Query psy1216
Match_columns 628
No_of_seqs 110 out of 128
Neff 1.8
Searched_HMMs 29240
Date Fri Aug 16 20:15:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1216.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1216hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gqq_A Protein UNC-119 homolog 100.0 8.9E-93 3.1E-97 664.1 18.1 185 418-628 10-194 (195)
2 4goj_C Protein UNC-119 homolog 100.0 9E-92 3.1E-96 672.2 17.2 196 407-628 44-239 (240)
3 3t5g_B Retinal ROD rhodopsin-s 100.0 2.6E-43 8.8E-48 321.0 10.3 133 448-622 16-148 (152)
4 4day_C Fanconi anemia group M 46.2 6.4 0.00022 29.5 1.0 16 561-576 13-28 (37)
5 1uw4_A UPF3X; nonsense mediate 32.7 27 0.00092 29.2 2.8 30 586-617 11-40 (91)
6 1hle_B Horse leukocyte elastas 26.3 40 0.0014 22.8 2.3 13 454-466 12-24 (31)
7 2h4p_B MENT, heterochromatin-a 25.6 42 0.0014 23.2 2.3 13 454-466 13-25 (34)
8 2xn6_B Thyroxine-binding globu 24.8 44 0.0015 23.3 2.3 13 454-466 13-25 (35)
9 2riv_B Thyroxine-binding globu 21.7 53 0.0018 23.6 2.3 13 454-466 18-30 (40)
10 3ndd_B Alpha-1-antitrypsin; se 21.0 58 0.002 22.9 2.4 16 454-470 14-29 (36)
11 4afx_B Protein Z dependent pro 20.1 61 0.0021 22.7 2.3 16 454-470 14-29 (36)
No 1
>3gqq_A Protein UNC-119 homolog A; human retinal protein 4, HRG4, U119A_human, HR3066A, NESG, structural genomics, PSI-2, protein structure initiative; 1.95A {Homo sapiens} PDB: 3rbq_A*
Probab=100.00 E-value=8.9e-93 Score=664.13 Aligned_cols=185 Identities=62% Similarity=1.116 Sum_probs=166.2
Q ss_pred hcCCCCChhhhhccccCCCccccCCCCceeeeeeeeEEEeeCCCCcEEEEeeCCCCCCCCCCCCCCCCCCCCCCcCCCCC
Q psy1216 418 LRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTPGNNAESPESQGDRNS 497 (628)
Q Consensus 418 l~k~~ITPEdVL~LtkpTe~YLC~PsANIYnIdFtRFKIRDlESG~VLFEIaKPp~se~~p~~e~~~~a~spe~~~~r~~ 497 (628)
-+++.||||+||+|++||++|||+|+||+|+|+|++|+|||||||+|||||+||++++..
T Consensus 10 ~~~~~itPe~Vl~l~~~t~~~LC~~~aN~y~I~F~~F~IRD~etg~vLFei~k~~~~~~~-------------------- 69 (195)
T 3gqq_A 10 HRKQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERL-------------------- 69 (195)
T ss_dssp --CCCCCGGGTTTCCSCCSSCSSCGGGCTTCCEEEEEEEEETTTCCEEEEEECCC-------------------------
T ss_pred cccCcCCHHHHhcccccCcceecCccccEeeeEEEEEEEeccCCCCEEEEecCCCCcccc--------------------
Confidence 368999999999999999999999999999999999999999999999999999765432
Q ss_pred CCCCccCCCCCCCCCCCceEEEEeCccccccccceeEEEEeecccccccceeEEEeeeCCcceeeeeeeeeeeeecCCcc
Q psy1216 498 TSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSIN 577 (628)
Q Consensus 498 ~s~d~d~~l~~~DpnagRfVRYQFppkFLklKtVgreIeFSVGdEPI~NFRMIERHYFRdqL~LKsfDFeFGFCIPnStN 577 (628)
.+++++.++++||+|||||||+||+||+|||+|+||||++||+||||||||||+|+| ||+|||+||||||||+|
T Consensus 70 -----~~~~~~~~~~~~R~vrYqF~~~~L~~k~V~~~i~Fsvgdkpi~nFRmierhyF~~~l-lk~~dF~FGFcIP~StN 143 (195)
T 3gqq_A 70 -----PINRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQL-LKSFDFHFGFCIPSSKN 143 (195)
T ss_dssp --------------CTTCEEEEECCGGGGGCSEEEEEEEEECCSSCBCSEEEEEEEEETTEE-EEEEEEECCCBCTTSEE
T ss_pred -----ccccccCCccccceEEEEeCHHHhcchhhceEEEEeeCCccccccEEEEEEEeCCce-eeEEeeeeeeEcCCCCc
Confidence 013567789999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cceEEEecCCCCHHHHHHHHhCCCcccccceEEeCCeEeeeccccccccCC
Q psy1216 578 TCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNGV 628 (628)
Q Consensus 578 TWEhIYE~PqLsedLieEMI~~PyETkSDSFYFVDNKLVMHNKADYaYnG~ 628 (628)
|||||||+|+|++++++|||+|||||+|||||||||||||||||+|+|+|.
T Consensus 144 TWE~iye~P~l~~~~i~emi~~P~et~SDSFYFVd~kLvMHNKA~Y~Y~gg 194 (195)
T 3gqq_A 144 TCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGT 194 (195)
T ss_dssp EEEEEEECCCCCHHHHHHHHHSTTCEEEEEEEEETTEEEEEEEEEEECC--
T ss_pred cceeeeecCCCCHHHHHHHHhCCCccccceeEEECCEEEEccceeccccCC
Confidence 999999999999999999999999999999999999999999999999984
No 2
>4goj_C Protein UNC-119 homolog A; small G protein ARL, GDI-like solubilizing factors, cilia, S protein; HET: GNP; 2.10A {Homo sapiens} PDB: 4gok_G*
Probab=100.00 E-value=9e-92 Score=672.18 Aligned_cols=196 Identities=59% Similarity=1.068 Sum_probs=160.8
Q ss_pred CCCCCCCHHHhhcCCCCChhhhhccccCCCccccCCCCceeeeeeeeEEEeeCCCCcEEEEeeCCCCCCCCCCCCCCCCC
Q psy1216 407 KEASPVTEEELLRKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTPGNNA 486 (628)
Q Consensus 407 ~~~~~~TEeeLl~k~~ITPEdVL~LtkpTe~YLC~PsANIYnIdFtRFKIRDlESG~VLFEIaKPp~se~~p~~e~~~~a 486 (628)
.+++..++++|+++..|||||||+|++||++|||+|+||+|+|+|++|+|||||||+|||||+||++++..+
T Consensus 44 ~~~~~~~~~~l~~~~~itPe~Vl~l~~~T~~yLC~~~aN~y~I~F~~F~IRD~etg~vlFei~kp~~~~~~~-------- 115 (240)
T 4goj_C 44 DAGPGPRPGPLQRKQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLP-------- 115 (240)
T ss_dssp ---------------CCCGGGTTTCCSCCSSCSSCGGGCTTCCEEEEEEEEETTTCCEEEEEEC----------------
T ss_pred cccCCCChhHHhccCCcCHHHHhcCcccccccccCccccccCcceeEEEEecCCCCeEEEEecCCCcccccc--------
Confidence 345567999999999999999999999999999999999999999999999999999999999997654321
Q ss_pred CCCCCcCCCCCCCCCccCCCCCCCCCCCceEEEEeCccccccccceeEEEEeecccccccceeEEEeeeCCcceeeeeee
Q psy1216 487 ESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDF 566 (628)
Q Consensus 487 ~spe~~~~r~~~s~d~d~~l~~~DpnagRfVRYQFppkFLklKtVgreIeFSVGdEPI~NFRMIERHYFRdqL~LKsfDF 566 (628)
.+..+.|+++||+|||||||+||+||+|||+|+||||++||+||||||||||||+| ||+|||
T Consensus 116 -----------------~~~~~~d~~agR~VrY~F~p~FLklktVga~i~Fsvgdkpv~nFRmiERhyFrd~l-LksfDF 177 (240)
T 4goj_C 116 -----------------INRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQL-LKSFDF 177 (240)
T ss_dssp ---------------------------CCEEEEEECGGGGGCSEEEEEEEEECCSSCEEEEEEEEEEEETTEE-EEEEEE
T ss_pred -----------------ccccccCcccCceEEEecCHHHhcccceeeEEEEeeCceehhcceeeehhhhcccc-hheecc
Confidence 13456789999999999999999999999999999999999999999999999999 999999
Q ss_pred eeeeeecCCcccceEEEecCCCCHHHHHHHHhCCCcccccceEEeCCeEeeeccccccccCC
Q psy1216 567 NFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSYNGV 628 (628)
Q Consensus 567 eFGFCIPnStNTWEhIYE~PqLsedLieEMI~~PyETkSDSFYFVDNKLVMHNKADYaYnG~ 628 (628)
+||||||||+||||||||+|+|+++++++||+|||||+|||||||||+|||||||||+|+|.
T Consensus 178 eFGFcIPnS~NTWE~IyE~p~ls~~l~~emi~~p~Et~sdSFYFvddkLvMHNKAdY~Y~g~ 239 (240)
T 4goj_C 178 HFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGT 239 (240)
T ss_dssp EEEEECTTCEEEEEEEEECCCCCHHHHHHHHHSTTCEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred ccceeccCCcccceeEEecCCcchhhHHHHHhCCCceeeeeeEEECCEEEEcchhhcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999984
No 3
>3t5g_B Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit delta...; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: b.1.18.8 PDB: 1ksg_B* 1ksj_B* 1ksh_B* 3t5i_B*
Probab=100.00 E-value=2.6e-43 Score=320.98 Aligned_cols=133 Identities=20% Similarity=0.387 Sum_probs=119.5
Q ss_pred eeeeeeEEEeeCCCCcEEEEeeCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCccCCCCCCCCCCCceEEEEeCccccc
Q psy1216 448 EIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLN 527 (628)
Q Consensus 448 nIdFtRFKIRDlESG~VLFEIaKPp~se~~p~~e~~~~a~spe~~~~r~~~s~d~d~~l~~~DpnagRfVRYQFppkFLk 527 (628)
++.+.+|+|||+|||+||||+++|++.. + .+. .++|||+||+
T Consensus 16 Gfk~~~m~iRD~dtG~vLwe~~kd~s~~-----~----------------------------~e~-----~aRfp~~~L~ 57 (152)
T 3t5g_B 16 GFKLNWMNLRDAETGKILWQGTEDLSVP-----G----------------------------VEH-----EARVPKKILK 57 (152)
T ss_dssp HEEEEEEEEEETTTCCEEEEECSCTTCT-----T----------------------------SEE-----EEEECGGGGG
T ss_pred CceEEEEEEEEcCCCcEEEEecCCCCCc-----c----------------------------ccc-----ceecCHHHhc
Confidence 5789999999999999999999985321 0 112 3349999999
Q ss_pred cccceeEEEEeecccccccceeEEEeeeCCcceeeeeeeeeeeeecCCcccceEEEecCCCCHHHHHHHHhCCCcccccc
Q psy1216 528 LKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDS 607 (628)
Q Consensus 528 lKtVgreIeFSVGdEPI~NFRMIERHYFRdqL~LKsfDFeFGFCIPnStNTWEhIYE~PqLsedLieEMI~~PyETkSDS 607 (628)
|++|||+|+||+ ++||+||||||||||+|+| ||+|||+||||||||+||||||||+|++++-+-.+.+++++-... +
T Consensus 58 ~~~V~~~i~Fs~-~epi~nFRmierhyf~~~l-le~~dF~FGF~IP~StNTWe~i~E~~~~~~mlpa~~lsGnv~IeT-~ 134 (152)
T 3t5g_B 58 CKAVSRELNFSS-TEQMEKFRLEQKVYFKGQC-LEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIET-K 134 (152)
T ss_dssp CSEEEEEEEEEE-SSCEEEEEEEEEEEETTEE-EEEEEEEEEEECTTEEEEEEEEEEBCCGGGSCCHHHHTTTEEEEE-E
T ss_pred chhheEEEEEec-cccccccEEEEEEEEcCce-eeeEeeeeeeEcCCCCcccceEEEcCCccccCCHhHcCCcEEEEE-E
Confidence 999999999995 9999999999999999999 999999999999999999999999999999999999999998777 8
Q ss_pred eEEeCCeEeeecccc
Q psy1216 608 FYFINNKLFMHNKAE 622 (628)
Q Consensus 608 FYFVDNKLVMHNKAD 622 (628)
|| .+|.||--+++-
T Consensus 135 f~-d~d~li~~s~vR 148 (152)
T 3t5g_B 135 FF-DDDLLVSTSRVR 148 (152)
T ss_dssp EE-ETTEEEEEEEEE
T ss_pred Ee-cCCEEEEEeEEE
Confidence 88 999999888764
No 4
>4day_C Fanconi anemia group M protein; OB fold, protein binding-hydrolase complex; 3.30A {Homo sapiens}
Probab=46.21 E-value=6.4 Score=29.54 Aligned_cols=16 Identities=38% Similarity=0.897 Sum_probs=13.5
Q ss_pred eeeeeeeeeeeecCCc
Q psy1216 561 LKTFDFNFGYCIPNSI 576 (628)
Q Consensus 561 LKsfDFeFGFCIPnSt 576 (628)
|=+-.|+.|||+|.|-
T Consensus 13 LFSVnFDLGf~~~dSD 28 (37)
T 4day_C 13 LFSVTFDLGFCSPDSD 28 (37)
T ss_pred eEEEEeccccccCCcc
Confidence 4577899999999985
No 5
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=32.65 E-value=27 Score=29.20 Aligned_cols=30 Identities=30% Similarity=0.398 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHhCCCcccccceEEeCCeEee
Q psy1216 586 PNLSKSLTQEMIDNPFHTKSDSFYFINNKLFM 617 (628)
Q Consensus 586 PqLsedLieEMI~~PyETkSDSFYFVDNKLVM 617 (628)
|.|+++...+.|..-+ .-|.||||.|++=+
T Consensus 11 P~LteeeF~~~l~~~~--~~d~~~fv~G~~s~ 40 (91)
T 1uw4_A 11 PTLTKEQLQEHLQPMP--EHDYFEFFSNDTSL 40 (91)
T ss_dssp TTCCHHHHHHHHCSCC--CEEEEEEEESCCSS
T ss_pred CCCCHHHHHHHhcCcc--cceEEEEeCCccCC
Confidence 7899999999988766 57899999988643
No 6
>1hle_B Horse leukocyte elastase inhibitor; hydrolase inhibitor(serine proteinase); 1.95A {Equus caballus} SCOP: e.1.1.1
Probab=26.27 E-value=40 Score=22.77 Aligned_cols=13 Identities=46% Similarity=0.662 Sum_probs=12.2
Q ss_pred EEEeeCCCCcEEE
Q psy1216 454 FKIRDIDSNTVLF 466 (628)
Q Consensus 454 FKIRDlESG~VLF 466 (628)
|-|+|-+||.+||
T Consensus 12 f~I~~~~t~~iLF 24 (31)
T 1hle_B 12 FFIRHNPSANILF 24 (31)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEEECCCCcEEE
Confidence 7799999999999
No 7
>2h4p_B MENT, heterochromatin-associated protein MENT; serine protease inhibitor, serpin, hydrolase inhibitor; 1.70A {Gallus gallus} PDB: 2h4q_B
Probab=25.63 E-value=42 Score=23.15 Aligned_cols=13 Identities=54% Similarity=0.772 Sum_probs=12.2
Q ss_pred EEEeeCCCCcEEE
Q psy1216 454 FKIRDIDSNTVLF 466 (628)
Q Consensus 454 FKIRDlESG~VLF 466 (628)
|-|+|-+||.+||
T Consensus 13 f~I~~~~t~~iLF 25 (34)
T 2h4p_B 13 FFIRHNKSKTILF 25 (34)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEEECCCCeEEE
Confidence 6799999999999
No 8
>2xn6_B Thyroxine-binding globulin; transport, cleaved protein; HET: F6Y T44; 1.29A {Homo sapiens} PDB: 2xn5_B* 2xn7_B*
Probab=24.78 E-value=44 Score=23.31 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=12.2
Q ss_pred EEEeeCCCCcEEE
Q psy1216 454 FKIRDIDSNTVLF 466 (628)
Q Consensus 454 FKIRDlESG~VLF 466 (628)
|-|+|-+||.+||
T Consensus 13 f~I~~~~t~~iLF 25 (35)
T 2xn6_B 13 LLILERSTRSILF 25 (35)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEEECCCCcEEE
Confidence 6799999999999
No 9
>2riv_B Thyroxine-binding globulin; TBG, serpin, cleaved, mutation, glycoprotein, secreted, signaling protein; 1.50A {Homo sapiens} PDB: 2riw_B* 2xn3_B*
Probab=21.69 E-value=53 Score=23.55 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=12.2
Q ss_pred EEEeeCCCCcEEE
Q psy1216 454 FKIRDIDSNTVLF 466 (628)
Q Consensus 454 FKIRDlESG~VLF 466 (628)
|-|+|-+||.+||
T Consensus 18 f~I~~~~t~~iLF 30 (40)
T 2riv_B 18 LLILERSTRSILF 30 (40)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEEeCCCCcEEE
Confidence 6799999999999
No 10
>3ndd_B Alpha-1-antitrypsin; serpin, hydrolase inhibitor; 1.50A {Homo sapiens} PDB: 1ezx_B 3ndf_B 7api_B* 8api_B* 9api_B* 2d26_B
Probab=21.03 E-value=58 Score=22.86 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=13.5
Q ss_pred EEEeeCCCCcEEEEeeC
Q psy1216 454 FKIRDIDSNTVLFEIAK 470 (628)
Q Consensus 454 FKIRDlESG~VLFEIaK 470 (628)
|-|+|-+||.+|| +.+
T Consensus 14 f~I~~~~t~~iLF-~G~ 29 (36)
T 3ndd_B 14 FLMIEQNTKSPLF-MGK 29 (36)
T ss_dssp EEEEETTTCCEEE-EEE
T ss_pred EEEEECCCCcEEE-EEE
Confidence 6799999999999 444
No 11
>4afx_B Protein Z dependent protease inhibitor; hydrolase inhibitor, serpin, protein Z dependent inhibitor, coagulation; 2.09A {Homo sapiens} PDB: 4aju_B
Probab=20.11 E-value=61 Score=22.75 Aligned_cols=16 Identities=31% Similarity=0.596 Sum_probs=13.5
Q ss_pred EEEeeCCCCcEEEEeeC
Q psy1216 454 FKIRDIDSNTVLFEIAK 470 (628)
Q Consensus 454 FKIRDlESG~VLFEIaK 470 (628)
|-|+|-+||.+|| +++
T Consensus 14 f~I~~~~t~~iLF-~G~ 29 (36)
T 4afx_B 14 FMIYEETSGMLLF-LGR 29 (36)
T ss_dssp EEEEETTTTEEEE-EEE
T ss_pred EEEEECCCCcEEE-EEE
Confidence 7799999999999 444
Done!