RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12159
         (162 letters)



>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding
           protein; HET: PLM; 2.50A {Bacillus subtilis}
          Length = 315

 Score = 29.6 bits (67), Expect = 0.43
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 5   VALGLLSIYHAKMISRGETSIEALINKLEAKKADSEGRIY 44
           +A G  ++  A++I  G +S E +I +LE  K        
Sbjct: 155 LAQGFYALKAAELIKNGASSPEDIIKELEEMKKTVRAYFM 194


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.8 bits (63), Expect = 0.56
 Identities = 5/17 (29%), Positives = 8/17 (47%), Gaps = 1/17 (5%)

Query: 31 KLEAKKADSEGRIYANP 47
          K   KK  +  ++YA  
Sbjct: 19 KQALKKLQASLKLYA-D 34



 Score = 28.8 bits (63), Expect = 0.56
 Identities = 5/17 (29%), Positives = 8/17 (47%), Gaps = 1/17 (5%)

Query: 82 KLEAKKADSEGRIYANP 98
          K   KK  +  ++YA  
Sbjct: 19 KQALKKLQASLKLYA-D 34


>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN;
           1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
          Length = 350

 Score = 28.7 bits (65), Expect = 0.77
 Identities = 23/103 (22%), Positives = 31/103 (30%), Gaps = 30/103 (29%)

Query: 41  GR-IYANPYNFGRHTNWRLFLG-----LFHGRSFLSRGETSIEALINKLEAKKADSEGRI 94
           GR +Y +P+           L      +F      SR E     +   LE +        
Sbjct: 225 GRAVYEDPF----------VLEEADRRVFGLPRRPSRLEV-ARRMRAYLEEEVLK----- 268

Query: 95  YANPYNFGRHTNWRLFLGLFHGRS---FWRHVLLPSGHKPLGD 134
              P+   RH      L LF GR     WR +L         D
Sbjct: 269 GTPPWAVLRHM-----LNLFRGRPKGRLWRRLLSEGRSLQALD 306


>1mgp_A Hypothetical protein TM841; two domain structure with mixed
           alpha/beta structures in BOTH domains, structural
           genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP:
           c.119.1.1 PDB: 1vpv_A*
          Length = 313

 Score = 28.4 bits (64), Expect = 0.95
 Identities = 8/40 (20%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 5   VALGLLSIYHAKMISRGETSIEALINKLEAKKADSEGRIY 44
            A+ L +    +M+  G  +IE ++ KL+ +  + + +  
Sbjct: 148 GAIPLPARVAREMLENGA-TIEEVLKKLDERMKNKDFKAI 186


>1pzx_A Hypothetical protein APC36103; structural genomics, two domains
           containing mixed alpha/beta structures, PSI; HET: PLM;
           2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
          Length = 289

 Score = 26.4 bits (59), Expect = 4.6
 Identities = 5/36 (13%), Positives = 12/36 (33%), Gaps = 1/36 (2%)

Query: 5   VALGLLSIYHAKMISRGETSIEALINKLEAKKADSE 40
           +  GL  +   ++  +       L   +E+     E
Sbjct: 126 LGQGLAVMKAVELAKQNT-PYNLLCETIESYCRHME 160


>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein,
           structural genomics, PSI- protein structure initiative;
           HET: STE; 1.90A {Eubacterium ventriosum}
          Length = 297

 Score = 26.5 bits (59), Expect = 5.0
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 5   VALGLLSIYHAKMISRGETSIEALINKLEAKKADSE 40
           V   LL     +M+  G  S E  ++KL+A  A + 
Sbjct: 129 VTQALLIDQFVRMLEDGL-SFEQAMSKLDALMASAR 163


>2dt8_A DEGV family protein; fatty acid binding, structural genomics,
           NPPSFA, natio project on protein structural and
           functional analyses; HET: PLM; 1.48A {Thermus
           thermophilus}
          Length = 280

 Score = 26.0 bits (58), Expect = 6.2
 Identities = 9/40 (22%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 5   VALGLLSIYHAKMISRGETSIEALINKLEAKKADSEGRIY 44
           + +G++ +   +++  G+ S+EA++ +LE  + D   R  
Sbjct: 120 LGVGMMVLRAKELLEEGQ-SLEAVLAELERLRRDHFVRFS 158


>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
           cell inner membrane, cell ME GTP-binding, ION transport,
           membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
           3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
          Length = 274

 Score = 25.8 bits (57), Expect = 7.6
 Identities = 9/80 (11%), Positives = 24/80 (30%), Gaps = 10/80 (12%)

Query: 22  ETSIEALINKLEAKKADSEGRIYANPYNFGRHTNWRLFLGLFHGRSFLSRGETSIEALIN 81
               ++L   + +     + R              ++  G  + R++       ++A + 
Sbjct: 182 LNEADSLAKVMPSDIPLKQRRWLGL----------QMLEGDIYSRAYAGEASQHLDAALA 231

Query: 82  KLEAKKADSEGRIYANPYNF 101
           +L  +  D    I    Y  
Sbjct: 232 RLRNEMDDPALHIADARYQC 251


>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding
           protein, lipid binding protein; HET: PLM; 2.04A
           {Streptococcus mutans}
          Length = 320

 Score = 25.7 bits (57), Expect = 8.0
 Identities = 5/40 (12%), Positives = 12/40 (30%), Gaps = 1/40 (2%)

Query: 5   VALGLLSIYHAKMISRGETSIEALINKLEAKKADSEGRIY 44
              G L++  A+    G+ S++     +            
Sbjct: 160 GGEGYLAMLAAQAREEGK-SLKETKELILDVGPRLRTFFL 198


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.139    0.449 

Gapped
Lambda     K      H
   0.267   0.0604    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,543,722
Number of extensions: 142100
Number of successful extensions: 304
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 14
Length of query: 162
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,300,587
Effective search space: 326844612
Effective search space used: 326844612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)