BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12161
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1RGP|A Chain A, Gtpase-Activation Domain From Rhogap
Length = 242
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/242 (46%), Positives = 156/242 (64%), Gaps = 12/242 (4%)
Query: 103 HLNLDQLCIPRQVIEHDERLTAKLSKGSVLPTPLTSSVTNLTYSPTQQFGASLQHIKDNN 162
H+ L+QL IPRQV+++D+ L K ++ S P + P QQFG SLQH+++ N
Sbjct: 1 HVKLEQLGIPRQVLKYDDFL--KSTQKS--PATAPKPMPPRPPLPNQQFGVSLQHLQEKN 56
Query: 163 GGDVIAPI-LRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILF--HNDIH 219
PI LR+ V YL Q AL TEG+FRRSA+ +VR+ Q N G P+ F +N++H
Sbjct: 57 PEQEPIPIVLRETVAYL-QAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELH 115
Query: 220 LAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKIL-ILEKLPTDNYTVLKY 278
L AV+LKTFLREL EPLLT+DLY ++ F LN DE R L +L+ LP +NY VL++
Sbjct: 116 LPAVILKTFLRELPEPLLTFDLYPHVVGF--LNIDESQRVPATLQVLQTLPEENYQVLRF 173
Query: 279 IVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHS 338
+ FL +I SD NKMT NLAVVF PNL+WA ++ ++L AI+PIN+F F+ ++
Sbjct: 174 LTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWA-KDAAITLKAINPINTFTKFLLDHQGE 232
Query: 339 IF 340
+F
Sbjct: 233 LF 234
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|B Chain B, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|C Chain C, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 199
Score = 178 bits (451), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 99/198 (50%), Positives = 133/198 (67%), Gaps = 8/198 (4%)
Query: 147 PTQQFGASLQHIKDNNGGDVIAPI-LRQCVDYLSQPDALETEGLFRRSASVALVRQCQTA 205
P QQFG SLQH+++ N PI LR+ V YL Q AL TEG+FRRSA+ +VR+ Q
Sbjct: 6 PNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYL-QAHALTTEGIFRRSANTQVVREVQQK 64
Query: 206 CNNGEPILF--HNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKIL 263
N G P+ F +N++HL AV+LKTFLREL EPLLT+DLY ++ F LN DE R L
Sbjct: 65 YNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGF--LNIDESQRVPATL 122
Query: 264 -ILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAI 322
+L+ LP +NY VL+++ FL +I SD NKMT NLAVVF PNL+WA ++ ++L AI
Sbjct: 123 QVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWA-KDAAITLKAI 181
Query: 323 SPINSFVYFMFNNYHSIF 340
+PIN+F F+ ++ +F
Sbjct: 182 NPINTFTKFLLDHQGELF 199
>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX
Length = 203
Score = 177 bits (450), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 99/198 (50%), Positives = 133/198 (67%), Gaps = 8/198 (4%)
Query: 147 PTQQFGASLQHIKDNNGGDVIAPI-LRQCVDYLSQPDALETEGLFRRSASVALVRQCQTA 205
P QQFG SLQH+++ N PI LR+ V YL Q AL TEG+FRRSA+ +VR+ Q
Sbjct: 2 PNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYL-QAHALTTEGIFRRSANTQVVREVQQK 60
Query: 206 CNNGEPILF--HNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKIL 263
N G P+ F +N++HL AV+LKTFLREL EPLLT+DLY ++ F LN DE R L
Sbjct: 61 YNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGF--LNIDESQRVPATL 118
Query: 264 -ILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAI 322
+L+ LP +NY VL+++ FL +I SD NKMT NLAVVF PNL+WA ++ ++L AI
Sbjct: 119 QVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWA-KDAAITLKAI 177
Query: 323 SPINSFVYFMFNNYHSIF 340
+PIN+F F+ ++ +F
Sbjct: 178 NPINTFTKFLLDHQGELF 195
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap
Length = 234
Score = 177 bits (450), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 149/234 (63%), Gaps = 12/234 (5%)
Query: 111 IPRQVIEHDERLTAKLSKGSVLPTPLTSSVTNLTYSPTQQFGASLQHIKDNNGGDVIAPI 170
IPRQV+++D+ L K ++ S P + P QQFG SLQH+++ N PI
Sbjct: 1 IPRQVLKYDDFL--KSTQKS--PATAPKPMPPRPPLPNQQFGVSLQHLQEKNPEQEPIPI 56
Query: 171 -LRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILF--HNDIHLAAVLLKT 227
LR+ V YL Q AL TEG+F RSA+ +VR+ Q N G P+ F +N++HL AV+LKT
Sbjct: 57 VLRETVAYL-QAHALTTEGIFARSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILKT 115
Query: 228 FLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKIL-ILEKLPTDNYTVLKYIVTFLSKI 286
FLREL EPLLT+DLY ++ F LN DE R L +L+ LP +NY VL+++ FL +I
Sbjct: 116 FLRELPEPLLTFDLYPHVVGF--LNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQI 173
Query: 287 EDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIF 340
SD NKMT NLAVVF PNL+WA ++ ++L AI+PIN+F F+ ++ +F
Sbjct: 174 SAHSDQNKMTNTNLAVVFGPNLLWA-KDAAITLKAINPINTFTKFLLDHQGELF 226
>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 198
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/198 (50%), Positives = 132/198 (66%), Gaps = 8/198 (4%)
Query: 147 PTQQFGASLQHIKDNNGGDVIAPI-LRQCVDYLSQPDALETEGLFRRSASVALVRQCQTA 205
P QQFG SLQH+++ N PI LR+ V YL Q AL TEG+FRRSA+ +VR+ Q
Sbjct: 5 PNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYL-QAHALTTEGIFRRSANTQVVREVQQK 63
Query: 206 CNNGEPILF--HNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKIL 263
N G P+ F +N +HL AV+LKTFLREL EPLLT+DLY ++ F LN DE R L
Sbjct: 64 YNMGLPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGF--LNIDESQRVPATL 121
Query: 264 -ILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAI 322
+L+ LP +NY VL+++ FL +I SD NKMT NLAVVF PNL+WA ++ ++L AI
Sbjct: 122 QVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWA-KDAAITLKAI 180
Query: 323 SPINSFVYFMFNNYHSIF 340
+PIN+F F+ ++ +F
Sbjct: 181 NPINTFTKFLLDHQGELF 198
>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 201
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 7/197 (3%)
Query: 147 PTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTAC 206
P Q FG SL +I +N+ ++ P+L +L+Q L T+G+FR+SA+V R+ +
Sbjct: 9 PGQLFGISLPNICEND--NLPKPVLDMLF-FLNQKGPL-TKGIFRQSANVKSCRELKEKL 64
Query: 207 NNG-EPILFHNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILIL 265
N+G E L I + A +LK FLR + + + DLYD + DE +L
Sbjct: 65 NSGVEVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLL 124
Query: 266 EKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNS--QLSLSAIS 323
++LP N +L+Y+ L IE S N+MT NLAV AP+++W P +S +L
Sbjct: 125 DQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSILWPPASSSPELENEFTK 184
Query: 324 PINSFVYFMFNNYHSIF 340
++ + F+ N IF
Sbjct: 185 KVSLLIQFLIENCLRIF 201
>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|B Chain B, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|C Chain C, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|D Chain D, Crystal Structure Of The Rhogap Domain Of Arhgap11a
Length = 271
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
Query: 182 DALETEGLFRRSASVALVRQCQTACNNGEPILFHNDIHLAAVLLKTFLRELDEPLLTYDL 241
D + TEGLFR+S SV ++ + ++GE L A LLK F REL EP+L DL
Sbjct: 96 DHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGLLKQFFRELPEPILPADL 155
Query: 242 YDEILLFPTLNKDERSRYVKILILEKLPTDNYT-VLKYIVTFLSKIEDRSDLNKMTWNNL 300
++ +L L +E+++ L+L L D+ VL+Y FL + RS NKM +NL
Sbjct: 156 HEALLKAQQLGTEEKNKAT--LLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNL 213
Query: 301 AVVFAPNLI 309
AV+FAPNL+
Sbjct: 214 AVIFAPNLL 222
>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|B Chain B, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|C Chain C, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|D Chain D, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
Length = 214
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 14/200 (7%)
Query: 149 QQFGASLQHIKDNNGGDVIAP-ILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACN 207
Q FG+ L + + V P ++QC++ + + L+ +G++R S ++A +++ + N
Sbjct: 18 QIFGSHLHKVCERENSTV--PWFVKQCIEAVEK-RGLDVDGIYRVSGNLATIQKLRFIVN 74
Query: 208 NGEPILFHN----DIHLAAVLLKTFLRELDEPLLTYDLYDEIL-LFPTLNKDERSRYVKI 262
E + + DIH+ LK F REL EPL Y +++ + + + R VK
Sbjct: 75 QEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKS 134
Query: 263 LILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAI 322
L+ +KLP N +K + L+KI ++ N M+ +L +VF P L+ A ++ AI
Sbjct: 135 LV-QKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLLRA--ENETGNMAI 191
Query: 323 SPI--NSFVYFMFNNYHSIF 340
+ N M + Y IF
Sbjct: 192 HMVYQNQIAELMLSEYSKIF 211
>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics
pdb|3IUG|B Chain B, Crystal Structure Of The Rhogap Domain Of Rics
Length = 229
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 93/181 (51%), Gaps = 14/181 (7%)
Query: 137 TSSVTNLTYSPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASV 196
+S NL + + FG L N+G +V +L+ C ++ + ++ G++R S
Sbjct: 8 SSGRENLYFQGERVFGCDLGEHLLNSGFEV-PQVLQSCTAFIERYGIVD--GIYRLSGVA 64
Query: 197 ALVRQCQTACNN-------GEPILFHNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFP 249
+ +++ + ++ EP + DIH L K + REL PLLTY LY++
Sbjct: 65 SNIQRLRHEFDSEHVPDLTKEPYV--QDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAV 122
Query: 250 TLNKDERSRYVKIL-ILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNL 308
+ DE R +KI ++++LP +Y L++++ LS + D + M NLA+V+APNL
Sbjct: 123 SAATDEE-RLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNL 181
Query: 309 I 309
+
Sbjct: 182 L 182
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|B Chain B, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|C Chain C, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|D Chain D, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
Length = 246
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 167 IAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPI-LFHND--IHLAAV 223
I + +C++Y+ + L TEG++R S + + + Q + + L D ++ A
Sbjct: 68 IPIFIERCIEYI-EATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAG 126
Query: 224 LLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFL 283
+K+F EL +PL+ Y++ +++ +N E+ + +L+K P +N+ V KY+++ L
Sbjct: 127 AMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHL 186
Query: 284 SKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSA 321
+K+ + +N MT NL++ F P L+ ++ +L+A
Sbjct: 187 NKVSHNNKVNLMTSENLSICFWPTLMRPDFSTMDALTA 224
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 9/143 (6%)
Query: 183 ALETEGLFRRSASVALVRQCQTACN-NGEPILF----HNDIHLAAVLLKTFLRELDEPLL 237
L++EGL+R S + + A + +GE + DI++ LK + R+L P++
Sbjct: 303 GLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIITGALKLYFRDLPIPVI 362
Query: 238 TYDLYDEILLFPTL-NKDERSRYV-KILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKM 295
TYD Y + + + N DER V ++L+L LP +Y L+Y++ L K+ N M
Sbjct: 363 TYDTYSKFIDAAKISNADERLEAVHEVLML--LPPAHYETLRYLMIHLKKVTMNEKDNFM 420
Query: 296 TWNNLAVVFAPNLIWAPVNSQLS 318
NL +VF P L+ P +S L+
Sbjct: 421 NAENLGIVFGPTLMRPPEDSTLT 443
>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain
Length = 228
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 33/188 (17%)
Query: 128 KGSVLPTPLTSSVTNLTYSPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETE 187
+GSV PLT +V Q ++++++++ C+D +
Sbjct: 17 QGSVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNH------------CLDQV--------- 55
Query: 188 GLFRRSA---SVALVRQCQTA---CNNGEPILFHNDIHLAAVLLKTFLRELDEPLLTYDL 241
GLFR+S + +RQ C N E + A +LK + R+L EPL+T L
Sbjct: 56 GLFRKSGVKSRIQALRQMNEGAIDCVNYE----GQSAYDVADMLKQYFRDLPEPLMTNKL 111
Query: 242 YDEIL-LFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNL 300
+ L ++ + KD+R + +K I+ LP +N VL+ ++ FLS + N+MT NL
Sbjct: 112 SETFLQIYQYVPKDQRLQAIKAAIM-LLPDENREVLQTLLYFLSDVTAAVKENQMTPTNL 170
Query: 301 AVVFAPNL 308
AV AP+L
Sbjct: 171 AVCLAPSL 178
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho
Gtpase Activating Protein 5 Variant
Length = 209
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 8/163 (4%)
Query: 151 FGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGE 210
FG LQ + I + +CV+++ + L TEGL+R S + Q +
Sbjct: 13 FGMPLQDLV--TAEKPIPLFVEKCVEFI-EDTGLCTEGLYRVSGNKTDQDNIQKQFDQDH 69
Query: 211 PI-LFHNDIHLAAVL--LKTFLRELDEPLLTYDLYDEILLFPTL-NKDERSRYVKILILE 266
I L ++ + AV LK F +L +PL+ Y L+ E+L + +K ER +K I++
Sbjct: 70 NINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALK-EIVK 128
Query: 267 KLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLI 309
K NY V +Y++T L+++ + +N MT +NL++ F P L+
Sbjct: 129 KFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLM 171
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap
Domain From Human Rho Gtpase Activating Protein 5
Variant
Length = 219
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 8/163 (4%)
Query: 151 FGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGE 210
FG LQ + I + +CV+++ + L TEGL+R S + Q +
Sbjct: 23 FGMPLQDLV--TAEKPIPLFVEKCVEFI-EDTGLCTEGLYRVSGNKTDQDNIQKQFDQDH 79
Query: 211 PI-LFHNDIHLAAVL--LKTFLRELDEPLLTYDLYDEILLFPTL-NKDERSRYVKILILE 266
I L ++ + AV LK F +L +PL+ Y L+ E+L + +K ER +K I++
Sbjct: 80 NINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALK-EIVK 138
Query: 267 KLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLI 309
K NY V +Y++T L+++ + +N MT +NL++ F P L+
Sbjct: 139 KFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLM 181
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 183 ALETEGLFRRSASVALVRQCQTACN-NGEP----ILFHNDIHLAAVLLKTFLRELDEPLL 237
L +EGL+R S L+ + A + +GE + + DI++ LK + R+L PL+
Sbjct: 300 GLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLI 359
Query: 238 TYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTW 297
TYD Y + + + + L+ LP + L+Y++ L ++ N M
Sbjct: 360 TYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNA 419
Query: 298 NNLAVVFAPNLIWAPVNSQLSLSAISPINSFVY 330
NL +VF P L+ +P L A++ +N Y
Sbjct: 420 ENLGIVFGPTLMRSP-----ELDAMAALNDIRY 447
>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin
Length = 202
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 183 ALETEGLFRRSASVALVRQCQTACN-NGE----PILFHNDIHLAAVLLKTFLRELDEPLL 237
L +EGL+R S L+ + A + +GE + + DI++ LK + R+L PL+
Sbjct: 39 GLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLI 98
Query: 238 TYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTW 297
TYD Y + + + + L+ LP + L+Y++ L ++ N M
Sbjct: 99 TYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNA 158
Query: 298 NNLAVVFAPNLIWAPVNSQLSLSAISPINSFVY 330
NL +VF P L+ +P L A++ +N Y
Sbjct: 159 ENLGIVFGPTLMRSP-----ELDAMAALNDIRY 186
>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase
Regulator Associated With Focal Adhesion Kinase
Length = 231
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 10/179 (5%)
Query: 170 ILRQCVDYLSQPDALETEGLFRRSASVALVRQC-------QTACNNGEPILFHNDIHLAA 222
I+++C+ + + + +GL+R + V++ +TA I +I
Sbjct: 40 IIKKCI-HAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTIT 98
Query: 223 VLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKI-LILEKLPTDNYTVLKYIVT 281
LKT+LR L PL+ Y + L E SR +I ++ +LP N +L ++
Sbjct: 99 SALKTYLRMLPGPLMMYQFQRSFIKAAKLENQE-SRVSEIHSLVHRLPEKNRQMLHLLMN 157
Query: 282 FLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIF 340
L+K+ D N MT NL VVF P L+ + ++ I N + + N+ IF
Sbjct: 158 HLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETVAAIMDIKFQNIVIEILIENHEKIF 216
>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating
Protein 1 (Racgap1) Mgcracgap
Length = 201
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 5/147 (3%)
Query: 166 VIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGE--PILFH-NDIHLAA 222
+I I+ CV+ + Q ET GL+R S V++ + + P+L +DIH
Sbjct: 16 MIPSIVVHCVNEIEQRGLTET-GLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAIC 74
Query: 223 VLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTF 282
LLK FLR L EPLLT+ L + + ++ S + +LP N L +++
Sbjct: 75 SLLKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIH 134
Query: 283 LSKIEDRSDLNKMTWNNLAVVFAPNLI 309
L ++ +S KM NLA VF P ++
Sbjct: 135 LQRVA-QSPHTKMDVANLAKVFGPTIV 160
>pdb|2QV2|A Chain A, A Role Of The Lowe Syndrome Protein Ocrl In Early Steps Of
The Endocytic Pathway
Length = 342
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 6/132 (4%)
Query: 183 ALETEGLFRRSASVALVRQCQTACNNGEPILFHNDIHLAAVLLKTFLRELDEPLLTYDLY 242
A E LF+ ++Q + P H A L FL L EP++ Y+LY
Sbjct: 190 ACHQEDLFQTPGMQEELQQIIDCLDTSIPETIPGSNHSVAEALLIFLEALPEPVICYELY 249
Query: 243 DEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAV 302
L+ R + +I +LP + V +Y++ FL ++ S+ N + N +A
Sbjct: 250 QR-----CLDSAYDPRICRQVI-SQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIAT 303
Query: 303 VFAPNLIWAPVN 314
+F L+ P N
Sbjct: 304 LFTSLLLRPPPN 315
>pdb|3QIS|A Chain A, Recognition Of The F&h Motif By The Lowe Syndrome Protein
Ocrl
Length = 366
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 6/132 (4%)
Query: 183 ALETEGLFRRSASVALVRQCQTACNNGEPILFHNDIHLAAVLLKTFLRELDEPLLTYDLY 242
A E LF+ ++Q + P H A L FL L EP++ Y+LY
Sbjct: 214 ACHQEDLFQTPGMQEELQQIIDCLDTSIPETIPGSNHSVAEALLIFLEALPEPVICYELY 273
Query: 243 DEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAV 302
L+ R + +I +LP + V +Y++ FL ++ S+ N + N +A
Sbjct: 274 QR-----CLDSAYDPRICRQVI-SQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIAT 327
Query: 303 VFAPNLIWAPVN 314
+F L+ P N
Sbjct: 328 LFTSLLLRPPPN 339
>pdb|1PBW|A Chain A, Structure Of Bcr-Homology (Bh) Domain
pdb|1PBW|B Chain B, Structure Of Bcr-Homology (Bh) Domain
Length = 216
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 17/154 (11%)
Query: 165 DVIAPILRQCVDYLSQPDALETEGLFR--RSASVALVRQ---CQTACNNGEPILFHNDIH 219
D+ P+L + V+ + + LE L+R S+++A +RQ C T + E I D+H
Sbjct: 23 DIAPPLLIKLVEAIEK-KGLECSTLYRTQSSSNLAELRQLLDCDTPSVDLEMI----DVH 77
Query: 220 LAAVLLKTFLRELDEPLLTYDLYDEIL-LFPTLNKDERSRYV----KILILEKLPTDNYT 274
+ A K +L +L P++ +Y E++ L P + E Y+ K++ +P +
Sbjct: 78 VLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSE--EYIQLLKKLIRSPSIPHQYWL 135
Query: 275 VLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNL 308
L+Y++ K+ S N + L+ +F+P L
Sbjct: 136 TLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPML 169
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 14/61 (22%)
Query: 227 TFLRELDEPLLTYDLYDEILLFPTLNK------DERSRYVKILILEK------LPTDNYT 274
TF+REL T+D DE++L PT N+ +E S V IL+L+K LP+ ++T
Sbjct: 86 TFVRELRS--RTFDSSDEVILKPTGNQLTVEFLEENSFSVPILVLKKDGLGMTLPSPSFT 143
Query: 275 V 275
V
Sbjct: 144 V 144
>pdb|2WWU|A Chain A, Crystal Structure Of The Catalytic Domain Of Phd Finger
Protein 8
Length = 371
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 14/61 (22%)
Query: 227 TFLRELDEPLLTYDLYDEILLFPTLNK------DERSRYVKILILEK------LPTDNYT 274
TF+REL T+D DE++L PT N+ +E S V IL+L+K LP+ ++T
Sbjct: 10 TFVRELRS--RTFDSSDEVILKPTGNQLTVEFLEENSFSVPILVLKKDGLGMTLPSPSFT 67
Query: 275 V 275
V
Sbjct: 68 V 68
>pdb|4DO0|A Chain A, Crystal Structure Of Human Phf8 In Complex With Daminozide
Length = 374
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 14/61 (22%)
Query: 227 TFLRELDEPLLTYDLYDEILLFPTLNK------DERSRYVKILILEK------LPTDNYT 274
TF+REL T+D DE++L PT N+ +E S V IL+L+K LP+ ++T
Sbjct: 13 TFVRELRS--RTFDSSDEVILKPTGNQLTVEFLEENSFSVPILVLKKDGLGMTLPSPSFT 70
Query: 275 V 275
V
Sbjct: 71 V 71
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 41/106 (38%), Gaps = 8/106 (7%)
Query: 135 PLTSSVTNLTYSPTQQFGASLQHI-KDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRS 193
P T N +P Q+ G ++ I KD GG++ P L+ DYL+Q E G
Sbjct: 235 PATIYCNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVG----- 289
Query: 194 ASVALVRQCQTACNNGEPILFHNDIHLAAVLLKTFLRELDEPLLTY 239
A V C N LF D T L D P+L Y
Sbjct: 290 AEVDHYESCNFDINRN--FLFAGDWMKPYHTAVTDLLNQDLPILVY 333
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 41/106 (38%), Gaps = 8/106 (7%)
Query: 135 PLTSSVTNLTYSPTQQFGASLQHI-KDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRS 193
P T N +P Q+ G ++ I KD GG++ P L+ DYL+Q E G
Sbjct: 235 PATIYCNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVG----- 289
Query: 194 ASVALVRQCQTACNNGEPILFHNDIHLAAVLLKTFLRELDEPLLTY 239
A V C N LF D T L D P+L Y
Sbjct: 290 AEVDHYESCNFDINRN--FLFAGDWMKPYHTAVTDLLNQDLPILVY 333
>pdb|3K3N|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Human
Phf8
pdb|3K3O|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Human
Phf8 Complexed With Alpha-Ketoglutarate
Length = 371
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 14/61 (22%)
Query: 227 TFLRELDEPLLTYDLYDEILLFPTLNK------DERSRYVKILILEK------LPTDNYT 274
TF+REL T+D DE++L PT N+ +E S V IL+L+K LP+ ++T
Sbjct: 2 TFVRELRSR--TFDSSDEVILKPTGNQLTVEFLEENSFSVPILVLKKDGLGMTLPSPSFT 59
Query: 275 V 275
V
Sbjct: 60 V 60
>pdb|4GFP|A Chain A, 2.7 Angstrom Resolution Structure Of 3-Phosphoshikimate 1-
Carboxyvinyltransferase (Aroa) From Coxiella Burnetii In
A Second Conformational State
Length = 462
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 108 QLCIPR-QVIEHDERLTAKLSKGSVLPTPLTSSVTNLTY-SPTQQFGASLQHIKDNN 162
++C+P + I H L A +++G NL S QQ GAS+Q I+D N
Sbjct: 38 EICVPGDKSISHRAVLLAAIAEGQTQVDGFLMGADNLAMVSALQQMGASIQVIEDEN 94
>pdb|3ROI|A Chain A, 2.20 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
pdb|3ROI|B Chain B, 2.20 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
pdb|3SLH|A Chain A, 1.70 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Shikimate-3-Phosphate And Glyphosate
pdb|3SLH|B Chain B, 1.70 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Shikimate-3-Phosphate And Glyphosate
pdb|3SLH|C Chain C, 1.70 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Shikimate-3-Phosphate And Glyphosate
pdb|3SLH|D Chain D, 1.70 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Shikimate-3-Phosphate And Glyphosate
pdb|4EGR|A Chain A, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|B Chain B, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|C Chain C, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|D Chain D, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|E Chain E, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|F Chain F, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
Length = 441
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 108 QLCIPR-QVIEHDERLTAKLSKGSVLPTPLTSSVTNLTY-SPTQQFGASLQHIKDNN 162
++C+P + I H L A +++G NL S QQ GAS+Q I+D N
Sbjct: 17 EICVPGDKSISHRAVLLAAIAEGQTQVDGFLMGADNLAMVSALQQMGASIQVIEDEN 73
>pdb|3TR1|A Chain A, Structure Of A 3-Phosphoshikimate
1-Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
Length = 441
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 108 QLCIPR-QVIEHDERLTAKLSKGSVLPTPLTSSVTNLT-YSPTQQFGASLQHIKDNN 162
++C+P + I H L A +++G NL S QQ GAS+Q I+D N
Sbjct: 17 EICVPGDKSISHRAVLLAAIAEGQTQVDGFLXGADNLAXVSALQQXGASIQVIEDEN 73
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
pdb|3G1N|B Chain B, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
Length = 388
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 38 NKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKA 81
N + W W A R+FD+ +A +L TG +V LQ F A
Sbjct: 288 NSIQIQWFWRALRSFDQAD----RAKFLQFVTGTSKVPLQGFAA 327
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain
Length = 405
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 38 NKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKA 81
N + W W A R+FD + +A +L TG +V LQ F A
Sbjct: 305 NSIQIQWFWRALRSFD----QADRAKFLQFVTGTSKVPLQGFAA 344
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,908,649
Number of Sequences: 62578
Number of extensions: 396801
Number of successful extensions: 778
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 724
Number of HSP's gapped (non-prelim): 34
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)