Query psy12157
Match_columns 148
No_of_seqs 111 out of 144
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 20:11:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12157.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12157hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a90_A Deltex protein; WWE dom 94.7 0.063 2.2E-06 44.4 6.4 62 15-83 68-149 (240)
2 3v3l_A E3 ubiquitin-protein li 94.2 0.047 1.6E-06 38.1 3.8 28 42-71 6-33 (85)
3 1ujr_A Hypothetical protein AK 93.6 0.067 2.3E-06 39.3 3.9 29 41-71 30-58 (110)
4 2dk6_A PARP11 protein; structu 90.6 0.16 5.3E-06 36.7 2.7 29 41-70 20-55 (102)
5 2a90_A Deltex protein; WWE dom 83.8 0.89 3E-05 37.6 3.7 32 39-72 24-55 (240)
6 1x4r_A PARP14 protein; WWE dom 72.4 3.4 0.00012 30.0 3.5 28 42-71 28-55 (99)
7 2ra9_A Uncharacterized protein 38.5 13 0.00046 28.6 1.7 37 26-72 16-54 (150)
8 1oef_A Apolipoprotein E; glyco 33.8 15 0.00052 20.1 1.0 20 52-71 2-21 (26)
9 2jn4_A Hypothetical protein FI 32.9 19 0.00063 25.9 1.6 51 83-133 11-67 (87)
10 1x4r_A PARP14 protein; WWE dom 32.2 45 0.0016 24.1 3.6 33 6-40 57-89 (99)
No 1
>2a90_A Deltex protein; WWE domain, metal binding protein; 2.15A {Drosophila melanogaster} SCOP: d.289.1.1 d.289.1.1
Probab=94.70 E-value=0.063 Score=44.44 Aligned_cols=62 Identities=19% Similarity=0.415 Sum_probs=45.9
Q ss_pred ceEEEEcCCeEEeeeecCCC-----CcceEee------------eeeeeC---CCCCeeeeCChHHHHHHHHHHHhhhcc
Q psy12157 15 GRYDVHITERERRAVYWTET-----PSEVRRC------------SWFYKA---SLEARYIPYEERVADLLEGEFKAAFTT 74 (148)
Q Consensus 15 GrYDVdL~~Re~~PVYW~gp-----~~EVRRg------------tWFyk~---~~ds~~iPl~E~lA~~LEe~Y~~a~~~ 74 (148)
+.|-||+..+...--= .|. ...|||. .|...+ +..++|.||+++++..||.+|.+-
T Consensus 68 ~~y~IDf~sMtQ~~~d-tg~~~~~~~r~VRR~~~~PsS~~g~g~vWeW~d~~~D~~G~W~~Y~~~vs~~IE~Ay~~g--- 143 (240)
T 2a90_A 68 EQYYVNVRTMTQESEA-ETAGSGLLTIGVRRMFYAPSSPAGKGTKWEWSGGSADSNNDWRPYNMHVQSIIEDAWARG--- 143 (240)
T ss_dssp TTCEEETTTTEEEC----------CCCBEEEEEECTTSHHHHTEEEEEECSSSSCCSSEEECCHHHHHHHHHHHHTT---
T ss_pred CceEEeccccEEEeec-cCccccccceeeeeccccCCCcCCCccEEEEeCCCCCCCCceEECCHHHHHHHHHHHhcC---
Confidence 5799999998875421 555 7899994 688887 434789999999999999999753
Q ss_pred CccceeeeC
Q psy12157 75 GQWHKTIPL 83 (148)
Q Consensus 75 ~~W~k~lel 83 (148)
+..++|
T Consensus 144 ---~~~v~L 149 (240)
T 2a90_A 144 ---EQTLDL 149 (240)
T ss_dssp ---CSEEEH
T ss_pred ---CCccee
Confidence 244776
No 2
>3v3l_A E3 ubiquitin-protein ligase RNF146; HET: V3L; 1.65A {Homo sapiens}
Probab=94.16 E-value=0.047 Score=38.06 Aligned_cols=28 Identities=29% Similarity=0.755 Sum_probs=24.4
Q ss_pred eeeeeCCCCCeeeeCChHHHHHHHHHHHhh
Q psy12157 42 SWFYKASLEARYIPYEERVADLLEGEFKAA 71 (148)
Q Consensus 42 tWFyk~~~ds~~iPl~E~lA~~LEe~Y~~a 71 (148)
.|++.++ + .|.+|+++++..||++|++-
T Consensus 6 ~W~w~~~-~-GW~~Yd~~~s~~IE~af~~~ 33 (85)
T 3v3l_A 6 AWYYEGR-N-GWWQYDERTSRELEDAFSKG 33 (85)
T ss_dssp EEEEECS-S-SEEECCHHHHHHHHHHHHTT
T ss_pred EEEEeCC-C-CceeCCHHHHHHHHHHHHhC
Confidence 5999986 3 49999999999999999655
No 3
>1ujr_A Hypothetical protein AK012080; WWE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.289.1.1
Probab=93.60 E-value=0.067 Score=39.33 Aligned_cols=29 Identities=28% Similarity=0.678 Sum_probs=25.0
Q ss_pred eeeeeeCCCCCeeeeCChHHHHHHHHHHHhh
Q psy12157 41 CSWFYKASLEARYIPYEERVADLLEGEFKAA 71 (148)
Q Consensus 41 gtWFyk~~~ds~~iPl~E~lA~~LEe~Y~~a 71 (148)
-.||+.++. .|.+|++..+..||++|++-
T Consensus 30 ~~W~w~gd~--GW~~Yd~~~s~~IE~Ay~~g 58 (110)
T 1ujr_A 30 YAWYYEGRN--GWWQYDERTSRELEDAFSKG 58 (110)
T ss_dssp EEEEEECSS--SEEECCSHHHHHHHHHHHHT
T ss_pred eEEEEeCCC--CCccCCHHHHHHHHHHHHcC
Confidence 369999863 49999999999999999765
No 4
>2dk6_A PARP11 protein; structural genomics, WWE domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.64 E-value=0.16 Score=36.69 Aligned_cols=29 Identities=24% Similarity=0.583 Sum_probs=24.9
Q ss_pred eeeeeeCCCCCeeeeCChHH-------HHHHHHHHHh
Q psy12157 41 CSWFYKASLEARYIPYEERV-------ADLLEGEFKA 70 (148)
Q Consensus 41 gtWFyk~~~ds~~iPl~E~l-------A~~LEe~Y~~ 70 (148)
-.||++++ .++|.||.++. +..||++|+.
T Consensus 20 w~W~W~de-~G~W~~Y~~~~~~~~sv~S~~IE~ay~~ 55 (102)
T 2dk6_A 20 WGWFYLAE-CGKWHMFQPDTNSQCSVSSEDIEKSFKT 55 (102)
T ss_dssp EEEEECCS-SSCCEECCCBSSTTCBCCHHHHHHHHHH
T ss_pred EEEEEECC-CCceeECCccccccccccHHHHHHHHhh
Confidence 46999886 67899999976 8999999976
No 5
>2a90_A Deltex protein; WWE domain, metal binding protein; 2.15A {Drosophila melanogaster} SCOP: d.289.1.1 d.289.1.1
Probab=83.78 E-value=0.89 Score=37.58 Aligned_cols=32 Identities=19% Similarity=0.515 Sum_probs=26.8
Q ss_pred EeeeeeeeCCCCCeeeeCChHHHHHHHHHHHhhh
Q psy12157 39 RRCSWFYKASLEARYIPYEERVADLLEGEFKAAF 72 (148)
Q Consensus 39 RRgtWFyk~~~ds~~iPl~E~lA~~LEe~Y~~a~ 72 (148)
.=+.|.+.++ ++|.||+..+++.||++|.+-.
T Consensus 24 ~v~vWEwqd~--g~W~pYs~~v~~~IE~a~~~~~ 55 (240)
T 2a90_A 24 AVSVWEFESR--GKWLPYSPAVSQHLERAHAKKL 55 (240)
T ss_dssp EEEEEEEEET--TEEEECCHHHHHHHHHHHHTTC
T ss_pred ceEEEEEecC--CeEeeCCHHHHHHHHHHhcCCC
Confidence 3367888875 6999999999999999997543
No 6
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=72.37 E-value=3.4 Score=30.04 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=24.2
Q ss_pred eeeeeCCCCCeeeeCChHHHHHHHHHHHhh
Q psy12157 42 SWFYKASLEARYIPYEERVADLLEGEFKAA 71 (148)
Q Consensus 42 tWFyk~~~ds~~iPl~E~lA~~LEe~Y~~a 71 (148)
.|-|.+ +++|.||+.-.-.+||++++.-
T Consensus 28 eWqY~d--~~~~~~FDk~TNl~LEeA~~~k 55 (99)
T 1x4r_A 28 EWQYID--KNITQCFDKMTNMKLEVAWKAK 55 (99)
T ss_dssp EEEEEC--SSCEEECCTTHHHHHHHHHHTT
T ss_pred EEEEeC--CCeEeechHHHHHHHHHHHHcc
Confidence 599976 6779999999999999999653
No 7
>2ra9_A Uncharacterized protein DUF1285; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.40A {Shewanella baltica}
Probab=38.54 E-value=13 Score=28.57 Aligned_cols=37 Identities=14% Similarity=0.324 Sum_probs=22.0
Q ss_pred EeeeecCCCC-cceEe-eeeeeeCCCCCeeeeCChHHHHHHHHHHHhhh
Q psy12157 26 RRAVYWTETP-SEVRR-CSWFYKASLEARYIPYEERVADLLEGEFKAAF 72 (148)
Q Consensus 26 ~~PVYW~gp~-~EVRR-gtWFyk~~~ds~~iPl~E~lA~~LEe~Y~~a~ 72 (148)
.-|-+...-. .+|.| |+|||.|. |... .|-+.+....
T Consensus 16 ~~p~~cgd~dli~I~~dG~W~y~G~------pI~r----~lVrLFssiL 54 (150)
T 2ra9_A 16 TTTPLCSEVPLFDINALGDWTYLGT------SLPA----KFAKLFASIL 54 (150)
T ss_dssp ------CCCCSEEECTTSCEEETTE------ECCH----HHHHHHHTTE
T ss_pred CCCCCccCcCceEECCCCcEEECCc------cccH----HHHHHHHHhe
Confidence 4455666545 57777 99999984 8883 4666666553
No 8
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=33.80 E-value=15 Score=20.12 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=17.1
Q ss_pred eeeeCChHHHHHHHHHHHhh
Q psy12157 52 RYIPYEERVADLLEGEFKAA 71 (148)
Q Consensus 52 ~~iPl~E~lA~~LEe~Y~~a 71 (148)
.+-||.|++-++|++-|.+.
T Consensus 2 ~~~P~~e~ik~q~~~i~e~i 21 (26)
T 1oef_A 2 WFEPLVEDMQRQWAGLVEKV 21 (26)
T ss_dssp CCTTHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHH
Confidence 57799999999999988654
No 9
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast ST genomics consortium, NESG; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=32.89 E-value=19 Score=25.88 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=28.4
Q ss_pred CCCCCEEEEECCcEEEeecCCceEEEEEEE-----EEE-eecccceeeeeCCCCceE
Q psy12157 83 LDNGEEVIMYSVKTIPLDNGEEVIMYSVKV-----RVS-TYVPQWHKTIPLDNGEEV 133 (148)
Q Consensus 83 lpngE~vV~Hnp~~mVhf~~~~v~~y~~~~-----~~~-~~~~~~~~~~~~~~~~~~ 133 (148)
++++|..-|+++++|+.-.+..+..|--|- -|+ .---.|-..+-|.||.+.
T Consensus 11 ~~~~~~~~~~~MKVMIR~~~~GLs~YVpKKDLEE~VVs~E~~~~WGG~vtLaNGw~l 67 (87)
T 2jn4_A 11 SSGRENLYFQGMKVMIRKTATGHSAYVAKKDLEELIVEMENPALWGGKVTLANGWQL 67 (87)
T ss_dssp -----------CCEEEEECSSCEEEEETTTTEEEEEEEESSSSSCSSEEEETTSCEE
T ss_pred cccccceeecCCeEEEEeCCCceEEEEeCCcchhheeeeecccccCcEEEECCccEE
Confidence 466789999999999998888777775431 122 223359999999999764
No 10
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=32.21 E-value=45 Score=24.05 Aligned_cols=33 Identities=15% Similarity=0.060 Sum_probs=28.3
Q ss_pred eeEEEEeeCceEEEEcCCeEEeeeecCCCCcceEe
Q psy12157 6 YFLSVVVLFGRYDVHITERERRAVYWTETPSEVRR 40 (148)
Q Consensus 6 ~~~~V~VdGGrYDVdL~~Re~~PVYW~gp~~EVRR 40 (148)
.++.|.++|-.|.||+..+...- =.|....|+|
T Consensus 57 ~~v~VkI~~~~y~Vdl~t~~A~~--~~G~~~~v~R 89 (99)
T 1x4r_A 57 KDTVVQIHNQDFTVDLSTNTATA--PQGQTFTVQR 89 (99)
T ss_dssp SEEEEEETTEEEEEETTTTEEEC--TTSCEEEEEE
T ss_pred CceEEEECCEEEEEEcCcceeec--CCCCEEEEEE
Confidence 57889999999999999988776 5677788988
Done!