BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12157
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 71 AFTTGQWHKTI-PLDNGEEVIMYSVKTIPLDNGEEVIMYSVKVRVSTY 117
+ G + TI PLD+ EE+ YS P+ +GEEV++Y K ++ +
Sbjct: 305 GYQGGLFRITITPLDSEEEIFTYS--DHPIHSGEEVLVYVRKDKIKVF 350
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 71 AFTTGQWHKTI-PLDNGEEVIMYSVKTIPLDNGEEVIMYSVKVRVSTY 117
+ G + TI PLD+ EE+ YS P+ +GEEV++Y K ++ +
Sbjct: 305 GYQGGLFRITITPLDSEEEIFTYS--DHPIHSGEEVLVYVRKDKIKVF 350
>pdb|2C9J|A Chain A, Structure Of The Fluorescent Protein Cmfp512 At 1.35a From
Cerianthus Membranaceus
pdb|2C9J|B Chain B, Structure Of The Fluorescent Protein Cmfp512 At 1.35a From
Cerianthus Membranaceus
pdb|2C9J|C Chain C, Structure Of The Fluorescent Protein Cmfp512 At 1.35a From
Cerianthus Membranaceus
pdb|2C9J|D Chain D, Structure Of The Fluorescent Protein Cmfp512 At 1.35a From
Cerianthus Membranaceus
pdb|2C9J|E Chain E, Structure Of The Fluorescent Protein Cmfp512 At 1.35a From
Cerianthus Membranaceus
pdb|2C9J|F Chain F, Structure Of The Fluorescent Protein Cmfp512 At 1.35a From
Cerianthus Membranaceus
pdb|2C9J|G Chain G, Structure Of The Fluorescent Protein Cmfp512 At 1.35a From
Cerianthus Membranaceus
pdb|2C9J|H Chain H, Structure Of The Fluorescent Protein Cmfp512 At 1.35a From
Cerianthus Membranaceus
Length = 223
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 53 YIPYEERVADLLEGEFKAAFTTGQWHKTIPLDNGEEVIMYS 93
+ Y E +AD +G F AF QW++ I ++G + M S
Sbjct: 66 FTKYPEGIADYFKGSFPEAF---QWNRRIEFEDGGVINMSS 103
>pdb|1SHW|A Chain A, Ephb2 EPHRINA5 COMPLEX STRUCTURE
pdb|1SHX|A Chain A, Ephrin A5 Ligand Structure
pdb|1SHX|B Chain B, Ephrin A5 Ligand Structure
pdb|3MX0|B Chain B, Crystal Structure Of Epha2 Ectodomain In Complex With
Ephrin-A5
pdb|3MX0|D Chain D, Crystal Structure Of Epha2 Ectodomain In Complex With
Ephrin-A5
Length = 138
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 102 GEEVIMYSVKVRVSTYVPQWHKTIPLDNGEEVIMYSVKMEAVTGC 146
G+ I + + + P + ++P D E ++Y V + + C
Sbjct: 19 GDYHIDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSAC 63
>pdb|2X11|B Chain B, Crystal Structure Of The Complete Epha2 Ectodomain In
Complex With Ephrin A5 Receptor Binding Domain
Length = 177
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 102 GEEVIMYSVKVRVSTYVPQWHKTIPLDNGEEVIMYSVKMEAVTGC 146
G+ I + + + P + ++P D E ++Y V + + C
Sbjct: 48 GDYHIDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSAC 92
>pdb|2NYK|A Chain A, Crystal Structure Of M157 From Mouse Cytomegalovirus
Length = 285
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 67 EFKAAFTTGQWHK-TIPLDNGEEVIMYSV 94
EF+ T G HK TI +DNG V+++ V
Sbjct: 24 EFEVTVTRGGVHKRTISVDNGRPVVVWDV 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,446,329
Number of Sequences: 62578
Number of extensions: 174923
Number of successful extensions: 512
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 15
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)