BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12159
         (162 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
           In Steroid Receptor Complexes
          Length = 457

 Score = 29.6 bits (65), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 6   ALGLLSIYHAKMISRGETSIEALINKLEAKKADSEGRIYANPYNFGRHTNWRLFLGLFHG 65
           ALGL S     +  RGE  +  L+N+ E+ K D E  +  NP N  +    ++F+     
Sbjct: 343 ALGLDSANEKGLYRRGEAQL--LMNEFESAKGDFEKVLEVNPQN--KAARLQIFMCQKKA 398

Query: 66  RSFLSRGETSIEALINKLEAKKADSE 91
           +    R   +   +  K   + A  E
Sbjct: 399 KEHNERDRRTYANMFKKFAEQDAKEE 424


>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
           In Steroid Receptor Complexes
          Length = 457

 Score = 28.9 bits (63), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 6   ALGLLSIYHAKMISRGETSIEALINKLEAKKADSEGRIYANPYN 49
           ALGL S     +  RGE  +  L+N+ E+ K D E  +  NP N
Sbjct: 343 ALGLDSANEKGLYRRGEAQL--LMNEFESAKGDFEKVLEVNPQN 384


>pdb|1PEM|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
           Typhimurium
 pdb|1PEO|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
           Typhimurium
 pdb|1PEQ|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
           Typhimurium
 pdb|1PEU|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
           Typhimurium
 pdb|2BQ1|E Chain E, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
           Salmonella Typhimurium
 pdb|2BQ1|F Chain F, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
           Salmonella Typhimurium
          Length = 714

 Score = 26.2 bits (56), Expect = 8.7,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 67  SFLSRGETSIEALINKLEAKKADSEGRIY 95
           S+++   +SI  ++ K+E +K    GR+Y
Sbjct: 593 SYINHATSSIHPIVAKIEIRKEGKTGRVY 621


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,239,778
Number of Sequences: 62578
Number of extensions: 219908
Number of successful extensions: 455
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 451
Number of HSP's gapped (non-prelim): 6
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)