Query psy12159
Match_columns 162
No_of_seqs 141 out of 294
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 20:13:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 26.7 46 0.0016 22.6 2.8 13 7-19 26-38 (79)
2 4ay9_B Follitropin subunit bet 19.1 44 0.0015 24.4 1.5 15 148-162 69-85 (111)
3 2l6l_A DNAJ homolog subfamily 12.5 64 0.0022 23.6 0.9 9 154-162 110-118 (155)
4 1hcn_B Human chorionic gonadot 12.3 83 0.0029 23.9 1.5 28 135-162 61-91 (145)
5 1yop_A KTI11P; zinc finger, me 8.2 1.2E+02 0.004 20.9 0.9 9 154-162 21-29 (83)
6 2x8n_A CV0863; non-uniform sam 7.5 1.4E+02 0.0046 21.4 1.0 13 130-142 73-85 (111)
7 1wge_A Hypothetical protein 26 6.8 1.4E+02 0.0049 20.5 0.8 9 154-162 28-36 (83)
8 3zqs_A E3 ubiquitin-protein li 6.2 4.7E+02 0.016 20.3 3.6 33 75-114 151-183 (186)
9 3k8r_A Uncharacterized protein 5.7 1.6E+02 0.0054 21.5 0.5 13 130-142 73-85 (124)
10 1bhu_A SMPI, metalloproteinase 5.5 1.2E+02 0.004 21.2 -0.3 26 122-147 36-61 (102)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=26.71 E-value=46 Score=22.61 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhh
Q psy12159 7 LGLLSIYHAKMIS 19 (162)
Q Consensus 7 lg~L~~whi~LI~ 19 (162)
+.+|++|-+..-.
T Consensus 26 llllliwk~~~~i 38 (79)
T 2knc_B 26 LAALLIWKLLITI 38 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334555555333
No 2
>4ay9_B Follitropin subunit beta; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_B* 1fl7_B*
Probab=19.12 E-value=44 Score=24.42 Aligned_cols=15 Identities=40% Similarity=1.181 Sum_probs=10.8
Q ss_pred CCcceeeeee--eeecC
Q psy12159 148 NIGTHFTWPV--SCRCG 162 (162)
Q Consensus 148 ~~~~~~~~~~--~~~~~ 162 (162)
++--.|+.|| ||+|+
T Consensus 69 gVdP~~tYPVA~sC~C~ 85 (111)
T 4ay9_B 69 HADSLYTYPVATQCHCG 85 (111)
T ss_dssp SCCEEEEEEEEEEEEEE
T ss_pred CCCCCEEeeecccccCC
Confidence 3445788886 79885
No 3
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=12.48 E-value=64 Score=23.64 Aligned_cols=9 Identities=56% Similarity=1.490 Sum_probs=7.6
Q ss_pred eeeeeeecC
Q psy12159 154 TWPVSCRCG 162 (162)
Q Consensus 154 ~~~~~~~~~ 162 (162)
+|..+||||
T Consensus 110 ~f~~~CrCG 118 (155)
T 2l6l_A 110 SFYLSCRCG 118 (155)
T ss_dssp EEEEECSSS
T ss_pred EEEEcCCCC
Confidence 577899997
No 4
>1hcn_B Human chorionic gonadotropin; hormone; HET: NAG; 2.60A {Homo sapiens} SCOP: g.17.1.4 PDB: 1hrp_B* 1qfw_B*
Probab=12.28 E-value=83 Score=23.94 Aligned_cols=28 Identities=21% Similarity=0.567 Sum_probs=16.2
Q ss_pred CceeeccCCC-CCCCCcceeeeee--eeecC
Q psy12159 135 GLTWTSTYSP-LADNIGTHFTWPV--SCRCG 162 (162)
Q Consensus 135 G~~w~~~~~~-~~~~~~~~~~~~~--~~~~~ 162 (162)
.+.+.+..-| =+.++--.|+.|| ||+|+
T Consensus 61 e~~y~tv~LpgC~~gvdp~~tYPVA~SC~C~ 91 (145)
T 1hcn_B 61 DVRFESIRLPGCPRGVNPVVSYAVALSCQCA 91 (145)
T ss_dssp EEEEEEEECTTCCSSCCCEEEEEEEEEEEEE
T ss_pred CEEEEEEEcCCCcCCCCccEEecccccccCC
Confidence 4444444332 1345556788876 89985
No 5
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=8.25 E-value=1.2e+02 Score=20.91 Aligned_cols=9 Identities=33% Similarity=1.150 Sum_probs=6.5
Q ss_pred eeeeeeecC
Q psy12159 154 TWPVSCRCG 162 (162)
Q Consensus 154 ~~~~~~~~~ 162 (162)
+|=-.||||
T Consensus 21 ~y~ypCrCG 29 (83)
T 1yop_A 21 MFTYPCPCG 29 (83)
T ss_dssp EEEEEETTT
T ss_pred EEEEeCCCC
Confidence 355679998
No 6
>2x8n_A CV0863; non-uniform sampling, multidimensional decomposition, abacus, fragment monte carlo, structural genomics; NMR {Chromobacterium violaceum atcc 12472}
Probab=7.46 E-value=1.4e+02 Score=21.44 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=10.5
Q ss_pred CCCCCCceeeccC
Q psy12159 130 KPLGDGLTWTSTY 142 (162)
Q Consensus 130 ~p~gdG~~w~~~~ 142 (162)
.|.|.|++||..+
T Consensus 73 ~~~G~gihWp~LD 85 (111)
T 2x8n_A 73 SPSGLGVYFETLE 85 (111)
T ss_dssp CTTSSSEEETTTT
T ss_pred eCCCCEEECCCCC
Confidence 4678999998776
No 7
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=6.78 E-value=1.4e+02 Score=20.46 Aligned_cols=9 Identities=44% Similarity=1.139 Sum_probs=6.5
Q ss_pred eeeeeeecC
Q psy12159 154 TWPVSCRCG 162 (162)
Q Consensus 154 ~~~~~~~~~ 162 (162)
+|=-.||||
T Consensus 28 ~y~y~CrCG 36 (83)
T 1wge_A 28 TYFYPCPCG 36 (83)
T ss_dssp EEEECCSSS
T ss_pred EEEEeCCCC
Confidence 455669997
No 8
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=6.17 E-value=4.7e+02 Score=20.34 Aligned_cols=33 Identities=15% Similarity=-0.033 Sum_probs=25.3
Q ss_pred cHHHHHhHHHHhhhhccCCeeecccCchhhhhhhhhhccc
Q psy12159 75 SIEALINKLEAKKADSEGRIYANPYNFGRHTNWRLFLGLF 114 (162)
Q Consensus 75 tIE~l~Nk~~~~r~k~~~r~y~nPydlG~~~N~~~~lg~~ 114 (162)
-+..+.+++.+...++.- +..+.+|++.+|++.
T Consensus 151 ~v~~lr~~~~~nl~~Wd~-------~~~i~~NL~~il~i~ 183 (186)
T 3zqs_A 151 VVKPLGIKLSRNIHLWDP-------ENSVLQNLKDVLEID 183 (186)
T ss_dssp HHHHHHHHHHHHGGGCCT-------TSCHHHHHHHHHTCC
T ss_pred HHHHHHHHHhhhHhhcCC-------CCCHHHHHHHHHCCc
Confidence 456778888877766553 458999999999975
No 9
>3k8r_A Uncharacterized protein; unknown function, structural genomics, joint center for STRU genomics, JCSG; 2.75A {Rhodospirillum rubrum atcc 11170}
Probab=5.66 E-value=1.6e+02 Score=21.54 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=10.3
Q ss_pred CCCCCCceeeccC
Q psy12159 130 KPLGDGLTWTSTY 142 (162)
Q Consensus 130 ~p~gdG~~w~~~~ 142 (162)
.|.|.|+|||..+
T Consensus 73 ~~~G~GihWp~LD 85 (124)
T 3k8r_A 73 LGQGYGLHWETLD 85 (124)
T ss_dssp ETTTTEEEETTTT
T ss_pred cCCCCEEecCccc
Confidence 4578999998765
No 10
>1bhu_A SMPI, metalloproteinase inhibitor; signal; NMR {Streptomyces nigrescens} SCOP: b.11.1.3
Probab=5.49 E-value=1.2e+02 Score=21.24 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=20.6
Q ss_pred eeeecCCCCCCCCCceeeccCCCCCC
Q psy12159 122 HVLLPSGHKPLGDGLTWTSTYSPLAD 147 (162)
Q Consensus 122 ~vllPs~~~p~gdG~~w~~~~~~~~~ 147 (162)
-|-||.+..+..+|.||..+++|...
T Consensus 36 gvklpasarsfangthftlrygpark 61 (102)
T 1bhu_A 36 GVKLPASARSFANGTHFTLRYGPARK 61 (102)
T ss_dssp EECCCCTTCBEECSSCCEEEEEECCC
T ss_pred ccccchhhhhccCCceEEEeecCcee
Confidence 46688888888899999888887654
Done!