RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12155
         (78 letters)



>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate
           phosphoribosyltransferase EF2626 {Enterococcus faecalis
           [TaxId: 1351]}
          Length = 345

 Score = 26.5 bits (58), Expect = 0.29
 Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 6/50 (12%)

Query: 19  DVLGEEFEFPTCPKFYNIFHPFDP------VAYRIEPLIVPAMEHVRPVQ 62
           D +    E P   +   +FHP           +   P++       + V 
Sbjct: 239 DYVTLWNEDPRQEEEIYMFHPVHTFINKYVRDFEARPVLQDIFVEGKRVY 288


>d1ia9a_ d.144.1.5 (A:) Trp Ca-channel kinase domain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 278

 Score = 23.3 bits (50), Expect = 4.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 39 PFDPVAYRIEPLIVPAMEHVRP 60
          PF PV  R EP+ V  +E   P
Sbjct: 19 PFVPVPPRGEPVTVYRLEESSP 40


>d1vmia_ c.77.1.5 (A:) Ethanolamine utilization protein EutD
           {Escherichia coli [TaxId: 562]}
          Length = 329

 Score = 22.4 bits (47), Expect = 9.7
 Identities = 6/33 (18%), Positives = 15/33 (45%)

Query: 24  EFEFPTCPKFYNIFHPFDPVAYRIEPLIVPAME 56
           +F+    P+      P  P+  +   ++ P++E
Sbjct: 245 QFDAAFVPEVAAQKAPASPLQGKANVMVFPSLE 277


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.149    0.496 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 334,844
Number of extensions: 13765
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 5
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.2 bits)