RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12157
(148 letters)
>3k3s_A Altronate hydrolase; structural genomics, PSI-2, protein STR
initiative, midwest center for structural genomics,
MCSG; HET: MSE; 2.15A {Shigella flexneri 2a str}
Length = 105
Score = 33.6 bits (77), Expect = 0.006
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 15/70 (21%)
Query: 84 DNGEEVIMYSVKTI---PLDN----------GEEVIMYSVKVRVSTYVPQWHK--TIPLD 128
E + ++ I LDN G EV + + V + V + HK +
Sbjct: 12 SGRENLYFQGMQYIKIHALDNVAVALADLAEGTEVSVDNQTVTLRQDVARGHKFALTDIA 71
Query: 129 NGEEVIMYSV 138
G VI Y +
Sbjct: 72 KGANVIKYGL 81
>2c3n_A Glutathione S-transferase theta 1; glutathione transferase,
polymorphism; 1.5A {Homo sapiens} PDB: 2c3q_A* 2c3t_A
Length = 247
Score = 28.1 bits (63), Expect = 1.0
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 38 VRRCSWFYKASLEARYIPYEERVADLLEGE-FKAAFTTGQWHKTIPL--DNG 86
R F + IP+E R+ DL++G+ AF K +P D
Sbjct: 21 CRAVYIF----AKKNDIPFELRIVDLIKGQHLSDAFAQVNPLKKVPALKDGD 68
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 1.7
Identities = 25/147 (17%), Positives = 44/147 (29%), Gaps = 68/147 (46%)
Query: 29 VYWTETPSEVRRCSWFYKASLEARYIPYEERVADLLE-------------GEFKAAFTTG 75
Y+ E L Y Y V DL++ + + FT G
Sbjct: 168 DYFEE---------------LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 76 ----QWHKTIPLDN-----GEEVIMYSVKTIPLDNGEEVIM------YSVKVRVSTYVPQ 120
+W L+N ++ ++ + PL I Y V ++ + P
Sbjct: 213 LNILEW-----LENPSNTPDKDYLLSIPISCPL------IGVIQLAHYVVTAKLLGFTP- 260
Query: 121 WHKTIPLDNGEEVIMYSVKMEAVTGCA 147
GE + S ++ TG +
Sbjct: 261 ---------GE---LRSY-LKGATGHS 274
>1ljr_A HGST T2-2, glutathione S-transferase; HET: GSH; 3.20A {Homo
sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 2ljr_A 3ljr_A*
Length = 244
Score = 26.9 bits (60), Expect = 2.1
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 7/52 (13%)
Query: 38 VRRCSWFYKASLEARYIPYEERVADLLEGE-FKAAFTTGQWHKTIPL--DNG 86
R F + IP E R DL++G+ F +P D
Sbjct: 14 SRAVYIF----AKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDGD 61
>3ein_A GST class-theta, glutathione S-transferase 1-1; delta-class GST;
HET: GSH; 1.13A {Drosophila melanogaster} PDB: 3mak_A*
3f6f_A 3gh6_A* 1jlv_A*
Length = 209
Score = 27.2 bits (61), Expect = 2.2
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 30 YWTETPSEVRRCSWFYKASLEARYIPYEERVADLLEGE-FKAAF 72
Y+ S R +A + +++ +L GE K F
Sbjct: 5 YYLPGSSPCRSVIMT----AKAVGVELNKKLLNLQAGEHLKPEF 44
>1gnw_A Glutathione S-transferase; herbicide detoxification; HET: GTX;
2.20A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5
PDB: 1bx9_A*
Length = 211
Score = 26.4 bits (59), Expect = 3.5
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 29 VYWTETPSEVRRCSWFYKASLEARYIPYEERVADLLEGE-FKAAF 72
V+ RR L + + +E +L +GE K F
Sbjct: 5 VFGHPASIATRRVLIA----LHEKNLDFELVHVELKDGEHKKEPF 45
>1v2a_A Glutathione transferase GST1-6; glutathione S-transferase,
detoxification, xenobiotics; HET: GTS; 2.15A {Anopheles
dirus} SCOP: a.45.1.1 c.47.1.5
Length = 210
Score = 26.4 bits (59), Expect = 3.8
Identities = 2/35 (5%), Positives = 9/35 (25%), Gaps = 4/35 (11%)
Query: 38 VRRCSWFYKASLEARYIPYEERVADLLEGEFKAAF 72
+ + I + ++ + + A
Sbjct: 12 CQSAILL----AKKLGITLNLKKTNVHDPVERDAL 42
>3l8w_A Uricase, urate oxidase; oxidoreductase, URIC acid degradation,
xanthine, inhibition aspergillus flavus, peroxisome,
purine metabolism; HET: XAN 4PO; 1.00A {Aspergillus
flavus} PDB: 3l9g_A* 3lbg_A* 3ld4_A* 3bk8_A* 1r4s_A*
1r51_A* 1r56_A 1r4u_A* 1ws2_A* 1ws3_A 1xt4_A* 1xxj_A*
1xy3_A* 2fub_A* 2fxl_A* 3bjp_A* 1wrr_A* 3gko_A* 3p9o_A
2ic0_A* ...
Length = 296
Score = 26.0 bits (57), Expect = 4.8
Identities = 14/61 (22%), Positives = 23/61 (37%)
Query: 57 EERVADLLEGEFKAAFTTGQWHKTIPLDNGEEVIMYSVKTIPLDNGEEVIMYSVKVRVST 116
E V LLEGE + ++T + D+ + I + K P+ E +
Sbjct: 32 EMTVCVLLEGEIETSYTKADNSVIVATDSIKNTIYITAKQNPVTPPELFGSILGTHFIEK 91
Query: 117 Y 117
Y
Sbjct: 92 Y 92
>1e6b_A Glutathione S-transferase; 1.65A {Arabidopsis thaliana} SCOP:
a.45.1.1 c.47.1.5
Length = 221
Score = 25.6 bits (57), Expect = 5.6
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 30 YWTETPSEVRRCSWFYKASLEARYIPYEERVADLLEGE-FKAAF 72
YW + + R L + + YE +LL+G+ F + F
Sbjct: 14 YWRSSCA--HRVRIA----LALKGLDYEYIPVNLLKGDQFDSDF 51
>1pn9_A GST class-delta, glutathione S-transferase 1-6; protein inhibitor
complex; HET: GTX; 2.00A {Anopheles gambiae} SCOP:
a.45.1.1 c.47.1.5
Length = 209
Score = 25.6 bits (57), Expect = 6.1
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 6/44 (13%)
Query: 30 YWTETPSEVRRCSWFYKASLEARYIPYEERVADLLEGE-FKAAF 72
Y + R A + ++ DL++GE K F
Sbjct: 5 YLPGSAP-CRAVQMT----AAAVGVELNLKLTDLMKGEHMKPEF 43
>1axd_A Glutathione S-transferase I; transferase, herbicide
detoxification, transferase-transfera inhibitor
complex; HET: GGL CYW; 2.50A {Zea mays} SCOP: a.45.1.1
c.47.1.5 PDB: 1bye_A*
Length = 209
Score = 25.6 bits (57), Expect = 6.7
Identities = 7/44 (15%), Positives = 12/44 (27%), Gaps = 6/44 (13%)
Query: 30 YWTETPSEVRRCSWFYKASLEARYIPYEERVADLLEGE-FKAAF 72
+ + + RC+ LE YE + E
Sbjct: 7 GAVMSWN-LTRCATA----LEEAGSDYEIVPINFATAEHKSPEH 45
>3f6d_A Adgstd4-4, glutathione transferase GST1-4; HET: GTX; 1.70A
{Anopheles dirus} PDB: 3f63_A* 1jlw_A* 3g7i_A* 3g7j_A*
Length = 219
Score = 25.7 bits (57), Expect = 6.8
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 6/44 (13%)
Query: 30 YWTETPSEVRRCSWFYKASLEARYIPYEERVADLLEGE-FKAAF 72
Y + R A + ++ +L+ GE K F
Sbjct: 5 YLPGSAP-CRAVQMT----AAAVGVELNLKLTNLMAGEHMKPEF 43
>1ykw_A Rubisco-like protein; beta-alpha-barrel, unknown function; 2.00A
{Chlorobaculum tepidum} SCOP: c.1.14.1 d.58.9.1 PDB:
1tel_A
Length = 435
Score = 25.7 bits (56), Expect = 7.0
Identities = 12/55 (21%), Positives = 21/55 (38%)
Query: 53 YIPYEERVADLLEGEFKAAFTTGQWHKTIPLDNGEEVIMYSVKTIPLDNGEEVIM 107
+ EER A L + KA TG+ + E + + + NG ++
Sbjct: 208 WSSIEERAAHLGKARRKAEAETGEPKIYLANITDEVDSLMEKHDVAVRNGANALL 262
>1r5a_A Glutathione transferase; glutathione S-transferase, GST, GSH,
mosquito, detoxification, xenobiotics; HET: GTS; 2.50A
{Anopheles cracens} SCOP: a.45.1.1 c.47.1.5
Length = 218
Score = 25.3 bits (56), Expect = 7.8
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 30 YWTETPSEVRRCSWFYKASLEARYIPYEERVADLLEGE-FKAAF 72
Y +P R + + + +V +++EGE K F
Sbjct: 7 YLPASPP-CRSVLLL----AKMIGVELDLKVLNIMEGEQLKPDF 45
>2imi_A Epsilon-class glutathione S-transferase; HET: GSH; 1.40A
{Anopheles gambiae} PDB: 2il3_A* 2imk_A*
Length = 221
Score = 25.3 bits (56), Expect = 7.8
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 38 VRRCSWFYKASLEARYIPYEERVADLLEGE-FKAAF 72
R +A + E++ +LL G+ K F
Sbjct: 15 CRAVELT----AKALGLELEQKTINLLTGDHLKPEF 46
>3ay8_A Glutathione S-transferase; GST fold, GST binding, cytosolic;
2.10A {Bombyx mori}
Length = 216
Score = 25.3 bits (56), Expect = 8.6
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 29 VYWTETPSEVRRCSWFYKASLEARYIPYEERVADLLEGE-FKAAF 72
+Y R A IP + + +L + E + +F
Sbjct: 6 LYHFPVSGPSRGALLA----ARAIGIPIQIEIVNLFKKEQLQESF 46
>3qav_A RHO-class glutathione S-transferase; cytosol; 2.10A {Laternula
elliptica} PDB: 3qaw_A*
Length = 243
Score = 25.3 bits (56), Expect = 8.7
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 29 VYWTETPSEVRRCSWFYKASLEARYIPYEERVADLLEGE-FKAAF 72
VYW + L+ + I Y+E++ + E
Sbjct: 29 VYWGSGSPPCWKVLLV----LQEKKIDYDEKIISFSKKEHKSEEI 69
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint
center for structur genomics, JCSG, protein structure
initiative; 2.60A {Uncultured marine organism}
Length = 100
Score = 24.7 bits (54), Expect = 8.9
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 91 MYSVKTIPLDNGEEVI 106
M ++K + L GE++I
Sbjct: 2 MKNIKIMRLVTGEDII 17
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics
center for infectious disease, S mycobacterium, PLP,
schiff base; HET: LLP; 1.85A {Mycobacterium
tuberculosis}
Length = 414
Score = 25.2 bits (56), Expect = 9.1
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 57 EERVADLLEGEFKAAFTTGQ 76
EER+ + A +G
Sbjct: 87 EERLRLIEGAPAAFATASGM 106
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.414
Gapped
Lambda K H
0.267 0.0596 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,409,096
Number of extensions: 138059
Number of successful extensions: 268
Number of sequences better than 10.0: 1
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 30
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)