Query psy12157
Match_columns 148
No_of_seqs 111 out of 144
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 20:10:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12157.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12157hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2308|consensus 99.9 1.4E-23 3.1E-28 196.1 7.7 100 6-107 146-247 (741)
2 PF02825 WWE: WWE domain; Int 96.3 0.0046 9.9E-08 41.2 3.3 31 41-72 8-38 (72)
3 smart00678 WWE Domain in Delte 95.6 0.018 4E-07 38.9 3.6 28 42-70 2-29 (73)
4 PF02825 WWE: WWE domain; Int 55.8 17 0.00037 23.8 3.2 34 6-40 39-72 (72)
5 TIGR02171 Fb_sc_TIGR02171 Fibr 50.4 28 0.00061 35.1 4.9 50 84-137 359-417 (912)
6 PRK08515 flgA flagellar basal 48.4 67 0.0014 26.5 6.2 79 56-134 22-116 (222)
7 TIGR00547 lolA periplasmic cha 45.7 1.3E+02 0.0027 24.5 7.3 70 58-144 22-99 (204)
8 COG3816 Uncharacterized protei 33.1 23 0.00049 29.8 1.2 26 23-48 28-60 (205)
9 cd00072 GYF GYF domain: contai 29.9 62 0.0013 21.5 2.7 28 42-69 3-31 (57)
10 PF13144 SAF_2: SAF-like 26.0 2.5E+02 0.0054 21.8 5.8 47 95-141 52-98 (196)
11 PF08043 Xin: Xin repeat; Int 25.5 55 0.0012 17.5 1.4 11 37-47 2-12 (16)
12 PF00803 3A: 3A/RNA2 movement 24.4 3E+02 0.0065 23.1 6.4 58 37-103 30-88 (234)
13 COG2834 LolA Outer membrane li 23.3 3.9E+02 0.0084 21.3 7.1 30 59-88 27-57 (211)
14 PF15651 Tox-SGS: Salivary gla 22.4 46 0.001 25.3 1.1 30 24-58 43-72 (100)
15 KOG2308|consensus 22.3 34 0.00074 33.8 0.5 51 15-69 81-142 (741)
16 KOG3644|consensus 21.8 2.1E+02 0.0046 26.5 5.4 82 39-130 93-182 (457)
17 COG1637 Predicted nuclease of 20.9 1.9E+02 0.0041 25.2 4.6 53 6-59 51-132 (253)
18 PRK06733 hypothetical protein; 20.8 2.9E+02 0.0062 22.1 5.3 49 90-144 65-113 (151)
19 PF07542 ATP12: ATP12 chaperon 20.7 1.2E+02 0.0025 23.2 3.0 45 4-68 4-48 (122)
No 1
>KOG2308|consensus
Probab=99.89 E-value=1.4e-23 Score=196.08 Aligned_cols=100 Identities=26% Similarity=0.427 Sum_probs=93.6
Q ss_pred eeEEEEeeCceEEEEcCCeEEeeeecCCCCcceEeeeeeeeCCCCCeeeeCChHHHHHHHHHHHhhhccCccceeeeCCC
Q psy12157 6 YFLSVVVLFGRYDVHITERERRAVYWTETPSEVRRCSWFYKASLEARYIPYEERVADLLEGEFKAAFTTGQWHKTIPLDN 85 (148)
Q Consensus 6 ~~~~V~VdGGrYDVdL~~Re~~PVYW~gp~~EVRRgtWFyk~~~ds~~iPl~E~lA~~LEe~Y~~a~~~~~W~k~lelpn 85 (148)
+-..|+|+||||+||+.+|+|.||||+|+..|||||+||+++ |++|+||+|++|++||++|++++.+++|+..+.+.+
T Consensus 146 e~~~v~v~gG~Y~Vd~~~r~~~pvYW~~d~~ev~Rg~WF~~~--~~~~~P~~e~~s~qlE~~yl~~~~~~~~~~~~~~~~ 223 (741)
T KOG2308|consen 146 ESPPVVVEGGLYEVDKENRKCSPVYWSGDEKEVRRGTWFFDG--GSTLQPLEEELSEQLEAEYLNSFRTQELPENFTLFT 223 (741)
T ss_pred ccCceeecCCeeeeeeecccccCCCCCCCcccceeeeeeecC--CCceeeccchhHHHHHHHHHHHhhhccccccccccc
Confidence 667899999999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred CCEEEEECCcEEEeec--CCceEE
Q psy12157 86 GEEVIMYSVKTIPLDN--GEEVIM 107 (148)
Q Consensus 86 gE~vV~Hnp~~mVhf~--~~~v~~ 107 (148)
++++.+|++++++||+ +++..|
T Consensus 224 ~s~~s~~g~~v~~~f~~~~~~~~w 247 (741)
T KOG2308|consen 224 ASYISIHGKPVVVSFKYTGNDDTW 247 (741)
T ss_pred ceeeeecCCceEEEeeecCCCccc
Confidence 9999999999999965 444433
No 2
>PF02825 WWE: WWE domain; InterPro: IPR004170 The WWE domain is named after three of its conserved residues and is predicted to mediate specific protein-protein interactions in ubiquitin and ADP ribose conjugation systems. This domain is found as a tandem repeat at the N-terminal of Deltex, a cytosolic effector of Notch signalling thought to bind the N-terminal of the Notch receptor []. It is also found as an interaction module in protein ubiquination and ADP ribosylation proteins [].; PDB: 2A90_A 1UJR_A 2DK6_A 3V3L_B.
Probab=96.32 E-value=0.0046 Score=41.19 Aligned_cols=31 Identities=16% Similarity=0.611 Sum_probs=24.7
Q ss_pred eeeeeeCCCCCeeeeCChHHHHHHHHHHHhhh
Q psy12157 41 CSWFYKASLEARYIPYEERVADLLEGEFKAAF 72 (148)
Q Consensus 41 gtWFyk~~~ds~~iPl~E~lA~~LEe~Y~~a~ 72 (148)
..|++.++ ++.|.||+++.+..||++|++-.
T Consensus 8 ~~W~w~~~-~~~W~~Y~~~~~~~IE~a~~~~~ 38 (72)
T PF02825_consen 8 YVWQWEDD-DGGWHPYDPEVSEIIEEAYQNGK 38 (72)
T ss_dssp EEEEEESE-TSSEEE--HHHHHHHHHHHHTTT
T ss_pred EEEEEECC-CCcEEeCCcHHHHHHHHHHHcCC
Confidence 57888844 78899999999999999998664
No 3
>smart00678 WWE Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis.
Probab=95.57 E-value=0.018 Score=38.86 Aligned_cols=28 Identities=29% Similarity=0.752 Sum_probs=25.0
Q ss_pred eeeeeCCCCCeeeeCChHHHHHHHHHHHh
Q psy12157 42 SWFYKASLEARYIPYEERVADLLEGEFKA 70 (148)
Q Consensus 42 tWFyk~~~ds~~iPl~E~lA~~LEe~Y~~ 70 (148)
.|.+.++ .+.|.||+.+.+..||++|++
T Consensus 2 ~W~w~~~-~g~W~~Y~~~~~~~IE~ay~~ 29 (73)
T smart00678 2 VWEYEGR-NGKWWPYDPRVSEDIEEAYAA 29 (73)
T ss_pred EEEEECC-CCCeeeCChHHHHHHHHHHHc
Confidence 5888876 578999999999999999975
No 4
>PF02825 WWE: WWE domain; InterPro: IPR004170 The WWE domain is named after three of its conserved residues and is predicted to mediate specific protein-protein interactions in ubiquitin and ADP ribose conjugation systems. This domain is found as a tandem repeat at the N-terminal of Deltex, a cytosolic effector of Notch signalling thought to bind the N-terminal of the Notch receptor []. It is also found as an interaction module in protein ubiquination and ADP ribosylation proteins [].; PDB: 2A90_A 1UJR_A 2DK6_A 3V3L_B.
Probab=55.84 E-value=17 Score=23.82 Aligned_cols=34 Identities=12% Similarity=0.013 Sum_probs=24.9
Q ss_pred eeEEEEeeCceEEEEcCCeEEeeeecCCCCcceEe
Q psy12157 6 YFLSVVVLFGRYDVHITERERRAVYWTETPSEVRR 40 (148)
Q Consensus 6 ~~~~V~VdGGrYDVdL~~Re~~PVYW~gp~~EVRR 40 (148)
..+.+.+.|..|.||+.++.....-.. ...+|||
T Consensus 39 ~~~~~~~~~~~Y~IDF~~M~Q~n~~t~-~~R~IrR 72 (72)
T PF02825_consen 39 KSCQLSIGGRPYTIDFKSMTQINKDTG-TTRPIRR 72 (72)
T ss_dssp SEEEEEETTEEEEEETTTTEEEESSSS--EEEEEE
T ss_pred cEEEEEeCCcEEEEEChhcEEEeCCCC-CEeecCC
Confidence 356677888899999999998776554 4455655
No 5
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=50.35 E-value=28 Score=35.13 Aligned_cols=50 Identities=24% Similarity=0.443 Sum_probs=30.5
Q ss_pred CCCCEEEE--------ECCcEEEe-ecCCceEEEEEEEEEEeecccceeeeeCCCCceEEEEE
Q psy12157 84 DNGEEVIM--------YSVKTIPL-DNGEEVIMYSVKVRVSTYVPQWHKTIPLDNGEEVIMYS 137 (148)
Q Consensus 84 pngE~vV~--------Hnp~~mVh-f~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (148)
|+|+.+.+ -+|.++|| ...+.---..+.|. +.-+|.|+- |.||+.||.|-
T Consensus 359 PDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve-~aaiprwrv---~e~gdt~ivyv 417 (912)
T TIGR02171 359 PDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVE-NAAIPRWRV---LENGDTVIVYV 417 (912)
T ss_pred CCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecc-cccccceEe---cCCCCeEEEEE
Confidence 56666665 24555555 22222222333333 667899984 89999999993
No 6
>PRK08515 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=48.42 E-value=67 Score=26.46 Aligned_cols=79 Identities=6% Similarity=0.020 Sum_probs=52.0
Q ss_pred CChHHHHHHHHHHHh-h--hccCccceeeeCCCC----CEEEEE---------CCcEEEeecCCceEEEEEEEEEEeecc
Q psy12157 56 YEERVADLLEGEFKA-A--FTTGQWHKTIPLDNG----EEVIMY---------SVKTIPLDNGEEVIMYSVKVRVSTYVP 119 (148)
Q Consensus 56 l~E~lA~~LEe~Y~~-a--~~~~~W~k~lelpng----E~vV~H---------np~~mVhf~~~~v~~y~~~~~~~~~~~ 119 (148)
+++++.+++..+|++ . ++...-..++.+|.. +..-+. +-++.+.-+++..-.=.++++|..++|
T Consensus 22 ~~~~i~~~~~~~~~~~~i~I~~~~ld~~~~lp~cf~~~~~~~~~l~~~~~~~G~~~v~v~c~~~~~w~i~v~~~v~~~~~ 101 (222)
T PRK08515 22 LKTEIKEAYLKEYKNNKIEIKSINLEPTSSLPEDFSQYEFLRIELNAFNSLKGFGRASFKTPNNPNKKLFFRYSIIANLE 101 (222)
T ss_pred HHHHHHHHHHHHhhhcceEEEEEEeeccccCccccccceEEeeeecCccccCCcEEEEEEeCCCCCcEEEEEEEEEEEEE
Confidence 455577777778876 1 223333333445665 443333 445666676666666678888999999
Q ss_pred cceeeeeCCCCceEE
Q psy12157 120 QWHKTIPLDNGEEVI 134 (148)
Q Consensus 120 ~~~~~~~~~~~~~~~ 134 (148)
-+.-+-||.-|+.+-
T Consensus 102 v~Va~r~i~rG~~I~ 116 (222)
T PRK08515 102 VLKSIRAIKKDDNLT 116 (222)
T ss_pred EEEEccccCCCCCCC
Confidence 999999999998654
No 7
>TIGR00547 lolA periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself.
Probab=45.65 E-value=1.3e+02 Score=24.50 Aligned_cols=70 Identities=13% Similarity=0.220 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHhhhc-cCccceeeeCCCCCE-------EEEECCcEEEeecCCceEEEEEEEEEEeecccceeeeeCCC
Q psy12157 58 ERVADLLEGEFKAAFT-TGQWHKTIPLDNGEE-------VIMYSVKTIPLDNGEEVIMYSVKVRVSTYVPQWHKTIPLDN 129 (148)
Q Consensus 58 E~lA~~LEe~Y~~a~~-~~~W~k~lelpngE~-------vV~Hnp~~mVhf~~~~v~~y~~~~~~~~~~~~~~~~~~~~~ 129 (148)
.+.++.|++-|...-+ ...+..++..++|+. +.+..|. ++|-.+--|. +.+=+.|
T Consensus 22 a~~~~~L~~~l~~~~s~~a~F~Q~~~~~~~~~~~~~~G~~~~krP~---------------~frW~~~~P~--~q~iVsd 84 (204)
T TIGR00547 22 ADAASDLKMRLAKVDSFHAEFTQKVTDGSGAAVQEGQGDLQIKRPN---------------LFNMEMKQPD--ESIIISD 84 (204)
T ss_pred hhHHHHHHHHHhhhCeeEEEEEEEEEcCCCcEEEEeEEEEEEeCCC---------------eEEEEEcCCC--ceEEEEC
Confidence 6778889988876654 456766666665543 4444454 3343333343 3444567
Q ss_pred CceEEEEEEEeeeee
Q psy12157 130 GEEVIMYSVKMEAVT 144 (148)
Q Consensus 130 ~~~~~~~~~~~~~~~ 144 (148)
|+.|.+|..+.|-||
T Consensus 85 G~~vw~Ydp~leQvt 99 (204)
T TIGR00547 85 GKTLWFYDPFVEQAT 99 (204)
T ss_pred CCEEEEECCCCceee
Confidence 777777777776664
No 8
>COG3816 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.13 E-value=23 Score=29.81 Aligned_cols=26 Identities=31% Similarity=0.709 Sum_probs=17.2
Q ss_pred CeEEeee-ecCCC-----CcceEe-eeeeeeCC
Q psy12157 23 ERERRAV-YWTET-----PSEVRR-CSWFYKAS 48 (148)
Q Consensus 23 ~Re~~PV-YW~gp-----~~EVRR-gtWFyk~~ 48 (148)
+|-+-|| -|+.| ..|+|+ |||||-|.
T Consensus 28 ~rGlpPV~rWNPpfCGdiDmeIr~DGtWFylGT 60 (205)
T COG3816 28 KRGLPPVERWNPPFCGDIDMEIRADGTWFYLGT 60 (205)
T ss_pred ccCCCchhhcCCCCccceeeEEecCceEEEecC
Confidence 3444444 36643 468888 99999985
No 9
>cd00072 GYF GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins. Involved in signaling lymphocyte activity. Also present in other unrelated proteins (mainly unknown) derived from diverse eukaryotic species.
Probab=29.87 E-value=62 Score=21.48 Aligned_cols=28 Identities=18% Similarity=0.474 Sum_probs=23.0
Q ss_pred eeeeeCCCCCeeeeC-ChHHHHHHHHHHH
Q psy12157 42 SWFYKASLEARYIPY-EERVADLLEGEFK 69 (148)
Q Consensus 42 tWFyk~~~ds~~iPl-~E~lA~~LEe~Y~ 69 (148)
.|+|++..+...=|| .+++.+=.+++|-
T Consensus 3 ~W~Y~d~~g~vqGPF~~~~M~~W~~~gyF 31 (57)
T cd00072 3 QWFYKDPQGEIQGPFSASQMLQWYQAGYF 31 (57)
T ss_pred EEEEECCCCCCcCCcCHHHHHHHHHCCCC
Confidence 599999878888899 6777888888884
No 10
>PF13144 SAF_2: SAF-like
Probab=25.96 E-value=2.5e+02 Score=21.80 Aligned_cols=47 Identities=28% Similarity=0.326 Sum_probs=37.4
Q ss_pred cEEEeecCCceEEEEEEEEEEeecccceeeeeCCCCceEEEEEEEee
Q psy12157 95 KTIPLDNGEEVIMYSVKVRVSTYVPQWHKTIPLDNGEEVIMYSVKME 141 (148)
Q Consensus 95 ~~mVhf~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (148)
.+-|.+++...-.+.+.++++.+.+-|.-+-||..|+.+-.-.++++
T Consensus 52 ~~~v~~~~~~~~~~~v~~~v~~~~~v~va~~~i~~G~~i~~~dv~~~ 98 (196)
T PF13144_consen 52 RVSVRCDGPPNWKIYVRVRVSAYVEVVVAKRPIKRGEVITADDVELE 98 (196)
T ss_pred EEEEEEcCCCCeEEEEEEEEEEEEEEEEEeeecCCCCccCHHHeEEE
Confidence 45677888888889999999999999999999999987644334433
No 11
>PF08043 Xin: Xin repeat; InterPro: IPR012510 The repeat has the consensus sequence GDV(K/Q/R)(T/S/G)X(R/K/T) WLFETXPLD. This repeat motif is typically found in the N terminus of the proteins, with a copy number between 2 and 28 repeats. Direct evidence for binding to and stabilising F-actin has been found in the human protein (Q702N9 from SWISSPROT) []. The homologues in mouse and chicken localise in the adherens junction complex of the intercalated disc in cardiac muscle and in the myotendon junction of skeletal muscle. mXin may co-localise with Vinculin which is known to attach the actin to the cytoplasmic membrane []. It has been shown that the amino-terminus of human xin (CMYA1) binds the EVH1 domain of Mena/VASP/EVL, and the carboxy-terminus binds the, for the filamin family unique, domain 20 of filamin C []. This confirms the proposed role of xin repeat containing proteins as F-actin-binding adapter proteins.; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0030054 cell junction
Probab=25.52 E-value=55 Score=17.54 Aligned_cols=11 Identities=18% Similarity=0.939 Sum_probs=9.5
Q ss_pred ceEeeeeeeeC
Q psy12157 37 EVRRCSWFYKA 47 (148)
Q Consensus 37 EVRRgtWFyk~ 47 (148)
.|+.++|.+..
T Consensus 2 DV~~~~wlFEt 12 (16)
T PF08043_consen 2 DVKTTRWLFET 12 (16)
T ss_pred CcceeEEEeec
Confidence 58899999986
No 12
>PF00803 3A: 3A/RNA2 movement protein family; InterPro: IPR000603 This entry includes movement proteins from various viruses. The 3A protein is found in Bromoviruses and Cucumoviruses, whose genomes contain 3 RNA segments. The third segment (RNA 3) contains two proteins, the coat protein and the 3A protein. The function of the 3A protein is uncertain, but has been shown to be involved in cell-to-cell movement of the virus []. The entry also includes movement proteins from Dianthoviruses.
Probab=24.42 E-value=3e+02 Score=23.07 Aligned_cols=58 Identities=14% Similarity=0.234 Sum_probs=37.6
Q ss_pred ceEeeeeeeeCCCCCeeeeC-ChHHHHHHHHHHHhhhccCccceeeeCCCCCEEEEECCcEEEeecCC
Q psy12157 37 EVRRCSWFYKASLEARYIPY-EERVADLLEGEFKAAFTTGQWHKTIPLDNGEEVIMYSVKTIPLDNGE 103 (148)
Q Consensus 37 EVRRgtWFyk~~~ds~~iPl-~E~lA~~LEe~Y~~a~~~~~W~k~lelpngE~vV~Hnp~~mVhf~~~ 103 (148)
.--|++|+..+. +....|| +++...+|=..++ ..|++...-.+| .||=|.+++-+--+
T Consensus 30 ~lgr~~~~~~~~-~~~~~~Lvp~~~~~~~~~~~~-----s~~k~~~~~s~G---~m~i~~Vl~~vvPt 88 (234)
T PF00803_consen 30 DLGRYTWLRADN-RVSVTPLVPPSTQSRIARLFK-----SSYKNGKLPSNG---YMSISRVLVWVVPT 88 (234)
T ss_pred ccCCcceEEecC-CeeEEeccCcchHHHHHHHHh-----ccccCCcccCCc---cEEEeeEEEEEcCC
Confidence 345899998876 7788898 6666666666653 345554444455 66777777665433
No 13
>COG2834 LolA Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]
Probab=23.30 E-value=3.9e+02 Score=21.34 Aligned_cols=30 Identities=13% Similarity=0.297 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhhc-cCccceeeeCCCCCE
Q psy12157 59 RVADLLEGEFKAAFT-TGQWHKTIPLDNGEE 88 (148)
Q Consensus 59 ~lA~~LEe~Y~~a~~-~~~W~k~lelpngE~ 88 (148)
+.+++|.+.|.+..+ .......+...+|..
T Consensus 27 ~~~~~l~~~~~~i~~~s~~f~q~~~~g~~~~ 57 (211)
T COG2834 27 EAASQLKERLAKVKSYSASFTQTVESGSGKQ 57 (211)
T ss_pred HHHHHHHHHHHhhccceeEEEEEEEcCCCce
Confidence 578888888877654 455555555554433
No 14
>PF15651 Tox-SGS: Salivary glad secreted protein domain toxin
Probab=22.41 E-value=46 Score=25.33 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=24.8
Q ss_pred eEEeeeecCCCCcceEeeeeeeeCCCCCeeeeCCh
Q psy12157 24 RERRAVYWTETPSEVRRCSWFYKASLEARYIPYEE 58 (148)
Q Consensus 24 Re~~PVYW~gp~~EVRRgtWFyk~~~ds~~iPl~E 58 (148)
+.|.|+.|+|.++-+=+|.++.-= |.|++.
T Consensus 43 ~~C~Pi~w~G~pSv~C~Gq~ssfi-----yTp~~~ 72 (100)
T PF15651_consen 43 SSCMPIEWHGQPSVSCDGQQSSFI-----YTPYET 72 (100)
T ss_pred cCCcceeECCccceeeccceeeeE-----EccccC
Confidence 358999999999999999988653 578754
No 15
>KOG2308|consensus
Probab=22.26 E-value=34 Score=33.79 Aligned_cols=51 Identities=22% Similarity=0.065 Sum_probs=40.2
Q ss_pred ceEEEEcCCeEEeeeecCCCCcceE-----------eeeeeeeCCCCCeeeeCChHHHHHHHHHHH
Q psy12157 15 GRYDVHITERERRAVYWTETPSEVR-----------RCSWFYKASLEARYIPYEERVADLLEGEFK 69 (148)
Q Consensus 15 GrYDVdL~~Re~~PVYW~gp~~EVR-----------RgtWFyk~~~ds~~iPl~E~lA~~LEe~Y~ 69 (148)
.+.+++.......|-+|..+.+.+| |.+|++++ .|.|.+-..+..||+.+.
T Consensus 81 ~l~~~~~~~~~~~~~~~~~p~~~~r~~s~~~~~~~~~~~~~~~~----~~~p~~~~ds~~le~~~~ 142 (741)
T KOG2308|consen 81 VLSEVDTLHASFLPRDSEAPEYWVRQYSGVNPHEFYRLTSEYKS----TWTPSEHSDSDDLEEGEN 142 (741)
T ss_pred hcccccccccccccccccCcccccccccCCCCChhhhccccccc----cccccccccccccccccc
Confidence 5667777777777777777777766 66777766 489999999999999986
No 16
>KOG3644|consensus
Probab=21.77 E-value=2.1e+02 Score=26.47 Aligned_cols=82 Identities=11% Similarity=0.122 Sum_probs=55.0
Q ss_pred EeeeeeeeC-----CCCCeeeeCChHHHHHHHHHHHhhhccCccceeeeCCCCCEEEEE---CCcEEEeecCCceEEEEE
Q psy12157 39 RRCSWFYKA-----SLEARYIPYEERVADLLEGEFKAAFTTGQWHKTIPLDNGEEVIMY---SVKTIPLDNGEEVIMYSV 110 (148)
Q Consensus 39 RRgtWFyk~-----~~ds~~iPl~E~lA~~LEe~Y~~a~~~~~W~k~lelpngE~vV~H---np~~mVhf~~~~v~~y~~ 110 (148)
.|=.|+... -+.....|+..+++.. ...|.=-+-+.|++..=+| .|+++++---+--+||+.
T Consensus 93 ~~~~W~DpRL~~~~~~~~~~~~~~~~l~~~----------~~iW~Pd~~F~NsK~a~~H~~~~~N~ll~I~pnGtV~~~~ 162 (457)
T KOG3644|consen 93 FRERWQDPRLAYNALKFDHILPCKLNLSLK----------QKIWTPDTFFANSKSAEFHKSTKPNVLLMIFPNGTVWYSY 162 (457)
T ss_pred eeeeEeCccccccccCcccccccccccccC----------CceecCceeeecccceeeecCCCCceEEEEecCCeEEEEE
Confidence 455666552 1123345666666555 4478777888899988888 577777755555678998
Q ss_pred EEEEEeecccceeeeeCCCC
Q psy12157 111 KVRVSTYVPQWHKTIPLDNG 130 (148)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~ 130 (148)
.+++...-+.=-+..|+|.-
T Consensus 163 Ri~l~~~C~m~L~~fP~D~Q 182 (457)
T KOG3644|consen 163 RISLTLPCNMDLSKFPMDSQ 182 (457)
T ss_pred EEEEeeceeeehhhCCCccc
Confidence 88888777766677777754
No 17
>COG1637 Predicted nuclease of the RecB family [DNA replication, recombination, and repair]
Probab=20.89 E-value=1.9e+02 Score=25.24 Aligned_cols=53 Identities=23% Similarity=0.211 Sum_probs=38.8
Q ss_pred eeEEEEeeCceEEEEcCCeEEeeeecCCCCcc----eEe-------------------------eeeeeeCCCCCeeeeC
Q psy12157 6 YFLSVVVLFGRYDVHITERERRAVYWTETPSE----VRR-------------------------CSWFYKASLEARYIPY 56 (148)
Q Consensus 6 ~~~~V~VdGGrYDVdL~~Re~~PVYW~gp~~E----VRR-------------------------gtWFyk~~~ds~~iPl 56 (148)
+-++|.=-+|-|.||.. |.+.|+=|..|+.. ++. -+||..++.++-.++.
T Consensus 51 dRlli~KpDGt~~vH~~-~~~eP~nW~pp~s~~~~~~~~g~l~l~~ir~~p~E~L~I~~~ev~~~~~~d~~~~~~~~~~g 129 (253)
T COG1637 51 DRLLIIKPDGTVLVHQD-RKREPLNWQPPGSSIAAAVRDGLLTLLSIRRKPGEVLRITIHEVLHITSFDAEDTPELTLDG 129 (253)
T ss_pred ceEEEEccCceEEeccc-ccCCCcccCCCCceEEEeecCCceEEEEEcCCCccEEEEEEeeeeeeeeeecCCCcceeecc
Confidence 44566667899999999 99999999977542 233 3788877766777777
Q ss_pred ChH
Q psy12157 57 EER 59 (148)
Q Consensus 57 ~E~ 59 (148)
.|.
T Consensus 130 ~E~ 132 (253)
T COG1637 130 SEA 132 (253)
T ss_pred hHH
Confidence 554
No 18
>PRK06733 hypothetical protein; Provisional
Probab=20.78 E-value=2.9e+02 Score=22.15 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=30.9
Q ss_pred EEECCcEEEeecCCceEEEEEEEEEEeecccceeeeeCCCCceEEEEEEEeeeee
Q psy12157 90 IMYSVKTIPLDNGEEVIMYSVKVRVSTYVPQWHKTIPLDNGEEVIMYSVKMEAVT 144 (148)
Q Consensus 90 V~Hnp~~mVhf~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (148)
+.+||++-+.+=+.+-- |++|-...-..-+-+ .+||. +-++.++.|.|-
T Consensus 65 Lk~Np~v~I~~~~~~~~-yqIkG~a~i~~e~ie-~vplk----~s~vei~I~eVr 113 (151)
T PRK06733 65 IRHNPGVVLTIIANESV-YSISGAAEILTDRME-GVPLK----LALIEVNVEEVR 113 (151)
T ss_pred HhhCCcEEEEEEeCCcE-EEEEEEEEEEeeecc-cccce----EEEEEEEEEEEE
Confidence 45899999987666554 777765543333322 44655 677777777663
No 19
>PF07542 ATP12: ATP12 chaperone protein; InterPro: IPR011419 This entry represents a group of ATPase F1F0-assembly proteins, including ATP12 and ATPAF2 (ATP synthase mitochondrial F1 complex assembly factor 2). These proteins are essential for the assembly of the mitochondrial F1-F0 complex. Mitochondrial F1-ATPase is an oligomeric enzyme composed of five distinct subunit polypeptides. The alpha and beta subunits make up the bulk of protein mass of F1. In Saccharomyces cerevisiae both subunits are synthesised as precursors with N-terminal targeting signals that are removed upon translocation of the proteins to the matrix compartment []. These proteins include examples from eukaryotes and bacteria and may have chaperone activity, being involved in F1 ATPase complex assembly. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0043461 proton-transporting ATP synthase complex assembly; PDB: 2R6I_B 2ZD2_B 2P4X_B 2R31_A.
Probab=20.65 E-value=1.2e+02 Score=23.16 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=26.0
Q ss_pred cceeEEEEeeCceEEEEcCCeEEeeeecCCCCcceEeeeeeeeCCCCCeeeeCChHHHHHHHHHH
Q psy12157 4 YSYFLSVVVLFGRYDVHITERERRAVYWTETPSEVRRCSWFYKASLEARYIPYEERVADLLEGEF 68 (148)
Q Consensus 4 ~~~~~~V~VdGGrYDVdL~~Re~~PVYW~gp~~EVRRgtWFyk~~~ds~~iPl~E~lA~~LEe~Y 68 (148)
|.+.-+...++| |.|.|+.|.++- .+ +..+.==++.+|..|=.|.
T Consensus 4 yk~v~v~~~~~g-~~V~LDgR~lkT-----------------P~--~~~l~vps~~LA~avA~EW 48 (122)
T PF07542_consen 4 YKEVSVEENDGG-FQVLLDGRPLKT-----------------PA--GNPLVVPSEALAEAVAAEW 48 (122)
T ss_dssp -S-EEEEEETTS-EEEEETTEE-BE-----------------TT--SEB--BSSHHHHHHHHHHH
T ss_pred cceeeEEecCCC-EEEEeCCCCCCC-----------------CC--CCeeEcCcHHHHHHHHHHH
Confidence 444555566667 999999998752 11 2111112666888887776
Done!