BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12157
(148 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y6Y8|S23IP_HUMAN SEC23-interacting protein OS=Homo sapiens GN=SEC23IP PE=1 SV=1
Length = 1000
Score = 105 bits (263), Expect = 8e-23, Method: Composition-based stats.
Identities = 41/83 (49%), Positives = 60/83 (72%)
Query: 15 GRYDVHITERERRAVYWTETPSEVRRCSWFYKASLEARYIPYEERVADLLEGEFKAAFTT 74
GRYDV++ +R R+A YW E P+EVRRC+WFYK ++R+IPY E ++ LE E+K A TT
Sbjct: 317 GRYDVYLYDRIRKAAYWEEEPAEVRRCTWFYKGDTDSRFIPYTEEFSEKLEAEYKKAVTT 376
Query: 75 GQWHKTIPLDNGEEVIMYSVKTI 97
QWH+ + +GE ++M++ K I
Sbjct: 377 NQWHRRLEFPSGETIVMHNPKVI 399
>sp|Q6NZC7|S23IP_MOUSE SEC23-interacting protein OS=Mus musculus GN=Sec23ip PE=1 SV=2
Length = 998
Score = 105 bits (261), Expect = 1e-22, Method: Composition-based stats.
Identities = 40/83 (48%), Positives = 61/83 (73%)
Query: 15 GRYDVHITERERRAVYWTETPSEVRRCSWFYKASLEARYIPYEERVADLLEGEFKAAFTT 74
GRYDV++ +R R++VYW E P+EVRRC+WFYK ++R+IPY E ++ LE E+K A +T
Sbjct: 313 GRYDVYLYDRMRKSVYWEEEPTEVRRCTWFYKGDTDSRFIPYTEEFSEKLEAEYKKAVST 372
Query: 75 GQWHKTIPLDNGEEVIMYSVKTI 97
QWH+ + +GE ++M++ K I
Sbjct: 373 NQWHRRLEFPSGETIVMHNPKVI 395
>sp|Q80Y98|DDHD2_MOUSE Phospholipase DDHD2 OS=Mus musculus GN=Ddhd2 PE=1 SV=3
Length = 699
Score = 92.4 bits (228), Expect = 9e-19, Method: Composition-based stats.
Identities = 39/81 (48%), Positives = 53/81 (65%)
Query: 15 GRYDVHITERERRAVYWTETPSEVRRCSWFYKASLEARYIPYEERVADLLEGEFKAAFTT 74
GRYDVH+ ER R AVYW E PSEVRRC+WFYK + +Y+PY E + +LE + A T
Sbjct: 87 GRYDVHLGERMRYAVYWDELPSEVRRCTWFYKGDKDNKYVPYSESFSQVLEDTYMLAVTL 146
Query: 75 GQWHKTIPLDNGEEVIMYSVK 95
+W K I N E +++++ K
Sbjct: 147 DEWKKKIESPNREIIVLHNPK 167
>sp|O94830|DDHD2_HUMAN Phospholipase DDHD2 OS=Homo sapiens GN=DDHD2 PE=1 SV=2
Length = 711
Score = 88.2 bits (217), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/81 (46%), Positives = 52/81 (64%)
Query: 15 GRYDVHITERERRAVYWTETPSEVRRCSWFYKASLEARYIPYEERVADLLEGEFKAAFTT 74
GRYDVH+ ER R AVYW E SEVRRC+WFYK + +Y+PY E + +LE + A T
Sbjct: 87 GRYDVHLGERMRYAVYWDELASEVRRCTWFYKGDKDNKYVPYSESFSQVLEETYMLAVTL 146
Query: 75 GQWHKTIPLDNGEEVIMYSVK 95
+W K + N E +I+++ K
Sbjct: 147 DEWKKKLESPNREIIILHNPK 167
>sp|O46606|DDHD1_BOVIN Phospholipase DDHD1 OS=Bos taurus GN=DDHD1 PE=1 SV=1
Length = 875
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 10 VVVLFGRYDVHITERERRAVYWTETPS-EVRRCSWFYKASLEARYIPYEERVADLLEGEF 68
V V G Y+V +T+ E VYW ++ V R WF ++ + P EE ++L+E E
Sbjct: 260 VCVRGGLYEVDVTQGECYPVYWNQSDKIPVMRGQWF----IDGTWQPLEEEESNLIEQEH 315
Query: 69 KAAFTTGQWHKTI------PLDNGEEVIMYSVKTIPLD--NGEEVIMYS 109
+ F Q ++ P+D + + + + +D + +EV +YS
Sbjct: 316 LSRFRGQQMQESFDIEVSKPIDGKDAIHSFKLSRNHVDWHSVDEVYLYS 364
>sp|E1UV19|BIOW_BACAS 6-carboxyhexanoate--CoA ligase OS=Bacillus amyloliquefaciens
(strain ATCC 23350 / DSM 7 / BCRC 11601 / NBRC 15535 /
NRRL B-14393) GN=bioW PE=3 SV=1
Length = 256
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 103 EEVIMYSVKVRVSTYVPQWHKTIPLDNGEEVIMYSVKMEAVTG 145
EE I YSV++R S P + GE +I YS EAV G
Sbjct: 2 EEEIYYSVRMRASRDAPHEQGGKHISGGERLITYSGLQEAVNG 44
>sp|Q8NEL9|DDHD1_HUMAN Phospholipase DDHD1 OS=Homo sapiens GN=DDHD1 PE=1 SV=2
Length = 900
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 10 VVVLFGRYDVHITERERRAVYWTETPS-EVRRCSWFYKASLEARYIPYEERVADLLEGEF 68
V V G Y+V +T+ E VYW + V R WF ++ + P EE ++L+E E
Sbjct: 257 VCVRGGLYEVDVTQGECYPVYWNQADKIPVMRGQWF----IDGTWQPLEEEESNLIEQEH 312
Query: 69 KAAFTTGQWHKTIPLD 84
F Q + ++
Sbjct: 313 LNCFRGQQMQENFDIE 328
>sp|A6LSF2|MNMA_CLOB8 tRNA-specific 2-thiouridylase MnmA OS=Clostridium beijerinckii
(strain ATCC 51743 / NCIMB 8052) GN=mnmA PE=3 SV=1
Length = 358
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 88 EVIMYSVKTIPLDNGEEVIMYSVKVRVSTYVPQWHKTIPLDNGEEVIMYSVKMEAVT 144
E+I V IP D E+ I + K+R S P IPL NG +++ K A+T
Sbjct: 280 ELIATDVNFIPFDKLEKEIEVTAKIRYSAR-PAEATLIPLPNGRVKVIFKEKQRAIT 335
>sp|B1ILH4|MNMA1_CLOBK tRNA-specific 2-thiouridylase MnmA 1 OS=Clostridium botulinum
(strain Okra / Type B1) GN=mnmA1 PE=3 SV=1
Length = 353
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 88 EVIMYSVKTIPLDNGEEVIMYSVKVRVSTYVPQWHKTIPLDNGEEVIMYSVKMEAVT 144
E+I V IP D E+ + KVR S P IPL+N + +++ K A+T
Sbjct: 275 ELIARDVNFIPFDKLEKSMELEAKVRYSAK-PSKATIIPLENNKVKVVFQNKQRAIT 330
>sp|A5I5Y9|MNMA2_CLOBH tRNA-specific 2-thiouridylase MnmA 2 OS=Clostridium botulinum
(strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=mnmA2
PE=3 SV=1
Length = 353
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 88 EVIMYSVKTIPLDNGEEVIMYSVKVRVSTYVPQWHKTIPLDNGEEVIMYSVKMEAVT 144
E+I V IP D E+ + KVR S P IPL+N + +++ K A+T
Sbjct: 275 ELIAKDVNFIPFDKLEKSMELEAKVRYSAK-PSKATIIPLENNKVKVVFQNKQRAIT 330
>sp|A7FXG3|MNMA2_CLOB1 tRNA-specific 2-thiouridylase MnmA 2 OS=Clostridium botulinum
(strain ATCC 19397 / Type A) GN=mnmA2 PE=3 SV=1
Length = 353
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 88 EVIMYSVKTIPLDNGEEVIMYSVKVRVSTYVPQWHKTIPLDNGEEVIMYSVKMEAVT 144
E+I V IP D E+ + KVR S P IPL+N + +++ K A+T
Sbjct: 275 ELIAKDVNFIPFDKLEKSMELEAKVRYSAK-PSKATIIPLENNKVKVVFQNKQRAIT 330
>sp|A7GHC7|MNMA2_CLOBL tRNA-specific 2-thiouridylase MnmA 2 OS=Clostridium botulinum
(strain Langeland / NCTC 10281 / Type F) GN=mnmA2 PE=3
SV=1
Length = 353
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 88 EVIMYSVKTIPLDNGEEVIMYSVKVRVSTYVPQWHKTIPLDNGEEVIMYSVKMEAVT 144
E+I V IP D E+ + KVR S P IPL+N + +++ K A+T
Sbjct: 275 ELIAKDVNFIPFDKLEKPMELEAKVRYSAK-PSKATIIPLENNKVKVVFQNKQRAIT 330
>sp|P22648|FAS2_SCHAM Fasciclin-2 OS=Schistocerca americana GN=FAS2 PE=1 SV=2
Length = 898
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 81 IPLDNGEEVIMYSVKTIPLDNGEEVIMYSVKVRVSTYVPQWHK 123
+P DNGE + YSVK+ P++ Y + R+ Y Q HK
Sbjct: 664 VPADNGEPITHYSVKSCPVEK------YDTEWRLLPYPCQEHK 700
>sp|P87109|YDK2_SCHPO Probable phospholipase C20G8.02, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC20G8.02 PE=3 SV=1
Length = 757
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 17 YDVHITERERRAVYWTETPSEVRRCSWFYKASLEARYIPYEERVADLLE 65
Y V++ RE +YW + R +WF+ S + P EE +A +E
Sbjct: 158 YSVNVVSRELSPIYWDGPVYRILRGTWFF--SRGDKLYPCEENLATQVE 204
>sp|B1KZJ2|MNMA2_CLOBM tRNA-specific 2-thiouridylase MnmA 2 OS=Clostridium botulinum
(strain Loch Maree / Type A3) GN=mnmA2 PE=3 SV=1
Length = 353
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 88 EVIMYSVKTIPLDNGEEVIMYSVKVRVSTYVPQWHKTIPLDNGEEVIMYSVKMEAVT 144
E+I V IP D E+ + KVR S P IPL N + +++ K A+T
Sbjct: 275 ELIAKDVNFIPFDKLEKSMELEAKVRYSAK-PSKATIIPLGNNKVKVVFQNKQRAIT 330
>sp|Q8CAF4|NHSL1_MOUSE NHS-like protein 1 OS=Mus musculus GN=Nhsl1 PE=1 SV=3
Length = 1587
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 30 YWTETPSEVRRCSWFYKASLEARYIPYEERVADLLEGEFKAAFTTGQWHKTIPLDNGEEV 89
Y E R+CS +S E R+I R G+F T W K++PL EE
Sbjct: 150 YQDEDTEADRKCS--LSSSEEERFIGIR-RPKTPTSGDFSDLHTQTNWTKSLPLPTPEEK 206
Query: 90 IMYSVKTIPLD 100
+T+ D
Sbjct: 207 TRQQAQTVQAD 217
>sp|A0Q152|MNMA_CLONN tRNA-specific 2-thiouridylase MnmA OS=Clostridium novyi (strain NT)
GN=mnmA PE=3 SV=1
Length = 350
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 87 EEVIMYSVKTIPLDNGEEVIMYSVKVRVSTYVPQWHKTIPLDNGEEVIMYSVKMEAVT 144
E +I V IP D+ E + K+R ST IP D+G+ +M+ K A+T
Sbjct: 270 EGLIAKEVNFIPFDSLENPMEVEAKIRYST-TKSKATIIPYDDGKIKVMFKDKQRAIT 326
>sp|Q894S7|MNMA2_CLOTE tRNA-specific 2-thiouridylase MnmA 2 OS=Clostridium tetani (strain
Massachusetts / E88) GN=mnmA2 PE=3 SV=1
Length = 358
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 88 EVIMYSVKTIPLDNGEEVIMYSVKVRVSTYVPQWHKTIPLDNGEEVIMYSVKMEAVT 144
E+I V IP DN +E + K+R S +P P++N + + ++ K A+T
Sbjct: 283 ELIAKDVNYIPFDNLKEPMEVEAKIRYSQ-IPSKAVITPMENDKVKVNFTEKQRAIT 338
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,754,673
Number of Sequences: 539616
Number of extensions: 2069350
Number of successful extensions: 4056
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4039
Number of HSP's gapped (non-prelim): 27
length of query: 148
length of database: 191,569,459
effective HSP length: 106
effective length of query: 42
effective length of database: 134,370,163
effective search space: 5643546846
effective search space used: 5643546846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)