RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12159
(162 letters)
>gnl|CDD|236991 PRK11815, PRK11815, tRNA-dihydrouridine synthase A; Provisional.
Length = 333
Score = 29.7 bits (68), Expect = 0.54
Identities = 31/99 (31%), Positives = 37/99 (37%), Gaps = 21/99 (21%)
Query: 41 GR-IYANPYNFGRHTNW-RLFLGLFHGRSFLSRGETSIEALINKLEAKKADSEGRIYANP 98
GR Y NPY R G LSR E +EA++ +E A GR+
Sbjct: 233 GRAAYHNPYLLAE---VDRELFGE--PAPPLSRSEV-LEAMLPYIERHLA-QGGRLNH-- 283
Query: 99 YNFGRHTNWRLFLGLFHGRS---FWRHVLLPSGHKPLGD 134
RH LGLF G WR L + HKP
Sbjct: 284 --ITRHM-----LGLFQGLPGARAWRRYLSENAHKPGAG 315
>gnl|CDD|179280 PRK01322, PRK01322, 6-carboxyhexanoate--CoA ligase; Provisional.
Length = 242
Score = 28.3 bits (64), Expect = 1.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 65 GRSFLSRGETSIEALINKLEAK 86
GR F +E LI+ LE K
Sbjct: 213 GRIFFVDDSIDLEELISYLENK 234
>gnl|CDD|217162 pfam02645, DegV, Uncharacterized protein, DegV family COG1307.
The structure of this protein revealed a bound
fatty-acid molecule in a pocket between the two protein
domains. The structure indicates that this family has
the molecular function of fatty-acid binding and may
play a role in the cellular functions of fatty acid
transport or metabolism.
Length = 211
Score = 28.0 bits (63), Expect = 1.9
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 2 SVFVALGLLSIYHAKMISRGETSIEALINKLEAKKADSEGRIY 44
SV + LGLL + A++ G+ S E ++ KLE + ++
Sbjct: 48 SVSMGLGLLVLEAARLAKAGK-SFEEILKKLEEIRERTKAYFT 89
>gnl|CDD|236317 PRK08638, PRK08638, threonine dehydratase; Validated.
Length = 333
Score = 27.8 bits (62), Expect = 2.7
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 13 YHAKMISRGETSIEALINKLEAKKADSEGRIYANPYN 49
Y A+++ G+ + I K+E + + EGR + PY+
Sbjct: 120 YGAEVVLHGDNFNDT-IAKVE-EIVEEEGRTFIPPYD 154
>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. This
model represents a group of paralogous families in
plasmodium species alternately annotated as reticulocyte
binding protein, 235-kDa family protein and rhoptry
protein. Rhoptry protein is localized on the cell
surface and is extremely large (although apparently
lacking in repeat structure) and is important for the
process of invasion of the RBCs by the parasite. These
proteins are found in P. falciparum, P. vivax and P.
yoelii.
Length = 2757
Score = 28.1 bits (62), Expect = 3.0
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 14 HAKMISRGETSIEALINKLEAKKADSEGRIYANPYN 49
+ I L NK++A+ +D + Y +N
Sbjct: 858 CKEKIDSEHEQFAELTNKIKAEISDDKLNDYEKKFN 893
>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase. This family
includes the well known DHHC zinc binding domain as well
as three of the four conserved transmembrane regions
found in this family of palmitoyltransferase enzymes.
Length = 167
Score = 26.7 bits (59), Expect = 4.8
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 3 VFVALGLLSIYHAKMISRGETSIEALINK 31
+ L L +H +I + T+ E + K
Sbjct: 139 FLLFLSFLLFFHLYLILKNITTYEYIKKK 167
>gnl|CDD|129495 TIGR00400, mgtE, Mg2+ transporter (mgtE). This family of
prokaryotic proteins models a class of Mg++ transporter
first described in Bacillus firmus. May form a homodimer
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 449
Score = 27.1 bits (60), Expect = 5.0
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 66 RSFLSRGETSIEALINKLEAKKADSEGRIYANPY 99
+ L+ IN L + DS GRI Y
Sbjct: 108 QQLLASSTEEERKAINLLLSYSDDSAGRIMTIEY 141
>gnl|CDD|213558 TIGR00762, DegV, EDD domain protein, DegV family. This family of
proteins is related to DegV of Bacillus subtilis and
includes paralogous sets in several species (B.
subtilis, Deinococcus radiodurans, Mycoplasma
pneumoniae) that are closer in percent identity to each
than to most homologs from other species. This suggests
both recent paralogy and diversity of function. DegV
itself is encoded immediately downstream of DegU, a
transcriptional regulator of degradation, but is itself
uncharacterized. Crystallography suggested a
lipid-binding site, while comparison of the crystal
structure to dihydroxyacetone kinase and to a mannose
transporter EIIA domain suggests a conserved domain,
EDD, with phosphotransferase activity [Unknown function,
General].
Length = 275
Score = 26.3 bits (59), Expect = 8.0
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 6 ALGLLSIYHAKMISRGETSIEALINKLEAKKADSEGRIY 44
LGLL + AK+ G+ S+E ++ KLE + ++
Sbjct: 120 GLGLLVLEAAKLAEEGK-SLEEIVAKLEELRERTKLYFV 157
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.449
Gapped
Lambda K H
0.267 0.0611 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,391,965
Number of extensions: 752011
Number of successful extensions: 781
Number of sequences better than 10.0: 1
Number of HSP's gapped: 781
Number of HSP's successfully gapped: 22
Length of query: 162
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 73
Effective length of database: 6,990,096
Effective search space: 510277008
Effective search space used: 510277008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)