RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1216
(628 letters)
>3gqq_A Protein UNC-119 homolog A; human retinal protein 4, HRG4,
U119A_human, HR3066A, NESG, structural genomics, PSI-2,
protein structure initiative; 1.95A {Homo sapiens} PDB:
3rbq_A*
Length = 195
Score = 219 bits (559), Expect = 3e-68
Identities = 114/209 (54%), Positives = 145/209 (69%), Gaps = 26/209 (12%)
Query: 419 RKPYITPEDVLCLNHITENYLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTP 478
RK I PEDVL L IT +YLCSP+ NIY+I+F+RFKIRD+DS TVLFEI KP + P
Sbjct: 11 RKQPIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLP 70
Query: 479 SSTPGNNAESPESQGDRNSTSHDTQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFS 538
+ DPN GRFVRYQFTP FL L+ +GAT+ F+
Sbjct: 71 INRR-------------------------DLDPNAGRFVRYQFTPAFLRLRQVGATVEFT 105
Query: 539 IGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMID 598
+GD +NNFRMIE+HYF + + LK+FDF+FG+CIP+S NTCEHIY FP LS+ L EMI
Sbjct: 106 VGDKPVNNFRMIERHYFRNQL-LKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIR 164
Query: 599 NPFHTKSDSFYFINNKLFMHNKAEYSYNG 627
+P+ T+SDSFYF++++L MHNKA+YSY+G
Sbjct: 165 HPYETQSDSFYFVDDRLVMHNKADYSYSG 193
>3t5g_B Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase
subunit delta...; immunoglobulin-like beta sandwitch,
PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1ksg_B* 1ksj_B* 1ksh_B* 3t5i_B*
Length = 152
Score = 135 bits (341), Expect = 2e-37
Identities = 28/177 (15%), Positives = 60/177 (33%), Gaps = 42/177 (23%)
Query: 449 IEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTPGNNAESPESQGDRNSTSHDTQANNIP 508
+ +RD ++ +L++ +
Sbjct: 17 FKLNWMNLRDAETGKILWQGTED------------------------------------- 39
Query: 509 KDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNF 568
G + K L K + + FS + ++ FR+ +K YF L+ + F F
Sbjct: 40 -LSVPGVEHEARVPKKILKCKAVSRELNFSSTE-QMEKFRLEQKVYFKGQC-LEEWFFEF 96
Query: 569 GYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKAEYSY 625
G+ IPNS NT + + S+ + ++ ++ +F ++ L ++ Y
Sbjct: 97 GFVIPNSTNTWQSLIEAAPESQMMPASVLTGNV--IIETKFFDDDLLVSTSRVRLFY 151
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.8 bits (162), Expect = 1e-11
Identities = 86/506 (16%), Positives = 149/506 (29%), Gaps = 144/506 (28%)
Query: 205 FETTHTK-SYKHI-KHGTGDFSEGTNVDPDDVEDVEEIVMENRNVD-----ANFDRRTSR 257
FET + YK I F + N D DV+D+ + ++ +D + T R
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVD--NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 258 Y----------SSQEFVETRRVDEKTYEERKMNLKTMNTTSLFQRLVQPRL--QMFNNFC 305
Q+FVE V Y+ +KT QP + +M+
Sbjct: 67 LFWTLLSKQEEMVQKFVEE--VLRINYKFLMSPIKT--------EQRQPSMMTRMYIEQR 116
Query: 306 DTMVLVRDWQLVCDSKVKCVPTRQECDTQNIRT--TKVK-------------GKETKYKI 350
D L D Q+ V +R + + +R +++ GK
Sbjct: 117 D--RLYNDNQVFAKYNV----SRLQPYLK-LRQALLELRPAKNVLIDGVLGSGKTW---- 165
Query: 351 NFLSGST--SEKIKSAY-FNLQWYHGISEFSFERVTSRMNAVSNGQNENMTCLDDSPSSK 407
++ S K++ F + W + + S E V + + + N T D S+
Sbjct: 166 --VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 408 EASPVTEEELLR-----KPYITPEDVLCLNHITENYLCSPDANIYEIEF-LRFKI----R 457
+ + + LR KPY +L L ++ +A + F L KI R
Sbjct: 224 KLRIHSIQAELRRLLKSKPY--ENCLLVLLNVQ-------NAKAWN-AFNLSCKILLTTR 273
Query: 458 D------IDSNTVLFEIAKPANTASTPSSTPG--------NNAESPESQGDRNSTSHDTQ 503
+ + T + TP + P N
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 504 ANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHY-----FNDT 558
A +I T ++ +N + I S+ E +R K + F +
Sbjct: 334 AESIRDGLATWDNWKH------VNCDKLTTIIESSLNVLEPAEYR---KMFDRLSVFPPS 384
Query: 559 VHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKS-------DSFYFI 611
H IP + + + ++ N H S +S I
Sbjct: 385 AH-----------IPTIL-----LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 612 -----------NNKLFMHNKAEYSYN 626
N+ +H YN
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYN 454
Score = 52.9 bits (126), Expect = 3e-07
Identities = 99/627 (15%), Positives = 180/627 (28%), Gaps = 182/627 (29%)
Query: 79 EKQRPV---SKYKELVNDPD-EQTVYSKTQSEERKSKSLTTSSVSPEQRESWKYIVEEID 134
+ + + + ++ D + K + + V R ++K+++ I
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 135 DQIHKSTGSLHKTKLHLSSDRLNRKFNRSTDSLDSE--ARASTSREQPQKGQQVYQLQKD 192
+ + + T++++ +R +N D++ A+ + SR QP +L++
Sbjct: 100 TEQRQPSM---MTRMYIEQ--RDRLYN------DNQVFAKYNVSRLQP-----YLKLRQ- 142
Query: 193 YQPYQTDNQRSLFETTHTKSYKHIK-HGTGDFSEGTNV------DPDDVEDV-------- 237
+L E + K++ G G V+
Sbjct: 143 ----------ALLEL---RPAKNVLIDGVLGS--GKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 238 -------EEIVMEN-----RNVDANFDRRTSRYSSQEFVETRRVDEKTYEERKMNLKTMN 285
E V+E +D N+ R+ S+ + R+ E R++
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK----LRIHSIQAELRRLLKSKPY 243
Query: 286 TTSLFQRLV-----QPR-LQMFNNFCDTMVLVRDWQLVCDSKVKCVPTRQECDTQNIRTT 339
L LV + FN C ++ R Q V D T D ++ T
Sbjct: 244 ENCL---LVLLNVQNAKAWNAFNLSCKILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLT 299
Query: 340 KVKGKE--TKY-------------KIN-FLSGSTSEKIKS--AYFNLQWYHGISEFSFER 381
+ K KY N +E I+ A ++ W H + ++
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD-NWKH----VNCDK 354
Query: 382 VTSRMNAVSNGQNENMTCLDDSPSSKEASPVTEEELLRKPY----ITPEDVLCLNHITEN 437
+T+ + + L+ V E RK + + P HI
Sbjct: 355 LTTIIES----------SLN----------VLEPAEYRKMFDRLSVFPPSA----HIPTI 390
Query: 438 YLCSPDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTPGNNAESPESQGDRNS 497
L + F + D V+ ++ K S E Q ++
Sbjct: 391 LLSL----------IWFDVIKSDVMVVVNKLHK--------YS-------LVEKQPKEST 425
Query: 498 TS-HDTQANNIPKDPNTG----RFV-RYQFTPKF----LNLKNIGATITFSIGDFEINNF 547
S K N V Y F L + IG + N
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG-HHLKNI 484
Query: 548 RMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMID----NPFHT 603
E+ V L DF F + I H N S S+ + P+
Sbjct: 485 EHPERMTLFRMVFL---DFRF---LEQKI---RHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 604 KSDSFY--FINNKL-FMHNKAEYSYNG 627
+D Y +N L F+ E
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICS 562
Score = 41.0 bits (95), Expect = 0.001
Identities = 35/316 (11%), Positives = 81/316 (25%), Gaps = 108/316 (34%)
Query: 20 WKELKVGTDCT-------FSFLCTRQSLERKKTNNVDRIRTNIPVQTNGRKT-------- 64
W L + + L + ++ T+ D +NI ++ + +
Sbjct: 186 W--LNLKNCNSPETVLEMLQKLLYQ--IDPNWTSRSDHS-SNIKLRIHSIQAELRRLLKS 240
Query: 65 -PHK---------------AAFDN----LIYTETEK---QRPVSKYKELVNDPDEQTVYS 101
P++ AF+ L+ T ++ + + D +
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD-HHSMTLT 299
Query: 102 KTQSEERKSKSLTTSSVS-PEQRES-----WKYIVEEIDDQIHKSTGSLHKTKLHLSSDR 155
+ + K L P + + I E I D + H++ D+
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-----DNWKHVNCDK 354
Query: 156 LNRKFNRSTDSLDSEARASTSREQPQKGQQVYQLQKDYQPYQTDNQRSLFETTHTKSYKH 215
L S + L+ P + ++++ L
Sbjct: 355 LTTIIESSLNVLE-----------PAEYRKMFD--------------RLS---------- 379
Query: 216 IKHGTGDFSEGTNV------------DPDDVEDVEEIVMENRNVDANFDRRTSRYSSQEF 263
+ F ++ DV V + + V+ T S
Sbjct: 380 V------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 264 VETRRVDEKTYEERKM 279
+++ + R +
Sbjct: 434 ELKVKLENEYALHRSI 449
Score = 28.7 bits (63), Expect = 8.9
Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 41/118 (34%)
Query: 5 EDN-----LLYH-------------RKLFIRKLWKELKV---GT--DCTFSFLCTRQSLE 41
D + +H R +F+ + E K+ T + + S L T Q L+
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 42 RKK---TNN-------VDRIRTNIP-VQTNGRKTPH----KAAF---DNLIYTETEKQ 81
K +N V+ I +P ++ N + + + A D I+ E KQ
Sbjct: 529 FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 1e-04
Identities = 90/621 (14%), Positives = 180/621 (28%), Gaps = 210/621 (33%)
Query: 82 RPVSKYKELVNDPDEQTV-------YSKTQSEERKSKSL---TTSSVSPEQRESWKYIVE 131
RP++ L + E + + +Q +E+ +K L T + ++ +
Sbjct: 7 RPLT----LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTT----PA 58
Query: 132 E--------IDDQIHKSTGSLHKTKLHLSSDRLNRKFNRSTD--SLDSEARASTSREQPQ 181
E + + S L+L + D +L A +E
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL----AAKLLQENDT 114
Query: 182 KGQQVYQLQKDY--------QPYQTDNQRSLFETTHTKSYKHIKHGTGDFSE----GTNV 229
+ +L K+Y +P+ + +LF + + + + G
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ-L------VAIFGGQGNTD 167
Query: 230 DPDDVEDVEEIVMENRNVDANFDRRTSRYSSQEFVETRRVDEKTYEERKMNLKTMNTTSL 289
D EE+ R++ + T + ++ +
Sbjct: 168 DY-----FEEL----RDL---YQ--TYHVLVGDLIKF-------------------SAET 194
Query: 290 FQRLVQPRLQ---MFNNFCDTMVLVRDW----------QLVCDSKVKCVP----TRQECD 332
L++ L +F + + +W + + C P Q
Sbjct: 195 LSELIRTTLDAEKVFTQGLN----ILEWLENPSNTPDKDYLLSIPISC-PLIGVI-QLA- 247
Query: 333 TQNIRTTKVKGKETKYKINFLSGST--SEKIKSAYFNLQWYHGI----SEFSFERVTSRM 386
+ T K+ G ++L G+T S+ + +A I S SF +
Sbjct: 248 -HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA-------IAETDSWESFFVSVRKA 299
Query: 387 NAV-----SNGQ----NENM--TCLDDSPSSKEASP--------VTEEELLRKPYIT--- 424
V N ++ + L+DS + E P +T+E++ Y+
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD--YVNKTN 357
Query: 425 ---PEDVLCLNHI-------TENY-LCSPDANIYEIEF-LRFKIR---DIDSNTVLFEIA 469
P + +N + P ++Y + LR K + +D + + F
Sbjct: 358 SHLPAG----KQVEISLVNGAKNLVVSGPPQSLYGLNLTLR-KAKAPSGLDQSRIPFSER 412
Query: 470 KPANTAS-TPSSTP------GNNAESPESQGDRNSTSHDTQANNIP-KDPNTGRFVRYQF 521
K + P ++P ++ +N+ S + + IP D G
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS------ 466
Query: 522 TPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHLKTFDFNFGYCIPNSINTCEH 581
+L+ + +I+ I I V +T H
Sbjct: 467 -----DLRVLSGSISERI-------VDCI----IRLPVKWET-------TTQFKAT---H 500
Query: 582 IYVF-P-NLSK--SLTQEMID 598
I F P S LT D
Sbjct: 501 ILDFGPGGASGLGVLTHRNKD 521
Score = 37.3 bits (86), Expect = 0.016
Identities = 54/402 (13%), Positives = 103/402 (25%), Gaps = 184/402 (45%)
Query: 9 LYHRKLFIRKLWKELKVGTDCTFSFLCTRQSLERKKTNNVDRIRTNIPVQ-------TNG 61
LY + +W T+ F S+ +D + N PV G
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGF-----SI-------LDIVINN-PVNLTIHFGGEKG 1681
Query: 62 RKTPHKAAFDNLIYTETEKQRPVSK--YKELV--------NDPDE---QTVYSKTQSEER 108
++ + + +I+ + ++ +KE+ T + TQ
Sbjct: 1682 KRI--RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF--TQP--- 1734
Query: 109 KSKSLTTSSVSPEQRESWKYIVEEIDDQIHKSTGSLHKTKL---H-------LSSDRLNR 158
+LT + E++ KS G + H L+S
Sbjct: 1735 ---ALTLMEKA---------AFEDL-----KSKGLIPADATFAGHSLGEYAALAS----- 1772
Query: 159 KFNRSTDSLDSEA-------RASTSREQPQKGQQVYQLQKDYQPYQTDNQRSLFETTHTK 211
D + E+ R T + + +
Sbjct: 1773 ----LADVMSIESLVEVVFYRGMTMQVAVPRDE--------------------------- 1801
Query: 212 SYKHIKHGTGDFSEGTNVDPDDV------EDVEEIVMENRNVDANFDRRTSRYSSQEFVE 265
G ++ ++P V E ++ +V +RT VE
Sbjct: 1802 ------LGRSNYG-MIAINPGRVAASFSQEALQYVV-------ERVGKRTG-----WLVE 1842
Query: 266 TRRVDEKTYEERKMNLKTMNTTSLFQRLVQPRLQMFNNFCDTMVLVRDWQLVCDSKVKCV 325
V N +N V + Q V ++ +
Sbjct: 1843 I--V----------N--------------------YN--------VENQQYVAAGDLRAL 1862
Query: 326 PTRQECDTQNIRTTKVKGKETKYKINFLSGSTS-EKIKSAYF 366
+ T + K++ K I L S S E+++ F
Sbjct: 1863 ----DTVTNVLNFIKLQ----KIDIIELQKSLSLEEVEGHLF 1896
Score = 31.9 bits (72), Expect = 0.88
Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 30/97 (30%)
Query: 341 VKGKETKYKINFLSGSTSEKIKSAYFNLQWYHGISEFSFERVTSRMNAVSNGQNENMTCL 400
V I+F G ++I+ Y S FE T +
Sbjct: 1665 VINNPVNLTIHF-GGEKGKRIRENY---------SAMIFE-----------------TIV 1697
Query: 401 DDSPSSKEASPVTEEELLRKPYITPEDVLCLNHITEN 437
D +++ E + + + +L T+
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFRSEKGLLSA---TQF 1731
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.29
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 181 QKGQQVYQLQKDYQPYQTDNQRSL 204
+K Q + +LQ + Y D+ +L
Sbjct: 18 EK-QALKKLQASLKLYADDSAPAL 40
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A
{Saccharomyces cerevisiae}
Length = 956
Score = 32.0 bits (71), Expect = 0.74
Identities = 25/200 (12%), Positives = 66/200 (33%), Gaps = 24/200 (12%)
Query: 80 KQRPVSKYKELVNDPDEQTVYSKTQSEERKSKSLTTSSVSPEQRESWKYIVEEIDDQIHK 139
+++ S EL+N + + E K +L + E I+E+
Sbjct: 718 QEQLKSMINELINSKISTFLRDQMDQFELKINALLDKIL----EEKVTRIIEQKLGSHTG 773
Query: 140 STGSLHKTKLHLSSDRLNRKFNRSTDSLDSEARASTSREQPQKGQQVYQLQKDYQPYQTD 199
+L + +L+++ + L + + + + + Q + +
Sbjct: 774 KFSTLKRPQLYMTEEHNVGFDMEVPKKLRTSGKYAETVKDNDDHQAMSTTASPSPEQDQE 833
Query: 200 NQRSLFETTHTKSYKHIKHGTGDFSEGTNVDPDDVEDVEEIVMENRNVDANFDRRTSRYS 259
+ E +D ++ +E I++E +A + +
Sbjct: 834 AKSYTDEQEF------------------MLDKS-IDSIEGIILEWFTPNAKYANQCVHSM 874
Query: 260 SQEFVETRRVDEKT-YEERK 278
++ ++ R + + Y+ERK
Sbjct: 875 NKSGNKSWRANCEALYKERK 894
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit,
CAMP-dependent protein kinase catalytic subunit A;
isoform diversity; HET: TPO SEP ATP; 3.70A {Homo
sapiens}
Length = 381
Score = 30.1 bits (67), Expect = 2.3
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 29/164 (17%)
Query: 169 SEARASTSREQPQKGQQVY-------QLQKDYQPYQTDNQ--------RSLFETTHTKSY 213
S + ++ KG ++Y Q+ KD + ++ R FE +
Sbjct: 3 SPPACPSEEDESLKGCELYVQLHGIQQVLKDCIVHLCISKPERPMKFLREHFEKLEKEEN 62
Query: 214 KHIKHGTGDFSEGTNVDPDDVEDVEEIVMENRNVDANFDRRTS----RYSSQEFVE-TRR 268
+ I S+ + D + V++ R RR Y+ ++ V R+
Sbjct: 63 RQILARQKSNSQSDSHDEEVSPTPPNPVVKARR------RRGGVSAEVYTEEDAVSYVRK 116
Query: 269 VDEKTYEERKMNLKTMNTTSLFQRLVQPRLQMFNNFCDTMVLVR 312
V K Y+ K ++ LF L D M V
Sbjct: 117 VIPKDYKTMTALAKAISKNVLFAHLDDNERSD---IFDAMFPVT 157
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB
tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A
{Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Length = 416
Score = 29.7 bits (66), Expect = 3.3
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 10/95 (10%)
Query: 225 EGTNVDPDDVEDVEEIVMENRNVDANFDRRTS-------RYSSQEFVETRRVDEKTYEER 277
++ + + E+ E N V F RR S ++ E+R + KT ++R
Sbjct: 81 MRSDSENGEEEEAAEAGAFNAPVINRFTRRASVCAEAYNPDEEEDDAESRIIHPKTDDQR 140
Query: 278 KMNLKTMNTTSLFQRLVQPRLQMFNNFCDTMVLVR 312
+ LF+ L ++ D M
Sbjct: 141 NRLQEACKDILLFKNLDPEQMSQ---VLDAMFEKL 172
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains
containing mixed alpha/beta structures, PSI; HET: PLM;
2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Length = 289
Score = 28.3 bits (64), Expect = 7.0
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 18/69 (26%)
Query: 87 YKELVN-DPDEQTVYSKTQSEERKSKSLTTSSVSPEQ-RESWKYIVEEIDDQIHKSTGSL 144
YK+ + +P + VY R+ ++ T+ SP +E + +E ++
Sbjct: 39 YKDGITIEPKQ--VYDAM----RQGHTVKTAQPSPLAMKELFLPYAKENRPCLY------ 86
Query: 145 HKTKLHLSS 153
+ SS
Sbjct: 87 ----IAFSS 91
>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme,
structural genomics; 1.65A {Vibrio cholerae o1 biovar el
tor} PDB: 3t6m_A
Length = 268
Score = 28.0 bits (63), Expect = 7.8
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 405 SSKEASPVTE--EELLRKPYITPEDVLCLNHITENYLCSPDANIYEIEF 451
S+ SPV +EL+ + +TP D C + + L + I + F
Sbjct: 1 SNATDSPVLALAKELISRQSVTPADAGCQDLM-IERLKALGFEIESMVF 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.375
Gapped
Lambda K H
0.267 0.0520 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,013,200
Number of extensions: 514424
Number of successful extensions: 838
Number of sequences better than 10.0: 1
Number of HSP's gapped: 828
Number of HSP's successfully gapped: 27
Length of query: 628
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 529
Effective length of database: 3,937,614
Effective search space: 2082997806
Effective search space used: 2082997806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.4 bits)