex; 1.44A {Vibrio cholerae}
Probab=9.47 E-value=70 Score=19.46 Aligned_cols=9 Identities=56% Similarity=1.209 Sum_probs=6.7
Q ss_pred EEeecChHH
Q psy12155 2 FFAFGSPVG 10 (78)
Q Consensus 2 lF~~GSPlg 10 (78)
||-+|||+-
T Consensus 25 lfgfgspiv 33 (105)
T 4g7x_A 25 LFGFGSPIV 33 (105)
T ss_dssp EEETTCCCC
T ss_pred hhhcCcHHH
Confidence 678888863
Done!