BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1216
(628 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8C4B4|U119B_MOUSE Protein unc-119 homolog B OS=Mus musculus GN=Unc119b PE=2 SV=1
Length = 251
Score = 245 bits (626), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 115/225 (51%), Positives = 152/225 (67%), Gaps = 23/225 (10%)
Query: 403 SPSSKEASPVTEEELLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSN 462
+P + VTE+ELL I PE VL LN +TENYLC P+ N+Y I+F RFKIRD+++
Sbjct: 48 TPDDGSGAAVTEQELLALDTIRPEHVLRLNRVTENYLCKPEDNVYSIDFTRFKIRDLETG 107
Query: 463 TVLFEIAKPANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFT 522
TVLFEIAKP + D + ++ D + GRFVRYQFT
Sbjct: 108 TVLFEIAKPCIS----------------------DQDQDAEEESVDVDISVGRFVRYQFT 145
Query: 523 PKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHI 582
P FL L+ +GAT+ F++GD + FRMIE+HYF + + LKTFDF+FG+CIP+S NTCEHI
Sbjct: 146 PAFLRLRTVGATVEFTVGDRPVTGFRMIERHYFRERL-LKTFDFDFGFCIPSSRNTCEHI 204
Query: 583 YVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
Y FP LS+ + + MI+NP+ T+SDSFYF++NKL MHNKA+Y+YNG
Sbjct: 205 YEFPQLSEDVIRLMIENPYETRSDSFYFVDNKLVMHNKADYAYNG 249
>sp|O19177|U119A_CANFA Protein unc-119 homolog A OS=Canis familiaris GN=UNC119 PE=2 SV=2
Length = 240
Score = 239 bits (609), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 116/211 (54%), Positives = 146/211 (69%), Gaps = 26/211 (12%)
Query: 417 LLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTAS 476
L RK I PEDVL L IT +YLCSP+ NIY+I+F+RFKIRD+DS TVLFEI KP +
Sbjct: 54 LQRKQRIGPEDVLGLQRITGDYLCSPEENIYKIDFIRFKIRDMDSGTVLFEIKKPPASER 113
Query: 477 TPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATIT 536
P N DPN GRFVRYQFTP FL L+ +GAT+
Sbjct: 114 LP-------------------------INRRDLDPNAGRFVRYQFTPAFLRLRQVGATVE 148
Query: 537 FSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEM 596
F++GD +NNFRMIE+HYF + + LK+FDF+FG+CIP+S NTCEHIY FP LS+ L EM
Sbjct: 149 FTVGDKPVNNFRMIERHYFRNQL-LKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELINEM 207
Query: 597 IDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
I +P+ T+SDSFYF++++L MHNKA+YSY+G
Sbjct: 208 IRHPYETQSDSFYFVDDRLVMHNKADYSYSG 238
>sp|Q66JA9|U19BA_XENLA Protein unc-119 homolog B-A OS=Xenopus laevis GN=unc119b-a PE=2
SV=1
Length = 242
Score = 238 bits (607), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 114/219 (52%), Positives = 148/219 (67%), Gaps = 25/219 (11%)
Query: 409 ASPVTEEELLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEI 468
+P EEELL + PE VL L+ +TENYLC P+ NIY I+F RFKIRD+++ TVLFEI
Sbjct: 47 VTPFREEELLGLNQLRPEHVLGLSRVTENYLCKPEDNIYGIDFTRFKIRDLETGTVLFEI 106
Query: 469 AKPANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNL 528
+KP + ST D A GRFVRYQFTP FL L
Sbjct: 107 SKPCSEQEEEEEE---------------STHLDASA---------GRFVRYQFTPAFLRL 142
Query: 529 KNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNL 588
+ +GAT+ F++GD + +FRMIE+HYF D + LK+FDF+FG+CIPNS NTCEH+Y FP L
Sbjct: 143 RKVGATVEFTVGDKPVKSFRMIERHYFRDHI-LKSFDFDFGFCIPNSRNTCEHMYEFPQL 201
Query: 589 SKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
S+ L ++M +NP+ T+SDSFYF++NKL MHNKA+Y+YNG
Sbjct: 202 SEELIRQMTENPYETRSDSFYFVDNKLIMHNKADYAYNG 240
>sp|Q13432|U119A_HUMAN Protein unc-119 homolog A OS=Homo sapiens GN=UNC119 PE=1 SV=1
Length = 240
Score = 238 bits (606), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 116/211 (54%), Positives = 146/211 (69%), Gaps = 26/211 (12%)
Query: 417 LLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTAS 476
L RK I PEDVL L IT +YLCSP+ NIY+I+F+RFKIRD+DS TVLFEI KP +
Sbjct: 54 LQRKQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSER 113
Query: 477 TPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATIT 536
P N DPN GRFVRYQFTP FL L+ +GAT+
Sbjct: 114 LP-------------------------INRRDLDPNAGRFVRYQFTPAFLRLRQVGATVE 148
Query: 537 FSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEM 596
F++GD +NNFRMIE+HYF + + LK+FDF+FG+CIP+S NTCEHIY FP LS+ L EM
Sbjct: 149 FTVGDKPVNNFRMIERHYFRNQL-LKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEM 207
Query: 597 IDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
I +P+ T+SDSFYF++++L MHNKA+YSY+G
Sbjct: 208 IRHPYETQSDSFYFVDDRLVMHNKADYSYSG 238
>sp|Q3SYR2|U119A_BOVIN Protein unc-119 homolog A OS=Bos taurus GN=UNC119 PE=1 SV=1
Length = 240
Score = 238 bits (606), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 116/211 (54%), Positives = 146/211 (69%), Gaps = 26/211 (12%)
Query: 417 LLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTAS 476
L RK I PEDVL L IT +YLCSP+ NIY+I+F+RFKIRD+DS TVLFEI KP +
Sbjct: 54 LQRKQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPASER 113
Query: 477 TPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATIT 536
P N DPN GRFVRYQFTP FL L+ +GAT+
Sbjct: 114 LP-------------------------INPRDLDPNAGRFVRYQFTPAFLRLRQVGATVE 148
Query: 537 FSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEM 596
F++GD +NNFRMIE+HYF + + LK+FDF+FG+CIP+S NTCEHIY FP LS+ L EM
Sbjct: 149 FTVGDKPVNNFRMIERHYFRNQL-LKSFDFHFGFCIPSSKNTCEHIYDFPALSEELINEM 207
Query: 597 IDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
I +P+ T+SDSFYF++++L MHNKA+YSY+G
Sbjct: 208 IRHPYETQSDSFYFVDDRLVMHNKADYSYSG 238
>sp|Q9Z2R6|U119A_MOUSE Protein unc-119 homolog A OS=Mus musculus GN=Unc119 PE=1 SV=1
Length = 240
Score = 237 bits (605), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 113/205 (55%), Positives = 143/205 (69%), Gaps = 26/205 (12%)
Query: 423 ITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTP 482
I PEDVL L IT +YLCSP+ NIY+I+F+RFKIRD+DS TVLFEI KP + P
Sbjct: 60 IGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLP---- 115
Query: 483 GNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDF 542
N DPN GRFVRYQFTP FL L+ +GAT+ F++GD
Sbjct: 116 ---------------------INRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDK 154
Query: 543 EINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFH 602
+NNFRMIE+HYF + + LK+FDF+FG+CIP+S NTCEHIY FP LS+ L EMI +P+
Sbjct: 155 PVNNFRMIERHYFRNQL-LKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPYE 213
Query: 603 TKSDSFYFINNKLFMHNKAEYSYNG 627
T+SDSFYF++++L MHNKA+YSY+G
Sbjct: 214 TQSDSFYFVDDRLVMHNKADYSYSG 238
>sp|Q62885|U119A_RAT Protein unc-119 homolog A OS=Rattus norvegicus GN=Unc119 PE=1 SV=1
Length = 240
Score = 237 bits (605), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 113/205 (55%), Positives = 143/205 (69%), Gaps = 26/205 (12%)
Query: 423 ITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTP 482
I PEDVL L IT +YLCSP+ NIY+I+F+RFKIRD+DS TVLFEI KP + P
Sbjct: 60 IGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLP---- 115
Query: 483 GNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDF 542
N DPN GRFVRYQFTP FL L+ +GAT+ F++GD
Sbjct: 116 ---------------------INRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDK 154
Query: 543 EINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFH 602
+NNFRMIE+HYF + + LK+FDF+FG+CIP+S NTCEHIY FP LS+ L EMI +P+
Sbjct: 155 PVNNFRMIERHYFRNQL-LKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPYE 213
Query: 603 TKSDSFYFINNKLFMHNKAEYSYNG 627
T+SDSFYF++++L MHNKA+YSY+G
Sbjct: 214 TQSDSFYFVDDRLVMHNKADYSYSG 238
>sp|A6NIH7|U119B_HUMAN Protein unc-119 homolog B OS=Homo sapiens GN=UNC119B PE=1 SV=1
Length = 251
Score = 234 bits (596), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/219 (52%), Positives = 149/219 (68%), Gaps = 23/219 (10%)
Query: 409 ASPVTEEELLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEI 468
+ VTE+ELL I PE VL L+ +TENYLC P+ NIY I+F RFKIRD+++ TVLFEI
Sbjct: 54 GAAVTEQELLALDTIRPEHVLRLSRVTENYLCKPEDNIYSIDFTRFKIRDLETGTVLFEI 113
Query: 469 AKPANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNL 528
AKP + D + D + GRFVRYQFTP FL L
Sbjct: 114 AKPCVS----------------------DQEEDEEEGGGDVDISAGRFVRYQFTPAFLRL 151
Query: 529 KNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNL 588
+ +GAT+ F++GD ++NFRMIE+HYF + + LK FDF+FG+CIP+S NTCEHIY FP L
Sbjct: 152 RTVGATVEFTVGDKPVSNFRMIERHYFREHL-LKNFDFDFGFCIPSSRNTCEHIYEFPQL 210
Query: 589 SKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
S+ + + MI+NP+ T+SDSFYF++NKL MHNKA+Y+YNG
Sbjct: 211 SEDVIRLMIENPYETRSDSFYFVDNKLIMHNKADYAYNG 249
>sp|Q9XYQ2|UN119_DROME Protein unc-119 homolog OS=Drosophila melanogaster GN=unc-119 PE=2
SV=1
Length = 265
Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/206 (55%), Positives = 143/206 (69%), Gaps = 13/206 (6%)
Query: 423 ITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTP 482
+TP++VL L IT++YLCS +AN++EI+F RFKIRD++S VLFEIAKP PS
Sbjct: 68 VTPDEVLHLTKITDDYLCSANANVFEIDFTRFKIRDLESGAVLFEIAKP------PSEQY 121
Query: 483 GNNAESPESQ-GDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGD 541
S E+ S D A DPN GR+VRYQFTP FLNLK +GAT+ F++G
Sbjct: 122 PEGLSSDETMLAAAEKLSLDDTA-----DPNAGRYVRYQFTPAFLNLKTVGATVEFTVGS 176
Query: 542 FEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPF 601
+NNFRMIE+H+F D + LKTFDF FG+C P S NT EHIY FPNL L EMI +PF
Sbjct: 177 QPLNNFRMIERHFFRDRL-LKTFDFEFGFCFPFSKNTVEHIYEFPNLPPDLVAEMISSPF 235
Query: 602 HTKSDSFYFINNKLFMHNKAEYSYNG 627
T+SDSFYF+ N+L MHNKA+Y+Y+G
Sbjct: 236 ETRSDSFYFVGNRLVMHNKADYAYDG 261
>sp|Q17297|UN119_CAEBR Protein unc-119 OS=Caenorhabditis briggsae GN=unc-119 PE=3 SV=2
Length = 217
Score = 230 bits (586), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/224 (51%), Positives = 144/224 (64%), Gaps = 30/224 (13%)
Query: 404 PSSKEASPVTEEELLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNT 463
P S E TE EL +K ITP DVL L IT+ +LCSP ANIY IEF +F+IRD+D+
Sbjct: 24 PPSTEQGITTESELAKKAQITPNDVLALPGITQGFLCSPSANIYNIEFTKFQIRDLDTEQ 83
Query: 464 VLFEIAKPANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTP 523
VLFEIAKP N N ESP+ + R+VRY+F P
Sbjct: 84 VLFEIAKPENDQE--------NDESPQE---------------------SARYVRYRFAP 114
Query: 524 KFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIY 583
FL LK +GAT+ F +GD I++FRMIE+H+F D + LK FDF FG+CIPNS N CEHIY
Sbjct: 115 NFLKLKTVGATVEFKVGDIPIHHFRMIERHFFKDRL-LKCFDFEFGFCIPNSRNNCEHIY 173
Query: 584 VFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
FP LS+ L +MI+NP T+SDSFYF++NKL MHNKA+YSY+
Sbjct: 174 EFPQLSQQLMDDMINNPNETRSDSFYFVDNKLVMHNKADYSYDA 217
>sp|Q90Z08|U119B_DANRE Protein unc-119 homolog B OS=Danio rerio GN=unc119b PE=1 SV=2
Length = 243
Score = 230 bits (586), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 148/218 (67%), Gaps = 25/218 (11%)
Query: 411 PVTEEELLRKPY-ITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIA 469
PVTEEEL ITP++VL L + +YLC + NIY I+F RFKIRD+++ TVLFEIA
Sbjct: 48 PVTEEELRALGRDITPDEVLGLRAVARDYLCKLEDNIYNIDFTRFKIRDLETGTVLFEIA 107
Query: 470 KPANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLK 529
KP + + + D N + D + GRFVRYQFTP FL L+
Sbjct: 108 KPPHC-------------DLDEEDDENRDA----------DTSAGRFVRYQFTPAFLKLR 144
Query: 530 NIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLS 589
+GAT+ F++GD + NFRMIE+HYF D + LK+FDF+FG+CIPNS NTCEHIY FP L
Sbjct: 145 TVGATVEFTVGDQPVTNFRMIERHYFQDRL-LKSFDFDFGFCIPNSRNTCEHIYEFPQLP 203
Query: 590 KSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
+ L + MI++P+ T+SDSFYF++NKL MHNKA+Y+YNG
Sbjct: 204 EDLIRLMIEHPYETRSDSFYFVDNKLIMHNKADYAYNG 241
>sp|Q6INE2|U19BB_XENLA Protein unc-119 homolog B-B OS=Xenopus laevis GN=unc119b-b PE=2
SV=1
Length = 241
Score = 224 bits (572), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 106/203 (52%), Positives = 139/203 (68%), Gaps = 26/203 (12%)
Query: 425 PEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTPGN 484
PE VL L+ +T+NYLC P+ NI+ I+F RFKIRD+++ TVLFEI+KP +
Sbjct: 63 PEHVLGLSRVTDNYLCKPEDNIFGIDFTRFKIRDLETGTVLFEISKPCSEQEEEEE---- 118
Query: 485 NAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEI 544
ST D A GRFVRYQFTP FL L+ +GAT+ F++GD +
Sbjct: 119 ------------STHLDASA---------GRFVRYQFTPAFLRLRKVGATVEFTVGDKPV 157
Query: 545 NNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTK 604
+FRMIE+HYF D + LK+FDF+FG+CIPNS NTCEH+Y FP LS+ L + M +NP+ T+
Sbjct: 158 KSFRMIERHYFRDRI-LKSFDFDFGFCIPNSRNTCEHMYEFPQLSEELIRLMTENPYETR 216
Query: 605 SDSFYFINNKLFMHNKAEYSYNG 627
SDSFYF++NKL MHNKA+Y+YNG
Sbjct: 217 SDSFYFVDNKLIMHNKADYAYNG 239
>sp|Q10658|UN119_CAEEL Protein unc-119 OS=Caenorhabditis elegans GN=unc-119 PE=1 SV=1
Length = 219
Score = 224 bits (572), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 113/224 (50%), Positives = 141/224 (62%), Gaps = 29/224 (12%)
Query: 404 PSSKEASPVTEEELLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNT 463
P E + TE ELL K ITP DVL L IT+ +LCSP AN+Y IEF +F+IRD+D+
Sbjct: 25 PPVTEQAITTEAELLAKNQITPNDVLALPGITQGFLCSPSANVYNIEFTKFQIRDLDTEH 84
Query: 464 VLFEIAKPANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTP 523
VLFEIAKP N T + QA + R+VRY+F P
Sbjct: 85 VLFEIAKP-----------------------ENETEENLQAQA-----ESARYVRYRFAP 116
Query: 524 KFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIY 583
FL LK +GAT+ F +GD I +FRMIE+H+F D + LK FDF FG+C+PNS N CEHIY
Sbjct: 117 NFLKLKTVGATVEFKVGDVPITHFRMIERHFFKDRL-LKCFDFEFGFCMPNSRNNCEHIY 175
Query: 584 VFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
FP LS+ L +MI+NP T+SDSFYF+ NKL MHNKA+YSY+
Sbjct: 176 EFPQLSQQLMDDMINNPNETRSDSFYFVENKLVMHNKADYSYDA 219
>sp|Q8T6J5|ABCA2_DICDI ABC transporter A family member 2 OS=Dictyostelium discoideum
GN=abcA2 PE=3 SV=1
Length = 1621
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 21/122 (17%)
Query: 216 IKHGTGDFSEGTNVDPDDVEDVEEIVMENRNVDANFDRRTSRYSSQEFVETR-RVDEKTY 274
+ GT F VD DDV D EE++ E+ D+ Y + FV T+ +D+ +
Sbjct: 141 LSSGTNPFQYNIRVDSDDVMDTEELIKEDDTSDSEV------YVKKRFVATQVAMDQAIF 194
Query: 275 EERKMNLKTMNT---------TSLFQRLVQPRLQMFNN----FCDTMVLVRDWQLVCDSK 321
+N KT+N T L+Q+ +Q R +F + F +++ ++L+ D
Sbjct: 195 SYFGLN-KTLNVKGQRYPDPWTELWQKWIQGRDGIFKDAGSVFITAALMIFGFRLITDLV 253
Query: 322 VK 323
++
Sbjct: 254 IE 255
>sp|Q95142|PDE6D_BOVIN Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase
subunit delta OS=Bos taurus GN=PDE6D PE=1 SV=1
Length = 150
Score = 36.2 bits (82), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 524 KFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHI 582
K L K + + FS + ++ FR+ +K YF L+ + F FG+ IPNS NT + +
Sbjct: 52 KILKCKAVSRELNFSSAE-QMEKFRLEQKVYFKGQC-LEEWFFEFGFVIPNSTNTWQSL 108
>sp|Q9XT54|PDE6D_CANFA Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase
subunit delta OS=Canis familiaris GN=PDE6D PE=2 SV=1
Length = 150
Score = 36.2 bits (82), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 524 KFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHI 582
K L K + + FS + ++ FR+ +K YF L+ + F FG+ IPNS NT + +
Sbjct: 52 KILKCKAVSRELNFSSAE-QMEKFRLEQKVYFKGQC-LEEWFFEFGFVIPNSTNTWQSL 108
>sp|O55057|PDE6D_MOUSE Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase
subunit delta OS=Mus musculus GN=Pde6d PE=1 SV=1
Length = 150
Score = 36.2 bits (82), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 524 KFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHI 582
K L K + + FS + ++ FR+ +K YF L+ + F FG+ IPNS NT + +
Sbjct: 52 KILKCKAVSRELNFSSAE-QMEKFRLEQKVYFKGQC-LEEWFFEFGFVIPNSTNTWQSL 108
>sp|Q815S0|SYY2_BACCR Tyrosine--tRNA ligase 2 OS=Bacillus cereus (strain ATCC 14579 / DSM
31) GN=tyrS2 PE=3 SV=1
Length = 420
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 5/133 (3%)
Query: 22 ELKVGTDCTFSFLCTRQSLERKKTNNVDRI-RTNIPVQTNGRKTPHKAAFDNLIYTETEK 80
+L++G + + + L RK + ++ IP+ T + ++ + EK
Sbjct: 186 QLQIGGSDQWGNITSGLDLIRKLEGHEAKVFGLTIPLLLKSDGTKFGKSAGGAVWLDPEK 245
Query: 81 QRPVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEEIDDQ 136
P Y+ VN D + Y ++ER + T V P +RE+ K + EE+
Sbjct: 246 TTPFEFYQFWVNTDDRDVIKYLKYFTFLTKERIDELATKVEVEPHKREAQKVLAEEMTKF 305
Query: 137 IHKSTGSLHKTKL 149
+H L K+
Sbjct: 306 VHGEEAFLQAEKI 318
>sp|O43924|PDE6D_HUMAN Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase
subunit delta OS=Homo sapiens GN=PDE6D PE=1 SV=1
Length = 150
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 524 KFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHI 582
K L K + + FS + ++ FR+ +K YF L+ + F FG+ IPNS NT + +
Sbjct: 52 KILKCKAVSRELNFSSTE-QMEKFRLEQKVYFKGQC-LEEWFFEFGFVIPNSTNTWQSL 108
>sp|Q88TV5|SYY_LACPL Tyrosine--tRNA ligase OS=Lactobacillus plantarum (strain ATCC
BAA-793 / NCIMB 8826 / WCFS1) GN=tyrS PE=3 SV=1
Length = 418
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 14/123 (11%)
Query: 20 WKELKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYTETE 79
W + GTD + R + N+ IP+ T ++ E
Sbjct: 193 WGNITAGTDL----------IHRLEGNDAKAYGLTIPLLLKADGTKFGKTAGGAVWLNPE 242
Query: 80 KQRPVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEEIDD 135
+ P Y+ +N D V Y S E + T +PE+RE+ + + EE+ +
Sbjct: 243 RTSPYEFYQFWINQDDRDVVKYLKYFTFLSHEEIDRLAETVKTAPEKREAQRRLAEEVTE 302
Query: 136 QIH 138
+H
Sbjct: 303 FVH 305
>sp|Q65G35|SYY1_BACLD Tyrosine--tRNA ligase 1 OS=Bacillus licheniformis (strain DSM 13 /
ATCC 14580) GN=tyrS1 PE=3 SV=2
Length = 421
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 4/121 (3%)
Query: 22 ELKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYTETEKQ 81
+L++G + + + L RK N IP+ T T I+ + EK
Sbjct: 188 KLQIGGSDQWGNITSGLELIRKSEENAKAFGLTIPLVTKADGTKFGKTEGGAIWLDKEKT 247
Query: 82 RPVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEEIDDQI 137
Y+ +N D V Y S+E + +PE+RE+ K + EE+ +
Sbjct: 248 SAYEFYQFWINTDDRDVVKYLKYFTFLSKEEIEDLAEKTETAPEKREAQKRLAEEVTVLV 307
Query: 138 H 138
H
Sbjct: 308 H 308
>sp|Q8CE72|CE042_MOUSE Uncharacterized protein C5orf42 homolog OS=Mus musculus PE=2 SV=4
Length = 3214
Score = 33.9 bits (76), Expect = 3.9, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 384 SRMNAVSNGQNENMTCLDDSPSSKEASPVT---EEELLRKPYITPEDVLCLNHITENYLC 440
S VSN + + DD KEA PV E E YI+ + L L++I E LC
Sbjct: 1501 SDKKKVSNQKENSQRKEDDETPGKEALPVIGVWEFERDDDEYISFLE-LFLSYILERDLC 1559
Query: 441 SPDANIYEIEFLRFKIRDIDSNTVLFEI-----AKPANTASTPSSTPGNN-AESPESQGD 494
S D I + ++R+ + N++LF++ + + T S G+ A +PESQ
Sbjct: 1560 SSDPGIPFLTSFSGRLREHELNSLLFDVHTTLKRRQSKTISENVYRAGSCFAVTPESQEP 1619
Query: 495 RNSTS 499
N +S
Sbjct: 1620 ENLSS 1624
>sp|P12845|MYO2_CAEEL Myosin-2 OS=Caenorhabditis elegans GN=myo-2 PE=2 SV=2
Length = 1947
Score = 33.9 bits (76), Expect = 4.0, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 11/131 (8%)
Query: 63 KTPHKAAFDNLIYTETEKQRPVSKYKELVNDPDEQTVYSKTQSEERKSKSLTTSSVSPEQ 122
+ +A +D L ++ R + EL D + + EE K +V ++
Sbjct: 1152 RADQQAEYDELTEQLEDQARATAAQIELGKKKDAELTKLRRDLEESGLKFGEQLTVLKKK 1211
Query: 123 RESWKYIVEEIDDQI---HKSTGSLHKTKLHLSSDRLNRKFNRSTDSLDSEARASTSREQ 179
++E+ DQI K G + K K H+ R+F+ S+ +LD EA+ +E+
Sbjct: 1212 GSD---AIQELSDQIEQLQKQKGRIEKEKGHM-----QREFDESSAALDQEAKLRADQER 1263
Query: 180 PQKGQQVYQLQ 190
KG +V L+
Sbjct: 1264 IAKGYEVRLLE 1274
>sp|Q7A0M7|SYY_STAAW Tyrosine--tRNA ligase OS=Staphylococcus aureus (strain MW2) GN=tyrS
PE=3 SV=1
Length = 420
Score = 33.5 bits (75), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Query: 17 RKLWKELKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYT 76
R+L +++VG + + + L R+ D IP+ T + ++
Sbjct: 183 RELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWL 242
Query: 77 ETEKQRPVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEE 132
+ EK P Y+ +N DE + Y +E + + + +P RE+ K + EE
Sbjct: 243 DAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEE 302
Query: 133 IDDQIH 138
+ IH
Sbjct: 303 VTKFIH 308
>sp|A8Z2P6|SYY_STAAT Tyrosine--tRNA ligase OS=Staphylococcus aureus (strain USA300 /
TCH1516) GN=tyrS PE=3 SV=1
Length = 420
Score = 33.5 bits (75), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Query: 17 RKLWKELKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYT 76
R+L +++VG + + + L R+ D IP+ T + ++
Sbjct: 183 RELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWL 242
Query: 77 ETEKQRPVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEE 132
+ EK P Y+ +N DE + Y +E + + + +P RE+ K + EE
Sbjct: 243 DAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEE 302
Query: 133 IDDQIH 138
+ IH
Sbjct: 303 VTKFIH 308
>sp|Q6G8J9|SYY_STAAS Tyrosine--tRNA ligase OS=Staphylococcus aureus (strain MSSA476)
GN=tyrS PE=3 SV=1
Length = 420
Score = 33.5 bits (75), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Query: 17 RKLWKELKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYT 76
R+L +++VG + + + L R+ D IP+ T + ++
Sbjct: 183 RELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWL 242
Query: 77 ETEKQRPVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEE 132
+ EK P Y+ +N DE + Y +E + + + +P RE+ K + EE
Sbjct: 243 DAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEE 302
Query: 133 IDDQIH 138
+ IH
Sbjct: 303 VTKFIH 308
>sp|Q6GFX9|SYY_STAAR Tyrosine--tRNA ligase OS=Staphylococcus aureus (strain MRSA252)
GN=tyrS PE=3 SV=1
Length = 420
Score = 33.5 bits (75), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Query: 17 RKLWKELKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYT 76
R+L +++VG + + + L R+ D IP+ T + ++
Sbjct: 183 RELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWL 242
Query: 77 ETEKQRPVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEE 132
+ EK P Y+ +N DE + Y +E + + + +P RE+ K + EE
Sbjct: 243 DAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEE 302
Query: 133 IDDQIH 138
+ IH
Sbjct: 303 VTKFIH 308
>sp|Q7A537|SYY_STAAN Tyrosine--tRNA ligase OS=Staphylococcus aureus (strain N315)
GN=tyrS PE=1 SV=1
Length = 420
Score = 33.5 bits (75), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Query: 17 RKLWKELKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYT 76
R+L +++VG + + + L R+ D IP+ T + ++
Sbjct: 183 RELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWL 242
Query: 77 ETEKQRPVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEE 132
+ EK P Y+ +N DE + Y +E + + + +P RE+ K + EE
Sbjct: 243 DAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEE 302
Query: 133 IDDQIH 138
+ IH
Sbjct: 303 VTKFIH 308
>sp|Q99TD5|SYY_STAAM Tyrosine--tRNA ligase OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=tyrS PE=1 SV=1
Length = 420
Score = 33.5 bits (75), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Query: 17 RKLWKELKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYT 76
R+L +++VG + + + L R+ D IP+ T + ++
Sbjct: 183 RELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWL 242
Query: 77 ETEKQRPVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEE 132
+ EK P Y+ +N DE + Y +E + + + +P RE+ K + EE
Sbjct: 243 DAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEE 302
Query: 133 IDDQIH 138
+ IH
Sbjct: 303 VTKFIH 308
>sp|A6QHR2|SYY_STAAE Tyrosine--tRNA ligase OS=Staphylococcus aureus (strain Newman)
GN=tyrS PE=1 SV=1
Length = 420
Score = 33.5 bits (75), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Query: 17 RKLWKELKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYT 76
R+L +++VG + + + L R+ D IP+ T + ++
Sbjct: 183 RELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWL 242
Query: 77 ETEKQRPVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEE 132
+ EK P Y+ +N DE + Y +E + + + +P RE+ K + EE
Sbjct: 243 DAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEE 302
Query: 133 IDDQIH 138
+ IH
Sbjct: 303 VTKFIH 308
>sp|Q2YTG1|SYY_STAAB Tyrosine--tRNA ligase OS=Staphylococcus aureus (strain bovine RF122
/ ET3-1) GN=tyrS PE=3 SV=1
Length = 420
Score = 33.5 bits (75), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Query: 17 RKLWKELKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYT 76
R+L +++VG + + + L R+ D IP+ T + ++
Sbjct: 183 RELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWL 242
Query: 77 ETEKQRPVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEE 132
+ EK P Y+ +N DE + Y +E + + + +P RE+ K + EE
Sbjct: 243 DAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEE 302
Query: 133 IDDQIH 138
+ IH
Sbjct: 303 VTKFIH 308
>sp|A5ITQ1|SYY_STAA9 Tyrosine--tRNA ligase OS=Staphylococcus aureus (strain JH9) GN=tyrS
PE=3 SV=1
Length = 420
Score = 33.5 bits (75), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Query: 17 RKLWKELKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYT 76
R+L +++VG + + + L R+ D IP+ T + ++
Sbjct: 183 RELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWL 242
Query: 77 ETEKQRPVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEE 132
+ EK P Y+ +N DE + Y +E + + + +P RE+ K + EE
Sbjct: 243 DAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEE 302
Query: 133 IDDQIH 138
+ IH
Sbjct: 303 VTKFIH 308
>sp|Q2FXJ5|SYY_STAA8 Tyrosine--tRNA ligase OS=Staphylococcus aureus (strain NCTC 8325)
GN=tyrS PE=3 SV=1
Length = 420
Score = 33.5 bits (75), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Query: 17 RKLWKELKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYT 76
R+L +++VG + + + L R+ D IP+ T + ++
Sbjct: 183 RELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWL 242
Query: 77 ETEKQRPVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEE 132
+ EK P Y+ +N DE + Y +E + + + +P RE+ K + EE
Sbjct: 243 DAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEE 302
Query: 133 IDDQIH 138
+ IH
Sbjct: 303 VTKFIH 308
>sp|Q2FG09|SYY_STAA3 Tyrosine--tRNA ligase OS=Staphylococcus aureus (strain USA300)
GN=tyrS PE=3 SV=1
Length = 420
Score = 33.5 bits (75), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Query: 17 RKLWKELKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYT 76
R+L +++VG + + + L R+ D IP+ T + ++
Sbjct: 183 RELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWL 242
Query: 77 ETEKQRPVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEE 132
+ EK P Y+ +N DE + Y +E + + + +P RE+ K + EE
Sbjct: 243 DAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEE 302
Query: 133 IDDQIH 138
+ IH
Sbjct: 303 VTKFIH 308
>sp|A6U2J5|SYY_STAA2 Tyrosine--tRNA ligase OS=Staphylococcus aureus (strain JH1) GN=tyrS
PE=3 SV=1
Length = 420
Score = 33.5 bits (75), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Query: 17 RKLWKELKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYT 76
R+L +++VG + + + L R+ D IP+ T + ++
Sbjct: 183 RELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWL 242
Query: 77 ETEKQRPVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEE 132
+ EK P Y+ +N DE + Y +E + + + +P RE+ K + EE
Sbjct: 243 DAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEE 302
Query: 133 IDDQIH 138
+ IH
Sbjct: 303 VTKFIH 308
>sp|A7X3G2|SYY_STAA1 Tyrosine--tRNA ligase OS=Staphylococcus aureus (strain Mu3 / ATCC
700698) GN=tyrS PE=3 SV=1
Length = 420
Score = 33.5 bits (75), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Query: 17 RKLWKELKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYT 76
R+L +++VG + + + L R+ D IP+ T + ++
Sbjct: 183 RELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWL 242
Query: 77 ETEKQRPVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEE 132
+ EK P Y+ +N DE + Y +E + + + +P RE+ K + EE
Sbjct: 243 DAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEE 302
Query: 133 IDDQIH 138
+ IH
Sbjct: 303 VTKFIH 308
>sp|Q5HF45|SYY_STAAC Tyrosine--tRNA ligase OS=Staphylococcus aureus (strain COL) GN=tyrS
PE=3 SV=1
Length = 420
Score = 33.5 bits (75), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Query: 17 RKLWKELKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYT 76
R+L +++VG + + + L R+ D IP+ T + ++
Sbjct: 183 RELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWL 242
Query: 77 ETEKQRPVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEE 132
+ EK P Y+ +N DE + Y +E + + + +P RE+ K + EE
Sbjct: 243 DAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEE 302
Query: 133 IDDQIH 138
+ IH
Sbjct: 303 VTKFIH 308
>sp|P22326|SYY1_BACSU Tyrosine--tRNA ligase 1 OS=Bacillus subtilis (strain 168) GN=tyrS1
PE=2 SV=2
Length = 422
Score = 32.7 bits (73), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 5/122 (4%)
Query: 22 ELKVGTDCTFSFLCTRQSLERK-KTNNVDRIRTNIPVQTNGRKTPHKAAFDNLIYTETEK 80
+L++G + + L RK + IP+ T T I+ + EK
Sbjct: 188 KLQIGGSDQWGNITAGLELIRKSEEEGAKAFGLTIPLVTKADGTKFGKTEGGAIWLDKEK 247
Query: 81 QRPVSKYKELVNDPDEQTV----YSKTQSEERKSKSLTTSSVSPEQRESWKYIVEEIDDQ 136
P Y+ +N D V Y S+E + +PE+RE+ K + EE+
Sbjct: 248 TSPYEFYQFWINTDDRDVVKYLKYFTFLSKEEIEAYAEKTETAPEKREAQKRLAEEVTSL 307
Query: 137 IH 138
+H
Sbjct: 308 VH 309
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 234,706,009
Number of Sequences: 539616
Number of extensions: 10089697
Number of successful extensions: 26371
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 170
Number of HSP's that attempted gapping in prelim test: 26224
Number of HSP's gapped (non-prelim): 300
length of query: 628
length of database: 191,569,459
effective HSP length: 124
effective length of query: 504
effective length of database: 124,657,075
effective search space: 62827165800
effective search space used: 62827165800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)