BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1216
(628 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GOJ|C Chain C, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|D Chain D, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOK|G Chain G, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|C Chain C, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 240
Score = 238 bits (606), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 116/211 (54%), Positives = 146/211 (69%), Gaps = 26/211 (12%)
Query: 417 LLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTAS 476
L RK I PEDVL L IT +YLCSP+ NIY+I+F+RFKIRD+DS TVLFEI KP +
Sbjct: 54 LQRKQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSER 113
Query: 477 TPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATIT 536
P N DPN GRFVRYQFTP FL L+ +GAT+
Sbjct: 114 LP-------------------------INRRDLDPNAGRFVRYQFTPAFLRLRQVGATVE 148
Query: 537 FSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEM 596
F++GD +NNFRMIE+HYF + + LK+FDF+FG+CIP+S NTCEHIY FP LS+ L EM
Sbjct: 149 FTVGDKPVNNFRMIERHYFRNQL-LKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEM 207
Query: 597 IDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
I +P+ T+SDSFYF++++L MHNKA+YSY+G
Sbjct: 208 IRHPYETQSDSFYFVDDRLVMHNKADYSYSG 238
>pdb|3RBQ|A Chain A, Co-Crystal Structure Of Human Unc119 (Retina Gene 4) And
An N-Terminal Transducin-Alpha Mimicking Peptide
pdb|3RBQ|B Chain B, Co-Crystal Structure Of Human Unc119 (Retina Gene 4) And
An N-Terminal Transducin-Alpha Mimicking Peptide
pdb|3RBQ|C Chain C, Co-Crystal Structure Of Human Unc119 (Retina Gene 4) And
An N-Terminal Transducin-Alpha Mimicking Peptide
pdb|3RBQ|D Chain D, Co-Crystal Structure Of Human Unc119 (Retina Gene 4) And
An N-Terminal Transducin-Alpha Mimicking Peptide
pdb|3RBQ|E Chain E, Co-Crystal Structure Of Human Unc119 (Retina Gene 4) And
An N-Terminal Transducin-Alpha Mimicking Peptide
pdb|3RBQ|F Chain F, Co-Crystal Structure Of Human Unc119 (Retina Gene 4) And
An N-Terminal Transducin-Alpha Mimicking Peptide
Length = 195
Score = 235 bits (599), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 115/209 (55%), Positives = 145/209 (69%), Gaps = 26/209 (12%)
Query: 419 RKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTP 478
RK I PEDVL L IT +YLCSP+ NIY+I+F+RFKIRD+DS TVLFEI KP + P
Sbjct: 11 RKQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLP 70
Query: 479 SSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFS 538
N DPN GRFVRYQFTP FL L+ +GAT+ F+
Sbjct: 71 -------------------------INRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFT 105
Query: 539 IGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMID 598
+GD +NNFRMIE+HYF + + LK+FDF+FG+CIP+S NTCEHIY FP LS+ L EMI
Sbjct: 106 VGDKPVNNFRMIERHYFRNQL-LKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIR 164
Query: 599 NPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
+P+ T+SDSFYF++++L MHNKA+YSY+G
Sbjct: 165 HPYETQSDSFYFVDDRLVMHNKADYSYSG 193
>pdb|3GQQ|A Chain A, Crystal Structure Of The Human Retinal Protein 4 (Unc-119
Homolog A). Northeast Structural Genomics Consortium
Target Hr3066a
pdb|3GQQ|B Chain B, Crystal Structure Of The Human Retinal Protein 4 (Unc-119
Homolog A). Northeast Structural Genomics Consortium
Target Hr3066a
pdb|3GQQ|C Chain C, Crystal Structure Of The Human Retinal Protein 4 (Unc-119
Homolog A). Northeast Structural Genomics Consortium
Target Hr3066a
pdb|3GQQ|D Chain D, Crystal Structure Of The Human Retinal Protein 4 (Unc-119
Homolog A). Northeast Structural Genomics Consortium
Target Hr3066a
pdb|3GQQ|E Chain E, Crystal Structure Of The Human Retinal Protein 4 (Unc-119
Homolog A). Northeast Structural Genomics Consortium
Target Hr3066a
pdb|3GQQ|F Chain F, Crystal Structure Of The Human Retinal Protein 4 (Unc-119
Homolog A). Northeast Structural Genomics Consortium
Target Hr3066a
Length = 195
Score = 225 bits (574), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 112/209 (53%), Positives = 141/209 (67%), Gaps = 26/209 (12%)
Query: 419 RKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTP 478
RK I PEDVL L IT +YLCSP+ NIY+I+F+RFKIRD DS TVLFEI KP + P
Sbjct: 11 RKQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDXDSGTVLFEIKKPPVSERLP 70
Query: 479 SSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFS 538
N DPN GRFVRYQFTP FL L+ +GAT+ F+
Sbjct: 71 -------------------------INRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFT 105
Query: 539 IGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMID 598
+GD +NNFR IE+HYF + + LK+FDF+FG+CIP+S NTCEHIY FP LS+ L E I
Sbjct: 106 VGDKPVNNFRXIERHYFRNQL-LKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEXIR 164
Query: 599 NPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
+P+ T+SDSFYF++++L HNKA+YSY+G
Sbjct: 165 HPYETQSDSFYFVDDRLVXHNKADYSYSG 193
>pdb|1KSH|B Chain B, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 152
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 524 KFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHI 582
K L K + + FS + ++ FR+ +K YF L+ + F FG+ IPNS NT + +
Sbjct: 54 KILKCKAVSRELNFSSTE-QMEKFRLEQKVYFKGQ-XLEEWFFEFGFVIPNSTNTWQSL 110
>pdb|1KSG|B Chain B, Complex Of Arl2 And Pde Delta, Crystal Form 1
pdb|3T5G|B Chain B, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
pdb|3T5I|B Chain B, Structure Of Fully Modified Farnesylated Rheb Peptide In
Complex With Pde6d
pdb|3T5I|A Chain A, Structure Of Fully Modified Farnesylated Rheb Peptide In
Complex With Pde6d
pdb|3T5I|C Chain C, Structure Of Fully Modified Farnesylated Rheb Peptide In
Complex With Pde6d
pdb|3T5I|D Chain D, Structure Of Fully Modified Farnesylated Rheb Peptide In
Complex With Pde6d
Length = 152
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 524 KFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHI 582
K L K + + FS + ++ FR+ +K YF L+ + F FG+ IPNS NT + +
Sbjct: 54 KILKCKAVSRELNFSSTE-QMEKFRLEQKVYFKGQC-LEEWFFEFGFVIPNSTNTWQSL 110
>pdb|1KSJ|B Chain B, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 152
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 524 KFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHI 582
K L K + + FS + + FR+ +K YF L+ + F FG+ IPNS NT + +
Sbjct: 54 KILKCKAVSRELNFSSTE-QXEKFRLEQKVYFKGQ-XLEEWFFEFGFVIPNSTNTWQSL 110
>pdb|1JII|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-219383
pdb|1JIJ|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-239629
pdb|1JIK|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-243545
pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb284485
Length = 420
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Query: 17 RKLWKELKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYT 76
R+L +++VG + + + L R+ D IP+ T + ++
Sbjct: 183 RELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWL 242
Query: 77 ETEKQRPVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEE 132
+ EK P Y+ +N DE + Y +E + + + +P RE+ K + EE
Sbjct: 243 DAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEE 302
Query: 133 IDDQIH 138
+ IH
Sbjct: 303 VTKFIH 308
>pdb|3TON|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TON|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TOP|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3TOP|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
Length = 908
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 443 DANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTP 482
D ++ E L+FKI D + N +E+ P N S PSSTP
Sbjct: 90 DVTYHKNEMLQFKIYDPNKNR--YEVPVPLNIPSMPSSTP 127
>pdb|2GLX|A Chain A, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|B Chain B, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|C Chain C, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|D Chain D, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|E Chain E, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|F Chain F, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
Length = 332
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 76 TETEKQRPVSKYKELVNDPDEQTVYSKTQSEERKSKSLTT 115
TE + V+ +ELV DPD VY T +E + ++L
Sbjct: 43 TENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQTLAA 82
>pdb|4TS1|A Chain A, Crystal Structure Of A Deletion Mutant Of A Tyrosyl-TRNA
Synthetase Complexed With Tyrosine
pdb|4TS1|B Chain B, Crystal Structure Of A Deletion Mutant Of A Tyrosyl-TRNA
Synthetase Complexed With Tyrosine
Length = 319
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 4/120 (3%)
Query: 23 LKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYTETEKQR 82
L++G + + L RK IP+ T T I+ + EK
Sbjct: 188 LQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTIWLDKEKTS 247
Query: 83 PVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEEIDDQIH 138
P Y+ +N D + Y S+E +PE+R + K + EE+ +H
Sbjct: 248 PYEFYQFWINTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEKRAAQKTLAEEVTKLVH 307
>pdb|1TYB|E Chain E, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 4/120 (3%)
Query: 23 LKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYTETEKQR 82
L++G + + L RK IP+ T T I+ + EK
Sbjct: 188 LQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTIWLDKEKTS 247
Query: 83 PVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEEIDDQIH 138
P Y+ +N D + Y S+E +PE+R + K + EE+ +H
Sbjct: 248 PYEFYQFWINTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEKRAAQKTLAEEVTKLVH 307
>pdb|1TYC|A Chain A, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 4/120 (3%)
Query: 23 LKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYTETEKQR 82
L++G + + L RK IP+ T T I+ + EK
Sbjct: 188 LQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTIWLDKEKTS 247
Query: 83 PVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEEIDDQIH 138
P Y+ +N D + Y S+E +PE+R + K + EE+ +H
Sbjct: 248 PYEFYQFWINTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEKRAAQKTLAEEVTKLVH 307
>pdb|1TYA|E Chain E, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 4/120 (3%)
Query: 23 LKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYTETEKQR 82
L++G + + L RK IP+ T T I+ + EK
Sbjct: 188 LQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTIWLDKEKTS 247
Query: 83 PVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEEIDDQIH 138
P Y+ +N D + Y S+E +PE+R + K + EE+ +H
Sbjct: 248 PYEFYQFWINTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEKRAAQKTLAEEVTKLVH 307
>pdb|1TYD|E Chain E, Structure Of Tyrosyl-Trna Synthetase Refined At 2.3
Angstroms Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
Length = 319
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 4/120 (3%)
Query: 23 LKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYTETEKQR 82
L++G + + L RK IP+ T T I+ + EK
Sbjct: 188 LQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTIWLDKEKTS 247
Query: 83 PVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEEIDDQIH 138
P Y+ +N D + Y S+E +PE+R + K + EE+ +H
Sbjct: 248 PYEFYQFWINTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEKRAAQKTLAEEVTKLVH 307
>pdb|2TS1|A Chain A, Structure Of Tyrosyl-TRNA SYNTHETASE REFINED AT 2.3
ANGSTROMS Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
pdb|3TS1|A Chain A, Structure Of Tyrosyl-t/rna Synthetase Refined At 2.3
Angstroms Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
Length = 419
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 4/120 (3%)
Query: 23 LKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYTETEKQR 82
L++G + + L RK IP+ T T I+ + EK
Sbjct: 188 LQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTIWLDKEKTS 247
Query: 83 PVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEEIDDQIH 138
P Y+ +N D + Y S+E +PE+R + K + EE+ +H
Sbjct: 248 PYEFYQFWINTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEKRAAQKTLAEEVTKLVH 307
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,191,651
Number of Sequences: 62578
Number of extensions: 745743
Number of successful extensions: 1637
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1626
Number of HSP's gapped (non-prelim): 19
length of query: 628
length of database: 14,973,337
effective HSP length: 105
effective length of query: 523
effective length of database: 8,402,647
effective search space: 4394584381
effective search space used: 4394584381
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)