RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1216
         (628 letters)



>d1kshb_ b.1.18.8 (B:) GMP-PDE delta {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 149

 Score =  153 bits (389), Expect = 1e-44
 Identities = 28/184 (15%), Positives = 62/184 (33%), Gaps = 42/184 (22%)

Query: 442 PDANIYEIEFLRFKIRDIDSNTVLFEIAKPANTASTPSSTPGNNAESPESQGDRNSTSHD 501
               +   +     +RD ++  +L++  +  +                            
Sbjct: 7   AREILRGFKLNWMNLRDAETGKILWQGTEDLSVP-------------------------- 40

Query: 502 TQANNIPKDPNTGRFVRYQFTPKFLNLKNIGATITFSIGDFEINNFRMIEKHYFNDTVHL 561
                       G     +   K L  K +   + FS  + ++  FR+ +K YF     L
Sbjct: 41  ------------GVEHEARVPKKILKCKAVSRELNFSSTE-QMEKFRLEQKVYFKGQC-L 86

Query: 562 KTFDFNFGYCIPNSINTCEHIYVFPNLSKSLTQEMIDNPFHTKSDSFYFINNKLFMHNKA 621
           + + F FG+ IPNS NT + +      S+ +   ++        ++ +F ++ L   ++ 
Sbjct: 87  EEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGN--VIIETKFFDDDLLVSTSRV 144

Query: 622 EYSY 625
              Y
Sbjct: 145 RLFY 148


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.129    0.375 

Gapped
Lambda     K      H
   0.267   0.0613    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,260,058
Number of extensions: 105331
Number of successful extensions: 221
Number of sequences better than 10.0: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 9
Length of query: 628
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 537
Effective length of database: 1,158,166
Effective search space: 621935142
Effective search space used: 621935142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.6 bits)