RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12157
         (148 letters)



>gnl|CDD|212158 cd11613, SAF_AH_GD, Domains similar to fish antifreeze type III
           protein.  Altronate dehydratase (EC 4.2.1.7) converts
           D-altronate into 2-dehydro-3-deoxy-D-gluconate and is
           part of a bacterial pathway for the degradation of
           D-galacturonate. D-galactarate dehydratase (EC 4.2.1.42)
           eliminates water from D-galactarate to yield
           5-dehydro-4-deoxy-D-glucarate, initializing the
           degradation of D-galactarate. The function of the SAF
           domain in these enzymes is not clear. It may participate
           in dimerization.
          Length = 80

 Score = 34.7 bits (81), Expect = 0.002
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 98  PLDNGEEVIMYSVKVRVSTYVPQWHK--TIPLDNGEEVIMY 136
            L  GE V +    V +   +P  HK     +  GE VI Y
Sbjct: 17  DLKAGEVVEVDGEGVTLLEDIPAGHKIALRDIAAGEPVIKY 57


>gnl|CDD|224489 COG1573, COG1573, Uracil-DNA glycosylase [DNA replication,
           recombination, and repair].
          Length = 202

 Score = 27.7 bits (62), Expect = 2.0
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 6/67 (8%)

Query: 34  TPSEVRRCSWFYKASLEA----RYIPYEERVADLLEGEFKAAFTT--GQWHKTIPLDNGE 87
           TP E++ C  F +A +        +   E  A  L G      T   G+W    P   G 
Sbjct: 105 TPEEIKACRPFLEAEIALIRPKVILLLGEYAAKSLLGLKGEPITELRGRWGAYRPKGGGG 164

Query: 88  EVIMYSV 94
             +  + 
Sbjct: 165 IRVFPTY 171


>gnl|CDD|220425 pfam09822, ABC_transp_aux, ABC-type uncharacterized transport
          system.  This domain is found in various eukaryotic and
          prokaryotic intra-flagellar transport proteins involved
          in gliding motility, as well as in several hypothetical
          proteins.
          Length = 268

 Score = 27.3 bits (61), Expect = 3.1
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 1/29 (3%)

Query: 43 WFYKASLEARYIPYEERVADLLEGEFKAA 71
           F+   L     P   RV +LLE E+ A 
Sbjct: 31 VFFSGKLPPELKPLRPRVRELLE-EYAAL 58


>gnl|CDD|215491 PLN02906, PLN02906, xanthine dehydrogenase.
          Length = 1319

 Score = 27.4 bits (61), Expect = 3.2
 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 5/27 (18%)

Query: 97  IPLDNGEEVIMYSVKVRVSTYVPQWHK 123
              D+G EV M S     ST  PQ H+
Sbjct: 748 WTSDSGNEVHMIS-----STQAPQKHQ 769


>gnl|CDD|235966 PRK07207, PRK07207, ribonucleotide-diphosphate reductase subunit
           alpha; Validated.
          Length = 965

 Score = 26.8 bits (60), Expect = 5.2
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 11/53 (20%)

Query: 31  WTE-TPSEVRRCSWFYKASLEARYIPYEERVADLLEGEFKAAFTTGQWHKTIP 82
           WT  +PSEV      +  + E  Y  YE + A    GE K         K IP
Sbjct: 502 WTLFSPSEVPDLHDLFGKAFEEAYTAYEAKAA---RGEIKL-------FKKIP 544


>gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A
           [Amino acid transport and metabolism].
          Length = 648

 Score = 26.6 bits (59), Expect = 6.8
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 7/49 (14%)

Query: 60  VADLLE---GEFKAAFTTGQWHKTIPLDNGEEVIMYSVKTIPLDNGEEV 105
           VA  L+   G  +     G+  + + L     + M S       +G+EV
Sbjct: 310 VAGTLDNVSGRLEVYDLKGERIEEVELPPPGALGMGSAD----KDGDEV 354


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0722    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,686,566
Number of extensions: 686970
Number of successful extensions: 523
Number of sequences better than 10.0: 1
Number of HSP's gapped: 521
Number of HSP's successfully gapped: 10
Length of query: 148
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 60
Effective length of database: 7,034,450
Effective search space: 422067000
Effective search space used: 422067000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.6 bits)