Query psy12159
Match_columns 162
No_of_seqs 141 out of 294
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 20:13:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1314|consensus 99.7 3.6E-18 7.9E-23 150.5 6.7 98 1-101 197-308 (414)
2 KOG1313|consensus 99.7 2.8E-17 6E-22 141.0 5.0 88 3-143 218-305 (309)
3 KOG1315|consensus 98.7 1.2E-08 2.6E-13 89.0 4.4 29 2-30 204-232 (307)
4 KOG1314|consensus 97.7 4.5E-05 9.7E-10 68.3 4.7 64 69-146 214-281 (414)
5 KOG1311|consensus 97.6 3.8E-05 8.1E-10 65.5 3.1 55 5-68 216-271 (299)
6 COG5273 Uncharacterized protei 92.7 0.088 1.9E-06 46.1 2.7 103 3-147 205-307 (309)
7 KOG1311|consensus 92.3 0.18 3.9E-06 43.0 4.0 60 69-141 229-291 (299)
8 KOG1313|consensus 89.1 0.23 5E-06 43.6 1.8 32 48-87 220-251 (309)
9 PF09551 Spore_II_R: Stage II 51.4 4.8 0.0001 31.5 -0.1 31 99-130 93-123 (130)
10 PF05814 DUF843: Baculovirus p 47.3 25 0.00054 25.7 3.1 35 5-40 33-67 (83)
11 PLN02453 complex I subunit 32.4 37 0.00079 25.8 2.1 26 15-40 78-103 (105)
12 TIGR02837 spore_II_R stage II 31.5 15 0.00033 30.0 -0.1 28 101-129 130-157 (168)
13 PF10183 ESSS: ESSS subunit of 30.2 61 0.0013 24.0 3.0 34 2-38 66-99 (105)
14 PF11808 DUF3329: Domain of un 25.9 65 0.0014 23.0 2.4 18 2-19 32-49 (90)
15 cd00069 GHB Glycoprotein hormo 25.1 43 0.00094 25.2 1.4 27 136-162 54-83 (102)
16 smart00068 GHB Glycoprotein ho 24.6 44 0.00096 25.4 1.4 28 135-162 57-87 (107)
No 1
>KOG1314|consensus
Probab=99.73 E-value=3.6e-18 Score=150.45 Aligned_cols=98 Identities=24% Similarity=0.361 Sum_probs=86.5
Q ss_pred ChhHHHHHHHHHHHHHHhhcCCcceehhhchHHHHHHh--hcC--CcccCccchhhhhhHHhhhhcc-----CCcee-ec
Q psy12159 1 MSVFVALGLLSIYHAKMISRGETSIEALINKLEAKKAD--SEG--RIYANPYNFGRHTNWRLFLGLF-----HGRSF-LS 70 (162)
Q Consensus 1 ~~v~lalg~L~~whi~LI~rNeTtIE~~~~~~~~~~~~--~~~--~~f~NPYdlG~~~Nw~~~~g~~-----~g~~~-i~ 70 (162)
+||+||+++|++.||+.|++|+|.||+||++|+..|++ ... .+|.+|||+|++.|.++||-.. .|+.| |.
T Consensus 197 ~gv~la~t~Lf~~qlk~Il~nrt~IE~wi~~Ka~~rr~~~~~d~~~~f~ypydlgWr~n~r~vf~~~~~~~gdg~~wPv~ 276 (414)
T KOG1314|consen 197 IGVVLALTMLFFIQLKQILNNRTGIESWIVEKAMDRREYYFNDDEGEFTYPYDLGWRINLREVFFQNKKEEGDGIEWPVV 276 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhccCCCCceeeeccccccccHHHHhhhccccCCCCcccccc
Confidence 47899999999999999999999999999999987663 223 6799999999999999999776 39999 99
Q ss_pred cCc----ccHHHHHhHHHHhhhhccCCeeecccCc
Q psy12159 71 RGE----TSIEALINKLEAKKADSEGRIYANPYNF 101 (162)
Q Consensus 71 ~g~----ttIE~l~Nk~~~~r~k~~~r~y~nPydl 101 (162)
.|| .||||+.||. +||.| .|.|+++++.
T Consensus 277 ~gc~qytlt~eql~qk~-~kr~r--sr~~~~~~~~ 308 (414)
T KOG1314|consen 277 EGCVQYTLTIEQLTQKL-DKRGR--SRLFKCIEDV 308 (414)
T ss_pred CcccccceeHHHHHHHH-HhhcC--eEEEEeccCC
Confidence 999 6999999998 67776 8999999984
No 2
>KOG1313|consensus
Probab=99.68 E-value=2.8e-17 Score=140.99 Aligned_cols=88 Identities=53% Similarity=0.851 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHHhhcCCcceehhhchHHHHHHhhcCCcccCccchhhhhhHHhhhhccCCceeeccCcccHHHHHhH
Q psy12159 3 VFVALGLLSIYHAKMISRGETSIEALINKLEAKKADSEGRIYANPYNFGRHTNWRLFLGLFHGRSFLSRGETSIEALINK 82 (162)
Q Consensus 3 v~lalg~L~~whi~LI~rNeTtIE~~~~~~~~~~~~~~~~~f~NPYdlG~~~Nw~~~~g~~~g~~~i~~g~ttIE~l~Nk 82 (162)
+.+|||.|+.||.++|++++|+||..++.+++++..++
T Consensus 218 ~lv~vg~l~~W~~vlI~~G~tsi~~~~~~~e~k~~~a~------------------------------------------ 255 (309)
T KOG1313|consen 218 VLVAVGLLTAWHAVLISRGETSIEQLINIKERKRYLAH------------------------------------------ 255 (309)
T ss_pred HHHHHHHHHHHhheeeehhhhhHHHHHHHHHhHhHHHh------------------------------------------
Confidence 57889999999999999999999999988887654332
Q ss_pred HHHhhhhccCCeeecccCchhhhhhhhhhcccCCCcceeeeeecCCCCCCCCCceeeccCC
Q psy12159 83 LEAKKADSEGRIYANPYNFGRHTNWRLFLGLFHGRSFWRHVLLPSGHKPLGDGLTWTSTYS 143 (162)
Q Consensus 83 ~~~~r~k~~~r~y~nPydlG~~~N~~~~lg~~~~r~~~~~vllPs~~~p~gdG~~w~~~~~ 143 (162)
+| +||||+|.|.|||+|||+.++|++|++|+||+.++|.+.|.+|++.+.
T Consensus 256 ---------~R--~~~~n~g~k~nWr~fLg~~~~r~~wk~v~lPt~~~p~~~~~~~~~~da 305 (309)
T KOG1313|consen 256 ---------LR--SNPTNFGGKANWRNFLGLFRGRHFWKTVLLPTIRKPVKYGDSKEKSDA 305 (309)
T ss_pred ---------cc--CCCcccchHHHHHHhhccccCCceeEEEeccccccccccCCcccccch
Confidence 44 899999999999999999999999999999999999999999996554
No 3
>KOG1315|consensus
Probab=98.71 E-value=1.2e-08 Score=89.04 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHhhcCCcceehhhc
Q psy12159 2 SVFVALGLLSIYHAKMISRGETSIEALIN 30 (162)
Q Consensus 2 ~v~lalg~L~~whi~LI~rNeTtIE~~~~ 30 (162)
+..++++.|++||++||++|+||||.+.-
T Consensus 204 ~f~i~l~~~l~~h~~Li~~N~TTiE~~~~ 232 (307)
T KOG1315|consen 204 AFSISLSGLLCFHTYLILKNKTTIEAYKS 232 (307)
T ss_pred HHHHHHHHHHHHHHHHHHcCchhHhhhcc
Confidence 45677888999999999999999999973
No 4
>KOG1314|consensus
Probab=97.70 E-value=4.5e-05 Score=68.33 Aligned_cols=64 Identities=22% Similarity=0.376 Sum_probs=48.1
Q ss_pred eccCcccHHHHHhHH-HHhh---hhccCCeeecccCchhhhhhhhhhcccCCCcceeeeeecCCCCCCCCCceeeccCCC
Q psy12159 69 LSRGETSIEALINKL-EAKK---ADSEGRIYANPYNFGRHTNWRLFLGLFHGRSFWRHVLLPSGHKPLGDGLTWTSTYSP 144 (162)
Q Consensus 69 i~~g~ttIE~l~Nk~-~~~r---~k~~~r~y~nPydlG~~~N~~~~lg~~~~r~~~~~vllPs~~~p~gdG~~w~~~~~~ 144 (162)
|.++.|.||.-+-++ .+.| ..+....|..|||+||+.|.+++|--. ..+.|||+.||+.+++
T Consensus 214 Il~nrt~IE~wi~~Ka~~rr~~~~~d~~~~f~ypydlgWr~n~r~vf~~~--------------~~~~gdg~~wPv~~gc 279 (414)
T KOG1314|consen 214 ILNNRTGIESWIVEKAMDRREYYFNDDEGEFTYPYDLGWRINLREVFFQN--------------KKEEGDGIEWPVVEGC 279 (414)
T ss_pred HHcCCcchHHHHHHHHHHHHHhhccCCCCceeeeccccccccHHHHhhhc--------------cccCCCCccccccCcc
Confidence 678999999988322 2222 222237899999999999999988422 3589999999999998
Q ss_pred CC
Q psy12159 145 LA 146 (162)
Q Consensus 145 ~~ 146 (162)
.+
T Consensus 280 ~q 281 (414)
T KOG1314|consen 280 VQ 281 (414)
T ss_pred cc
Confidence 65
No 5
>KOG1311|consensus
Probab=97.63 E-value=3.8e-05 Score=65.47 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhhcCCcceehhhchHHHHHHhhcCCcc-cCccchhhhhhHHhhhhccCCcee
Q psy12159 5 VALGLLSIYHAKMISRGETSIEALINKLEAKKADSEGRIY-ANPYNFGRHTNWRLFLGLFHGRSF 68 (162)
Q Consensus 5 lalg~L~~whi~LI~rNeTtIE~~~~~~~~~~~~~~~~~f-~NPYdlG~~~Nw~~~~g~~~g~~~ 68 (162)
+.++.|+.+|+++|.+|+||+|+... + .... .+|||.|...|++++||......|
T Consensus 216 ~~~~~l~~fh~~li~~~~Tt~e~~~~--~-------~~~~~~~~~~~g~~~n~~~~~~~~~~~~~ 271 (299)
T KOG1311|consen 216 AFTSALLCFHIYLIKSGSTTYESIKS--L-------DFVSRSNPYDLGLLKNLQEVFGGPLPLSW 271 (299)
T ss_pred HHHHHHHHhheeeEecCcchhhhhhc--c-------ccccccCCCchhHHHHHHHHhCCCCCccc
Confidence 44566999999999999999987764 1 1112 599999999999999977654433
No 6
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=92.71 E-value=0.088 Score=46.07 Aligned_cols=103 Identities=21% Similarity=0.185 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHHhhcCCcceehhhchHHHHHHhhcCCcccCccchhhhhhHHhhhhccCCceeeccCcccHHHHHhH
Q psy12159 3 VFVALGLLSIYHAKMISRGETSIEALINKLEAKKADSEGRIYANPYNFGRHTNWRLFLGLFHGRSFLSRGETSIEALINK 82 (162)
Q Consensus 3 v~lalg~L~~whi~LI~rNeTtIE~~~~~~~~~~~~~~~~~f~NPYdlG~~~Nw~~~~g~~~g~~~i~~g~ttIE~l~Nk 82 (162)
+++.+.+|+..|.++++.|+|++|.++..+..+..+- .|+..+. | ..+ .+.
T Consensus 205 ~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~------~~~~~~~--~--~~~-------------------~~~ 255 (309)
T COG5273 205 FFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEF------FPLCRES--N--LPF-------------------TNI 255 (309)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhccceecccc------cchhccC--C--cCc-------------------eec
Confidence 4666777899999999999999999986554432210 1111111 1 000 000
Q ss_pred HHHhhhhccCCeeecccCchhhhhhhhhhcccCCCcceeeeeecCCCCCCCCCceeeccCCCCCC
Q psy12159 83 LEAKKADSEGRIYANPYNFGRHTNWRLFLGLFHGRSFWRHVLLPSGHKPLGDGLTWTSTYSPLAD 147 (162)
Q Consensus 83 ~~~~r~k~~~r~y~nPydlG~~~N~~~~lg~~~~r~~~~~vllPs~~~p~gdG~~w~~~~~~~~~ 147 (162)
. + .-...+|++.|..+|+..+.+.... .++.| .+.+..++.+++.+.+..++
T Consensus 256 ~-----d--~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~ 307 (309)
T COG5273 256 F-----D--SSEGALPLDLGIGQNLSTIKGSNAL-----YWLTP-LHTNYCNSYDFSLRSDTLAE 307 (309)
T ss_pred c-----C--CCccccccccCccccceeecCCCce-----eeccc-cccCCCCccCcccchhhccc
Confidence 0 0 1227899999999999999986522 34555 35566888888877766554
No 7
>KOG1311|consensus
Probab=92.26 E-value=0.18 Score=42.99 Aligned_cols=60 Identities=25% Similarity=0.280 Sum_probs=41.4
Q ss_pred eccCcccHHHHHhHHHHhhhhccCCee-ecccCchhhhhhhhhhcccCCCcceeeeeecCCC--CCCCCCceeecc
Q psy12159 69 LSRGETSIEALINKLEAKKADSEGRIY-ANPYNFGRHTNWRLFLGLFHGRSFWRHVLLPSGH--KPLGDGLTWTST 141 (162)
Q Consensus 69 i~~g~ttIE~l~Nk~~~~r~k~~~r~y-~nPydlG~~~N~~~~lg~~~~r~~~~~vllPs~~--~p~gdG~~w~~~ 141 (162)
|++|.||+|+.++ + + ... .+|||.|..+|++.+||..... .++-|... .+..||-.|...
T Consensus 229 i~~~~Tt~e~~~~-~---~-----~~~~~~~~~~g~~~n~~~~~~~~~~~----~~~~p~~~~~~~p~~~~~~~~~ 291 (299)
T KOG1311|consen 229 IKSGSTTYESIKS-L---D-----FVSRSNPYDLGLLKNLQEVFGGPLPL----SWLSPFARSGPLPHDGEGGPPT 291 (299)
T ss_pred EecCcchhhhhhc-c---c-----cccccCCCchhHHHHHHHHhCCCCCc----ccccccccCCCCCCCCCCCCcc
Confidence 8999999999887 1 1 122 5999999999999999865443 34455543 244566655433
No 8
>KOG1313|consensus
Probab=89.14 E-value=0.23 Score=43.64 Aligned_cols=32 Identities=53% Similarity=0.725 Sum_probs=26.0
Q ss_pred cchhhhhhHHhhhhccCCceeeccCcccHHHHHhHHHHhh
Q psy12159 48 YNFGRHTNWRLFLGLFHGRSFLSRGETSIEALINKLEAKK 87 (162)
Q Consensus 48 YdlG~~~Nw~~~~g~~~g~~~i~~g~ttIE~l~Nk~~~~r 87 (162)
.-+|.+.-|+.|+ |++|||+||+++|.++.|+
T Consensus 220 v~vg~l~~W~~vl--------I~~G~tsi~~~~~~~e~k~ 251 (309)
T KOG1313|consen 220 VAVGLLTAWHAVL--------ISRGETSIEQLINIKERKR 251 (309)
T ss_pred HHHHHHHHHhhee--------eehhhhhHHHHHHHHHhHh
Confidence 3456667777777 9999999999999997765
No 9
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=51.42 E-value=4.8 Score=31.51 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=25.2
Q ss_pred cCchhhhhhhhhhcccCCCcceeeeeecCCCC
Q psy12159 99 YNFGRHTNWRLFLGLFHGRSFWRHVLLPSGHK 130 (162)
Q Consensus 99 ydlG~~~N~~~~lg~~~~r~~~~~vllPs~~~ 130 (162)
|--|..+-++..+|-..|..|| +||+|...-
T Consensus 93 ~PaG~YeAlrI~IG~g~G~NWW-CVLfPpLCf 123 (130)
T PF09551_consen 93 LPAGEYEALRITIGEGKGHNWW-CVLFPPLCF 123 (130)
T ss_pred ccCCceEEEEEEecCccCcceE-EEecCCcee
Confidence 3447788899999999999988 999997543
No 10
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=47.26 E-value=25 Score=25.70 Aligned_cols=35 Identities=9% Similarity=0.134 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhcCCcceehhhchHHHHHHhhc
Q psy12159 5 VALGLLSIYHAKMISRGETSIEALINKLEAKKADSE 40 (162)
Q Consensus 5 lalg~L~~whi~LI~rNeTtIE~~~~~~~~~~~~~~ 40 (162)
+.+..++.-|+|.+ +.|++.....++++++..+++
T Consensus 33 lfviF~~~L~~yy~-kteS~~~dL~t~k~K~~KKK~ 67 (83)
T PF05814_consen 33 LFVIFFCVLQVYYI-KTESTPQDLQTEKAKSIKKKR 67 (83)
T ss_pred HHHHHHHHHHHHHc-CCCCcHHHHhhhhhhhHHHHH
Confidence 34455677899977 999999999888877654443
No 11
>PLN02453 complex I subunit
Probab=32.40 E-value=37 Score=25.83 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=21.2
Q ss_pred HHHhhcCCcceehhhchHHHHHHhhc
Q psy12159 15 AKMISRGETSIEALINKLEAKKADSE 40 (162)
Q Consensus 15 i~LI~rNeTtIE~~~~~~~~~~~~~~ 40 (162)
+-|-.+=-||||.|..+++++|+++.
T Consensus 78 Vgl~aKPDtsIqtWA~~eA~~RLe~e 103 (105)
T PLN02453 78 VGLNAKPDTRIETWAHQKALERLEAE 103 (105)
T ss_pred eeeeccCCCcHHHHHHHHHHHHHHhc
Confidence 44556789999999999999887654
No 12
>TIGR02837 spore_II_R stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage II sporulation protein R.
Probab=31.53 E-value=15 Score=29.96 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=23.0
Q ss_pred chhhhhhhhhhcccCCCcceeeeeecCCC
Q psy12159 101 FGRHTNWRLFLGLFHGRSFWRHVLLPSGH 129 (162)
Q Consensus 101 lG~~~N~~~~lg~~~~r~~~~~vllPs~~ 129 (162)
-|..+=++..+|-..|..|| +||+|...
T Consensus 130 aG~YeAlrI~IG~g~G~NWW-CVlfPpLC 157 (168)
T TIGR02837 130 AGEYEALRILIGEGAGANWW-CVVFPPLC 157 (168)
T ss_pred CCceEEEEEEecCcCCcceE-EEecCcce
Confidence 47777888899998888888 99999753
No 13
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=30.16 E-value=61 Score=23.98 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHhhcCCcceehhhchHHHHHHh
Q psy12159 2 SVFVALGLLSIYHAKMISRGETSIEALINKLEAKKAD 38 (162)
Q Consensus 2 ~v~lalg~L~~whi~LI~rNeTtIE~~~~~~~~~~~~ 38 (162)
++++++.++.++.+| +=-|+|+.|..+.+..+++
T Consensus 66 ~~~~~~v~~~~~~~y---~PD~~i~~WA~rEA~~rl~ 99 (105)
T PF10183_consen 66 GFSGSLVFGGVFLAY---KPDTSIQTWARREAYRRLE 99 (105)
T ss_pred HHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHh
Confidence 345555555555555 5689999999888877653
No 14
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=25.94 E-value=65 Score=23.01 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHhh
Q psy12159 2 SVFVALGLLSIYHAKMIS 19 (162)
Q Consensus 2 ~v~lalg~L~~whi~LI~ 19 (162)
++++++.++++||++.+.
T Consensus 32 ~l~~~l~~~l~wh~~~l~ 49 (90)
T PF11808_consen 32 ALLLGLLLYLFWHLYQLY 49 (90)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355666778889998655
No 15
>cd00069 GHB Glycoprotein hormone beta chain homologues. Gonadotropins; reproductive hormones consisting of two glycosylated chains (alpha and beta) of similar topology with Cysteine-knot motifs.
Probab=25.14 E-value=43 Score=25.20 Aligned_cols=27 Identities=33% Similarity=0.769 Sum_probs=15.9
Q ss_pred ceeeccCCCC-CCCCcceeeeee--eeecC
Q psy12159 136 LTWTSTYSPL-ADNIGTHFTWPV--SCRCG 162 (162)
Q Consensus 136 ~~w~~~~~~~-~~~~~~~~~~~~--~~~~~ 162 (162)
+.|++..-|. +.+.--.|+.|| ||+|+
T Consensus 54 ~~Y~tv~lpgCp~gvdp~~tYPVAlsC~C~ 83 (102)
T cd00069 54 LSYETVRLPGCPPGVDPGVTYPVALSCHCG 83 (102)
T ss_pred EEEEEEECCCCcCCCCCCEEeeeecccccC
Confidence 5555554332 234556688886 78885
No 16
>smart00068 GHB Glycoprotein hormone beta chain homologues. Also called gonadotropins. Glycoprotein hormones consist of two glycosylated chains (alpha and beta) of similar topology.
Probab=24.58 E-value=44 Score=25.37 Aligned_cols=28 Identities=32% Similarity=0.705 Sum_probs=16.7
Q ss_pred CceeeccCCCC-CCCCcceeeeee--eeecC
Q psy12159 135 GLTWTSTYSPL-ADNIGTHFTWPV--SCRCG 162 (162)
Q Consensus 135 G~~w~~~~~~~-~~~~~~~~~~~~--~~~~~ 162 (162)
-+.|++..-|. +.+.--+|+.|| ||+|+
T Consensus 57 d~~Y~tv~lpgCp~gvdp~~tYPVAlSC~C~ 87 (107)
T smart00068 57 ELRYETVRLPGCPPGVDPVVTYPVALSCHCG 87 (107)
T ss_pred ceEEEEEECCCccCCCCCcEEeeeecccCCC
Confidence 45555554332 234556788886 78885
Done!