RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1216
         (628 letters)



>gnl|CDD|203238 pfam05351, GMP_PDE_delta, GMP-PDE, delta subunit.  GMP-PDE delta
           subunit was originally identified as a fourth subunit of
           rod-specific cGMP phosphodiesterase (PDE)(EC:3.1.4.35).
           The precise function of PDE delta subunit in the rod
           specific GMP-PDE complex is unclear. In addition, PDE
           delta subunit is not confined to photoreceptor cells but
           is widely distributed in different tissues. PDE delta
           subunit is thought to be a specific soluble transport
           factor for certain prenylated proteins and Arl2-GTP a
           regulator of PDE-mediated transport.
          Length = 156

 Score =  217 bits (554), Expect = 1e-67
 Identities = 94/186 (50%), Positives = 116/186 (62%), Gaps = 30/186 (16%)

Query: 441 SPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTPGNNAESPESQGDRNSTSH 500
            P+AN+Y I+F RFKIRD ++  VLFEIAK  +    P                      
Sbjct: 1   RPEANLYGIKFTRFKIRDAETGKVLFEIAKDPSDEDLPEE-------------------- 40

Query: 501 DTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVH 560
                    DPN GR VRYQF PKFL LK +GAT+ F++GD  + NFRMIE+HYF   + 
Sbjct: 41  ---------DPNAGREVRYQFPPKFLKLKTVGATVEFTVGDKPVKNFRMIERHYFKGQL- 90

Query: 561 LKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNK 620
           LK+FDF FG+CIPNS NT EHIY FP LS+ L  EM+  P+ T+SDSFYF++NKL MHNK
Sbjct: 91  LKSFDFEFGFCIPNSTNTWEHIYEFPPLSQMLPAEMLSGPYETRSDSFYFVDNKLVMHNK 150

Query: 621 AEYSYN 626
           A Y Y+
Sbjct: 151 ARYFYS 156


>gnl|CDD|162723 TIGR02137, HSK-PSP, phosphoserine phosphatase/homoserine
           phosphotransferase bifunctional protein.  This protein
           is has been characterized as both a phosphoserine
           phosphatase and a phosphoserine:homoserine
           phosphotransferase. In Pseudomonas aeruginosa, where the
           characterization was done, a second phosphoserine
           phosphatase (SerB) and a second homoserine kinase (thrB)
           are found, but in Fibrobacter succinogenes neither are
           present. This enzyme is a member of the haloacid
           dehalogenase (HAD) superfamily, specifically part of
           subfamily IB by virtue of the presence of an alpha
           helical domain in between motifs I and II of the HAD
           domain. The closest homologs to this family are
           monofunctional phosphoserine phosphatases (TIGR00338).
          Length = 203

 Score = 31.8 bits (72), Expect = 0.71
 Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 536 TFSIGDFEINNFRMIEK-HYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQ 594
             S+  F+   +R+I     +NDT  L        +  P ++     I  FP      T 
Sbjct: 134 RQSVIAFKSLYYRVIAAGDSYNDTTMLSEAHAGILFHAPENV-----IREFPQFPAVHTY 188

Query: 595 EMIDNPFHTKSD 606
           E +   F   S 
Sbjct: 189 EDLKREFLKASS 200


>gnl|CDD|217713 pfam03754, DUF313, Domain of unknown function (DUF313).  Family of
           proteins from Arabidopsis thaliana with uncharacterized
           function.
          Length = 112

 Score = 30.0 bits (68), Expect = 1.2
 Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 16/64 (25%)

Query: 264 VETRRVDEKTYEERKMNLKTMNTTSLFQRLVQPRLQMFN--------NFCDTMVLVRDWQ 315
            E R ++E   +++ + +  +        LV P  + +               VLV  W 
Sbjct: 56  EEKRIIEEDKNKDKDIGVGVI--------LVDPESKKWVLKLKKWDMKSTLNYVLVCGWN 107

Query: 316 LVCD 319
            V +
Sbjct: 108 DVVE 111


>gnl|CDD|150021 pfam09193, CholecysA-Rec_N, Cholecystokinin A receptor, N-terminal.
            Members of this family are found in the extracellular
           region of the cholecystokinin A receptor, where they
           adopt a tertiary structure consisting of a few helical
           turns and a disulphide-crosslinked loop. They are
           required for interaction of the cholecystokinin A
           receptor with it's corresponding hormonal ligand.
          Length = 47

 Score = 28.3 bits (63), Expect = 1.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 393 QNENMTCLDDSPSSKEASPV 412
           +NE + CLD    SKE  P 
Sbjct: 23  ENETLFCLDQPRPSKEWQPA 42


>gnl|CDD|165391 PHA03118, PHA03118, multifunctional expression regulator;
           Provisional.
          Length = 474

 Score = 31.2 bits (70), Expect = 2.0
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 12/94 (12%)

Query: 95  DEQTVYSKTQSEERKS-KSLTTSSVSPEQRESWKY-----------IVEEIDDQIHKSTG 142
           D +  ++  ++ ERKS KS    S    + ES +               E  DQ H +  
Sbjct: 119 DTEPGHAHIENGERKSPKSYNQQSRKKHRDESLRNKHGRPSGPPAMSPGEHFDQTHDAEY 178

Query: 143 SLHKTKLHLSSDRLNRKFNRSTDSLDSEARASTS 176
            L   +     DR+ ++++  TD +  +A  +  
Sbjct: 179 RLRFNERDARRDRIRKEYDIPTDKITEQAIETLK 212


>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1
           (LMP1).  This family consists of several latent membrane
           protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1
           of EBV is a 62-65 kDa plasma membrane protein possessing
           six membrane spanning regions, a short cytoplasmic
           N-terminus and a long cytoplasmic carboxy tail of 200
           amino acids. EBV latent membrane protein 1 (LMP1) is
           essential for EBV-mediated transformation and has been
           associated with several cases of malignancies. EBV-like
           viruses in Cynomolgus monkeys (Macaca fascicularis) have
           been associated with high lymphoma rates in
           immunosuppressed monkeys.
          Length = 382

 Score = 30.8 bits (69), Expect = 2.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 471 PANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIPKDPN 512
           P N    P +T  N  + P++  D      D   +N P+DP+
Sbjct: 249 PDNGPQDPDNTDDNGPQDPDNTDDNGPQDPDNTDDNGPQDPD 290


>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase.
          Length = 936

 Score = 29.2 bits (66), Expect = 8.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 222 DFSEGTNVDPDDVEDVEEIVME 243
           DFS G  + P+++ +VE +V E
Sbjct: 631 DFSHGKPMTPEELREVESLVNE 652


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.314    0.129    0.375 

Gapped
Lambda     K      H
   0.267   0.0784    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,636,122
Number of extensions: 2875128
Number of successful extensions: 1980
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1977
Number of HSP's successfully gapped: 24
Length of query: 628
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 525
Effective length of database: 6,369,140
Effective search space: 3343798500
Effective search space used: 3343798500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (27.6 bits)