RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12159
         (162 letters)



>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli
          [TaxId: 562]}
          Length = 91

 Score = 25.9 bits (57), Expect = 1.2
 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 3  VFVALGLLSIYHAKMISRGETSIEALINKLEAKKA 37
          VF  L   +I    +I+  E S+   ++   +   
Sbjct: 34 VFGILARHNI-SVDLITTSEVSVALTLDTTGSTST 67


>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
          transferase subunit alpha, AccA {Escherichia coli
          [TaxId: 562]}
          Length = 316

 Score = 24.3 bits (52), Expect = 8.8
 Identities = 5/32 (15%), Positives = 18/32 (56%)

Query: 15 AKMISRGETSIEALINKLEAKKADSEGRIYAN 46
          ++   + + +I+  +++L  K  +   +I+A+
Sbjct: 23 SRQDEKLDINIDEEVHRLREKSVELTRKIFAD 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.449 

Gapped
Lambda     K      H
   0.267   0.0595    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 628,651
Number of extensions: 27255
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 6
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.9 bits)