Query psy12159
Match_columns 162
No_of_seqs 141 out of 294
Neff 5.0
Searched_HMMs 13730
Date Fri Aug 16 20:14:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12159.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12159hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hcnb_ g.17.1.4 (B:) Gonadotr 24.6 14 0.001 25.4 1.5 28 135-162 60-90 (110)
2 d1xwdb1 g.17.1.4 (B:3-107) Fol 21.7 15 0.0011 24.9 1.2 15 148-162 67-83 (105)
3 d1jmsa3 a.60.12.1 (A:243-302) 9.9 23 0.0016 21.5 -0.5 16 65-80 21-36 (60)
4 d2fcaa1 c.66.1.53 (A:10-213) t 9.7 1.8E+02 0.013 20.3 4.6 38 40-80 8-45 (204)
5 d2bcqa2 a.60.12.1 (A:329-385) 8.4 42 0.003 20.1 0.3 17 65-81 21-37 (57)
6 d1kqfc_ f.21.1.1 (C:) Formate 8.2 90 0.0066 21.7 2.2 27 4-30 158-184 (216)
7 d1kqha_ g.3.6.2 (A:) ACTX-HI:O 8.2 46 0.0033 18.2 0.4 10 151-160 25-34 (38)
8 d1wgea1 g.41.17.1 (A:8-77) Del 8.0 54 0.004 20.4 0.8 9 152-162 21-29 (70)
9 d1yzha1 c.66.1.53 (A:8-211) tR 7.8 2.3E+02 0.017 19.7 4.5 40 40-80 8-47 (204)
10 d1ywsa1 g.41.17.1 (A:1-82) Dip 7.0 64 0.0047 20.7 0.8 9 152-162 20-28 (82)
No 1
>d1hcnb_ g.17.1.4 (B:) Gonadotropin B chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.61 E-value=14 Score=25.40 Aligned_cols=28 Identities=21% Similarity=0.533 Sum_probs=16.1
Q ss_pred CceeeccCCCC-CCCCcceeeeee--eeecC
Q psy12159 135 GLTWTSTYSPL-ADNIGTHFTWPV--SCRCG 162 (162)
Q Consensus 135 G~~w~~~~~~~-~~~~~~~~~~~~--~~~~~ 162 (162)
.+.+.+..-|. +.++--+|+.|| ||+|+
T Consensus 60 ~~~y~tv~LpgCp~gVdP~~tYPVAlsC~C~ 90 (110)
T d1hcnb_ 60 DVRFESIRLPGCPRGVNPVVSYAVALSCQCA 90 (110)
T ss_dssp EEEEEEEECTTCCSSCCCEEEEEEEEEEEEE
T ss_pred CeEEEEEECCCCCCCCCCcEEeeeccccccC
Confidence 44554443221 234445799997 79885
No 2
>d1xwdb1 g.17.1.4 (B:3-107) Follicle stimulating hormone, follitropin, beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.74 E-value=15 Score=24.93 Aligned_cols=15 Identities=40% Similarity=1.181 Sum_probs=10.9
Q ss_pred CCcceeeeee--eeecC
Q psy12159 148 NIGTHFTWPV--SCRCG 162 (162)
Q Consensus 148 ~~~~~~~~~~--~~~~~ 162 (162)
++--+|+.|| ||+|+
T Consensus 67 gVdP~~tYPVA~sC~C~ 83 (105)
T d1xwdb1 67 HADSLYTYPVATQCHCG 83 (105)
T ss_dssp BCCEEEEEEEEEEEEEE
T ss_pred CCCCcEEeeeccccccC
Confidence 4445799997 78885
No 3
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.94 E-value=23 Score=21.50 Aligned_cols=16 Identities=6% Similarity=0.256 Sum_probs=13.4
Q ss_pred CceeeccCcccHHHHH
Q psy12159 65 GRSFLSRGETSIEALI 80 (162)
Q Consensus 65 g~~~i~~g~ttIE~l~ 80 (162)
-+.|+.+|..|||.++
T Consensus 21 A~~l~~~Gi~ti~dL~ 36 (60)
T d1jmsa3 21 AEKWFRMGFRTLSKIQ 36 (60)
T ss_dssp HHHHHHTTCCSHHHHH
T ss_pred HHHHHHhCCCCHHHHH
Confidence 4567889999999997
No 4
>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}
Probab=9.68 E-value=1.8e+02 Score=20.26 Aligned_cols=38 Identities=13% Similarity=0.259 Sum_probs=25.6
Q ss_pred cCCcccCccchhhhhhHHhhhhccCCceeeccCcccHHHHH
Q psy12159 40 EGRIYANPYNFGRHTNWRLFLGLFHGRSFLSRGETSIEALI 80 (162)
Q Consensus 40 ~~~~f~NPYdlG~~~Nw~~~~g~~~g~~~i~~g~ttIE~l~ 80 (162)
......+|+++ +.+|+++||... ..-+--||.+.+.+.
T Consensus 8 ~~~~~~~p~~~--~~~w~~~F~~~~-PlvLeIGcG~G~~~~ 45 (204)
T d2fcaa1 8 ADIAISNPADY--KGKWNTVFGNDN-PIHIEVGTGKGQFIS 45 (204)
T ss_dssp TTTBCSCGGGG--TTCHHHHHTSCC-CEEEEECCTTSHHHH
T ss_pred ccchhcCHHHH--HhHHHHHcCCCC-ceEEEEEecCcHHHH
Confidence 33456788876 778999998753 334666776666554
No 5
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.38 E-value=42 Score=20.07 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=13.5
Q ss_pred CceeeccCcccHHHHHh
Q psy12159 65 GRSFLSRGETSIEALIN 81 (162)
Q Consensus 65 g~~~i~~g~ttIE~l~N 81 (162)
-+.|+.+|..|||.+++
T Consensus 21 A~~l~~~Gi~ti~dLr~ 37 (57)
T d2bcqa2 21 AQMWYQQGFRSLEDIRS 37 (57)
T ss_dssp HHHHHHTTCCSHHHHHH
T ss_pred HHHHHHhCCCCHHHHHh
Confidence 34567889999999975
No 6
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=8.21 E-value=90 Score=21.71 Aligned_cols=27 Identities=22% Similarity=0.107 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhhcCCcceehhhc
Q psy12159 4 FVALGLLSIYHAKMISRGETSIEALIN 30 (162)
Q Consensus 4 ~lalg~L~~whi~LI~rNeTtIE~~~~ 30 (162)
++++.+++..|+|+...++-++++...
T Consensus 158 ~~l~~~~vi~Hvy~a~~~~~~l~~M~t 184 (216)
T d1kqfc_ 158 GIILIHAILIHMYMAFWVKGSIKGMIE 184 (216)
T ss_dssp HHHHHHHHHHHHHHHHHBTTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccccccchhhe
Confidence 455667788899999988877877653
No 7
>d1kqha_ g.3.6.2 (A:) ACTX-HI:OB4219 {Funnel-web spider (Hadronyche infensa) [TaxId: 153481]}
Probab=8.20 E-value=46 Score=18.20 Aligned_cols=10 Identities=50% Similarity=1.072 Sum_probs=7.4
Q ss_pred ceeeeeeeee
Q psy12159 151 THFTWPVSCR 160 (162)
Q Consensus 151 ~~~~~~~~~~ 160 (162)
--|..|-|||
T Consensus 25 ciffypcscr 34 (38)
T d1kqha_ 25 CIFFYPCSCR 34 (38)
T ss_dssp CCSSSSEEEE
T ss_pred EEEEeecccc
Confidence 3577888887
No 8
>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.01 E-value=54 Score=20.43 Aligned_cols=9 Identities=44% Similarity=1.589 Sum_probs=6.2
Q ss_pred eeeeeeeeecC
Q psy12159 152 HFTWPVSCRCG 162 (162)
Q Consensus 152 ~~~~~~~~~~~ 162 (162)
.|+.| ||||
T Consensus 21 ~~~yp--CpCG 29 (70)
T d1wgea1 21 TYFYP--CPCG 29 (70)
T ss_dssp EEEEC--CSSS
T ss_pred EEEeC--CCCC
Confidence 45555 9997
No 9
>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}
Probab=7.84 E-value=2.3e+02 Score=19.69 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=27.3
Q ss_pred cCCcccCccchhhhhhHHhhhhccCCceeeccCcccHHHHH
Q psy12159 40 EGRIYANPYNFGRHTNWRLFLGLFHGRSFLSRGETSIEALI 80 (162)
Q Consensus 40 ~~~~f~NPYdlG~~~Nw~~~~g~~~g~~~i~~g~ttIE~l~ 80 (162)
....|..|.-+..+.+|+++||.... .-+--||.+.+.+.
T Consensus 8 ~~p~~~~~~p~~~~~~w~~~f~~~~p-lvLdIGcG~G~~~~ 47 (204)
T d1yzha1 8 ANPQYVVLNPLEAKAKWRDLFGNDNP-IHVEVGSGKGAFVS 47 (204)
T ss_dssp TCTTTEECCGGGTTTTHHHHHTSCCC-EEEEESCTTSHHHH
T ss_pred hCcceEecChHHhhccHHHHcCCCCC-eEEEEeccCCHHHH
Confidence 34457777777888999999987533 33566776666554
No 10
>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.01 E-value=64 Score=20.66 Aligned_cols=9 Identities=67% Similarity=1.796 Sum_probs=6.6
Q ss_pred eeeeeeeeecC
Q psy12159 152 HFTWPVSCRCG 162 (162)
Q Consensus 152 ~~~~~~~~~~~ 162 (162)
.|+.| ||||
T Consensus 20 ~~~yp--CrCG 28 (82)
T d1ywsa1 20 MFTYP--CPCG 28 (82)
T ss_dssp EEEEC--CSSS
T ss_pred EEEec--cccC
Confidence 46665 9998
Done!