Query psy12161
Match_columns 342
No_of_seqs 249 out of 1475
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 20:17:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4406|consensus 100.0 6.8E-72 1.5E-76 513.9 21.1 327 8-341 114-446 (467)
2 cd04372 RhoGAP_chimaerin RhoGA 100.0 4.9E-44 1.1E-48 313.6 19.0 187 151-340 1-194 (194)
3 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 9.3E-44 2E-48 312.4 19.2 191 147-340 2-195 (195)
4 cd04390 RhoGAP_ARHGAP22_24_25 100.0 9.7E-43 2.1E-47 306.8 19.3 190 149-340 1-199 (199)
5 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 1E-42 2.2E-47 304.8 18.4 187 150-341 1-189 (192)
6 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 1.8E-42 3.9E-47 308.5 18.9 191 150-342 1-207 (216)
7 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 1.7E-42 3.7E-47 308.6 18.2 192 148-342 2-216 (220)
8 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 2.9E-42 6.3E-47 299.3 18.1 175 151-341 1-180 (182)
9 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 3E-42 6.5E-47 306.3 18.5 191 151-342 1-209 (213)
10 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 3.7E-42 8E-47 300.0 18.2 182 151-335 1-187 (187)
11 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 6.2E-42 1.3E-46 302.5 19.6 191 148-341 2-200 (203)
12 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 3.2E-42 6.8E-47 300.3 16.8 183 149-335 1-188 (188)
13 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 6.5E-42 1.4E-46 301.6 18.6 190 150-342 1-197 (202)
14 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 1.1E-41 2.4E-46 298.4 17.3 183 149-335 1-195 (195)
15 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 2.7E-41 5.9E-46 296.8 19.0 189 150-340 1-196 (196)
16 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 2.1E-41 4.6E-46 303.0 17.7 187 150-339 1-224 (225)
17 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 3.5E-41 7.6E-46 296.5 18.2 182 151-335 1-200 (200)
18 cd04407 RhoGAP_myosin_IXB RhoG 100.0 5.8E-41 1.3E-45 291.7 18.6 180 151-334 1-185 (186)
19 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 4.9E-41 1.1E-45 294.6 17.9 185 151-340 1-192 (192)
20 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 1.5E-40 3.3E-45 293.2 17.9 177 164-342 6-202 (206)
21 cd04406 RhoGAP_myosin_IXA RhoG 100.0 1.9E-40 4.2E-45 288.4 16.8 179 151-333 1-184 (186)
22 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 2E-40 4.3E-45 292.7 17.0 182 151-335 1-203 (203)
23 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 4E-40 8.7E-45 287.8 18.4 184 149-335 1-189 (189)
24 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 5E-40 1.1E-44 285.9 18.3 177 151-335 1-181 (185)
25 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 3.5E-40 7.7E-45 288.4 17.2 177 150-342 1-189 (190)
26 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 7.3E-40 1.6E-44 286.7 18.0 164 151-316 1-168 (196)
27 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 7.3E-40 1.6E-44 290.3 18.2 183 151-335 1-211 (211)
28 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 1.1E-39 2.5E-44 288.1 17.6 182 151-342 1-198 (208)
29 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 2.7E-39 6E-44 285.1 19.1 186 151-337 1-207 (207)
30 cd04377 RhoGAP_myosin_IX RhoGA 100.0 3.8E-39 8.2E-44 280.8 19.2 181 151-335 1-186 (186)
31 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 4.4E-39 9.5E-44 280.2 18.1 179 151-335 1-187 (187)
32 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 1.7E-38 3.6E-43 281.5 17.7 187 151-341 1-209 (212)
33 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 2.3E-38 5.1E-43 276.6 17.7 175 163-339 13-192 (193)
34 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 1.8E-37 4E-42 269.6 18.6 179 152-336 2-184 (184)
35 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 2E-37 4.3E-42 272.4 17.3 168 166-335 27-203 (203)
36 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 4.5E-37 9.8E-42 267.7 17.1 167 163-335 11-183 (200)
37 smart00324 RhoGAP GTPase-activ 100.0 3.9E-34 8.5E-39 247.0 18.0 169 166-336 2-174 (174)
38 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 2.6E-33 5.7E-38 250.2 16.2 164 147-316 9-198 (220)
39 cd00159 RhoGAP RhoGAP: GTPase- 100.0 4.6E-32 1E-36 232.4 17.5 167 168-335 1-169 (169)
40 KOG4407|consensus 100.0 1.3E-32 2.9E-37 278.7 15.4 195 145-341 1152-1355(1973)
41 KOG2200|consensus 100.0 1.3E-32 2.9E-37 262.8 13.9 194 146-342 296-512 (674)
42 KOG1450|consensus 100.0 4E-31 8.7E-36 259.2 15.8 196 144-341 450-649 (650)
43 KOG4269|consensus 100.0 1.6E-31 3.5E-36 264.3 12.8 168 145-312 894-1069(1112)
44 KOG4270|consensus 100.0 1.3E-30 2.8E-35 255.0 12.5 194 146-340 142-343 (577)
45 PF00620 RhoGAP: RhoGAP domain 100.0 8.7E-31 1.9E-35 220.7 9.5 143 168-312 1-147 (151)
46 KOG2710|consensus 100.0 1.3E-28 2.9E-33 232.3 15.5 178 163-342 90-293 (412)
47 KOG1451|consensus 99.9 7.6E-28 1.7E-32 229.6 10.6 171 169-341 390-568 (812)
48 KOG1117|consensus 99.9 2E-26 4.3E-31 227.5 13.3 171 163-342 723-898 (1186)
49 KOG1453|consensus 99.9 5E-26 1.1E-30 238.6 11.9 187 150-340 602-797 (918)
50 KOG3564|consensus 99.9 8.9E-24 1.9E-28 197.9 17.7 178 155-335 351-533 (604)
51 PF13716 CRAL_TRIO_2: Divergen 99.9 1.7E-24 3.6E-29 182.1 7.3 116 5-121 29-149 (149)
52 KOG1452|consensus 99.8 2.2E-20 4.7E-25 167.5 11.0 192 145-338 179-379 (442)
53 KOG4724|consensus 99.8 1.4E-19 2.9E-24 175.9 6.4 191 145-341 77-271 (741)
54 KOG4271|consensus 99.8 6.7E-19 1.5E-23 176.2 5.8 160 147-309 914-1076(1100)
55 cd04405 RhoGAP_BRCC3-like RhoG 99.7 5.6E-17 1.2E-21 142.0 11.6 182 149-342 20-230 (235)
56 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.7 7.5E-16 1.6E-20 133.7 11.7 144 167-313 6-166 (198)
57 smart00516 SEC14 Domain in hom 99.3 1.7E-11 3.6E-16 103.4 10.1 107 4-113 35-151 (158)
58 cd00170 SEC14 Sec14p-like lipi 99.2 1.1E-10 2.4E-15 97.4 10.0 103 7-109 40-150 (157)
59 KOG3565|consensus 99.2 3.5E-11 7.6E-16 121.4 7.0 148 163-312 214-366 (640)
60 KOG4370|consensus 99.1 6.9E-11 1.5E-15 110.4 7.1 149 163-312 67-257 (514)
61 PF08101 DUF1708: Domain of un 98.6 4.1E-07 8.8E-12 87.9 11.5 145 166-313 7-168 (420)
62 KOG4724|consensus 98.3 6.2E-07 1.3E-11 88.6 4.0 164 146-312 412-589 (741)
63 PF00650 CRAL_TRIO: CRAL/TRIO 97.9 1.3E-05 2.9E-10 67.2 5.0 86 23-108 61-151 (159)
64 KOG1470|consensus 97.4 0.00054 1.2E-08 63.8 8.3 102 6-108 127-234 (324)
65 KOG1471|consensus 97.2 0.0014 2.9E-08 61.9 8.5 88 22-109 158-249 (317)
66 KOG1453|consensus 96.0 0.0047 1E-07 66.2 3.4 162 150-312 462-668 (918)
67 KOG4271|consensus 94.5 0.059 1.3E-06 56.2 5.5 163 145-310 351-536 (1100)
68 KOG1449|consensus 93.8 0.015 3.3E-07 57.5 -0.4 60 281-341 2-71 (670)
69 KOG1449|consensus 92.0 0.011 2.3E-07 58.6 -4.3 166 148-340 207-386 (670)
70 PF10928 DUF2810: Protein of u 66.0 3.3 7.2E-05 27.5 1.1 17 54-70 20-36 (54)
71 PRK11020 hypothetical protein; 47.7 11 0.00023 29.7 1.3 16 55-70 84-99 (118)
72 KOG4370|consensus 30.2 71 0.0015 31.3 4.1 31 217-247 119-149 (514)
73 PF12719 Cnd3: Nuclear condens 29.5 3.8E+02 0.0082 24.7 9.0 114 170-289 84-208 (298)
74 PF02350 Epimerase_2: UDP-N-ac 25.4 1.2E+02 0.0025 29.0 4.8 48 21-70 178-225 (346)
75 PF10340 DUF2424: Protein of u 21.0 80 0.0017 30.6 2.7 41 23-69 121-163 (374)
76 PF09949 DUF2183: Uncharacteri 20.9 1.6E+02 0.0035 22.7 3.9 45 11-65 53-97 (100)
77 PF07064 RIC1: RIC1; InterPro 20.6 2.5E+02 0.0054 25.7 5.7 96 167-288 156-251 (258)
No 1
>KOG4406|consensus
Probab=100.00 E-value=6.8e-72 Score=513.88 Aligned_cols=327 Identities=49% Similarity=0.822 Sum_probs=306.5
Q ss_pred HHHHHHHHHhhhhccCCeEEEEEecCCCCCCCCCHHHHHHHHHHhhHHhhhccceEEEecCChhHHHHHHHHHhHhhHhh
Q psy12161 8 ATQTQYTYVLDKFVEQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKAAISAKF 87 (342)
Q Consensus 8 ~~~~y~~~~l~~~~~~~y~~vy~~~~~~~~~~p~~~wl~~~y~~l~~~~~knlk~~yivhp~~~~k~~~~~~~~~~s~k~ 87 (342)
+++.|++.++|++|+++|++||||+|+.+.|+|+++|+.++|+.+||+++||+|++|||||+||+|++|.+++|++|.||
T Consensus 114 ~li~~~v~~id~~Ve~DYt~vYfh~gl~s~nkp~l~~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF 193 (467)
T KOG4406|consen 114 RLISYLVYTIDKYVENDYTLVYFHHGLPSDNKPYLQLLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKF 193 (467)
T ss_pred HHHHHHHHHHHHHHhccceeeehhcCCcccccchHHHHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceeeccchHHHHhcccccccCCChHHHHHHHHHHhhhcCCCCCCC-CCCCCCCcCCCCCCCccCCChhHhhhhC-CCC
Q psy12161 88 GRKMIYINYLHELKSHLNLDQLCIPRQVIEHDERLTAKLSKGSVLPT-PLTSSVTNLTYSPTQQFGASLQHIKDNN-GGD 165 (342)
Q Consensus 88 ~~Ki~~~~~L~~L~~~i~~~ql~iP~~v~~~d~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~FG~~L~~l~~~~-~~~ 165 (342)
.+|++|+++++||.++|..+++.+|..|++||..+.... ++.++++ ..+++++ +.++++||++|+.+.+.. .+.
T Consensus 194 ~rKi~Y~n~lseL~~~l~l~rL~lP~~v~~~D~~~~s~~-~~~a~~p~~~~~pr~---pl~t~qFgvpLqf~~~~~~e~~ 269 (467)
T KOG4406|consen 194 TRKIIYFNSLSELFEALKLNRLKLPPEVLKHDDKLLSKA-KTPAPPPEKMTPPRP---PLPTQQFGVPLQFIPEKNPEGE 269 (467)
T ss_pred hceeEEeehHHHHHHhhhhhhhcCChhhhhhhhcccccc-cCCCCCcccCCCCCC---CCchhhcCccHHHhcccCcccC
Confidence 999999999999999999999999999999999987653 2222222 3355555 899999999999998876 578
Q ss_pred CCcHHHHHHHHHHhCCCC-cccccceeccccHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHHHHHhCCCCCCChHhH
Q psy12161 166 VIAPILRQCVDYLSQPDA-LETEGLFRRSASVALVRQCQTACNNGEPILFHN--DIHLAAVLLKTFLRELDEPLLTYDLY 242 (342)
Q Consensus 166 ~iP~vl~~~i~~l~~~~g-l~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~--d~~~va~llK~fLr~Lp~pLi~~~~~ 242 (342)
.||++++.|+++|.. +| +++||+||+|+|...+.++++.+++|++++++. |+|+.|+++|.|+|+||+||++.++|
T Consensus 270 ~iPpiv~~tV~~L~~-~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~~~~h~~avllKtF~R~LpePL~t~~~y 348 (467)
T KOG4406|consen 270 SIPPIVRSTVEYLQA-HGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVYKDLHAPAVLLKTFLRSLPEPLLTFRLY 348 (467)
T ss_pred CCCcHHHHHhhhhhc-cceecccceeccccCccchHHHHHHhcCCCcccHHHhccchhhHHHHHHHHhcCCcccchhhhh
Confidence 899999999999999 88 999999999999999999999999999999988 79999999999999999999999999
Q ss_pred HHHHccCCCChhHHHHHHHHHHHhh-CCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhcccCCCCCCCccchhh
Q psy12161 243 DEILLFPTLNKDERSRYVKILILEK-LPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSA 321 (342)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~ll~~-Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP~L~~~~~~~~~~~~~ 321 (342)
+.+....+.+..++.. .++++++. ||++|+.++++++.||.+|++|+.+|+||+.|||+||||+|+|+. +...++.+
T Consensus 349 ~~lt~~~~~~~~~~s~-s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~sNLa~vfGpnl~w~~-~~s~tl~q 426 (467)
T KOG4406|consen 349 ESLTGFSNVDKSLRSS-STDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTASNLAVVFGPNLLWAQ-DESLTLKQ 426 (467)
T ss_pred hhhhccccchHHhhhh-HHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhccccceeeecccccccc-cccccHHH
Confidence 9999988888777777 68888887 999999999999999999999999999999999999999999999 88899999
Q ss_pred hchHHHHHHHHHhccccccc
Q psy12161 322 ISPINSFVYFMFNNYHSIFI 341 (342)
Q Consensus 322 ~~~~~~~v~~lI~~~~~iF~ 341 (342)
..+++.|.+++|+||+++|.
T Consensus 427 ~npin~F~~~li~~~~~~f~ 446 (467)
T KOG4406|consen 427 INPINKFTKFLIEHYKKLFT 446 (467)
T ss_pred hccHHHHHHHHHHhhhhccC
Confidence 99999999999999999995
No 2
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=4.9e-44 Score=313.60 Aligned_cols=187 Identities=25% Similarity=0.440 Sum_probs=169.1
Q ss_pred cCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhc-CCCCCCCC----CHHHHHHHH
Q psy12161 151 FGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNN-GEPILFHN----DIHLAAVLL 225 (342)
Q Consensus 151 FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~-g~~~~~~~----d~~~va~ll 225 (342)
||+||+.++++ .+..||.++.+|+++|++ +|+++|||||++|+..+++++++.+|+ |...++.. |+|++|++|
T Consensus 1 FG~~L~~~~~~-~~~~iP~iv~~ci~~l~~-~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lL 78 (194)
T cd04372 1 YGCDLTTLVKA-HNTQRPMVVDMCIREIEA-RGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGAL 78 (194)
T ss_pred CCCChHHHHHH-cCCCCChHHHHHHHHHHH-cCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHH
Confidence 89999999998 567899999999999999 999999999999999999999999998 55566543 899999999
Q ss_pred HHHHHhCCCCCCChHhHHHHHccCCCChh-HHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhh
Q psy12161 226 KTFLRELDEPLLTYDLYDEILLFPTLNKD-ERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVF 304 (342)
Q Consensus 226 K~fLr~Lp~pLi~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vf 304 (342)
|.|||+||+||+|.+.|+.++++.+..+. ++.. .++.++.+||+.|+.+|++|+.||++|+.+++.||||+.|||+||
T Consensus 79 K~flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf 157 (194)
T cd04372 79 KLYFRDLPIPVITYDTYPKFIDAAKISNPDERLE-AVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVF 157 (194)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHH
Confidence 99999999999999999999997665544 4555 799999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCc-cchhhhchHHHHHHHHHhcccccc
Q psy12161 305 APNLIWAPVNSQ-LSLSAISPINSFVYFMFNNYHSIF 340 (342)
Q Consensus 305 gP~L~~~~~~~~-~~~~~~~~~~~~v~~lI~~~~~iF 340 (342)
||+|+|++.++. ..+.++...+.++++||+||++||
T Consensus 158 ~P~Ll~~~~~~~~~~~~~~~~~~~iv~~LI~~~~~iF 194 (194)
T cd04372 158 GPTLMRPPEDSALTTLNDMRYQILIVQLLITNEDVLF 194 (194)
T ss_pred hcccCCCCCccHHHHHHhHHHHHHHHHHHHHhhHhhC
Confidence 999999985443 345677788999999999999998
No 3
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=9.3e-44 Score=312.42 Aligned_cols=191 Identities=53% Similarity=0.901 Sum_probs=177.8
Q ss_pred CCCccCCChhHhhhhCC-CCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCC--CHHHHHH
Q psy12161 147 PTQQFGASLQHIKDNNG-GDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHN--DIHLAAV 223 (342)
Q Consensus 147 ~~~~FG~~L~~l~~~~~-~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~--d~~~va~ 223 (342)
|+++||+||+.++.+.+ +..||.++.+|++||++ +|+++|||||++|+..+++++++.+|+|+.+++++ |+|++|+
T Consensus 2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~-~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~ 80 (195)
T cd04404 2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQA-HALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLPAV 80 (195)
T ss_pred CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHH-cCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccccCHHHHHH
Confidence 57899999999998753 37899999999999999 99999999999999999999999999999888876 9999999
Q ss_pred HHHHHHHhCCCCCCChHhHHHHHccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHh
Q psy12161 224 LLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVV 303 (342)
Q Consensus 224 llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~v 303 (342)
+||.|||+||+||+|.+.|+.+..+.+.+..++.. .++.++.+||+.|+.+|.+++.||++|+.+++.|+||++|||+|
T Consensus 81 ~LK~~lr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~-~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~v 159 (195)
T cd04404 81 ILKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVE-RVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVV 159 (195)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHcCCHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhhee
Confidence 99999999999999999999999877666555666 79999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCCCccchhhhchHHHHHHHHHhcccccc
Q psy12161 304 FAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIF 340 (342)
Q Consensus 304 fgP~L~~~~~~~~~~~~~~~~~~~~v~~lI~~~~~iF 340 (342)
|||+|+|++ +....++++...+.++++||+||++||
T Consensus 160 faP~l~~~~-~~~~~l~~~~~~~~~~~~LI~~~~~iF 195 (195)
T cd04404 160 FGPNLLWAK-DASMSLSAINPINTFTKFLLDHQDEIF 195 (195)
T ss_pred eeccccCCC-CcccCHHHHHHHHHHHHHHHHhHHhhC
Confidence 999999998 556788888999999999999999998
No 4
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=9.7e-43 Score=306.83 Aligned_cols=190 Identities=32% Similarity=0.586 Sum_probs=168.5
Q ss_pred CccCCChhHhhhhC---CCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCC--CHHHHHH
Q psy12161 149 QQFGASLQHIKDNN---GGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHN--DIHLAAV 223 (342)
Q Consensus 149 ~~FG~~L~~l~~~~---~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~--d~~~va~ 223 (342)
++||+||++++.++ +...||.++.+|++||++ +|+++|||||++|+...++++++.+|+|+..++.. |+|++|+
T Consensus 1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~-~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~ 79 (199)
T cd04390 1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIRE-HGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVAS 79 (199)
T ss_pred CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHH-cCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHH
Confidence 48999999998764 235699999999999999 99999999999999999999999999998766644 9999999
Q ss_pred HHHHHHHhCCCCCCChHhHHHHHccCCC---ChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhh
Q psy12161 224 LLKTFLRELDEPLLTYDLYDEILLFPTL---NKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNL 300 (342)
Q Consensus 224 llK~fLr~Lp~pLi~~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nL 300 (342)
+||.|||+||+||+|.+.|+.++.+.+. +...+.. .++.++.+||+.|+.+|.+|+.||++|+++++.||||++||
T Consensus 80 lLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~-~l~~~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL 158 (199)
T cd04390 80 LLKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLG-ELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNL 158 (199)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHH
Confidence 9999999999999999999999886443 2233444 68889999999999999999999999999999999999999
Q ss_pred hHhhhcccCCCCCCCcc-chhhhchHHHHHHHHHhcccccc
Q psy12161 301 AVVFAPNLIWAPVNSQL-SLSAISPINSFVYFMFNNYHSIF 340 (342)
Q Consensus 301 a~vfgP~L~~~~~~~~~-~~~~~~~~~~~v~~lI~~~~~iF 340 (342)
|+||||+|+|+..+++. .+......+.++++||+|+++||
T Consensus 159 Aivf~P~llr~~~~~~~~~~~~~~~~~~~~~~lI~~~~~~F 199 (199)
T cd04390 159 ATVFGPNILRPKVEDPATIMEGTPQIQQLMTVMISKHEPLF 199 (199)
T ss_pred HHHhccccCCCCCCCHHHHHhccHHHHHHHHHHHHhhhhcC
Confidence 99999999999865553 34555677899999999999998
No 5
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1e-42 Score=304.79 Aligned_cols=187 Identities=33% Similarity=0.509 Sum_probs=171.2
Q ss_pred ccCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHHHHH
Q psy12161 150 QFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHN-DIHLAAVLLKTF 228 (342)
Q Consensus 150 ~FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~-d~~~va~llK~f 228 (342)
+||+||+.+++ +..||.++.+|++||++ +|+++|||||++|+...++++++.+|+|+.+++++ |+|++|+++|+|
T Consensus 1 ~FG~~L~~~~~---~~~vP~~i~~~i~~l~~-~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~va~~lK~f 76 (192)
T cd04402 1 LFGQPLSNICE---DDNLPKPILDMLSLLYQ-KGPSTEGIFRRSANAKACKELKEKLNSGVEVDLKAEPVLLLASVLKDF 76 (192)
T ss_pred CCCCcHHHHhC---CCCCCHHHHHHHHHHHH-hCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCCccCCHHHHHHHHHHH
Confidence 69999999987 46799999999999999 99999999999999999999999999999888877 999999999999
Q ss_pred HHhCCCCCCChHhHHHHHccCCCChh-HHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhcc
Q psy12161 229 LRELDEPLLTYDLYDEILLFPTLNKD-ERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPN 307 (342)
Q Consensus 229 Lr~Lp~pLi~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP~ 307 (342)
||+||+||+|.+.|+.++.+.+..++ +++. .++.++.+||+.|+.+|.+++.||++|+.+++.|+||++|||+||||+
T Consensus 77 lreLpepLi~~~~~~~~~~~~~~~~~~~~i~-~l~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~ 155 (192)
T cd04402 77 LRNIPGSLLSSDLYEEWMSALDQENEEEKIA-ELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPS 155 (192)
T ss_pred HHhCCCccCCHHHHHHHHHHHccCCHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhcccc
Confidence 99999999999999999986554444 4555 799999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccchhhhchHHHHHHHHHhccccccc
Q psy12161 308 LIWAPVNSQLSLSAISPINSFVYFMFNNYHSIFI 341 (342)
Q Consensus 308 L~~~~~~~~~~~~~~~~~~~~v~~lI~~~~~iF~ 341 (342)
|+|++.+......+...++.++++||+|+++||.
T Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~LI~~~~~IF~ 189 (192)
T cd04402 156 LLWPPASSELQNEDLKKVTSLVQFLIENCQEIFG 189 (192)
T ss_pred ccCCCCccHHHHHHHHhhhHHHHHHHHhHHHhCC
Confidence 9999954434556667889999999999999994
No 6
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.8e-42 Score=308.52 Aligned_cols=191 Identities=26% Similarity=0.385 Sum_probs=169.6
Q ss_pred ccCCChhHhhhhC----CCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCC---CCCCCC-CHHHH
Q psy12161 150 QFGASLQHIKDNN----GGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGE---PILFHN-DIHLA 221 (342)
Q Consensus 150 ~FG~~L~~l~~~~----~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~---~~~~~~-d~~~v 221 (342)
+||+||++++.++ ++..||.++.+|+++|++ +|+++|||||++|+..+++++++.++++. .+++++ |+|++
T Consensus 1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~-~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~v 79 (216)
T cd04391 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEE-RGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDA 79 (216)
T ss_pred CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHH-cCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHH
Confidence 6999999999874 457899999999999998 99999999999999999999999999863 455656 99999
Q ss_pred HHHHHHHHHhCCCCCCChHhHHHHHccCCCChhH-HHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhh
Q psy12161 222 AVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDE-RSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNL 300 (342)
Q Consensus 222 a~llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nL 300 (342)
|++||.|||+||+||+|.+.|+.+.++.+.++.+ ++. .++.++.+||+.|+.+|++|+.||++|+.+++.||||+.||
T Consensus 80 a~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~-~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL 158 (216)
T cd04391 80 ASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQ-ALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNV 158 (216)
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHH
Confidence 9999999999999999999999999987766654 455 79999999999999999999999999999999999999999
Q ss_pred hHhhhcccCCCCCCCc-------cchhhhchHHHHHHHHHhcccccccC
Q psy12161 301 AVVFAPNLIWAPVNSQ-------LSLSAISPINSFVYFMFNNYHSIFII 342 (342)
Q Consensus 301 a~vfgP~L~~~~~~~~-------~~~~~~~~~~~~v~~lI~~~~~iF~~ 342 (342)
|+||||+|+++....+ ..+......+.+++.||+|++.||.|
T Consensus 159 AivfaP~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~if~~ 207 (216)
T cd04391 159 AMIMAPNLFPPRGKHSKDNESLQEEVNMAAGCANIMRLLIRYQDLLWTV 207 (216)
T ss_pred HHHhccccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 9999999999874332 23344456789999999999999976
No 7
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.7e-42 Score=308.64 Aligned_cols=192 Identities=26% Similarity=0.423 Sum_probs=170.3
Q ss_pred CCccCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCC-CCCCCC-CHHHHHHHH
Q psy12161 148 TQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGE-PILFHN-DIHLAAVLL 225 (342)
Q Consensus 148 ~~~FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~-~~~~~~-d~~~va~ll 225 (342)
..+||+||+.++++ .+..||.++.+|++||+. +|+++|||||++|+...++.+++.++++. ..++++ ++|++|++|
T Consensus 2 ~~vFGvpL~~~~~r-~g~~IP~~i~~~i~~L~~-~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lL 79 (220)
T cd04375 2 KNVFGVPLLVNLQR-TGQPLPRSIQQAMRWLRN-NALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVADML 79 (220)
T ss_pred CCEecCcHHHHHhh-cCCCCChHHHHHHHHHHH-hCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHHHH
Confidence 46999999999988 677899999999999999 99999999999999999999999999864 556666 999999999
Q ss_pred HHHHHhCCCCCCChHhHHHHHccCC-CChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhh
Q psy12161 226 KTFLRELDEPLLTYDLYDEILLFPT-LNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVF 304 (342)
Q Consensus 226 K~fLr~Lp~pLi~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vf 304 (342)
|.|||+||+||+|.++|+.|+++.+ .++++++. .++.++..||++|+.+|++|+.||++|+.+++.||||++|||+||
T Consensus 80 K~flReLPePLlt~~l~~~fi~~~~~~~~~~~~~-~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 158 (220)
T cd04375 80 KQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLE-AVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCL 158 (220)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHH
Confidence 9999999999999999999998643 44555666 799999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCc--------------------cchhhhchHHHHHHHHHhcccccccC
Q psy12161 305 APNLIWAPVNSQ--------------------LSLSAISPINSFVYFMFNNYHSIFII 342 (342)
Q Consensus 305 gP~L~~~~~~~~--------------------~~~~~~~~~~~~v~~lI~~~~~iF~~ 342 (342)
||+||+...... ..+.+....+..+.+||+||++||.|
T Consensus 159 aP~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~v~~lI~~~~~lf~v 216 (220)
T cd04375 159 APSLFHLNTSRRENSSPARRMQRKKSLGKPDQKELSENKAAHQCLAYMIEECNTLFMV 216 (220)
T ss_pred hhhhcCCCCCCcccccchhhhccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999874321 12344456688899999999999986
No 8
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=2.9e-42 Score=299.31 Aligned_cols=175 Identities=26% Similarity=0.441 Sum_probs=162.6
Q ss_pred cCCChhHhhhhC---CCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHHH
Q psy12161 151 FGASLQHIKDNN---GGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHN-DIHLAAVLLK 226 (342)
Q Consensus 151 FG~~L~~l~~~~---~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~-d~~~va~llK 226 (342)
||+||++++++. ++..||.++.+|++||++ +|+++|||||++|+...++++++.+++|..+++++ |+|++|++||
T Consensus 1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~-~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~~~~d~h~va~lLK 79 (182)
T cd04381 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEK-HGMKCEGIYKVSGIKSKVDELKAAYNRRESPNLEEYEPPTVASLLK 79 (182)
T ss_pred CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHH-hCCCCCceeecCCcHHHHHHHHHHHcCCCCCCccccChHHHHHHHH
Confidence 899999999885 356799999999999999 99999999999999999999999999999888877 9999999999
Q ss_pred HHHHhCCCCCCChHhHHHHHccCCCChh-HHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhh
Q psy12161 227 TFLRELDEPLLTYDLYDEILLFPTLNKD-ERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFA 305 (342)
Q Consensus 227 ~fLr~Lp~pLi~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfg 305 (342)
.|||+||+||+|.++|+.+..+.+..++ +++. .++.++.+||+.|+.+|++++.||++|+++++.||||++|||+|||
T Consensus 80 ~fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~-~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfa 158 (182)
T cd04381 80 QYLRELPEPLLTKELMPRFEEACGRPTEAEREQ-ELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLS 158 (182)
T ss_pred HHHHhCCCccCCHHHHHHHHHHcCCCCHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhC
Confidence 9999999999999999999987665554 4555 8999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCccchhhhchHHHHHHHHHhccccccc
Q psy12161 306 PNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIFI 341 (342)
Q Consensus 306 P~L~~~~~~~~~~~~~~~~~~~~v~~lI~~~~~iF~ 341 (342)
|+|+++. .+++.||+||+.||.
T Consensus 159 P~l~~~~--------------~~~~~li~~~~~if~ 180 (182)
T cd04381 159 PTVQISN--------------RLLYALLTHCQELFG 180 (182)
T ss_pred ccccCcH--------------HHHHHHHHHHHHHcC
Confidence 9998665 789999999999995
No 9
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3e-42 Score=306.34 Aligned_cols=191 Identities=23% Similarity=0.369 Sum_probs=169.0
Q ss_pred cCCChhHhhhhCCC----------CCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCC--CCCCC-C
Q psy12161 151 FGASLQHIKDNNGG----------DVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEP--ILFHN-D 217 (342)
Q Consensus 151 FG~~L~~l~~~~~~----------~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~--~~~~~-d 217 (342)
||+||+.++++.+. ..||.++.+|+++|++ +|+++|||||++|+..+++++++.+|+|.. +++.. |
T Consensus 1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~-~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~ 79 (213)
T cd04397 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQ-MDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKEN 79 (213)
T ss_pred CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHH-cCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCc
Confidence 89999999999522 2599999999999999 999999999999999999999999999753 35655 9
Q ss_pred HHHHHHHHHHHHHhCCCCCCChHhHHHHHccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCC-----C
Q psy12161 218 IHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSD-----L 292 (342)
Q Consensus 218 ~~~va~llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~-----~ 292 (342)
+|++|++||.|||+||+||+|.++|+.++++.+.++.+...+.++.++.+||+.|+.+|++|+.||++|+.+++ .
T Consensus 80 ~~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~ 159 (213)
T cd04397 80 PVQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETG 159 (213)
T ss_pred HHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 99999999999999999999999999999987777665554478999999999999999999999999987664 5
Q ss_pred CCCChhhhhHhhhcccCCCCCCCccchhhhchHHHHHHHHHhcccccccC
Q psy12161 293 NKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIFII 342 (342)
Q Consensus 293 NkMt~~nLa~vfgP~L~~~~~~~~~~~~~~~~~~~~v~~lI~~~~~iF~~ 342 (342)
||||++|||+||||||+|++.+......+....+.++++||+||+.||.|
T Consensus 160 NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~vv~~LI~n~~~if~v 209 (213)
T cd04397 160 SKMDIHNLATVITPNILYSKTDNPNTGDEYFLAIEAVNYLIENNEEFCEV 209 (213)
T ss_pred CcCChHHhHHhhcccccCCCCCCcchHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 99999999999999999999655444455556789999999999999986
No 10
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.7e-42 Score=300.01 Aligned_cols=182 Identities=25% Similarity=0.481 Sum_probs=165.0
Q ss_pred cCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCC----CHHHHHHHHH
Q psy12161 151 FGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHN----DIHLAAVLLK 226 (342)
Q Consensus 151 FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~----d~~~va~llK 226 (342)
||+||++++++ .+..+|.++.+|+++|++ +|+++|||||++|+...+++++..+|.|..+++.. |+|++|++||
T Consensus 1 FGv~L~~~~~~-~~~~iP~~l~~~i~~l~~-~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK 78 (187)
T cd04403 1 FGCHLEALCQR-ENSTVPKFVRLCIEAVEK-RGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALK 78 (187)
T ss_pred CCCChHHHHHH-cCCCCChHHHHHHHHHHH-hCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHH
Confidence 99999999998 577899999999999999 99999999999999999999999999988766532 9999999999
Q ss_pred HHHHhCCCCCCChHhHHHHHccCCCChh-HHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhh
Q psy12161 227 TFLRELDEPLLTYDLYDEILLFPTLNKD-ERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFA 305 (342)
Q Consensus 227 ~fLr~Lp~pLi~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfg 305 (342)
.|||+||+||+|.+.|+.++++.+.++. +++. .++.++.+||+.|+.+|++++.||++|+++++.||||++|||+|||
T Consensus 79 ~fLReLPepLi~~~~~~~~~~~~~~~~~~~~i~-~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~ 157 (187)
T cd04403 79 LFFRELPEPLFPYSLFNDFVAAIKLSDYEQRVS-AVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFG 157 (187)
T ss_pred HHHhcCCCCcCCHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhcc
Confidence 9999999999999999999987665544 4555 7999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCccchhhhchHHHHHHHHHhc
Q psy12161 306 PNLIWAPVNSQLSLSAISPINSFVYFMFNN 335 (342)
Q Consensus 306 P~L~~~~~~~~~~~~~~~~~~~~v~~lI~~ 335 (342)
|+|+|++.++.....++..++.+++.||+|
T Consensus 158 P~ll~~~~~~~~~~~~~~~~~~~ve~l~~~ 187 (187)
T cd04403 158 PTLLRPEQETGNIAVHMVYQNQIVELILLE 187 (187)
T ss_pred ccccCCCCcchHHHHHhHHHHHHHHHHhhC
Confidence 999999955544444677889999999986
No 11
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.2e-42 Score=302.49 Aligned_cols=191 Identities=34% Similarity=0.547 Sum_probs=169.6
Q ss_pred CCccCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCC-C--CC-CHHHHHH
Q psy12161 148 TQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPIL-F--HN-DIHLAAV 223 (342)
Q Consensus 148 ~~~FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~-~--~~-d~~~va~ 223 (342)
.++||+||++++.+ .++.||.++.+|+.+|++ +|+.+|||||++|+...++.+++.+|.|.... . .. |+|++|+
T Consensus 2 ~~~FG~~L~~~~~~-~~~~iP~~v~~~i~~L~~-~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~ 79 (203)
T cd04386 2 KPVFGTPLEEHLKR-TGREIALPIEACVMCLLE-TGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVAS 79 (203)
T ss_pred CCcCCCCHHHHHHH-cCCCCCHHHHHHHHHHHH-cCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHH
Confidence 46999999999988 567899999999999999 99999999999999999999999999997432 1 22 9999999
Q ss_pred HHHHHHHhCCCCCCChHhHHHHHccCCCChh-HHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhH
Q psy12161 224 LLKTFLRELDEPLLTYDLYDEILLFPTLNKD-ERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAV 302 (342)
Q Consensus 224 llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~ 302 (342)
+||.|||+||+||+|.+.|+.++...+..+. ++.. .++.++.+||+.|+.+|++++.||++|+++++.|+||++|||+
T Consensus 80 ~lK~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~-~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai 158 (203)
T cd04386 80 ALKSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQ-AIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAI 158 (203)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHH
Confidence 9999999999999999999999997666554 4455 7999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCCCcc---chhhhchHHHHHHHHHhccccccc
Q psy12161 303 VFAPNLIWAPVNSQL---SLSAISPINSFVYFMFNNYHSIFI 341 (342)
Q Consensus 303 vfgP~L~~~~~~~~~---~~~~~~~~~~~v~~lI~~~~~iF~ 341 (342)
||||+|+|++.++.. ........+.++++||+||+.||.
T Consensus 159 ~faP~ll~~~~~~~~~~~~~~~~~~~~~iv~~LI~~~~~iF~ 200 (203)
T cd04386 159 VLAPNLLWAKNEGSLAEMAAGTSVHVVAIVELIISHADWFFP 200 (203)
T ss_pred HhccccCCCCCCChhhhhhhhhhHHHHHHHHHHHHhHHHhCC
Confidence 999999999854422 223345679999999999999995
No 12
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=3.2e-42 Score=300.29 Aligned_cols=183 Identities=27% Similarity=0.476 Sum_probs=165.4
Q ss_pred CccCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCC---CC-CHHHHHHH
Q psy12161 149 QQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILF---HN-DIHLAAVL 224 (342)
Q Consensus 149 ~~FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~---~~-d~~~va~l 224 (342)
.+||++|++++.+ .+..||.++.+|++||++ +|+++|||||++|+..+++.+++.+|+|..... +. |+|++|++
T Consensus 1 k~FG~~L~~~~~~-~~~~IP~~v~~~i~~l~~-~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~l 78 (188)
T cd04383 1 KLFNGSLEEYIQD-SGQAIPLVVESCIRFINL-YGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGV 78 (188)
T ss_pred CcCCccHHHHHHH-CCCCCChHHHHHHHHHHH-cCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHH
Confidence 4799999999987 678899999999999999 999999999999999999999999999885422 23 99999999
Q ss_pred HHHHHHhCCCCCCChHhHHHHHccCCCChhH-HHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHh
Q psy12161 225 LKTFLRELDEPLLTYDLYDEILLFPTLNKDE-RSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVV 303 (342)
Q Consensus 225 lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~v 303 (342)
||.|||+||+||+|.+.|+.++++.+.++.+ ++. .++.++.+||+.|+.+|++|+.||++|+++++.||||++|||+|
T Consensus 79 LK~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~-~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAiv 157 (188)
T cd04383 79 LKLYFRGLENPLFPKERFEDLMSCVKLENPTERVH-QIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAIC 157 (188)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceee
Confidence 9999999999999999999999976665544 445 79999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCCCccchhhhchHHHHHHHHHhc
Q psy12161 304 FAPNLIWAPVNSQLSLSAISPINSFVYFMFNN 335 (342)
Q Consensus 304 fgP~L~~~~~~~~~~~~~~~~~~~~v~~lI~~ 335 (342)
|||+|+|.+ +....+......+++++.+|.|
T Consensus 158 f~P~L~~~p-~~~~~~~~~~~~~~~~~~li~~ 188 (188)
T cd04383 158 FGPTLMPVP-EGQDQVSCQAHVNELIKTIIIH 188 (188)
T ss_pred eeccccCCC-CCccHHHHHHHHHHHHHHHhcC
Confidence 999999988 5555677677889999999875
No 13
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.5e-42 Score=301.60 Aligned_cols=190 Identities=33% Similarity=0.479 Sum_probs=166.6
Q ss_pred ccCCChhHhhhhC--CCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHH
Q psy12161 150 QFGASLQHIKDNN--GGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHNDIHLAAVLLKT 227 (342)
Q Consensus 150 ~FG~~L~~l~~~~--~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~d~~~va~llK~ 227 (342)
+||+||+.++.+. ++..||.++.+|++||++ |+++|||||++|+..+++++++.+|+|.......++|++|++||.
T Consensus 1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~--~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~vaslLK~ 78 (202)
T cd04394 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD--HLSTEGLFRKSGSVVRQKELKAKLEGGEACLSSALPCDVAGLLKQ 78 (202)
T ss_pred CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH--CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCccccCHHHHHHHHHH
Confidence 6999999998653 467899999999999987 699999999999999999999999999865433389999999999
Q ss_pred HHHhCCCCCCChHhHHHHHccCCCChhH-HHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhc
Q psy12161 228 FLRELDEPLLTYDLYDEILLFPTLNKDE-RSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAP 306 (342)
Q Consensus 228 fLr~Lp~pLi~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP 306 (342)
|||+||+||+|.+.|+.++.+.+.++++ +.. .++.++.+||+.|+.+|++|+.||++|+++++.||||++|||+||||
T Consensus 79 flReLPePLi~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP 157 (202)
T cd04394 79 FFRELPEPLLPYDLHEALLKAQELPTDEERKS-ATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAP 157 (202)
T ss_pred HHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcc
Confidence 9999999999999999999976666444 444 78889999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCc-c---chhhhchHHHHHHHHHhcccccccC
Q psy12161 307 NLIWAPVNSQ-L---SLSAISPINSFVYFMFNNYHSIFII 342 (342)
Q Consensus 307 ~L~~~~~~~~-~---~~~~~~~~~~~v~~lI~~~~~iF~~ 342 (342)
+|+|+..+.. + ...++..++.++++||+|+++||.|
T Consensus 158 ~L~~~~~~~~~~s~~~~~~~~~~~~vv~~lI~~~~~i~~v 197 (202)
T cd04394 158 NLFQSEEGGEKMSSSTEKRLRLQAAVVQTLIDNASNIGIV 197 (202)
T ss_pred eeecCCCcccccchhHHHhHHHHHHHHHHHHHHHHHHccC
Confidence 9999984322 1 1234566789999999999999976
No 14
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-41 Score=298.40 Aligned_cols=183 Identities=25% Similarity=0.474 Sum_probs=163.0
Q ss_pred CccCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCC----C-CHHHHHH
Q psy12161 149 QQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFH----N-DIHLAAV 223 (342)
Q Consensus 149 ~~FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~----~-d~~~va~ 223 (342)
++||++|++++.+ .+..||.++.+|++||++ +|+ +|||||++|+..+++++++.+|+|...++. . |+|++|+
T Consensus 1 ~vFG~~L~~~~~~-~g~~iP~il~~~i~~l~~-~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~ 77 (195)
T cd04384 1 RVFGCDLTEHLLN-SGQDVPQVLKSCTEFIEK-HGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSS 77 (195)
T ss_pred CcCCccHHHHHHH-cCCCCChHHHHHHHHHHH-cCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHH
Confidence 4899999999988 578899999999999999 998 699999999999999999999999866553 2 9999999
Q ss_pred HHHHHHHhCCCCCCChHhHHHHHccCCCCh-hHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhH
Q psy12161 224 LLKTFLRELDEPLLTYDLYDEILLFPTLNK-DERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAV 302 (342)
Q Consensus 224 llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~ 302 (342)
+||.|||+||+||+|.++|+.++++.+.++ ++++. .++.++.+||+.|+.+|++|+.||++|+++++.||||++|||+
T Consensus 78 lLK~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~-~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 156 (195)
T cd04384 78 LCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLE-KIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAI 156 (195)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhH
Confidence 999999999999999999999998655544 44555 7999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCCCcc------chhhhchHHHHHHHHHhc
Q psy12161 303 VFAPNLIWAPVNSQL------SLSAISPINSFVYFMFNN 335 (342)
Q Consensus 303 vfgP~L~~~~~~~~~------~~~~~~~~~~~v~~lI~~ 335 (342)
||||+|+|++..... ...+.+.++.++++||+|
T Consensus 157 vf~P~L~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~~ 195 (195)
T cd04384 157 VWAPNLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNH 195 (195)
T ss_pred hhhhhcCCCCccccccchHHHHHHHHhhhhhheehhhcC
Confidence 999999999843322 356677788999999987
No 15
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.7e-41 Score=296.79 Aligned_cols=189 Identities=27% Similarity=0.476 Sum_probs=168.6
Q ss_pred ccCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCC-CCCCC----CHHHHHHH
Q psy12161 150 QFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEP-ILFHN----DIHLAAVL 224 (342)
Q Consensus 150 ~FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~-~~~~~----d~~~va~l 224 (342)
.||+||++.....++..||.++.+|++++++ +|+++|||||++|+..+++++++.+|+|.. ++..+ |+|++|++
T Consensus 1 ~FGvpl~~~~~~~~~~~vP~iv~~~~~~l~~-~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~l 79 (196)
T cd04395 1 TFGVPLDDCPPSSENPYVPLIVEVCCNIVEA-RGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSL 79 (196)
T ss_pred CCCccHHHHhcccCCCCCChHHHHHHHHHHH-cCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHH
Confidence 4999999988765568899999999999999 999999999999999999999999999873 33322 89999999
Q ss_pred HHHHHHhCCCCCCChHhHHHHHccCCCCh-hHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHh
Q psy12161 225 LKTFLRELDEPLLTYDLYDEILLFPTLNK-DERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVV 303 (342)
Q Consensus 225 lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~v 303 (342)
||.|||+||+||+|.+.|++++.+.+.++ ++++. .++.++.+||+.|+.+|.+++.||++|+.+++.|+||++|||+|
T Consensus 80 lK~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~-~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~ 158 (196)
T cd04395 80 LKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLK-ELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIV 158 (196)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHh
Confidence 99999999999999999999998766655 44555 79999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCCCcc-chhhhchHHHHHHHHHhcccccc
Q psy12161 304 FAPNLIWAPVNSQL-SLSAISPINSFVYFMFNNYHSIF 340 (342)
Q Consensus 304 fgP~L~~~~~~~~~-~~~~~~~~~~~v~~lI~~~~~iF 340 (342)
|||+|+|++.++.. ...++...+.+++.||+|||.+|
T Consensus 159 faP~l~r~~~~~~~~~~~~~~~~~~ii~~LI~~~d~~f 196 (196)
T cd04395 159 FGPTLVRTSDDNMETMVTHMPDQCKIVETLIQHYDWFF 196 (196)
T ss_pred hccccCCCCCCCHHHHHHhHHHHHHHHHHHHHhCcccC
Confidence 99999999844443 33566778999999999999998
No 16
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.1e-41 Score=303.02 Aligned_cols=187 Identities=27% Similarity=0.419 Sum_probs=164.0
Q ss_pred ccCCChhHhhhhCC--------------CCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcC----CC
Q psy12161 150 QFGASLQHIKDNNG--------------GDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNG----EP 211 (342)
Q Consensus 150 ~FG~~L~~l~~~~~--------------~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g----~~ 211 (342)
+||++|++.+.... ...||.++.+|++||++ +|+++|||||++|+...++++++.+|+| ..
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~-~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~ 79 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKE-NATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKS 79 (225)
T ss_pred CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHH-CCCCCCCceeCCCCHHHHHHHHHHHccCcccCCc
Confidence 69999999887652 14699999999999999 9999999999999999999999999985 34
Q ss_pred CCCCC-CHHHHHHHHHHHHHhCCCCCCChHhHHHHHccCC------------------CChhHHHHHHHHHHHhhCCccH
Q psy12161 212 ILFHN-DIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPT------------------LNKDERSRYVKILILEKLPTDN 272 (342)
Q Consensus 212 ~~~~~-d~~~va~llK~fLr~Lp~pLi~~~~~~~~~~~~~------------------~~~~~~~~~~~~~ll~~Lp~~n 272 (342)
+++++ |+|++|++||+|||+||+||+|.++|+.+..+.. .+.++++. .++.++.+||+.|
T Consensus 80 ~~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~-~l~~li~~LP~~n 158 (225)
T cd04396 80 FDWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIK-EYRDLITRLPNLN 158 (225)
T ss_pred CCccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHH-HHHHHHHHCCHHH
Confidence 66655 9999999999999999999999999999976321 12234555 7899999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhcccCCCCCCCccchhhhchHHHHHHHHHhccccc
Q psy12161 273 YTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSI 339 (342)
Q Consensus 273 ~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP~L~~~~~~~~~~~~~~~~~~~~v~~lI~~~~~i 339 (342)
+.+|.+|+.||++|+++++.||||++|||+||||+|++++ +..+...+....+.++++||+|++++
T Consensus 159 ~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~-~~~~~~~~~~~~~~~ve~lI~~~~~~ 224 (225)
T cd04396 159 RQLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHP-DHEMDPKEYKLSRLVVEFLIEHQDKF 224 (225)
T ss_pred HHHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCC-ccccCHHHHHHHHHHHHHHHHhHHhh
Confidence 9999999999999999999999999999999999999988 55555556667789999999999986
No 17
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.5e-41 Score=296.52 Aligned_cols=182 Identities=28% Similarity=0.483 Sum_probs=162.7
Q ss_pred cCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCC-CCCCC-CHHHHHHHHHHH
Q psy12161 151 FGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEP-ILFHN-DIHLAAVLLKTF 228 (342)
Q Consensus 151 FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~-~~~~~-d~~~va~llK~f 228 (342)
||+||+.+.++ .++.||.++.+|+++|++ +|+++|||||++|+...++++++.+++|.. +++.+ |+|++|++||.|
T Consensus 1 FGv~l~~l~~~-~~~~vP~iv~~ci~~i~~-~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~f 78 (200)
T cd04408 1 FGVDFSQLPRD-FPEEVPFVVVRCTAEIEN-RALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKHF 78 (200)
T ss_pred CCCCHHHHHHh-CCCCCChHHHHHHHHHHH-cCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHHHH
Confidence 99999999998 678899999999999999 999999999999999999999999999874 56666 999999999999
Q ss_pred HHhCCCCCCChHhHHHHHccCCC----C---------hhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCC
Q psy12161 229 LRELDEPLLTYDLYDEILLFPTL----N---------KDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKM 295 (342)
Q Consensus 229 Lr~Lp~pLi~~~~~~~~~~~~~~----~---------~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkM 295 (342)
||+||+||+|.++|+.++.+.+. . ..+++. .++.++.+||+.|+.+|.+|+.||++|+.+++.|+|
T Consensus 79 LReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~lk~li~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM 157 (200)
T cd04408 79 LKELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIR-SLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNKM 157 (200)
T ss_pred HHhCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 99999999999999999875321 1 123455 799999999999999999999999999999999999
Q ss_pred ChhhhhHhhhcccCCCCCCCc---cchhhhchHHHHHHHHHhc
Q psy12161 296 TWNNLAVVFAPNLIWAPVNSQ---LSLSAISPINSFVYFMFNN 335 (342)
Q Consensus 296 t~~nLa~vfgP~L~~~~~~~~---~~~~~~~~~~~~v~~lI~~ 335 (342)
|+.|||+||||+|+|++.+.. ..+.+++.++.+|++||+|
T Consensus 158 ~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~q~~~ve~li~~ 200 (200)
T cd04408 158 SPNNLGIVFGPTLLRPLVGGDVSMICLLDTGYQAQLVEFLISN 200 (200)
T ss_pred CHhHhhhhhccccCCCCCCCchHHHHHhccchHHHHHHHHhhC
Confidence 999999999999999995433 2346778889999999986
No 18
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=5.8e-41 Score=291.68 Aligned_cols=180 Identities=28% Similarity=0.476 Sum_probs=161.8
Q ss_pred cCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCC-CCCCCC-CHHHHHHHHHHH
Q psy12161 151 FGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGE-PILFHN-DIHLAAVLLKTF 228 (342)
Q Consensus 151 FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~-~~~~~~-d~~~va~llK~f 228 (342)
||+||+.++. ++..||.++.+|++||++ +|+++|||||++|+...++++++.++.|. .+++.+ |+|++|++||.|
T Consensus 1 FGv~L~~~~~--~~~~vP~il~~~i~~l~~-~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK~f 77 (186)
T cd04407 1 FGVRVGSLTS--NKTSVPIVLEKLLEHVEM-HGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQW 77 (186)
T ss_pred CCCcHHHHHh--CCCCCCcHHHHHHHHHHH-cCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHHHH
Confidence 9999999976 467899999999999999 99999999999999999999999999875 466666 999999999999
Q ss_pred HHhCCCCCCChHhHHHHHccCCCChh-HHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhcc
Q psy12161 229 LRELDEPLLTYDLYDEILLFPTLNKD-ERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPN 307 (342)
Q Consensus 229 Lr~Lp~pLi~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP~ 307 (342)
||+||+||+|.+.|+.++.+.+.++. +++. .++.++.+||+.|+.+|.+++.||++|+++++.||||++|||+|||||
T Consensus 78 lReLPepLi~~~~~~~~~~~~~~~~~~~~~~-~l~~ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~ 156 (186)
T cd04407 78 LRELPEPLMTFAQYNDFLRAVELPEKQEQLQ-AIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPC 156 (186)
T ss_pred HHhCCCccCCHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhcc
Confidence 99999999999999999987665544 4555 799999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC-Cc-cchhhhchHHHHHHHHHh
Q psy12161 308 LIWAPVN-SQ-LSLSAISPINSFVYFMFN 334 (342)
Q Consensus 308 L~~~~~~-~~-~~~~~~~~~~~~v~~lI~ 334 (342)
|+|++.. ++ ..+.+...+..++++||+
T Consensus 157 Ll~~~~~~d~~~~~~~~~~~~~~v~~li~ 185 (186)
T cd04407 157 LLRCPDSSDPLTSMKDVAKTTTCVEMLIK 185 (186)
T ss_pred ccCCCCCCCHHHHHHhhhhhHHHHHHHhh
Confidence 9997632 22 456788888999999997
No 19
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.9e-41 Score=294.59 Aligned_cols=185 Identities=30% Similarity=0.510 Sum_probs=166.8
Q ss_pred cCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCC-CCC-----CC-CHHHHHH
Q psy12161 151 FGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEP-ILF-----HN-DIHLAAV 223 (342)
Q Consensus 151 FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~-~~~-----~~-d~~~va~ 223 (342)
||+||++++.+ .+..||.++.+|+++|++ +|+++|||||++|+..+++++++.+|+|.. .+. .. |+|++|+
T Consensus 1 FG~~L~~~~~~-~~~~iP~~v~~~i~~l~~-~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~ 78 (192)
T cd04398 1 FGVPLEDLILR-EGDNVPNIVYQCIQAIEN-FGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVAS 78 (192)
T ss_pred CCCChHHHHHH-cCCCCCHHHHHHHHHHHH-hCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHH
Confidence 89999999998 568899999999999999 999999999999999999999999999762 222 12 9999999
Q ss_pred HHHHHHHhCCCCCCChHhHHHHHccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHh
Q psy12161 224 LLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVV 303 (342)
Q Consensus 224 llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~v 303 (342)
+||.|||+||+||+|.+.|+.++++.+.++.......++.++.+||+.|+.+|.+++.||++|+.+++.|+||++|||+|
T Consensus 79 ~LK~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaiv 158 (192)
T cd04398 79 LLKLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAII 158 (192)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHH
Confidence 99999999999999999999999976666554443479999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCCCccchhhhchHHHHHHHHHhcccccc
Q psy12161 304 FAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIF 340 (342)
Q Consensus 304 fgP~L~~~~~~~~~~~~~~~~~~~~v~~lI~~~~~iF 340 (342)
|||+|+|++.+ +..+++.++.+++.||+||++||
T Consensus 159 f~P~l~~~~~~---~~~~~~~~~~~~~~LI~~~~~iF 192 (192)
T cd04398 159 WGPTLMNAAPD---NAADMSFQSRVIETLLDNAYQIF 192 (192)
T ss_pred HhhhhCCCCcc---chhhHHHHHHHHHHHHHHHHHhC
Confidence 99999999933 45667778899999999999998
No 20
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.5e-40 Score=293.23 Aligned_cols=177 Identities=29% Similarity=0.515 Sum_probs=160.9
Q ss_pred CCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHHHHHhCCCCCCChHh
Q psy12161 164 GDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHN--DIHLAAVLLKTFLRELDEPLLTYDL 241 (342)
Q Consensus 164 ~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~--d~~~va~llK~fLr~Lp~pLi~~~~ 241 (342)
++.||.++.+|++||++ +|+++|||||++|+...++.+++.+|+|..+++.+ |+|++|++||.|||+||+||+|.++
T Consensus 6 ~~~iP~iv~~ci~~l~~-~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~~ 84 (206)
T cd04376 6 ARQVPRLVESCCQHLEK-HGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPREL 84 (206)
T ss_pred CCCCCHHHHHHHHHHHH-cCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHH
Confidence 46899999999999999 99999999999999999999999999998777654 9999999999999999999999999
Q ss_pred HHHHHccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCC-----------CCCCChhhhhHhhhcccCC
Q psy12161 242 YDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSD-----------LNKMTWNNLAVVFAPNLIW 310 (342)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~-----------~NkMt~~nLa~vfgP~L~~ 310 (342)
|+.++...+.+.++++. .++.++.+||+.|+.+|.+|+.||++|+.+++ .||||++|||+||||+|+|
T Consensus 85 y~~~i~~~~~~~~~~~~-~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~ 163 (206)
T cd04376 85 YTAFIGTALLEPDEQLE-ALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLH 163 (206)
T ss_pred HHHHHHHHcCCHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccC
Confidence 99999987777666776 79999999999999999999999999999986 7999999999999999999
Q ss_pred CCCCCc-------cchhhhchHHHHHHHHHhcccccccC
Q psy12161 311 APVNSQ-------LSLSAISPINSFVYFMFNNYHSIFII 342 (342)
Q Consensus 311 ~~~~~~-------~~~~~~~~~~~~v~~lI~~~~~iF~~ 342 (342)
++.+.. ..+.+...++.++++||+||+.||.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~ 202 (206)
T cd04376 164 KQKSGEREFVQASLRIEESTAIINVVQTMIDNYEELFMV 202 (206)
T ss_pred CCCCcccccchhhhhHHHHHHHHHHHHHHHHhHHHHcCC
Confidence 985432 24455667789999999999999975
No 21
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=1.9e-40 Score=288.41 Aligned_cols=179 Identities=26% Similarity=0.507 Sum_probs=160.0
Q ss_pred cCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCC-CCCCCC-CHHHHHHHHHHH
Q psy12161 151 FGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGE-PILFHN-DIHLAAVLLKTF 228 (342)
Q Consensus 151 FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~-~~~~~~-d~~~va~llK~f 228 (342)
||++|+.++.. ++.||.++.+|++||++ +|+.+|||||++|+..+++++++.+|.|. .+++++ |+|++|++||.|
T Consensus 1 FGv~L~~l~~~--~~~iP~ii~~~i~~l~~-~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~f 77 (186)
T cd04406 1 FGVELSRLTSE--DRSVPLVVEKLINYIEM-HGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQW 77 (186)
T ss_pred CCCchHHHHHC--CCCCCcHHHHHHHHHHH-hCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHHH
Confidence 99999999864 46899999999999999 99999999999999999999999999875 466666 999999999999
Q ss_pred HHhCCCCCCChHhHHHHHccCCCChh-HHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhcc
Q psy12161 229 LRELDEPLLTYDLYDEILLFPTLNKD-ERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPN 307 (342)
Q Consensus 229 Lr~Lp~pLi~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP~ 307 (342)
||+||+||+|.++|+.++++.+.++. +++. .++.++.+||+.|+.+|++++.||++|+.+++.|+||++|||+||||+
T Consensus 78 LReLPePLi~~~~y~~~~~~~~~~~~~~~i~-~~~~li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~ 156 (186)
T cd04406 78 LRDLPNPLMTFELYEEFLRAMGLQERRETVR-GVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPC 156 (186)
T ss_pred HHhCCCccCCHHHHHHHHHHHhcccHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhccc
Confidence 99999999999999999987666554 4444 789999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC-Cc-cchhhhchHHHHHHHHH
Q psy12161 308 LIWAPVN-SQ-LSLSAISPINSFVYFMF 333 (342)
Q Consensus 308 L~~~~~~-~~-~~~~~~~~~~~~v~~lI 333 (342)
|+|.+.. ++ .++.++..++.++++||
T Consensus 157 ll~~p~~~d~~~~~~~~~~~~~~~~~~~ 184 (186)
T cd04406 157 ILRCPDTTDPLQSVQDISKTTTCVELIV 184 (186)
T ss_pred ccCCCCCCCHHHHHHHHhhccchhhhhc
Confidence 9998732 22 45778888888888876
No 22
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=2e-40 Score=292.66 Aligned_cols=182 Identities=29% Similarity=0.484 Sum_probs=161.7
Q ss_pred cCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCC-CCCCC-CHHHHHHHHHHH
Q psy12161 151 FGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEP-ILFHN-DIHLAAVLLKTF 228 (342)
Q Consensus 151 FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~-~~~~~-d~~~va~llK~f 228 (342)
||+||..++.+ .++.||.++.+|+++|++ +|+++|||||++|+...++++++.+++|.. +++.+ |+|++|++||+|
T Consensus 1 FG~~L~~~~~~-~~~~vP~iv~~ci~~i~~-~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK~f 78 (203)
T cd04378 1 FGVDFSQVPRD-FPDEVPFIIKKCTSEIEN-RALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLKLF 78 (203)
T ss_pred CCCChHHHHHH-CCCCCChHHHHHHHHHHh-cCCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 99999999998 567899999999999999 999999999999999999999999999874 55656 999999999999
Q ss_pred HHhCCCCCCChHhHHHHHccCCC----C----------h-hHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCC
Q psy12161 229 LRELDEPLLTYDLYDEILLFPTL----N----------K-DERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLN 293 (342)
Q Consensus 229 Lr~Lp~pLi~~~~~~~~~~~~~~----~----------~-~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~N 293 (342)
||+||+||+|.+.|+.++.+.+. + + .+++. .++.++.+||+.|+.+|.+|+.||++|+++++.|
T Consensus 79 LReLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~-~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~N 157 (203)
T cd04378 79 LRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIR-KLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEEN 157 (203)
T ss_pred HHhCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999875321 1 1 22344 7899999999999999999999999999999999
Q ss_pred CCChhhhhHhhhcccCCCCCCCc----cchhhhchHHHHHHHHHhc
Q psy12161 294 KMTWNNLAVVFAPNLIWAPVNSQ----LSLSAISPINSFVYFMFNN 335 (342)
Q Consensus 294 kMt~~nLa~vfgP~L~~~~~~~~----~~~~~~~~~~~~v~~lI~~ 335 (342)
|||++|||+||||+|+|++.++. .++.+...++.++++||+|
T Consensus 158 kM~~~NLaivf~P~Ll~~~~~~~~~~~~~l~~~~~q~~~ve~li~~ 203 (203)
T cd04378 158 KMSPNNLGIVFGPTLIRPRPGDADVSLSSLVDYGYQARLVEFLITN 203 (203)
T ss_pred CCCHHHhhhhhccccCCCCCCCcchhHHHHHhhhhhHHHHHHHhhC
Confidence 99999999999999999995432 2355778899999999986
No 23
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=4e-40 Score=287.77 Aligned_cols=184 Identities=29% Similarity=0.471 Sum_probs=166.3
Q ss_pred CccCCChhHhhhhC-CCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHH
Q psy12161 149 QQFGASLQHIKDNN-GGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHN--DIHLAAVLL 225 (342)
Q Consensus 149 ~~FG~~L~~l~~~~-~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~--d~~~va~ll 225 (342)
++||+||++++.+. .+..||.++.+|++||++ +|+++|||||++|+...++++++.+++|+.+++.+ |+|++|++|
T Consensus 1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~-~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~l 79 (189)
T cd04393 1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQ-HGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASLL 79 (189)
T ss_pred CcccccHHHHHhccCCCCCCChHHHHHHHHHHH-cCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHHH
Confidence 48999999998863 356899999999999999 99999999999999999999999999999887765 999999999
Q ss_pred HHHHHhCCCCCCChHhHHHHHccCC-C-ChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHh
Q psy12161 226 KTFLRELDEPLLTYDLYDEILLFPT-L-NKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVV 303 (342)
Q Consensus 226 K~fLr~Lp~pLi~~~~~~~~~~~~~-~-~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~v 303 (342)
|+|||+||+||+|.+.|+.++.+.+ . .+++... .++.++.+||+.|+.+|.+++.||++|+.+++.|+||+.|||+|
T Consensus 80 K~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~-~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~v 158 (189)
T cd04393 80 RLFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGR-KLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAV 158 (189)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHHHccChHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhh
Confidence 9999999999999999999988533 2 2334555 68999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCCCccchhhhchHHHHHHHHHhc
Q psy12161 304 FAPNLIWAPVNSQLSLSAISPINSFVYFMFNN 335 (342)
Q Consensus 304 fgP~L~~~~~~~~~~~~~~~~~~~~v~~lI~~ 335 (342)
|||+|+|.+ .+...+.+....+.+++.||||
T Consensus 159 f~P~l~~~~-~~~~~~~~~~~~~~~~~~li~~ 189 (189)
T cd04393 159 FGPDVFHVY-TDVEDMKEQEICSRIMAKLLEN 189 (189)
T ss_pred ccCceeCCC-CCcccHHHHHHHHHHHHHHhcC
Confidence 999999999 5566777778889999999997
No 24
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5e-40 Score=285.90 Aligned_cols=177 Identities=28% Similarity=0.496 Sum_probs=156.2
Q ss_pred cCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCC---CHHHHHHHHHH
Q psy12161 151 FGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHN---DIHLAAVLLKT 227 (342)
Q Consensus 151 FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~---d~~~va~llK~ 227 (342)
||+||++++.. +..||.++.+|++||++ +|+.+|||||++|+..+++++++.+++|...++.. |+|++|+++|+
T Consensus 1 FG~pL~~~~~~--~~~IP~~l~~~i~~l~~-~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~ 77 (185)
T cd04373 1 FGVPLANVVTS--EKPIPIFLEKCVEFIEA-TGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKS 77 (185)
T ss_pred CCCchHHHHhC--CCCCCcHHHHHHHHHHH-cCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHH
Confidence 89999999884 67899999999999999 99999999999999999999999999988777643 89999999999
Q ss_pred HHHhCCCCCCChHhHHHHHccCCCChh-HHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhc
Q psy12161 228 FLRELDEPLLTYDLYDEILLFPTLNKD-ERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAP 306 (342)
Q Consensus 228 fLr~Lp~pLi~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP 306 (342)
|||+||+||+|.++|+.+.++.+.+++ +++. .++.++++||+.|+.+|.+++.||++|+++++.|+||++|||+||||
T Consensus 78 fLreLPePlip~~~~~~~~~~~~~~~~~~~i~-~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P 156 (185)
T cd04373 78 FFSELPDPLIPYSMHLELVEAAKINDREQRLH-ALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWP 156 (185)
T ss_pred HHhcCCchhccHHHHHHHHHHHhCCCHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHcc
Confidence 999999999999999999987665544 4555 79999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCccchhhhchHHHHHHHHHhc
Q psy12161 307 NLIWAPVNSQLSLSAISPINSFVYFMFNN 335 (342)
Q Consensus 307 ~L~~~~~~~~~~~~~~~~~~~~v~~lI~~ 335 (342)
+|+|+..++...+... .+++.+|++
T Consensus 157 ~L~~~~~~~~~~~~~~----~~~q~~i~~ 181 (185)
T cd04373 157 TLMRPDFTSMEALSAT----RIYQTIIET 181 (185)
T ss_pred ccCCCCCCCHHHHHcc----HHHHHHHHH
Confidence 9999985554454443 445555554
No 25
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.5e-40 Score=288.35 Aligned_cols=177 Identities=28% Similarity=0.498 Sum_probs=159.2
Q ss_pred ccCCChhHhhhhC----CCCCCcHHHHHHHHHHhCCCC-cccccceeccccHHHHHHHHHHHhcCCCCCCC----C-CHH
Q psy12161 150 QFGASLQHIKDNN----GGDVIAPILRQCVDYLSQPDA-LETEGLFRRSASVALVRQCQTACNNGEPILFH----N-DIH 219 (342)
Q Consensus 150 ~FG~~L~~l~~~~----~~~~iP~vl~~~i~~l~~~~g-l~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~----~-d~~ 219 (342)
+||+||++++++. .+..||.++.+|++||++ +| +.+|||||++|+..+++++++.+++|..+++. . |+|
T Consensus 1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~-~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h 79 (190)
T cd04400 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDK-NRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVH 79 (190)
T ss_pred CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHH-cCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHH
Confidence 6999999999874 246799999999999998 65 79999999999999999999999998766542 2 999
Q ss_pred HHHHHHHHHHHhCCCCCCChHhHHHHHccCCCC-h-hHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCCh
Q psy12161 220 LAAVLLKTFLRELDEPLLTYDLYDEILLFPTLN-K-DERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTW 297 (342)
Q Consensus 220 ~va~llK~fLr~Lp~pLi~~~~~~~~~~~~~~~-~-~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~ 297 (342)
++|+++|.|||+||+||+|.+.|+.+..+.+.. + ++++. .++.++.+||+.|+.+|++++.||++|+.+++.|+||+
T Consensus 80 ~va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~-~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~ 158 (190)
T cd04400 80 TVAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRAL-ELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNL 158 (190)
T ss_pred HHHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCh
Confidence 999999999999999999999999998865543 3 34555 79999999999999999999999999999999999999
Q ss_pred hhhhHhhhcccCCCCCCCccchhhhchHHHHHHHHHhcccccccC
Q psy12161 298 NNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIFII 342 (342)
Q Consensus 298 ~nLa~vfgP~L~~~~~~~~~~~~~~~~~~~~v~~lI~~~~~iF~~ 342 (342)
+|||+||||+|+++. +++..+|+|||.||+.
T Consensus 159 ~NLa~vf~P~L~~~~--------------~~~~~~~~~~~~~f~~ 189 (190)
T cd04400 159 RNVCIVFSPTLNIPA--------------GIFVLFLTDFDCIFGG 189 (190)
T ss_pred HHhhhhcCCCCCCCH--------------HHHHHHHHHHHHHcCC
Confidence 999999999999887 5899999999999963
No 26
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=7.3e-40 Score=286.74 Aligned_cols=164 Identities=26% Similarity=0.466 Sum_probs=148.3
Q ss_pred cCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCC---CCCC-CHHHHHHHHH
Q psy12161 151 FGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPI---LFHN-DIHLAAVLLK 226 (342)
Q Consensus 151 FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~---~~~~-d~~~va~llK 226 (342)
||+||..++.+ ++..||.++.+|+++|++ +|+++|||||++|+..+++++++.+|+|... ++.+ |+|++|++||
T Consensus 1 FGv~L~~~~~r-~~~~IP~iv~~ci~~l~~-~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK 78 (196)
T cd04387 1 FGVKISTVTKR-ERSKVPYIVRQCVEEVER-RGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLK 78 (196)
T ss_pred CCCCHHHHHHh-cCCCCChHHHHHHHHHHH-hCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHH
Confidence 99999999999 677899999999999999 9999999999999999999999999997531 2334 9999999999
Q ss_pred HHHHhCCCCCCChHhHHHHHccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhc
Q psy12161 227 TFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAP 306 (342)
Q Consensus 227 ~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP 306 (342)
.|||+||+||+|.++|+.++++.+.++.+.....++.++.+||+.|+.+|.+++.||++|+++++.||||+.|||+||||
T Consensus 79 ~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P 158 (196)
T cd04387 79 LYFRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGP 158 (196)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHcc
Confidence 99999999999999999999876655544434478999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCc
Q psy12161 307 NLIWAPVNSQ 316 (342)
Q Consensus 307 ~L~~~~~~~~ 316 (342)
+|+|++....
T Consensus 159 ~Llr~~~~~~ 168 (196)
T cd04387 159 TLLRPSEKES 168 (196)
T ss_pred ccCCCCcccc
Confidence 9999995443
No 27
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.3e-40 Score=290.32 Aligned_cols=183 Identities=26% Similarity=0.478 Sum_probs=159.9
Q ss_pred cCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCC-CCCCC-CHHHHHHHHHHH
Q psy12161 151 FGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEP-ILFHN-DIHLAAVLLKTF 228 (342)
Q Consensus 151 FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~-~~~~~-d~~~va~llK~f 228 (342)
||+||++++.+ .++.||.++.+|+++|++ +|+.+|||||++|+...++++++.+|+|.. +++.+ |+|++|++||.|
T Consensus 1 FG~~L~~~~~~-~~~~iP~il~~ci~~ie~-~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK~f 78 (211)
T cd04409 1 FGADFAQVAKK-SPDGIPFIIKKCTSEIES-RALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLKLY 78 (211)
T ss_pred CCCChHHHHHh-CCCCCCcHHHHHHHHHHH-cCCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHHHH
Confidence 99999999998 567899999999999999 999999999999999999999999999874 45555 999999999999
Q ss_pred HHhCCCCCCChHhHHHHHccCCC----Chh------------------HHHHHHHHHHHhhCCccHHHHHHHHHHHHHHH
Q psy12161 229 LRELDEPLLTYDLYDEILLFPTL----NKD------------------ERSRYVKILILEKLPTDNYTVLKYIVTFLSKI 286 (342)
Q Consensus 229 Lr~Lp~pLi~~~~~~~~~~~~~~----~~~------------------~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v 286 (342)
||+||+||+|.++|+.++.+.+. +++ .+....++.++.+||++|+.+|++|+.||++|
T Consensus 79 LReLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V 158 (211)
T cd04409 79 LRQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLHRV 158 (211)
T ss_pred HHhCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875321 100 11122688999999999999999999999999
Q ss_pred hhcCCCCCCChhhhhHhhhcccCCCCCCCc----cchhhhchHHHHHHHHHhc
Q psy12161 287 EDRSDLNKMTWNNLAVVFAPNLIWAPVNSQ----LSLSAISPINSFVYFMFNN 335 (342)
Q Consensus 287 ~~~s~~NkMt~~nLa~vfgP~L~~~~~~~~----~~~~~~~~~~~~v~~lI~~ 335 (342)
+++++.|+||++|||+||||+|+|+..++. .++.++..++.++++||++
T Consensus 159 ~~~s~~NkM~~~NLAivf~P~Llrp~~~~~~~~~~~~~~~~~~~~~ve~li~~ 211 (211)
T cd04409 159 SEQAEENKMSASNLGIIFGPTLIRPRPTDATVSLSSLVDYPHQARLVELLITY 211 (211)
T ss_pred HcccccCCCChHHhhhhccccccCCCCCCcchhHHHHhhhhhHHHHHHHHhhC
Confidence 999999999999999999999999985442 2455778889999999974
No 28
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-39 Score=288.10 Aligned_cols=182 Identities=34% Similarity=0.487 Sum_probs=156.3
Q ss_pred cCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCC---CHHHHHHHHHH
Q psy12161 151 FGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHN---DIHLAAVLLKT 227 (342)
Q Consensus 151 FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~---d~~~va~llK~ 227 (342)
||.+|.+ .+++ .+.+|++||++ |+++|||||++|+..+++.+++.+|+|..+++.. |+|++|++||.
T Consensus 1 ~~~~~~~-------~~~~-~v~~~i~~l~~--gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~ 70 (208)
T cd04392 1 FGAPLTE-------EGIA-QIYQLIEYLEK--NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKG 70 (208)
T ss_pred CCCCccc-------cccH-HHHHHHHHHHh--CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHH
Confidence 6777743 3344 78889999997 9999999999999999999999999999888753 89999999999
Q ss_pred HHHhCCCCCCChHhHHHHHccCC------------CChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCC
Q psy12161 228 FLRELDEPLLTYDLYDEILLFPT------------LNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKM 295 (342)
Q Consensus 228 fLr~Lp~pLi~~~~~~~~~~~~~------------~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkM 295 (342)
|||+||+||+|.+.|+.++++.+ ..+.++....++.++.+||++|+.+|++|+.||++|+++++.|||
T Consensus 71 flReLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 150 (208)
T cd04392 71 FLGELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKM 150 (208)
T ss_pred HHHhCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 99999999999999999876422 123333333789999999999999999999999999999999999
Q ss_pred ChhhhhHhhhcccCCCCCCCccch-hhhchHHHHHHHHHhcccccccC
Q psy12161 296 TWNNLAVVFAPNLIWAPVNSQLSL-SAISPINSFVYFMFNNYHSIFII 342 (342)
Q Consensus 296 t~~nLa~vfgP~L~~~~~~~~~~~-~~~~~~~~~v~~lI~~~~~iF~~ 342 (342)
|+.|||+||||+|+|++..+...+ .+....+.++++||+||++||.+
T Consensus 151 ~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~iF~~ 198 (208)
T cd04392 151 SADNLALLFTPHLICPRNLTPEDLHENAQKLNSIVTFMIKHSQKLFKA 198 (208)
T ss_pred CHHHHHHHhCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999885444433 44567889999999999999975
No 29
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.7e-39 Score=285.07 Aligned_cols=186 Identities=25% Similarity=0.414 Sum_probs=158.6
Q ss_pred cCCChhHhhhhC-CCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCC-CCCCC--C--CHHHHHHH
Q psy12161 151 FGASLQHIKDNN-GGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGE-PILFH--N--DIHLAAVL 224 (342)
Q Consensus 151 FG~~L~~l~~~~-~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~-~~~~~--~--d~~~va~l 224 (342)
||+||+.++.++ ++..||.++.+|++||++ +|+.+|||||++|+..+++.+++.+++|. .+++. . |+|++|++
T Consensus 1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~-~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~l 79 (207)
T cd04379 1 FGVPLSRLVEREGESRDVPIVLQKCVQEIER-RGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGV 79 (207)
T ss_pred CCCChHHHHhhcCCCCCcChHHHHHHHHHHH-cCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHH
Confidence 899999999985 457899999999999999 99999999999999999999999999875 34433 2 89999999
Q ss_pred HHHHHHhCCCCCCChHhHHHHHccCCCC---hhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhh
Q psy12161 225 LKTFLRELDEPLLTYDLYDEILLFPTLN---KDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLA 301 (342)
Q Consensus 225 lK~fLr~Lp~pLi~~~~~~~~~~~~~~~---~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa 301 (342)
||.|||+||+||+|.++|+.++++.... +.+.....++.++.+||+.|+.+|++++.||++|+++++.||||++|||
T Consensus 80 LK~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLA 159 (207)
T cd04379 80 LKDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLA 159 (207)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhH
Confidence 9999999999999999999999864432 2222222578899999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCCCCc-c-----------chhhhchHHHHHHHHHhccc
Q psy12161 302 VVFAPNLIWAPVNSQ-L-----------SLSAISPINSFVYFMFNNYH 337 (342)
Q Consensus 302 ~vfgP~L~~~~~~~~-~-----------~~~~~~~~~~~v~~lI~~~~ 337 (342)
+||||+|++++..+. . +..+......++++||+-|.
T Consensus 160 ivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (207)
T cd04379 160 VCFGPVLMFCSQEFSRYGISPTSKMAAVSTVDFKQHIEVLHYLLQIWP 207 (207)
T ss_pred HhhccccCCCCcccccccCCCCccccccchhhHHHHHHHHHHHHHhcC
Confidence 999999999996442 1 12344556788999998774
No 30
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=3.8e-39 Score=280.83 Aligned_cols=181 Identities=29% Similarity=0.530 Sum_probs=163.0
Q ss_pred cCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCC-CCCCCC-CHHHHHHHHHHH
Q psy12161 151 FGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGE-PILFHN-DIHLAAVLLKTF 228 (342)
Q Consensus 151 FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~-~~~~~~-d~~~va~llK~f 228 (342)
||+||+.++.+ +..||.++.+|++||++ +|+++|||||++|+..+++++++.+|+|. .+++++ |+|++|++||+|
T Consensus 1 FG~~L~~~~~~--~~~vP~~l~~~~~~l~~-~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK~f 77 (186)
T cd04377 1 FGVSLSSLTSE--DRSVPLVLEKLLEHIEM-HGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLKQW 77 (186)
T ss_pred CCCCHHHHHhC--CCCCChHHHHHHHHHHH-cCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHHHH
Confidence 89999999864 57899999999999998 99999999999999999999999999984 566666 999999999999
Q ss_pred HHhCCCCCCChHhHHHHHccCCCChh-HHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhcc
Q psy12161 229 LRELDEPLLTYDLYDEILLFPTLNKD-ERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPN 307 (342)
Q Consensus 229 Lr~Lp~pLi~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP~ 307 (342)
||+||+||+|.+.|++++...+.++. +++. .++.++.+||+.|+.+|.+++.||++|+.+++.|+||++|||+||||+
T Consensus 78 lr~LpepLi~~~~~~~~~~~~~~~~~~~~i~-~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~ 156 (186)
T cd04377 78 LRELPEPLMTFELYENFLRAMELEEKQERVR-ALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPC 156 (186)
T ss_pred HHcCCCccCCHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhH
Confidence 99999999999999999986665544 4555 789999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCc--cchhhhchHHHHHHHHHhc
Q psy12161 308 LIWAPVNSQ--LSLSAISPINSFVYFMFNN 335 (342)
Q Consensus 308 L~~~~~~~~--~~~~~~~~~~~~v~~lI~~ 335 (342)
|+|++.+.. ..+.++...+.++++||+.
T Consensus 157 ll~~~~~~~~~~~~~d~~~~~~~~e~li~~ 186 (186)
T cd04377 157 ILRCPDTADPLQSLQDVSKTTTCVETLIKE 186 (186)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHHHHhhC
Confidence 999883221 4677888899999999973
No 31
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.4e-39 Score=280.15 Aligned_cols=179 Identities=29% Similarity=0.403 Sum_probs=156.6
Q ss_pred cCCChhHhhhhC----CCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHH
Q psy12161 151 FGASLQHIKDNN----GGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHN-DIHLAAVLL 225 (342)
Q Consensus 151 FG~~L~~l~~~~----~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~-d~~~va~ll 225 (342)
||+||++++.++ ++..||.++..|++++.+.+|+++|||||++|+..+++++++.+|+|+...... |+|++|++|
T Consensus 1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~d~h~va~lL 80 (187)
T cd04389 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSGLEDPHVPASLL 80 (187)
T ss_pred CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCccccCCHHHHHHHH
Confidence 899999998775 346799999999999865489999999999999999999999999987433233 999999999
Q ss_pred HHHHHhCCCCCCChHhHHHHHccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhc--CCCCCCChhhhhHh
Q psy12161 226 KTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDR--SDLNKMTWNNLAVV 303 (342)
Q Consensus 226 K~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~--s~~NkMt~~nLa~v 303 (342)
|.|||+||+||+|.+.|++++...+. .+ .++.++.+||+.|+.+|.+++.||++|+.+ ++.||||++|||+|
T Consensus 81 K~fLReLpePli~~~~~~~~i~~~~~-----~~-~~~~li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAiv 154 (187)
T cd04389 81 KLWLRELEEPLIPDALYQQCISASED-----PD-KAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMV 154 (187)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhcC-----HH-HHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Confidence 99999999999999999999875432 12 467789999999999999999999999975 47899999999999
Q ss_pred hhcccCCCCCCCc-cchhhhchHHHHHHHHHhc
Q psy12161 304 FAPNLIWAPVNSQ-LSLSAISPINSFVYFMFNN 335 (342)
Q Consensus 304 fgP~L~~~~~~~~-~~~~~~~~~~~~v~~lI~~ 335 (342)
|||+|+|+..++. ..+++......+++.||+|
T Consensus 155 f~P~l~~~~~~~~~~~~~~~~~~~~~~~~lI~~ 187 (187)
T cd04389 155 FAPNILRCTSDDPRVIFENTRKEMSFLRTLIEH 187 (187)
T ss_pred HccccCCCCCCCHHHHHHccHHHHHHHHHHhcC
Confidence 9999999886665 4567788899999999987
No 32
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.7e-38 Score=281.50 Aligned_cols=187 Identities=19% Similarity=0.225 Sum_probs=160.7
Q ss_pred cCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCC--ccc----ccceeccccHHHHHHHHHHHhcCCCCCC-----CC-CH
Q psy12161 151 FGASLQHIKDNNGGDVIAPILRQCVDYLSQPDA--LET----EGLFRRSASVALVRQCQTACNNGEPILF-----HN-DI 218 (342)
Q Consensus 151 FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~g--l~~----egIFR~~g~~~~v~~l~~~~~~g~~~~~-----~~-d~ 218 (342)
||+||+.++.+ ++..||.++.+|++||++ +| +.. +||||++|+...++.|++.+|+|...+. .+ |+
T Consensus 1 FGv~L~~~~~~-~~~~VP~vV~~ci~~ie~-~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv 78 (212)
T cd04399 1 FGVDLETRCRL-DKKVVPLIVSAILSYLDQ-LYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEP 78 (212)
T ss_pred CCCcHHHHHhh-cCCCCCHHHHHHHHHHHH-hCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCH
Confidence 99999999998 667899999999999998 54 332 3999999999999999999999876543 34 89
Q ss_pred HHHHHHHHHHHHhCCCCCCChHhHHHHHccC------CCC-hhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCC
Q psy12161 219 HLAAVLLKTFLRELDEPLLTYDLYDEILLFP------TLN-KDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSD 291 (342)
Q Consensus 219 ~~va~llK~fLr~Lp~pLi~~~~~~~~~~~~------~~~-~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~ 291 (342)
|++|++||.|||+||+||+|.++|+.+.++. +.+ .++++. .++.++.+||+.|+.+|++|+.||++|++++.
T Consensus 79 ~~va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~-~l~~~l~~LP~~n~~~L~~li~hL~rv~~~~~ 157 (212)
T cd04399 79 STVASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQ-GLQSTLSQLPKSHIATLDAIITHFYRLIEITK 157 (212)
T ss_pred HHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999987642 122 344555 89999999999999999999999999998876
Q ss_pred CC---CCChhhhhHhhhcccCCCCCCCccchhhhchHHHHHHHHHhccccccc
Q psy12161 292 LN---KMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIFI 341 (342)
Q Consensus 292 ~N---kMt~~nLa~vfgP~L~~~~~~~~~~~~~~~~~~~~v~~lI~~~~~iF~ 341 (342)
.| ||+++|||+|||||++|+..+.. ...+...++.+++.||+||++||.
T Consensus 158 ~~~~~kM~~~nLa~vfgp~llr~~~~~~-~~~~~~~~~~~~e~Li~~~~~iF~ 209 (212)
T cd04399 158 MGESEEEYADKLATSLSREILRPIIESL-LTIGDKHGYKFFRDLLTHKDQIFS 209 (212)
T ss_pred cccccccCHHHHHHHhhhhhcCCCcccc-cccccHHHHHHHHHHHHhHHHhcc
Confidence 65 69999999999999999985443 334456778999999999999995
No 33
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=2.3e-38 Score=276.58 Aligned_cols=175 Identities=27% Similarity=0.412 Sum_probs=157.0
Q ss_pred CCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCC-CCCC-CHHHHHHHHHHHHHhCCCCCCChH
Q psy12161 163 GGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPI-LFHN-DIHLAAVLLKTFLRELDEPLLTYD 240 (342)
Q Consensus 163 ~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~-~~~~-d~~~va~llK~fLr~Lp~pLi~~~ 240 (342)
.+..||.++.+|+++|++ +|+.+|||||++|+..+++++++.+++|+.+ ++.+ |+|++|++||.|||+||+||+|.+
T Consensus 13 ~~~~IP~~l~~ci~~ie~-~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~~~ 91 (193)
T cd04382 13 TSPMIPALIVHCVNEIEA-RGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITFA 91 (193)
T ss_pred CCCCccHHHHHHHHHHHH-cCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCCHH
Confidence 567899999999999999 9999999999999999999999999998755 5555 999999999999999999999999
Q ss_pred hHHHHHccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhcccCCCCCCC---cc
Q psy12161 241 LYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNS---QL 317 (342)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP~L~~~~~~~---~~ 317 (342)
.|+.++++.+..+.++....++.++..||+.|+.+|.+++.||++|+. ++.||||++|||+||||+|++.+..+ ..
T Consensus 92 ~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~~~~~ 170 (193)
T cd04382 92 LWKEFMEAAEILDEDNSRAALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNPDPMT 170 (193)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCccHHH
Confidence 999999976666555444479999999999999999999999999999 99999999999999999999987433 35
Q ss_pred chhhhchHHHHHHHHHhccccc
Q psy12161 318 SLSAISPINSFVYFMFNNYHSI 339 (342)
Q Consensus 318 ~~~~~~~~~~~v~~lI~~~~~i 339 (342)
.+.++..++.+++.||++.++.
T Consensus 171 ~~~~~~~~~~vve~Li~~~~~~ 192 (193)
T cd04382 171 ILQDTVRQPRVVERLLEIPSDY 192 (193)
T ss_pred HHHHhHHHHHHHHHHHhCCccc
Confidence 6677888899999999998764
No 34
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.8e-37 Score=269.64 Aligned_cols=179 Identities=27% Similarity=0.440 Sum_probs=157.2
Q ss_pred CCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCC---CCCCCC-CHHHHHHHHHH
Q psy12161 152 GASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGE---PILFHN-DIHLAAVLLKT 227 (342)
Q Consensus 152 G~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~---~~~~~~-d~~~va~llK~ 227 (342)
|.+|+..... +..||.++.+|++||++ +|+.+|||||++|+...++++++.++.+. .++.++ |+|++|+++|.
T Consensus 2 ~~~l~~~~~~--~~~iP~~v~~~i~~l~~-~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~ 78 (184)
T cd04385 2 GPALEDQQLT--DNDIPVIVDKCIDFITQ-HGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKR 78 (184)
T ss_pred CccHHHhhhC--CCCCChHHHHHHHHHHH-hCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHH
Confidence 6677766544 57899999999999999 99999999999999999999999998854 233344 99999999999
Q ss_pred HHHhCCCCCCChHhHHHHHccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhcc
Q psy12161 228 FLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPN 307 (342)
Q Consensus 228 fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP~ 307 (342)
|||+||+||+|.+.|+.++.+.+..+.+.....++.++.+||+.|+.+|.+++.||++|+.+++.|+||++|||+||||+
T Consensus 79 yLreLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ 158 (184)
T cd04385 79 FLRDLPDPLLTSELHAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPT 158 (184)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccc
Confidence 99999999999999999998766555443333799999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccchhhhchHHHHHHHHHhcc
Q psy12161 308 LIWAPVNSQLSLSAISPINSFVYFMFNNY 336 (342)
Q Consensus 308 L~~~~~~~~~~~~~~~~~~~~v~~lI~~~ 336 (342)
|+|++.+ +..+.....++++.||+||
T Consensus 159 ll~~~~~---~~~~~~~~~~v~~~Li~~~ 184 (184)
T cd04385 159 LFQTDEH---SVGQTSHEVKVIEDLIDNY 184 (184)
T ss_pred cCCCCcc---chhHHHHHHHHHHHHHhcC
Confidence 9999933 5556667889999999997
No 35
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2e-37 Score=272.44 Aligned_cols=168 Identities=26% Similarity=0.422 Sum_probs=149.0
Q ss_pred CCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHH-HhcC----CCCCCCC---CHHHHHHHHHHHHHhCCCCCC
Q psy12161 166 VIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTA-CNNG----EPILFHN---DIHLAAVLLKTFLRELDEPLL 237 (342)
Q Consensus 166 ~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~-~~~g----~~~~~~~---d~~~va~llK~fLr~Lp~pLi 237 (342)
.-+.++.+|+++|++ +|+++|||||++|+...++++++. ++.| ..+++.+ |+|++|++||.|||+||+||+
T Consensus 27 ~~~~iv~~ci~~le~-~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi 105 (203)
T cd04374 27 IGFKFVRKCIEAVET-RGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLM 105 (203)
T ss_pred ccHHHHHHHHHHHHH-cCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcC
Confidence 345689999999999 999999999999999999999875 5654 2355543 899999999999999999999
Q ss_pred ChHhHHHHHccCCCChh-HHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhcccCCCCCCCc
Q psy12161 238 TYDLYDEILLFPTLNKD-ERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQ 316 (342)
Q Consensus 238 ~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP~L~~~~~~~~ 316 (342)
|.++|+.++.+.+.++. +++. .++.++.+||+.|+.+|++|+.||++|+++++.||||+.|||+||||+|+|+..++.
T Consensus 106 ~~~~y~~~i~~~~~~~~~~ri~-~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~~ 184 (203)
T cd04374 106 TYELHNDFINAAKSENLESRVN-AIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEETV 184 (203)
T ss_pred CHHHHHHHHHHHhCCCHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCccH
Confidence 99999999997666554 4555 799999999999999999999999999999999999999999999999999995555
Q ss_pred cchhhhchHHHHHHHHHhc
Q psy12161 317 LSLSAISPINSFVYFMFNN 335 (342)
Q Consensus 317 ~~~~~~~~~~~~v~~lI~~ 335 (342)
..+.++..++.+++.||+|
T Consensus 185 ~~~~~~~~~~~vve~LIeN 203 (203)
T cd04374 185 AAIMDIKFQNIVVEILIEN 203 (203)
T ss_pred HHHHHhHHHHHHhhhHhcC
Confidence 6678888899999999997
No 36
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=4.5e-37 Score=267.71 Aligned_cols=167 Identities=19% Similarity=0.330 Sum_probs=146.2
Q ss_pred CCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcC-CCCCCCC-CHHHHHHHHHHHHHhCCCCCCChH
Q psy12161 163 GGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNG-EPILFHN-DIHLAAVLLKTFLRELDEPLLTYD 240 (342)
Q Consensus 163 ~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g-~~~~~~~-d~~~va~llK~fLr~Lp~pLi~~~ 240 (342)
+.+.+|.++.+|+++|++ +|++.|||||++|+.. +.++++.++++ ..++++. |+|++|++||.|||+||+||+|.+
T Consensus 11 ~~~~~P~iv~~ci~~IE~-~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReLPePLip~~ 88 (200)
T cd04388 11 PPDVAPPLLIKLVEAIEK-KGLESSTLYRTQSSSS-LTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPNPVIPAP 88 (200)
T ss_pred CCCCCCHHHHHHHHHHHH-hCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhCCCccCCHH
Confidence 458899999999999999 9999999999999875 67899999985 4677766 999999999999999999999999
Q ss_pred hHHHHHccC-CCChh-HHHHHHHHHHHh--hCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhcccCCCCCCCc
Q psy12161 241 LYDEILLFP-TLNKD-ERSRYVKILILE--KLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQ 316 (342)
Q Consensus 241 ~~~~~~~~~-~~~~~-~~~~~~~~~ll~--~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP~L~~~~~~~~ 316 (342)
.|++++.++ +..+. +++. .++.++. .||+.|+.+|+||+.||++|+++++.|+||++|||+||||+|+|++..
T Consensus 89 ~y~~fi~~~~~~~~~~~~~~-~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~~~~-- 165 (200)
T cd04388 89 VYSEMISRAQEVQSSDEYAQ-LLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQPA-- 165 (200)
T ss_pred HHHHHHHHHHccCCHHHHHH-HHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCCCcc--
Confidence 999999864 34433 3444 7888887 899999999999999999999999999999999999999999999943
Q ss_pred cchhhhchHHHHHHHHHhc
Q psy12161 317 LSLSAISPINSFVYFMFNN 335 (342)
Q Consensus 317 ~~~~~~~~~~~~v~~lI~~ 335 (342)
+..+......+++.||.+
T Consensus 166 -~~~~~~~~~~vvE~Li~~ 183 (200)
T cd04388 166 -SSDSPEFHIRIIEVLITS 183 (200)
T ss_pred -cccchhhHHHHHHHHHHH
Confidence 334455678899988875
No 37
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=100.00 E-value=3.9e-34 Score=246.97 Aligned_cols=169 Identities=36% Similarity=0.598 Sum_probs=153.5
Q ss_pred CCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCC--CCC-CHHHHHHHHHHHHHhCCCCCCChHhH
Q psy12161 166 VIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPIL--FHN-DIHLAAVLLKTFLRELDEPLLTYDLY 242 (342)
Q Consensus 166 ~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~--~~~-d~~~va~llK~fLr~Lp~pLi~~~~~ 242 (342)
.||.++.+|++||++ +|+++|||||.+|+..+++++++.+++|...+ +.. |+|++|+++|.|||+||+||+|.+.|
T Consensus 2 ~vP~~l~~~~~~l~~-~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~ 80 (174)
T smart00324 2 PIPIIVEKCIEYLEK-RGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELY 80 (174)
T ss_pred CCChHHHHHHHHHHH-cCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 589999999999999 99999999999999999999999999998766 445 99999999999999999999999999
Q ss_pred HHHHccCCCChh-HHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhcccCCCCCCCccchhh
Q psy12161 243 DEILLFPTLNKD-ERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSA 321 (342)
Q Consensus 243 ~~~~~~~~~~~~-~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP~L~~~~~~~~~~~~~ 321 (342)
+.++.+.+..+. ++.. .++.++.+||+.|+.+|.+++.||++|+.+++.|+||++|||+||||+|+|++..+......
T Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~~~~~~~ 159 (174)
T smart00324 81 EEFIEAAKVEDETERLR-ALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEVASLKD 159 (174)
T ss_pred HHHHHHHhCCCHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcccHHHHHH
Confidence 999986654444 4445 79999999999999999999999999999999999999999999999999999544445777
Q ss_pred hchHHHHHHHHHhcc
Q psy12161 322 ISPINSFVYFMFNNY 336 (342)
Q Consensus 322 ~~~~~~~v~~lI~~~ 336 (342)
.+..+.++++||+|.
T Consensus 160 ~~~~~~~i~~li~~~ 174 (174)
T smart00324 160 IRHQNTVVETLIENA 174 (174)
T ss_pred HHHHHHHHHHHHhcC
Confidence 888999999999973
No 38
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=100.00 E-value=2.6e-33 Score=250.16 Aligned_cols=164 Identities=26% Similarity=0.371 Sum_probs=144.2
Q ss_pred CCCccCCChhHhhhhC---------------------CCCCCcHHHHHHHHHHhCCCCcccccceeccccHHH----HHH
Q psy12161 147 PTQQFGASLQHIKDNN---------------------GGDVIAPILRQCVDYLSQPDALETEGLFRRSASVAL----VRQ 201 (342)
Q Consensus 147 ~~~~FG~~L~~l~~~~---------------------~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~----v~~ 201 (342)
..++||.+|+.+...+ ....||.++.+|++||++ +|+.+|||||++|+... +++
T Consensus 9 ~~s~fG~sl~~L~~~~~p~~~~~~~~~~~~~~~~~~~~~~~iP~~l~~~i~~L~~-~gl~~eGiFR~~G~~~~~~~~i~~ 87 (220)
T cd04380 9 LPSCFGSSLETLIRLPDPGIRNLIDQLELGDNPDYSEVPLSIPKEIWRLVDYLYT-RGLAQEGLFEEPGLPSEPGELLAE 87 (220)
T ss_pred ecccccccHHHHhcCCchHhhccccccccccCCCCCCCccccCHHHHHHHHHHHH-cCCcccCcccCCCcccchHHHHHH
Confidence 4578999999887733 124699999999999999 99999999999999999 999
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHHHhCCCCCCChHhHHHHHccCCCChhHHHHHHHHHHHh-hCCccHHHHHHHHH
Q psy12161 202 CQTACNNGEPILFHNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILE-KLPTDNYTVLKYIV 280 (342)
Q Consensus 202 l~~~~~~g~~~~~~~d~~~va~llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~-~Lp~~n~~~L~~l~ 280 (342)
+++.+|+|.......|+|++|++||.|||+||+||+|.++|+.++.+...+. . .++.++. +||+.|+.+|.||+
T Consensus 88 l~~~ld~~~~~~~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~~~~~----~-~~~~ll~~~LP~~n~~~l~~L~ 162 (220)
T cd04380 88 IRDALDTGSPFNSPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAVANNE----E-DKRQVIRISLPPVHRNVFVYLC 162 (220)
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCcH----H-HHHHHHHhhCCHHHHHHHHHHH
Confidence 9999999987653239999999999999999999999999999998752221 2 4667888 99999999999999
Q ss_pred HHHHHHhhcCCCCCCChhhhhHhhhcccCCCCCCCc
Q psy12161 281 TFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQ 316 (342)
Q Consensus 281 ~~l~~v~~~s~~NkMt~~nLa~vfgP~L~~~~~~~~ 316 (342)
.||++|+++++.|+||++|||+||||+|+|++.+.+
T Consensus 163 ~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~~~~ 198 (220)
T cd04380 163 SFLRELLSESADRGLDENTLATIFGRVLLRDPPRAG 198 (220)
T ss_pred HHHHHHHHHHHhhCCCHHHhHHHhcchhccCCcccc
Confidence 999999999999999999999999999999995443
No 39
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=100.00 E-value=4.6e-32 Score=232.39 Aligned_cols=167 Identities=38% Similarity=0.672 Sum_probs=149.2
Q ss_pred cHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCC-CCCC-CHHHHHHHHHHHHHhCCCCCCChHhHHHH
Q psy12161 168 APILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPI-LFHN-DIHLAAVLLKTFLRELDEPLLTYDLYDEI 245 (342)
Q Consensus 168 P~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~-~~~~-d~~~va~llK~fLr~Lp~pLi~~~~~~~~ 245 (342)
|.++.+|++||++ +|+++|||||.+|+..+++++++.++.|... +..+ |++++|+++|.|||+||+||+|.+.|+.+
T Consensus 1 P~~l~~~~~~l~~-~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~ 79 (169)
T cd00159 1 PLIIEKCIEYLEK-NGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEF 79 (169)
T ss_pred ChHHHHHHHHHHH-cCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHH
Confidence 7899999999999 9999999999999999999999999999876 3444 99999999999999999999999999999
Q ss_pred HccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhcccCCCCCCCccchhhhchH
Q psy12161 246 LLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPI 325 (342)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP~L~~~~~~~~~~~~~~~~~ 325 (342)
+.+....+.+.....++.++.+||+.|+.+|.+++.||++|+.+++.|+||++|||+||||+|+++...+..........
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~~~~~~~~~~~ 159 (169)
T cd00159 80 IELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSDDELLEDIKKL 159 (169)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCccHHHHHHhHHH
Confidence 98655444443333799999999999999999999999999999999999999999999999999995543455667788
Q ss_pred HHHHHHHHhc
Q psy12161 326 NSFVYFMFNN 335 (342)
Q Consensus 326 ~~~v~~lI~~ 335 (342)
..++++||.|
T Consensus 160 ~~~~~~li~~ 169 (169)
T cd00159 160 NEIVEFLIEN 169 (169)
T ss_pred HHHHHHHHhC
Confidence 9999999975
No 40
>KOG4407|consensus
Probab=100.00 E-value=1.3e-32 Score=278.65 Aligned_cols=195 Identities=27% Similarity=0.408 Sum_probs=176.0
Q ss_pred CCCCCccCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCC---CCCCCC----C
Q psy12161 145 YSPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGE---PILFHN----D 217 (342)
Q Consensus 145 ~~~~~~FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~---~~~~~~----d 217 (342)
..+-++|||+|.++.-..-.+.||.+|..|+..++. +|+++.||||++||...|..|++.+|.+. .++..+ |
T Consensus 1152 ~~~~~~~GVrl~dCP~~~~n~yVP~iV~~C~~vVEt-~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrD 1230 (1973)
T KOG4407|consen 1152 GAPQPVLGVRLADCPTGSCNDYVPMIVQACVCVVET-YGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRD 1230 (1973)
T ss_pred cCcCcccccccccCCcccccccchHHHHHHHHHHhh-cCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhh
Confidence 345679999999875544668999999999999999 99999999999999999999999999973 233222 9
Q ss_pred HHHHHHHHHHHHHhCCCCCCChHhHHHHHccCCCCh-hHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy12161 218 IHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNK-DERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMT 296 (342)
Q Consensus 218 ~~~va~llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt 296 (342)
+++|.++||.|||.|||||+|..+|..|+++.+..+ .+++. .++.++.+||.++|++|++|+.||.+|+.|+++|||-
T Consensus 1231 vNVVSSLLK~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~-~Lr~l~~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkME 1309 (1973)
T KOG4407|consen 1231 VNVVSSLLKMFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLH-KLRNLLRKLPRHHYETLKFLIVHLSEVTKNSDVNKME 1309 (1973)
T ss_pred hHHHHHHHHHHHHhCCcccccccchhhhhhhcccccHHHHHH-HHHHHHHhCccchHHHHHHHHHHHHHHhccccccccc
Confidence 999999999999999999999999999999888776 67888 8999999999999999999999999999999999999
Q ss_pred hhhhhHhhhcccCCCCCCCcc-chhhhchHHHHHHHHHhccccccc
Q psy12161 297 WNNLAVVFAPNLIWAPVNSQL-SLSAISPINSFVYFMFNNYHSIFI 341 (342)
Q Consensus 297 ~~nLa~vfgP~L~~~~~~~~~-~~~~~~~~~~~v~~lI~~~~~iF~ 341 (342)
..|||++|||+++|++.|++. .+.+|..+.++|+.||.+||++|+
T Consensus 1310 prNLAi~FGPsiVRts~Dnm~tmVthM~dQckIVEtLI~~~dwfF~ 1355 (1973)
T KOG4407|consen 1310 PRNLAIMFGPSIVRTSDDNMATMVTHMSDQCKIVETLIHYNDWFFD 1355 (1973)
T ss_pred ccceeEEeccceeccCCccHHHHhhcchhhhhHHHHHHhhhhheec
Confidence 999999999999999965553 457788999999999999999995
No 41
>KOG2200|consensus
Probab=100.00 E-value=1.3e-32 Score=262.77 Aligned_cols=194 Identities=25% Similarity=0.359 Sum_probs=170.5
Q ss_pred CCCCccCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCC---CCCCCC-CHHHH
Q psy12161 146 SPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGE---PILFHN-DIHLA 221 (342)
Q Consensus 146 ~~~~~FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~---~~~~~~-d~~~v 221 (342)
..+.+|||||..++++ ++..+|.++.+.++||++ +|++++||||++|....|+.|++.++..- .+.|+. ..|++
T Consensus 296 kd~~vFGVPL~vll~r-tG~~lP~~iQq~m~~lr~-~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~Dv 373 (674)
T KOG2200|consen 296 KDGGVFGVPLTVLLQR-TGQPLPLSIQQAMRYLRE-RGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDV 373 (674)
T ss_pred CCCceeecCceeeecc-CCCcCcHHHHHHHHHHHH-hCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHH
Confidence 4678999999999998 788999999999999999 99999999999999999999999988722 366776 99999
Q ss_pred HHHHHHHHHhCCCCCCChHhHHHHHccCCCCh-hHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhh
Q psy12161 222 AVLLKTFLRELDEPLLTYDLYDEILLFPTLNK-DERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNL 300 (342)
Q Consensus 222 a~llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nL 300 (342)
|.+||.|||+||+||++.++.+.|..+.+... ++++. +++.++-.||.+||++|+.|+.||++|+.++++|+||+.||
T Consensus 374 AdlLKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlq-Al~~aillLPDeNReaLktLL~FL~~V~an~e~N~MT~~Nl 452 (674)
T KOG2200|consen 374 ADLLKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQ-ALQLAILLLPDENREALKTLLEFLNDVIANEEENQMTLMNL 452 (674)
T ss_pred HHHHHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHH-HHHHHHHhCCcccHHHHHHHHHHHHHHHHhHhhcccchhhh
Confidence 99999999999999999999999999766654 44555 89999999999999999999999999999999999999999
Q ss_pred hHhhhcccCCCCCCC------------------ccchhhhchHHHHHHHHHhcccccccC
Q psy12161 301 AVVFAPNLIWAPVNS------------------QLSLSAISPINSFVYFMFNNYHSIFII 342 (342)
Q Consensus 301 a~vfgP~L~~~~~~~------------------~~~~~~~~~~~~~v~~lI~~~~~iF~~ 342 (342)
|+||||+||...... +..+......+..+..||+..+.+|.|
T Consensus 453 svcmAPsLF~l~~~~~d~spr~~~~k~~~g~p~~kel~~a~aaa~~l~~mI~y~k~Lf~V 512 (674)
T KOG2200|consen 453 SVCMAPSLFHLNALKLDSSPRVRQKKSETGKPDQKELNEALAAAQGLAHMIKYQKLLFTV 512 (674)
T ss_pred hhhhcchHHhhccCCCCCCccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999765311 111333345578899999999999976
No 42
>KOG1450|consensus
Probab=99.97 E-value=4e-31 Score=259.23 Aligned_cols=196 Identities=25% Similarity=0.410 Sum_probs=175.3
Q ss_pred CCCCCCccCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCC----CHH
Q psy12161 144 TYSPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHN----DIH 219 (342)
Q Consensus 144 ~~~~~~~FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~----d~~ 219 (342)
.+...++||++|+.+|.+ .+..||.+|..|++.++. .|++.+||||++|+...+..++..+|.....++.. |+|
T Consensus 450 ~~k~~~vFGs~Lealc~r-E~~~vP~~V~~c~~~IE~-~GLd~~GiYRVsgnl~~Vnklr~~~d~d~~l~l~~~~~~dih 527 (650)
T KOG1450|consen 450 KPKFDKVFGSPLEALCQR-ENGLVPKIVRLCIEHIEK-FGLDSDGIYRVSGNLASVNKLREQSDQDNSLDLADDRWDDIH 527 (650)
T ss_pred ccccCcccCccHHHHhhc-cCCCcchHHHHHHHHHhh-hcccCCceeeecchHHHHHHHHHhcCccccccccccchhHHH
Confidence 355679999999999999 678899999999999999 99999999999999999999999999766555544 999
Q ss_pred HHHHHHHHHHHhCCCCCCChHhHHHHHccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhh
Q psy12161 220 LAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNN 299 (342)
Q Consensus 220 ~va~llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~n 299 (342)
+|+++||.||||||+||+|..+...|..+....+..........++..||++|+.|+++|+.||++|..|++.|||+.+|
T Consensus 528 ai~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li~~lP~~n~~Tlr~lv~HL~rv~shs~kNrMs~~N 607 (650)
T KOG1450|consen 528 AITGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELIGLLPDANYQTLRYLVRHLRRVLSHSDKNRMSRHN 607 (650)
T ss_pred HHHHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhccccccccccc
Confidence 99999999999999999999999999998776554444447899999999999999999999999999999999999999
Q ss_pred hhHhhhcccCCCCCCCccchhhhchHHHHHHHHHhccccccc
Q psy12161 300 LAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIFI 341 (342)
Q Consensus 300 La~vfgP~L~~~~~~~~~~~~~~~~~~~~v~~lI~~~~~iF~ 341 (342)
||+||||+++++..........+..+..+++.||++...+|+
T Consensus 608 LaIVfgpTl~~~~~~~~~~a~~~~~~~~ivq~lle~~~~~f~ 649 (650)
T KOG1450|consen 608 LAIVFGPTLIKPEQETSSEAIHSTYQSQIVQLLLENVSSAFG 649 (650)
T ss_pred eEEEeccccccccccccchhhHHhHHHHHHHHHHHhhHhhcc
Confidence 999999999998744344445566778999999999999996
No 43
>KOG4269|consensus
Probab=99.97 E-value=1.6e-31 Score=264.34 Aligned_cols=168 Identities=26% Similarity=0.400 Sum_probs=149.0
Q ss_pred CCCCCccCCChhHhhhhC---CCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCC----CC-
Q psy12161 145 YSPTQQFGASLQHIKDNN---GGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILF----HN- 216 (342)
Q Consensus 145 ~~~~~~FG~~L~~l~~~~---~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~----~~- 216 (342)
-..+++||.++..-+... ....+|.++++|++||++.+|++.|||||.+|+...++.|++.||.|-.-++ ++
T Consensus 894 ~~qTgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E~ 973 (1112)
T KOG4269|consen 894 VKQTGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSEM 973 (1112)
T ss_pred ceeceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhccccc
Confidence 456799997665432211 5678999999999999955999999999999999999999999999843333 23
Q ss_pred CHHHHHHHHHHHHHhCCCCCCChHhHHHHHccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy12161 217 DIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMT 296 (342)
Q Consensus 217 d~~~va~llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt 296 (342)
|+|++||+||+|||+||+||++.+.|..|......++....+.++..++.+||++|..++.+|+.||++|++++.+|||+
T Consensus 974 dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li~slP~aNl~l~~~LlehL~RI~e~ekvNKMn 1053 (1112)
T KOG4269|consen 974 DVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLISSLPPANLALFLFLLEHLKRIAEKEKVNKMN 1053 (1112)
T ss_pred cHHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999997777777777768999999999999999999999999999999999999
Q ss_pred hhhhhHhhhcccCCCC
Q psy12161 297 WNNLAVVFAPNLIWAP 312 (342)
Q Consensus 297 ~~nLa~vfgP~L~~~~ 312 (342)
++|||+||||+|.+|.
T Consensus 1054 lrNlciVFsPTLniPs 1069 (1112)
T KOG4269|consen 1054 LRNLCIVFSPTLNIPS 1069 (1112)
T ss_pred ccceeeeecccccCcH
Confidence 9999999999999999
No 44
>KOG4270|consensus
Probab=99.97 E-value=1.3e-30 Score=255.01 Aligned_cols=194 Identities=29% Similarity=0.486 Sum_probs=163.4
Q ss_pred CCCCccCCChhHhhhhC--CCCCCcHHHHHHHH-HHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCC-CHHHH
Q psy12161 146 SPTQQFGASLQHIKDNN--GGDVIAPILRQCVD-YLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHN-DIHLA 221 (342)
Q Consensus 146 ~~~~~FG~~L~~l~~~~--~~~~iP~vl~~~i~-~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~-d~~~v 221 (342)
....+||++++.+-... .+..+|.++.-+.+ .+....|++.|||||+.|...+++.+|+.+|.|...+... |+|++
T Consensus 142 ~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iDvH~~ 221 (577)
T KOG4270|consen 142 ASETVFGVSTEAMQLSYDPRGNFVPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQLYIDVHCL 221 (577)
T ss_pred chhhhhcchHHhhhcccccCCCcchhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccccCCHHHH
Confidence 45679999988765433 33447999998888 6665589999999999999999999999999998665535 99999
Q ss_pred HHHHHHHHHhCCCCCCChHhHHHHHccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhh
Q psy12161 222 AVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLA 301 (342)
Q Consensus 222 a~llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa 301 (342)
|++||.||||||+|++++++|++|+...+..++++..+.++.++..||+.|+..|.|+++||+.|+++++.||||++|||
T Consensus 222 agllKayLRELPepvl~~nL~~e~~qv~~~~~e~~~~q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~NlA 301 (577)
T KOG4270|consen 222 AGLLKAYLRELPEPVLTFNLYKEWTQVQNCENEDEKVQLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNLA 301 (577)
T ss_pred HHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhce
Confidence 99999999999999999999999998777777666666899999999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCCCCccchhhh----chHHHHHHHHHhcccccc
Q psy12161 302 VVFAPNLIWAPVNSQLSLSAI----SPINSFVYFMFNNYHSIF 340 (342)
Q Consensus 302 ~vfgP~L~~~~~~~~~~~~~~----~~~~~~v~~lI~~~~~iF 340 (342)
+||||+|+|+. +....+... .....+++..|++++..|
T Consensus 302 iV~gPNl~~~~-~p~~~l~~avqvs~~~~~lie~~l~~~~~~~ 343 (577)
T KOG4270|consen 302 IVFGPNLLWMK-DPLTALMYAVQVSNFLKGLIEKTLEERDTSF 343 (577)
T ss_pred eEecCCccccC-ChHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 99999999999 555444333 344555566666677665
No 45
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.97 E-value=8.7e-31 Score=220.72 Aligned_cols=143 Identities=43% Similarity=0.732 Sum_probs=130.3
Q ss_pred cHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCC--CCCC-CHHHHHHHHHHHHHhCCCCCCChHhHHH
Q psy12161 168 APILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPI--LFHN-DIHLAAVLLKTFLRELDEPLLTYDLYDE 244 (342)
Q Consensus 168 P~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~--~~~~-d~~~va~llK~fLr~Lp~pLi~~~~~~~ 244 (342)
|.++.+|++||++ +|+.++||||.+|+..+++++++.++.|... +++. |+|++|++||.||++||+||+|.+.|+.
T Consensus 1 P~~l~~~~~~l~~-~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~ 79 (151)
T PF00620_consen 1 PRILNDCVDYLEK-KGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDK 79 (151)
T ss_dssp EHHHHHHHHHHHH-HTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHH
T ss_pred ChHHHHHHHHHHH-hCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHH
Confidence 8899999999999 9999999999999999999999999999876 5555 9999999999999999999999999999
Q ss_pred HHccCCCChh-HHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhcccCCCC
Q psy12161 245 ILLFPTLNKD-ERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAP 312 (342)
Q Consensus 245 ~~~~~~~~~~-~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP~L~~~~ 312 (342)
+++..+..+. ++.. .++.++.+||+.|+.+|.+++.||++|+.+++.|+||++|||+||||+|++++
T Consensus 80 ~~~~~~~~~~~~~~~-~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~ 147 (151)
T PF00620_consen 80 FIAASKSADEEEQIE-AIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPP 147 (151)
T ss_dssp HHHHHTSSSHHHHHH-HHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGS
T ss_pred HhhhhccchhhHHHH-HHHHhhhccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCC
Confidence 9976555544 4445 89999999999999999999999999999999999999999999999999998
No 46
>KOG2710|consensus
Probab=99.96 E-value=1.3e-28 Score=232.27 Aligned_cols=178 Identities=32% Similarity=0.549 Sum_probs=157.4
Q ss_pred CCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcC-----CCCCCCC-CHHHHHHHHHHHHHhCCCCC
Q psy12161 163 GGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNG-----EPILFHN-DIHLAAVLLKTFLRELDEPL 236 (342)
Q Consensus 163 ~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g-----~~~~~~~-d~~~va~llK~fLr~Lp~pL 236 (342)
....||.++.+|+.|+.+ +|+++.||||+.|+...+++|++.++++ +..+|++ ++|++|++||+|||+||+||
T Consensus 90 ~~~~IP~vv~~c~~~lk~-~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~flr~lp~pL 168 (412)
T KOG2710|consen 90 GEGQIPRVVAKCGQYLKK-NGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFLRDLPDPL 168 (412)
T ss_pred cceeCcHHHHHHHHHHHH-cCceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHHhCCccc
Confidence 336799999999999999 9999999999999999999999999997 4556666 99999999999999999999
Q ss_pred CChHhHHHHHccCCCChh-HHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCC-----------CCChhhhhHhh
Q psy12161 237 LTYDLYDEILLFPTLNKD-ERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLN-----------KMTWNNLAVVF 304 (342)
Q Consensus 237 i~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~N-----------kMt~~nLa~vf 304 (342)
+|.++|+.|+....++.+ +++. .++.++..||+.|+++|.+++.||+.++.+++.| +|++.|||++|
T Consensus 169 LP~~LY~~f~~p~kl~~e~e~~~-~l~l~~~llp~~nr~~l~~ll~fL~~~a~~s~d~~~kdg~~~~gnkm~~~nlatIf 247 (412)
T KOG2710|consen 169 LPLELYESFINPAKLEPETEQLG-VLQLLIYLLPKCNRDTLEVLLGFLSVVASHAEDNIGKDGQEVNGNKMTSENLATIF 247 (412)
T ss_pred CCHHHHHHHhhhhcCCcHHHHHH-HHHHHHHhcCccchhHHHHHHhhhhhhhcccccccccccccccCcccchhhhhhhh
Confidence 999999999998888877 5666 8999999999999999999999999999999998 99999999999
Q ss_pred hcccCCCCC--CCccch------hhhchHHHHHHHHHhcccccccC
Q psy12161 305 APNLIWAPV--NSQLSL------SAISPINSFVYFMFNNYHSIFII 342 (342)
Q Consensus 305 gP~L~~~~~--~~~~~~------~~~~~~~~~v~~lI~~~~~iF~~ 342 (342)
+|+++.... ....+. .....+..|+..|++|++.+|.|
T Consensus 248 ~P~iL~k~~~~~~~~s~~~~~~~s~~~~i~~~~~~~~~N~e~~f~i 293 (412)
T KOG2710|consen 248 GPNILYKLKGSHKELSVTGVANESESEAIVNFAQMMIENLEALFQI 293 (412)
T ss_pred cchhhhcccCCCcccccccccchhhHHHHHHHHHHhhhhHHHhhcC
Confidence 999999421 222222 23346788999999999999974
No 47
>KOG1451|consensus
Probab=99.95 E-value=7.6e-28 Score=229.57 Aligned_cols=171 Identities=27% Similarity=0.428 Sum_probs=154.9
Q ss_pred HHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCC-----CCCC-CC-CHHHHHHHHHHHHHhCCCCCCChHh
Q psy12161 169 PILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGE-----PILF-HN-DIHLAAVLLKTFLRELDEPLLTYDL 241 (342)
Q Consensus 169 ~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~-----~~~~-~~-d~~~va~llK~fLr~Lp~pLi~~~~ 241 (342)
.++++|++.++. .|++++|+||..|....++.+....-... +.+. ++ |+-++.+.||.|||.||+||+++++
T Consensus 390 ~fvrkCI~i~Et-~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPLMTY~L 468 (812)
T KOG1451|consen 390 EFVRKCIDILET-SGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPLMTYEL 468 (812)
T ss_pred HHHHHHHHHHHh-cCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchhhHHHH
Confidence 479999999999 99999999999999999999888764421 2222 33 8999999999999999999999999
Q ss_pred HHHHHccCCCChhH-HHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhcccCCCCCCCccchh
Q psy12161 242 YDEILLFPTLNKDE-RSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLS 320 (342)
Q Consensus 242 ~~~~~~~~~~~~~~-~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP~L~~~~~~~~~~~~ 320 (342)
...|+.+++.++.+ ++. +++.++.+||..||+.|..|++||..|++|+.+|.||..||++||||+|+|+..+..+.+.
T Consensus 469 Hk~FI~AAKsdnq~yRv~-aIHsLVHkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQEETVAAiM 547 (812)
T KOG1451|consen 469 HKVFINAAKSDNQTYRVD-AIHSLVHKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQEETVAAIM 547 (812)
T ss_pred HHHHHHHHhccchhhhHH-HHHHHHHhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCchHHHHHHHH
Confidence 99999988887765 555 8999999999999999999999999999999999999999999999999999977778999
Q ss_pred hhchHHHHHHHHHhccccccc
Q psy12161 321 AISPINSFVYFMFNNYHSIFI 341 (342)
Q Consensus 321 ~~~~~~~~v~~lI~~~~~iF~ 341 (342)
++.-+|-+|+.||+||++||-
T Consensus 548 dIKFQNIVVEILIEnyeKIF~ 568 (812)
T KOG1451|consen 548 DIKFQNIVVEILIENYEKIFK 568 (812)
T ss_pred cchhhhhhHHHHHhhhHHHhc
Confidence 999999999999999999993
No 48
>KOG1117|consensus
Probab=99.94 E-value=2e-26 Score=227.49 Aligned_cols=171 Identities=25% Similarity=0.427 Sum_probs=154.1
Q ss_pred CCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCC-CCCCCC---CHHHHHHHHHHHHHhCCCCCCC
Q psy12161 163 GGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGE-PILFHN---DIHLAAVLLKTFLRELDEPLLT 238 (342)
Q Consensus 163 ~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~-~~~~~~---d~~~va~llK~fLr~Lp~pLi~ 238 (342)
.++.||.++..|+.|+.+ +|+..|||||+.|...++.+|.+.+-++. .+.+.+ .+.+|+.+||+|||+|++||+|
T Consensus 723 s~~dIPvIVd~CI~FVTq-yGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~FlrdlddpLft 801 (1186)
T KOG1117|consen 723 SKNDIPVIVDSCIAFVTQ-YGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDPLFT 801 (1186)
T ss_pred cCCCCcEehHHHHHHHHH-hCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCccccc
Confidence 567899999999999999 99999999999999999999999997744 455544 7999999999999999999999
Q ss_pred hHhHHHHHccCCCChhH-HHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhcccCCCCCCCcc
Q psy12161 239 YDLYDEILLFPTLNKDE-RSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQL 317 (342)
Q Consensus 239 ~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP~L~~~~~~~~~ 317 (342)
.++|..|+.+++.++++ ++. ....++..||..||.||+.|+.||++|..+++.|+|+.+|||.+|||+||...-.+
T Consensus 802 ~~~~~~w~eaae~~d~~Er~~-rY~~lI~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTdgqd-- 878 (1186)
T KOG1117|consen 802 KELYPYWIEAAETQDDKERIK-RYGALIRSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTDGQD-- 878 (1186)
T ss_pred hhhhhhHHHhhhccchHHHHH-HHHHHHhhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecCCCc--
Confidence 99999999987776654 555 79999999999999999999999999999999999999999999999999988222
Q ss_pred chhhhchHHHHHHHHHhcccccccC
Q psy12161 318 SLSAISPINSFVYFMFNNYHSIFII 342 (342)
Q Consensus 318 ~~~~~~~~~~~v~~lI~~~~~iF~~ 342 (342)
....++++.||++|..+|+|
T Consensus 879 -----ehevnVledLingYvvVF~v 898 (1186)
T KOG1117|consen 879 -----EHEVNVLEDLINGYVVVFEV 898 (1186)
T ss_pred -----hhhhhHHHHHhcCceEEEEe
Confidence 25578899999999999986
No 49
>KOG1453|consensus
Probab=99.93 E-value=5e-26 Score=238.60 Aligned_cols=187 Identities=33% Similarity=0.574 Sum_probs=169.5
Q ss_pred ccCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCC-CCCCCC-CHHHHHHHHHH
Q psy12161 150 QFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGE-PILFHN-DIHLAAVLLKT 227 (342)
Q Consensus 150 ~FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~-~~~~~~-d~~~va~llK~ 227 (342)
.||.+|.+++.. .+..||.++.+|+.+++. +|+.+|||||++|...+++.+...++.|. .+++.+ |+|++++++|.
T Consensus 602 ~fG~~l~~~~~~-e~~~vP~i~~~c~~~ie~-~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVlK~ 679 (918)
T KOG1453|consen 602 LFGVSLSELARY-EPSTVPFILKKCLREIEA-HLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVLKL 679 (918)
T ss_pred cccHHHHHhhcc-CCCCCCHHHHHHHHHHHH-hhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHHHH
Confidence 999999999886 567899999999999999 99999999999999999999999999987 455556 99999999999
Q ss_pred HHHhCCCCCCChHhHHHHHccCCC-ChhH------HHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhh
Q psy12161 228 FLRELDEPLLTYDLYDEILLFPTL-NKDE------RSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNL 300 (342)
Q Consensus 228 fLr~Lp~pLi~~~~~~~~~~~~~~-~~~~------~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nL 300 (342)
|||+||+||++++.|+.|+...+. ..++ .+. .+..++..||+.|+++|.+|+.||.+|+.+++.|+|+..||
T Consensus 680 yLr~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nl 758 (918)
T KOG1453|consen 680 YLRKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLR-KLKEVLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNL 758 (918)
T ss_pred HHHhccccccccchHHHHHhhhccccccccccccccch-hHHHHHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCc
Confidence 999999999999999999998776 3333 455 79999999999999999999999999999999999999999
Q ss_pred hHhhhcccCCCCCCCccchhhhchHHHHHHHHHhcccccc
Q psy12161 301 AVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIF 340 (342)
Q Consensus 301 a~vfgP~L~~~~~~~~~~~~~~~~~~~~v~~lI~~~~~iF 340 (342)
|++|||||+|++ +...++.++...+..+.+++.+|..+|
T Consensus 759 aivF~Ptllr~~-d~~~~~~~~~~~~y~~~~~l~~~~~~~ 797 (918)
T KOG1453|consen 759 AIVFAPTLLRPP-DGTRDLTDMKDKNYPLAAQLPEYKITL 797 (918)
T ss_pred cccccCcccCCC-CCcchhhhhccchhhHHHhcchHHHHH
Confidence 999999999999 888888887777777888888887665
No 50
>KOG3564|consensus
Probab=99.92 E-value=8.9e-24 Score=197.90 Aligned_cols=178 Identities=23% Similarity=0.386 Sum_probs=152.0
Q ss_pred hhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHHHHHhC
Q psy12161 155 LQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHN--DIHLAAVLLKTFLREL 232 (342)
Q Consensus 155 L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~--d~~~va~llK~fLr~L 232 (342)
|.+.+.. -...||.++..|+..|++ .|+..|||||++|...++++|++.+-+|....-.. |+|++|+++|.|||.|
T Consensus 351 L~DF~~s-~aPMIPalVVHCVneIEa-RGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~L 428 (604)
T KOG3564|consen 351 LADFAPS-TAPMIPALVVHCVNEIEA-RGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNL 428 (604)
T ss_pred hhhhccc-ccccchHHHHHHHHHHHH-ccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhc
Confidence 3443333 346799999999999999 99999999999999999999999999998543322 9999999999999999
Q ss_pred CCCCCChHhHHHHHccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhcccCCCC
Q psy12161 233 DEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAP 312 (342)
Q Consensus 233 p~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP~L~~~~ 312 (342)
.+||||.....+|+.+...+|++....++-..+..||..||.+|.|||-|+++|++ |+.|+|+..|||.+|||+++..+
T Consensus 429 kePLip~~~~rdf~eAa~~tD~dn~~~aly~aV~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~ 507 (604)
T KOG3564|consen 429 KEPLIPFRLRRDFMEAAEITDEDNSILALYQAVGELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHA 507 (604)
T ss_pred ccccccchHHHHHHHHhcCCCchhHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccC
Confidence 99999999999999988887766555578889999999999999999999999777 78899999999999999999855
Q ss_pred CCCc---cchhhhchHHHHHHHHHhc
Q psy12161 313 VNSQ---LSLSAISPINSFVYFMFNN 335 (342)
Q Consensus 313 ~~~~---~~~~~~~~~~~~v~~lI~~ 335 (342)
..++ ...+++..+.++++-|++-
T Consensus 508 vp~pd~~~~l~dv~~q~rvmkaLlel 533 (604)
T KOG3564|consen 508 VPNPDQVTMLQDVKTQPRVMKALLEL 533 (604)
T ss_pred CCCccHhHHHHhhhhhHHHHHHHHhC
Confidence 4332 4566777777777777653
No 51
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.90 E-value=1.7e-24 Score=182.15 Aligned_cols=116 Identities=36% Similarity=0.680 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHh-hhhccCCeEEEEEecCCCCCCCCCHHHHHHHHHHhhHHhhhccceEEEecCChhHHHHH-HHHHhH
Q psy12161 5 TKEATQTQYTYVL-DKFVEQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVL-QIFKAA 82 (342)
Q Consensus 5 ~~e~~~~y~~~~l-~~~~~~~y~~vy~~~~~~~~~~p~~~wl~~~y~~l~~~~~knlk~~yivhp~~~~k~~~-~~~~~~ 82 (342)
.+|+++.|++++| +.++.++|++||+|+|.+..+.|+|+|++++|+.+|+++++||+++|||||++|.|+.+ .+.+++
T Consensus 29 ~~~~ll~yl~~~l~~~~~~~~f~vVid~~~~~~~~~~~~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~ 108 (149)
T PF13716_consen 29 DLERLLLYLLSTLSEEVVDKPFSVVIDHTGFSRSSEPSLSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPF 108 (149)
T ss_dssp HHHHHHHHHHHHH-TTTTTS-EEEEEE-TT--GGG---HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTG
T ss_pred hHHHHHHHHHHhhhHHhcCCCEEEEEEcCCCccccCCchHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhccc
Confidence 6899999999999 88889999999999999999999999999999999999999999999999999999999 677788
Q ss_pred hhHhh-hcceeeccchHHHHhccccccc--CCChHHHHHHHH
Q psy12161 83 ISAKF-GRKMIYINYLHELKSHLNLDQL--CIPRQVIEHDER 121 (342)
Q Consensus 83 ~s~k~-~~Ki~~~~~L~~L~~~i~~~ql--~iP~~v~~~d~~ 121 (342)
.+.|+ ++|++|++++++|.++|+.+|+ .+| .+.+||.+
T Consensus 109 ~~~~~~~~kv~~~~sl~~L~~~i~~~qL~~~lp-~~~~~d~~ 149 (149)
T PF13716_consen 109 VSSKFWKKKVVYVSSLSELSKHIDPSQLPESLP-GVLQYDHE 149 (149)
T ss_dssp GGGTT--TTEEEESSTCGGGGTSGGGG-------HHH-----
T ss_pred ccccccceEEEEECCHHHHHhhCCHHHhcccCC-CEEecCcC
Confidence 89999 9999999999999999999999 999 79999863
No 52
>KOG1452|consensus
Probab=99.83 E-value=2.2e-20 Score=167.46 Aligned_cols=192 Identities=21% Similarity=0.204 Sum_probs=155.9
Q ss_pred CCCCCccCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcC-CCCCCCC----CHH
Q psy12161 145 YSPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNG-EPILFHN----DIH 219 (342)
Q Consensus 145 ~~~~~~FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g-~~~~~~~----d~~ 219 (342)
|.-..+||.+|+.++++ +...-|.++..|++.+++ +|++.-|+|+.+|+..+-+.|++.|+.+ ..+.+.. |.+
T Consensus 179 PrlrgvfG~~L~~lV~R-E~~~~PIvlrR~~~EiEk-RGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~n 256 (442)
T KOG1452|consen 179 PRLRGVFGISLSRLVQR-EPESPPIVLRRLYAEIEK-RGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYN 256 (442)
T ss_pred cccccccchhhHhHhhc-CCCCCchHHHHHHHHHHh-cccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcc
Confidence 33446999999999999 567789999999999999 9999999999999999999999999883 3444432 999
Q ss_pred HHHHHHHHHHHhCCCCCCChHhHHHHHccCC--CChhH-HHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy12161 220 LAAVLLKTFLRELDEPLLTYDLYDEILLFPT--LNKDE-RSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMT 296 (342)
Q Consensus 220 ~va~llK~fLr~Lp~pLi~~~~~~~~~~~~~--~~~~~-~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt 296 (342)
.+++++|.|+||||||+++...++...++.. ++++. --.+.+-.++..|+.+++.+|..++.||..|..+|+.|+||
T Consensus 257 vItg~~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt 336 (442)
T KOG1452|consen 257 VITGDSKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLAIIDCLERELSKQLNVCLDHLSTVLCSSPHNGLT 336 (442)
T ss_pred eeecccHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHHHHHHHHHHhhhhHhHHHhhhhHheecCCcCCcC
Confidence 9999999999999999999998887776422 23322 22235778899999999999999999999999999999999
Q ss_pred hhhhhHhhhcccCCCCC-CCccchhhhchHHHHHHHHHhcccc
Q psy12161 297 WNNLAVVFAPNLIWAPV-NSQLSLSAISPINSFVYFMFNNYHS 338 (342)
Q Consensus 297 ~~nLa~vfgP~L~~~~~-~~~~~~~~~~~~~~~v~~lI~~~~~ 338 (342)
+..||.+|||-||-... -++....+..+...+.+..|+.|.+
T Consensus 337 ~~~Ls~i~~P~L~~~~~t~sP~t~~~~sk~~AV~~~~i~~~~s 379 (442)
T KOG1452|consen 337 PTRLSLIFAPLLFFCLDTFSPYTISPTSKMAAVRTLDINQASS 379 (442)
T ss_pred HHHHHHHhhhhHHHhhcccCCCccCCcchhHHHHHhhhhccCc
Confidence 99999999999987662 1233444455556666777766643
No 53
>KOG4724|consensus
Probab=99.78 E-value=1.4e-19 Score=175.94 Aligned_cols=191 Identities=23% Similarity=0.185 Sum_probs=167.2
Q ss_pred CCCCCccCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCC-CHHHHHH
Q psy12161 145 YSPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHN-DIHLAAV 223 (342)
Q Consensus 145 ~~~~~~FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~-d~~~va~ 223 (342)
+.++..||.||..+|.+ ...|.-+.++.-++-. .|..++||||..++...++++++.+++|..+.++. .+++.|+
T Consensus 77 ~~~~~Lfg~pl~nic~~---~~lp~p~~d~l~~lc~-kgp~t~giFr~~anek~~relKe~lnsgv~v~l~~~~i~v~a~ 152 (741)
T KOG4724|consen 77 TADSFLFGWPLTNICVH---FRLPEPDEDFLLLLCC-KGPCTRGIFRTIANEKNVRELKETLNSGVDVGLKSGEIVVDAA 152 (741)
T ss_pred CCCccccCccchhhccc---CCCCChHHHHHHHHhh-cCcccHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeeh
Confidence 67789999999999987 3399999999999998 99999999999999999999999999999999887 9999999
Q ss_pred HHHHHHHhCCCCCCChHhHHHHHccCCCChhH-HHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhH
Q psy12161 224 LLKTFLRELDEPLLTYDLYDEILLFPTLNKDE-RSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAV 302 (342)
Q Consensus 224 llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~ 302 (342)
++|.|||..|.-++..++|+.|.......+++ ++. .++.+..+||..|..+|+++...+ -|..++..|.|+..|||+
T Consensus 153 v~kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~-~i~r~~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~ 230 (741)
T KOG4724|consen 153 VDKDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIIS-EIERQGDRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQ 230 (741)
T ss_pred hhhchhhhchhhhhccccHHHHhhccccccHHHHHH-HHHHHHhhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHH
Confidence 99999999999999999999999876655544 555 899999999999999999999999 889999999999999999
Q ss_pred hhhcccCCCCCCCccchh--hhchHHHHHHHHHhccccccc
Q psy12161 303 VFAPNLIWAPVNSQLSLS--AISPINSFVYFMFNNYHSIFI 341 (342)
Q Consensus 303 vfgP~L~~~~~~~~~~~~--~~~~~~~~v~~lI~~~~~iF~ 341 (342)
|+||+.++...+...... -.++.--.+.++|+|+=.||+
T Consensus 231 cv~p~~l~~~~~~s~e~~k~ln~kv~~l~~flI~nclrifG 271 (741)
T KOG4724|consen 231 CVNPIKLKVLTRTSSEFGKGLNGKVPPLPIFLIVNCLRIFG 271 (741)
T ss_pred HhcchhcccccccChhhhccccCCCCCceeeehhhhHHhhc
Confidence 999999999954332211 122334567899999988885
No 54
>KOG4271|consensus
Probab=99.75 E-value=6.7e-19 Score=176.21 Aligned_cols=160 Identities=25% Similarity=0.349 Sum_probs=146.0
Q ss_pred CCCccCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCC---CHHHHHH
Q psy12161 147 PTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHN---DIHLAAV 223 (342)
Q Consensus 147 ~~~~FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~---d~~~va~ 223 (342)
..+.||.++..+... ...||.++.+|++|+++ .|+.+||++|++|+.....+++..|......++.+ .++++|+
T Consensus 914 ~s~~~~~~l~~~~t~--~k~ip~~~ekc~sfied-tg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~vag 990 (1100)
T KOG4271|consen 914 ESNYFLTPLQDAVTS--EKPIPIFLEKCKSFIED-TGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVAG 990 (1100)
T ss_pred hhhccCCcccccccC--CcccchHHHHHHHHHHh-ccchhhhheecCCCCccHHHHHHHHHhhccccccccccccccccC
Confidence 456899999887664 57899999999999999 99999999999999999999999999866666655 7999999
Q ss_pred HHHHHHHhCCCCCCChHhHHHHHccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHh
Q psy12161 224 LLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVV 303 (342)
Q Consensus 224 llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~v 303 (342)
.+|.|+..||+|++|..+...+.++..+.|..+....++.....+|+.|+.+++|++.||.+|+....+|.||..||++|
T Consensus 991 Alksffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~ 1070 (1100)
T KOG4271|consen 991 ALKSFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSIC 1070 (1100)
T ss_pred cchhhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHhhhcCchHHHHHHHHHHHHhhhccccccccccccccccc
Confidence 99999999999999999999999888888776655588999999999999999999999999999999999999999999
Q ss_pred hhcccC
Q psy12161 304 FAPNLI 309 (342)
Q Consensus 304 fgP~L~ 309 (342)
|++.|.
T Consensus 1071 ~~~~~~ 1076 (1100)
T KOG4271|consen 1071 FPTLLM 1076 (1100)
T ss_pred ccchHH
Confidence 999887
No 55
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.71 E-value=5.6e-17 Score=142.03 Aligned_cols=182 Identities=18% Similarity=0.230 Sum_probs=140.3
Q ss_pred CccCCChhHhhhhCCCCCCcHHHHHHH--HHHhCCCCccc--ccceeccccHHHHHHHHHHHhcCCC---CCCCCC-H--
Q psy12161 149 QQFGASLQHIKDNNGGDVIAPILRQCV--DYLSQPDALET--EGLFRRSASVALVRQCQTACNNGEP---ILFHND-I-- 218 (342)
Q Consensus 149 ~~FG~~L~~l~~~~~~~~iP~vl~~~i--~~l~~~~gl~~--egIFR~~g~~~~v~~l~~~~~~g~~---~~~~~d-~-- 218 (342)
++||+|+-+-+.+ ++...|..+..-. +++.. +.++. .|+|++++-...+...+++++...+ ++.+.. +
T Consensus 20 ~l~glp~Ld~vl~-~~~~~p~~i~~~~~~~~~~~-~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~ 97 (235)
T cd04405 20 QLVGLPLLEELLD-PALVNPKHISYNMDPDVYTS-NYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQ 97 (235)
T ss_pred HHcCCccHHHHhc-ccCCCCcchhhccccccccc-ccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccc
Confidence 5889886554444 4566777665544 55555 55554 7999999999999999999987421 222222 2
Q ss_pred --------HHHHHHHHHHHHhCCCCCCChHhHHHHHccCC----CChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHH
Q psy12161 219 --------HLAAVLLKTFLRELDEPLLTYDLYDEILLFPT----LNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKI 286 (342)
Q Consensus 219 --------~~va~llK~fLr~Lp~pLi~~~~~~~~~~~~~----~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v 286 (342)
.++|.+++.|+++||+||+|..+|+.+..+.+ ...+..++ +++.++-.||++||+.|+.|+.||.++
T Consensus 98 ~~~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~ale-AlQl~~lLLP~enRe~Lq~LL~fl~~v 176 (235)
T cd04405 98 HDMLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALE-ALQLCLLLLPPASRRELRRLLRFMARA 176 (235)
T ss_pred cccccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 27999999999999999999999998877433 22344555 899999999999999999999999999
Q ss_pred hhcC-------CCCCCChhhhhHhhhcccCCCCCCCccchhhhchHHHHHHHHHhcccccccC
Q psy12161 287 EDRS-------DLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIFII 342 (342)
Q Consensus 287 ~~~s-------~~NkMt~~nLa~vfgP~L~~~~~~~~~~~~~~~~~~~~v~~lI~~~~~iF~~ 342 (342)
+.++ ..|+| +++..|+|++++++ +-. . +....++.|||+|+.+||.|
T Consensus 177 a~~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~-~l~----~-~~~~~LV~Fmmd~~~~ifkv 230 (235)
T cd04405 177 AKNDMPRLHKEIENRM---LVKQTFSRAILCSK-DLD----E-GLADLLVLFLMDHHQDIFKV 230 (235)
T ss_pred HhcCccccccccchHH---HHHHHhhhHhcCcc-ccC----H-HHHHHHHHHHHHcchhhhcC
Confidence 9994 24666 89999999999999 222 2 33568899999999999976
No 56
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.66 E-value=7.5e-16 Score=133.69 Aligned_cols=144 Identities=19% Similarity=0.221 Sum_probs=120.2
Q ss_pred CcHHHHHHHHHHhCCCCcccccc---eeccccHHHHHHH-HHHHhcCC-CCCC--------CC-CHHHHHHHHHHHHHhC
Q psy12161 167 IAPILRQCVDYLSQPDALETEGL---FRRSASVALVRQC-QTACNNGE-PILF--------HN-DIHLAAVLLKTFLREL 232 (342)
Q Consensus 167 iP~vl~~~i~~l~~~~gl~~egI---FR~~g~~~~v~~l-~~~~~~g~-~~~~--------~~-d~~~va~llK~fLr~L 232 (342)
+-.++..|.+.|+. .|+++++| ||-+++...++.+ +..++.|. .... .. |+++++++||.+++.|
T Consensus 6 v~~l~~~~t~eLk~-rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rL 84 (198)
T cd04401 6 VKGLIHNITEELKS-RGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRL 84 (198)
T ss_pred HHHHHHHHHHHHHh-cccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHC
Confidence 34578889999999 99999999 9999999999888 55556542 1111 11 9999999999999999
Q ss_pred CCCCCCh-HhHHHHHccCCCChhHHHHHHHHHHHhhC--CccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhcccC
Q psy12161 233 DEPLLTY-DLYDEILLFPTLNKDERSRYVKILILEKL--PTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLI 309 (342)
Q Consensus 233 p~pLi~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~L--p~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP~L~ 309 (342)
|.++++. +.|..|....+..+ .-.. .++.++..+ |+.|..++..++.+|..|+.|+..|+|+..+|+.+|||.+|
T Consensus 85 P~~~v~~~~~Y~~F~~~E~~~~-~p~~-aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF 162 (198)
T cd04401 85 PGSKVIWWEVYEEFKARERRSN-YPAD-AFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAF 162 (198)
T ss_pred CCCccCCHHHHHHHHHHHHhcC-CcHH-HHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHc
Confidence 9999999 99999998422221 2222 688888887 88899999999999999999999999999999999999999
Q ss_pred CCCC
Q psy12161 310 WAPV 313 (342)
Q Consensus 310 ~~~~ 313 (342)
..+.
T Consensus 163 ~~~~ 166 (198)
T cd04401 163 GKPT 166 (198)
T ss_pred CCCC
Confidence 9983
No 57
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.29 E-value=1.7e-11 Score=103.39 Aligned_cols=107 Identities=25% Similarity=0.469 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHhhhhcc--------CCeEEEEEecCCCCCCCCCHHHHHHHHHHhhHHhhhccceEEEecCChhHHHH
Q psy12161 4 STKEATQTQYTYVLDKFVE--------QDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVV 75 (342)
Q Consensus 4 ~~~e~~~~y~~~~l~~~~~--------~~y~~vy~~~~~~~~~~p~~~wl~~~y~~l~~~~~knlk~~yivhp~~~~k~~ 75 (342)
...+++++|++..+|.... ..+++|+.-+|.+..+ ++++|++++++.++..|..+++++|||||+++.+++
T Consensus 35 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~~~-~~~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~ 113 (158)
T smart00516 35 VTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSMSN-PDLSVLRKILKILQDHYPERLGKVLIINPPWFFRVL 113 (158)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCccc-ccHHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHH
Confidence 4567888888888876654 2578888888876644 889999999999999999999999999999999999
Q ss_pred HHHHHhHhhHhhhcceeeccc--hHHHHhcccccccCCCh
Q psy12161 76 LQIFKAAISAKFGRKMIYINY--LHELKSHLNLDQLCIPR 113 (342)
Q Consensus 76 ~~~~~~~~s~k~~~Ki~~~~~--L~~L~~~i~~~ql~iP~ 113 (342)
+.++++|+++++.+||+++++ .++|.++++.++ +|.
T Consensus 114 ~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~--lP~ 151 (158)
T smart00516 114 WKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQ--LPE 151 (158)
T ss_pred HHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhh--CcH
Confidence 999999999999999999998 899999996554 665
No 58
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.19 E-value=1.1e-10 Score=97.39 Aligned_cols=103 Identities=25% Similarity=0.463 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhhhhcc------CCeEEEEEecCCCCCCC-CCHHHHHHHHHHhhHHhhhccceEEEecCChhHHHHHHHH
Q psy12161 7 EATQTQYTYVLDKFVE------QDYSLVYFHYGLTSKNK-PSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIF 79 (342)
Q Consensus 7 e~~~~y~~~~l~~~~~------~~y~~vy~~~~~~~~~~-p~~~wl~~~y~~l~~~~~knlk~~yivhp~~~~k~~~~~~ 79 (342)
++++.|+...+|.... +.+++|+..+|.+..+. +...|++++++.++..|.++++++|+|||+++.++++.++
T Consensus 40 ~~~~~~~~~~~e~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~ 119 (157)
T cd00170 40 EELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLLPDPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIV 119 (157)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccceEEEEECCCCChhccchhHHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHH
Confidence 7778888887776554 35788888888875554 3788999999999999999999999999999999999999
Q ss_pred HhHhhHhhhcceeeccc-hHHHHhccccccc
Q psy12161 80 KAAISAKFGRKMIYINY-LHELKSHLNLDQL 109 (342)
Q Consensus 80 ~~~~s~k~~~Ki~~~~~-L~~L~~~i~~~ql 109 (342)
++|+++++.+|++++++ +++|.++++.+++
T Consensus 120 ~~~l~~~~~~ki~~~~~~~~~L~~~i~~~~L 150 (157)
T cd00170 120 KPFLSEKTRKKIVFLGSDKEELLKYIDKEQL 150 (157)
T ss_pred HHhcCHhhhhhEEEecCCHHHHHhhCChhhC
Confidence 99999999999999999 9999999987764
No 59
>KOG3565|consensus
Probab=99.17 E-value=3.5e-11 Score=121.41 Aligned_cols=148 Identities=26% Similarity=0.322 Sum_probs=129.7
Q ss_pred CCCCCcHHHHHHHHHHhCCCCccccccee-ccccHHHHHHHHHHHhcCCCCCCC--C-CHHHHHHHHHHHHHhCCCC-CC
Q psy12161 163 GGDVIAPILRQCVDYLSQPDALETEGLFR-RSASVALVRQCQTACNNGEPILFH--N-DIHLAAVLLKTFLRELDEP-LL 237 (342)
Q Consensus 163 ~~~~iP~vl~~~i~~l~~~~gl~~egIFR-~~g~~~~v~~l~~~~~~g~~~~~~--~-d~~~va~llK~fLr~Lp~p-Li 237 (342)
.+..+|.++..|+.+.+. +|+..+|||| .++....+...+.++.+|..+... + +... |+++|.|++.+.+| .+
T Consensus 214 ~~q~iP~i~d~~~~l~~~-~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f 291 (640)
T KOG3565|consen 214 YFQFIPLIVDSLQRLEER-RGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADF 291 (640)
T ss_pred CcccccHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccC
Confidence 557899999999999998 9999999999 899999999999999998644333 2 5666 99999999999999 99
Q ss_pred ChHhHHHHHccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhcccCCCC
Q psy12161 238 TYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAP 312 (342)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP~L~~~~ 312 (342)
+++.+..+..+....+.......++.++..+|..+..++.++..|+...+..++.|.|+..|+|+||||.+.-.+
T Consensus 292 ~~e~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~ 366 (640)
T KOG3565|consen 292 PFEDFGQPHDCAARDNLLSRALHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVP 366 (640)
T ss_pred ccccccchhhhhhhcCchhhhhhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCc
Confidence 999999998876555443332368889999999999999999999999999999999999999999999997655
No 60
>KOG4370|consensus
Probab=99.15 E-value=6.9e-11 Score=110.43 Aligned_cols=149 Identities=20% Similarity=0.247 Sum_probs=119.7
Q ss_pred CCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCC--------------------------------
Q psy12161 163 GGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGE-------------------------------- 210 (342)
Q Consensus 163 ~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~-------------------------------- 210 (342)
++...|..+....++.+. +|.-+||+.|.++.....+++++.-+.|+
T Consensus 67 d~~~~~~~f~~~~~~~e~-~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k~~~~~i~Epvvpi~~p~ 145 (514)
T KOG4370|consen 67 DGIPLPSFFRYAIDFVEE-NGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIKRFLRQIPEPVVPIEFPS 145 (514)
T ss_pred CCCcCcccchhhhhhhhc-cccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHHHhhhccCCccccccchH
Confidence 456678889999999999 99999999999887755555544322211
Q ss_pred ---------CCCCCC-CHHHHHHHHHHHHHhCCCCCCChHhHHHHHccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHH
Q psy12161 211 ---------PILFHN-DIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIV 280 (342)
Q Consensus 211 ---------~~~~~~-d~~~va~llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~ 280 (342)
.....+ +|.+||+++|.|+|+||+++++.++-..|..+...+......+.++.++..||++||.++.++.
T Consensus 146 V~r~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~llk~Lp~cNyll~swl~ 225 (514)
T KOG4370|consen 146 VARSCIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFLLKILPKCNYLLYSWLN 225 (514)
T ss_pred HHHHHhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccchHHHHHHH
Confidence 111122 7889999999999999999999999999988655544443333799999999999999999999
Q ss_pred HHHHHHhhcCCCCCCChhhhhHhhhcccCCCC
Q psy12161 281 TFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAP 312 (342)
Q Consensus 281 ~~l~~v~~~s~~NkMt~~nLa~vfgP~L~~~~ 312 (342)
-|+..|.+..-.|||+..||+++.+|++--+.
T Consensus 226 lH~d~vi~~e~~~Kln~q~i~i~lspt~q~s~ 257 (514)
T KOG4370|consen 226 LHKDKVIEEEYCLKLNKQQIFINLSPTEQESK 257 (514)
T ss_pred HHHHHHHHHHHHhhcchhheeeecchHHHHHH
Confidence 99999999999999999999999999865444
No 61
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=98.59 E-value=4.1e-07 Score=87.88 Aligned_cols=145 Identities=18% Similarity=0.191 Sum_probs=112.9
Q ss_pred CCcHHHHHHHHHHhCCCCcccccce---eccccHHHHHHHHHHH-hcCCCC---CC----C---C-CHHHHHHHHHHHHH
Q psy12161 166 VIAPILRQCVDYLSQPDALETEGLF---RRSASVALVRQCQTAC-NNGEPI---LF----H---N-DIHLAAVLLKTFLR 230 (342)
Q Consensus 166 ~iP~vl~~~i~~l~~~~gl~~egIF---R~~g~~~~v~~l~~~~-~~g~~~---~~----~---~-d~~~va~llK~fLr 230 (342)
.+-.+++.|.+.|.. +|+++++|| |-.-+...++.+...+ ..|... +. + . ++|+++++||-.+.
T Consensus 7 ev~~li~~~t~elK~-rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~ 85 (420)
T PF08101_consen 7 EVKDLIHACTEELKS-RGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWS 85 (420)
T ss_pred HHHHHHHHHHHHHHh-ccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 355678889999999 999999997 6666777777766654 443322 11 1 1 99999999999999
Q ss_pred hCCCCCCChHhHHHHHccCCCChhHHHHHHHHHHH-hhCC-ccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhccc
Q psy12161 231 ELDEPLLTYDLYDEILLFPTLNKDERSRYVKILIL-EKLP-TDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNL 308 (342)
Q Consensus 231 ~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~Lp-~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP~L 308 (342)
.||.++++++.|..|....+..+-.+ . +...++ ..+| +.+..++..++.+|..|+.|+..|+|+...||..+|+-.
T Consensus 86 RLp~gvVgW~~Y~~Fk~~E~~~~yp~-~-AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~Wa 163 (420)
T PF08101_consen 86 RLPGGVVGWDSYEEFKRREREAGYPR-D-AFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWA 163 (420)
T ss_pred HcCCCccccHHHHHHHHHHhhcCCCh-H-HHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHH
Confidence 99999999999999987533222222 2 455555 4564 555689999999999999999999999999999999999
Q ss_pred CCCCC
Q psy12161 309 IWAPV 313 (342)
Q Consensus 309 ~~~~~ 313 (342)
|....
T Consensus 164 F~~~~ 168 (420)
T PF08101_consen 164 FGHPD 168 (420)
T ss_pred CCCCC
Confidence 98883
No 62
>KOG4724|consensus
Probab=98.27 E-value=6.2e-07 Score=88.64 Aligned_cols=164 Identities=18% Similarity=0.180 Sum_probs=128.6
Q ss_pred CCCCccCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHH-----HHHHHHhcCCCCCCCC-CHH
Q psy12161 146 SPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVR-----QCQTACNNGEPILFHN-DIH 219 (342)
Q Consensus 146 ~~~~~FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~-----~l~~~~~~g~~~~~~~-d~~ 219 (342)
.....||+||+..++.+ ...|.-+......+.. .+..++++||+.-..+-+. ...+.-+.|+.++... .+|
T Consensus 412 l~kv~fdaPlS~~c~d~--gk~prPlq~~~tll~k-knp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~sspv~ 488 (741)
T KOG4724|consen 412 LAKVPFDAPLSVFCADQ--GKTPRPLQIQSTLLKK-KNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPSSPVH 488 (741)
T ss_pred hhhCcCCCchhhccccc--CCCCCChhhhhHHHHh-cCCCCCccCCCccchhhhhhcccccchhhhccCCcccCCCCCch
Confidence 45678999999998874 4566666656667777 8899999999955444332 2233333488888877 999
Q ss_pred HHHHHHHHHHHhCCCCCCChHhHHHHHccCCCChhHHHHHHHHH--------HHhhCCccHHHHHHHHHHHHHHHhhcCC
Q psy12161 220 LAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKIL--------ILEKLPTDNYTVLKYIVTFLSKIEDRSD 291 (342)
Q Consensus 220 ~va~llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~--------ll~~Lp~~n~~~L~~l~~~l~~v~~~s~ 291 (342)
.+++++|.|+|++|.+++..+...+...+....+++...+.++. .....|..+..+.+...--...+.+++.
T Consensus 489 taasv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse 568 (741)
T KOG4724|consen 489 TAASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSE 568 (741)
T ss_pred HHHHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceecccccc
Confidence 99999999999999999999999999998776665544447777 7778888888777777666777789999
Q ss_pred CCCCChhhhhHhhhcccCCCC
Q psy12161 292 LNKMTWNNLAVVFAPNLIWAP 312 (342)
Q Consensus 292 ~NkMt~~nLa~vfgP~L~~~~ 312 (342)
.+.||..|++.|-.|+...-.
T Consensus 569 ~~s~dsSn~~~csrpn~~tvd 589 (741)
T KOG4724|consen 569 ETSNDSSNPGFCSRPNALTVD 589 (741)
T ss_pred cccccccccCCCCCccccchh
Confidence 999999999999999988666
No 63
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=97.93 E-value=1.3e-05 Score=67.23 Aligned_cols=86 Identities=21% Similarity=0.339 Sum_probs=65.8
Q ss_pred CCeEEEEEecCCCCCCCCC--HHHHHHHHHHhhHHhhhccceEEEecCChhHHHHHHHHHhHhhHhhhcceeeccch---
Q psy12161 23 QDYSLVYFHYGLTSKNKPS--LSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKAAISAKFGRKMIYINYL--- 97 (342)
Q Consensus 23 ~~y~~vy~~~~~~~~~~p~--~~wl~~~y~~l~~~~~knlk~~yivhp~~~~k~~~~~~~~~~s~k~~~Ki~~~~~L--- 97 (342)
..+++|+.-+|.+..+.+. .+-++.+.+.+...|=..++.+|+++++++.++++.+++||++++..+||+.+.+-
T Consensus 61 ~~~~~iiD~~g~~~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~ 140 (159)
T PF00650_consen 61 EGIVVIIDLSGFSLSNFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWK 140 (159)
T ss_dssp H-EEEEEE-TT--HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHC
T ss_pred eeEEEEEeCCCceEeccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccH
Confidence 4678888888886443322 66777888888899999999999999999999999999999999999999999553
Q ss_pred HHHHhcccccc
Q psy12161 98 HELKSHLNLDQ 108 (342)
Q Consensus 98 ~~L~~~i~~~q 108 (342)
++|.++++.++
T Consensus 141 ~~l~~~i~~~~ 151 (159)
T PF00650_consen 141 AKLKEYIDPEQ 151 (159)
T ss_dssp HHHCCCSTGGG
T ss_pred HHHHhhCCHhH
Confidence 57999996553
No 64
>KOG1470|consensus
Probab=97.44 E-value=0.00054 Score=63.82 Aligned_cols=102 Identities=15% Similarity=0.312 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhhh----hc--cCCeEEEEEecCCCCCCCCCHHHHHHHHHHhhHHhhhccceEEEecCChhHHHHHHHH
Q psy12161 6 KEATQTQYTYVLDK----FV--EQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIF 79 (342)
Q Consensus 6 ~e~~~~y~~~~l~~----~~--~~~y~~vy~~~~~~~~~~p~~~wl~~~y~~l~~~~~knlk~~yivhp~~~~k~~~~~~ 79 (342)
++.+.++++.+||. +. .+.+++++.-+|.+.. .++++..+-+...|-.-|=..|-..+++||-|+...+|.+.
T Consensus 127 ~~~~~r~~Vy~mE~Ai~~lp~~qe~~~~L~D~~~fs~s-N~d~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkii 205 (324)
T KOG1470|consen 127 QKELERLLVYTLENAILFLPPGQEQFVWLFDLTGFSMS-NPDIKFLKELLHILQDHYPERLGKALLVNAPWIFQPFWKII 205 (324)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcceEEEEEecccCccc-CCCcHHHHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHh
Confidence 34445555555552 22 2358888888898765 58899999999999999999999999999999999999999
Q ss_pred HhHhhHhhhcceeeccchHHHHhcccccc
Q psy12161 80 KAAISAKFGRKMIYINYLHELKSHLNLDQ 108 (342)
Q Consensus 80 ~~~~s~k~~~Ki~~~~~L~~L~~~i~~~q 108 (342)
+||+-++...||+++..-.++.++++.++
T Consensus 206 kpflDp~t~~Kv~F~~~~~~l~~~~d~~~ 234 (324)
T KOG1470|consen 206 KPFLDPKTASKVKFVEPKDDLSEYFDESQ 234 (324)
T ss_pred hhccChhhhceeEEecChhHHHhhCCccc
Confidence 99999999999999999999999998876
No 65
>KOG1471|consensus
Probab=97.22 E-value=0.0014 Score=61.85 Aligned_cols=88 Identities=13% Similarity=0.197 Sum_probs=75.8
Q ss_pred cCCeEEEEEecCCCCCCC--CCHHHHHHHHHHhhHHhhhccceEEEecCChhHHHHHHHHHhHhhHhhhccee--eccch
Q psy12161 22 EQDYSLVYFHYGLTSKNK--PSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKAAISAKFGRKMI--YINYL 97 (342)
Q Consensus 22 ~~~y~~vy~~~~~~~~~~--p~~~wl~~~y~~l~~~~~knlk~~yivhp~~~~k~~~~~~~~~~s~k~~~Ki~--~~~~L 97 (342)
.+-.+.|+.=.|++-.+. +..+-++++...+...|=..++++|||+..++..+++.+++||++++..+||+ .-++.
T Consensus 158 ~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~ 237 (317)
T KOG1471|consen 158 ISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDK 237 (317)
T ss_pred cceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCch
Confidence 345788888888865543 77888888888999999999999999999999999999999999999999999 56789
Q ss_pred HHHHhccccccc
Q psy12161 98 HELKSHLNLDQL 109 (342)
Q Consensus 98 ~~L~~~i~~~ql 109 (342)
++|.++|+.+.+
T Consensus 238 ~~L~k~i~~~~L 249 (317)
T KOG1471|consen 238 ESLLKYIPPEVL 249 (317)
T ss_pred hhhhhhCCHhhC
Confidence 999999976643
No 66
>KOG1453|consensus
Probab=96.04 E-value=0.0047 Score=66.25 Aligned_cols=162 Identities=20% Similarity=0.198 Sum_probs=120.6
Q ss_pred ccCCChhHhhh-hCCCCCCcHHHHH-HHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCC--CCCCCC------CHH
Q psy12161 150 QFGASLQHIKD-NNGGDVIAPILRQ-CVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGE--PILFHN------DIH 219 (342)
Q Consensus 150 ~FG~~L~~l~~-~~~~~~iP~vl~~-~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~--~~~~~~------d~~ 219 (342)
++|+++..+.. .......|.++.+ +...... .|....|+||.++....+...+..++... ..+... ++.
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~vs~~~~~e~~~-~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~ 540 (918)
T KOG1453|consen 462 ILGTDLTTLSVNKDLNSNRPLSVSRSLERESRS-PGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVN 540 (918)
T ss_pred ccccCccccccchhhhcccCcccccchhcccCC-CCcccccccccCCccccccchhhccCccccchhccCCCccccccch
Confidence 77777766622 2234567888887 5566666 89999999999999999999999988732 222211 566
Q ss_pred HHHHHHHHHHHhC--CCCCCChHhHHHHHcc----------------C-CCChhHHHH------HHHHHHHh----hCCc
Q psy12161 220 LAAVLLKTFLREL--DEPLLTYDLYDEILLF----------------P-TLNKDERSR------YVKILILE----KLPT 270 (342)
Q Consensus 220 ~va~llK~fLr~L--p~pLi~~~~~~~~~~~----------------~-~~~~~~~~~------~~~~~ll~----~Lp~ 270 (342)
..++.++.+++.+ |.+....+.|..+... . .....+++. ..+..+.. .+|.
T Consensus 541 ~~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~~~~~e~~~vP~ 620 (918)
T KOG1453|consen 541 LHSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSELARYEPSTVPF 620 (918)
T ss_pred hccCcchhhhhcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHHhhccCCCCCCH
Confidence 7777999999999 9998888888887731 1 111223331 36777777 8999
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC-CCCh-hhhhHhhhc----ccCCCC
Q psy12161 271 DNYTVLKYIVTFLSKIEDRSDLN-KMTW-NNLAVVFAP----NLIWAP 312 (342)
Q Consensus 271 ~n~~~L~~l~~~l~~v~~~s~~N-kMt~-~nLa~vfgP----~L~~~~ 312 (342)
....++.++..++.++......| .|+. +||+.+|++ +.+.+.
T Consensus 621 i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~ 668 (918)
T KOG1453|consen 621 ILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTP 668 (918)
T ss_pred HHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCC
Confidence 99999999999999998888887 7887 999999999 555555
No 67
>KOG4271|consensus
Probab=94.55 E-value=0.059 Score=56.22 Aligned_cols=163 Identities=18% Similarity=0.077 Sum_probs=109.5
Q ss_pred CCCCCccCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCccccc---ceeccc-cHHHHHHHHHHHh-cCC-CCCCCC--
Q psy12161 145 YSPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEG---LFRRSA-SVALVRQCQTACN-NGE-PILFHN-- 216 (342)
Q Consensus 145 ~~~~~~FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~eg---IFR~~g-~~~~v~~l~~~~~-~g~-~~~~~~-- 216 (342)
+.-++++|.+-.-..+. -..-|.+..+-+.+|.. +|+..|| |-|.++ +...++.=...++ .|. .+...+
T Consensus 351 ~llss~~~rps~g~le~--~d~sp~~~~knL~~l~~-~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~ 427 (1100)
T KOG4271|consen 351 PLLSSVLGRPSLGALEN--SDGSPNIDEKNLVILGK-DGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQ 427 (1100)
T ss_pred hhhhhhhcCcchhhhhh--hcCCcccchhhhhhhhh-cccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhc
Confidence 44556777754443333 35679999999999999 9999999 989988 5555554444443 344 233333
Q ss_pred CHH--HHHHHHH--HHHHhCCCCCCChHhHHHHHcc--CC-CChhHHHHHHHHHHHhh--CCccHHH----HHHHHHHHH
Q psy12161 217 DIH--LAAVLLK--TFLRELDEPLLTYDLYDEILLF--PT-LNKDERSRYVKILILEK--LPTDNYT----VLKYIVTFL 283 (342)
Q Consensus 217 d~~--~va~llK--~fLr~Lp~pLi~~~~~~~~~~~--~~-~~~~~~~~~~~~~ll~~--Lp~~n~~----~L~~l~~~l 283 (342)
+|| .|+..++ .-|+..+..+.|......+... .. .-.+.++......++.+ .|.+|+. ++..++..+
T Consensus 428 ~ph~s~v~e~Ie~~~~lr~~~~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m 507 (1100)
T KOG4271|consen 428 QPHLSYVGESIEKSHSLRQQGQQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCM 507 (1100)
T ss_pred CcchhHHHhhhhhhhhhhhcccccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHH
Confidence 777 5666776 6677777766665544433332 12 22334666555666666 7888776 666666777
Q ss_pred HHHhhcCCCCCCChh-hhhHhhhc-ccCC
Q psy12161 284 SKIEDRSDLNKMTWN-NLAVVFAP-NLIW 310 (342)
Q Consensus 284 ~~v~~~s~~NkMt~~-nLa~vfgP-~L~~ 310 (342)
.-+..++..|.|++. .-|.|.+| .|++
T Consensus 508 ~~g~~~s~~ni~n~~~~s~aCkS~~llL~ 536 (1100)
T KOG4271|consen 508 MCGDPFSADNILNPVLASAACKSPHLLLR 536 (1100)
T ss_pred hcCCchhhhhhcChhhHHHHhcChHHHHh
Confidence 778889999999999 99999999 4665
No 68
>KOG1449|consensus
Probab=93.82 E-value=0.015 Score=57.49 Aligned_cols=60 Identities=27% Similarity=0.370 Sum_probs=49.6
Q ss_pred HHHHHHhhcCCCCCCChhhhhHhhhcccCCCCCCCc----------cchhhhchHHHHHHHHHhccccccc
Q psy12161 281 TFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQ----------LSLSAISPINSFVYFMFNNYHSIFI 341 (342)
Q Consensus 281 ~~l~~v~~~s~~NkMt~~nLa~vfgP~L~~~~~~~~----------~~~~~~~~~~~~v~~lI~~~~~iF~ 341 (342)
.||..|+.++..+.|-+.|||++++|+|+|++. .. ..+.+.+.+.-++++...|-|.+|-
T Consensus 2 rHls~va~~~s~tnmhA~Nla~vwapnllrske-ies~lcs~~~GdaAf~avq~qsvV~EfilnhvDvlF~ 71 (670)
T KOG1449|consen 2 RHLSSVALGPSRTNMHAINLAEVWAPNLLRSKE-IESSLCSHLWGDAAFSAVQAQSVVSEFILNHVDVLFL 71 (670)
T ss_pred cchhhhhccchhhHHHHhhHHHhhhhhhHHHHH-HHHhhhccccccHHHHHHHhhhhhhhhcccccceecC
Confidence 688999999999999999999999999999873 22 2344556667778999999999984
No 69
>KOG1449|consensus
Probab=91.96 E-value=0.011 Score=58.56 Aligned_cols=166 Identities=17% Similarity=0.283 Sum_probs=105.8
Q ss_pred CCccCCChhHhhhhCCCCCCcH-HHHHHHHHHhC--CCC--cccccceeccccHHHHHHHHHHHhcCCCCCCCC-----C
Q psy12161 148 TQQFGASLQHIKDNNGGDVIAP-ILRQCVDYLSQ--PDA--LETEGLFRRSASVALVRQCQTACNNGEPILFHN-----D 217 (342)
Q Consensus 148 ~~~FG~~L~~l~~~~~~~~iP~-vl~~~i~~l~~--~~g--l~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~-----d 217 (342)
+..||.-|..+... .++.+|. .+..||....+ .++ .+-+|.|+.+. |+|..++.+. |
T Consensus 207 ~~~~gl~ltr~~~~-~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~~------------D~gae~d~~af~~p~d 273 (670)
T KOG1449|consen 207 NLNCGLVLTRMEVG-LGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAVE------------DEGAEVDGEAFRWPSD 273 (670)
T ss_pred Cccccceecceeec-cccccchhhhccchhccccchhccCCcccCcceeccc------------cccccccccccCCccc
Confidence 34566656555444 6788998 77777766655 122 23345555544 4544444332 8
Q ss_pred HHHHHHHHHHHHHhCCCCCCChHhHHHHHccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCCh
Q psy12161 218 IHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTW 297 (342)
Q Consensus 218 ~~~va~llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~ 297 (342)
+..+...++-|.+.+|.|+.. ..|+ +.+...+...+.+--...+++.|+.+-+.|..||...+.-.
T Consensus 274 i~v~S~d~dp~s~Q~~pp~~~-~~~~------k~Ds~s~sv~~~~~~~~~~se~~~r~a~~lse~ft~~~~~~------- 339 (670)
T KOG1449|consen 274 IVVESWDMDPYSRQLPPPYPK-EAFE------KEDSLSESVESLRFSLETMSEAHYRTAKFLSEHFTRLCKSK------- 339 (670)
T ss_pred eeeeccccChhhhhcCCCCcc-cccc------cccCcccceeeeccccccCCcccchHhhhhchhhhhhcccc-------
Confidence 888999999999999999443 2222 12222222225555667889999999999999998877633
Q ss_pred hhhhHhhhcccCCCCCCCc-c---chhhhchHHHHHHHHHhcccccc
Q psy12161 298 NNLAVVFAPNLIWAPVNSQ-L---SLSAISPINSFVYFMFNNYHSIF 340 (342)
Q Consensus 298 ~nLa~vfgP~L~~~~~~~~-~---~~~~~~~~~~~v~~lI~~~~~iF 340 (342)
.+++|++.|+++|++..-+ . .+...+....++.+.+++.+..|
T Consensus 340 ~s~~I~~~~~~~r~pptL~~~~~h~~~~~~~~~~~~~~~~e~s~~~~ 386 (670)
T KOG1449|consen 340 KSLAIVWSPNLFRPPPTLNGADTHLLSGLNVHTAICDFFIENSESLF 386 (670)
T ss_pred ccceeecCCCCCCCCCCCCchhhhhcccCCcceeecccchhhhhhhh
Confidence 7899999999999995222 1 11223344555666677666655
No 70
>PF10928 DUF2810: Protein of unknown function (DUF2810); InterPro: IPR021230 This is a bacterial family of uncharacterised proteins. This entry contains YibL (P0ADK8 from SWISSPROT), which comigrates with the mature 50S ribosome subunit. It either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2LF0_A.
Probab=66.01 E-value=3.3 Score=27.48 Aligned_cols=17 Identities=41% Similarity=0.677 Sum_probs=12.7
Q ss_pred HHhhhccceEEEecCCh
Q psy12161 54 RKYKKNLKALYLVHPTG 70 (342)
Q Consensus 54 ~~~~knlk~~yivhp~~ 70 (342)
-+.||..+.+.||||-.
T Consensus 20 GkLKKsVrGLvvVHPmT 36 (54)
T PF10928_consen 20 GKLKKSVRGLVVVHPMT 36 (54)
T ss_dssp HHHHHHTTS-EEE-SSS
T ss_pred HHHHhhhceeEEEechH
Confidence 46799999999999954
No 71
>PRK11020 hypothetical protein; Provisional
Probab=47.66 E-value=11 Score=29.74 Aligned_cols=16 Identities=44% Similarity=0.739 Sum_probs=14.0
Q ss_pred HhhhccceEEEecCCh
Q psy12161 55 KYKKNLKALYLVHPTG 70 (342)
Q Consensus 55 ~~~knlk~~yivhp~~ 70 (342)
+.||..+++.||||-.
T Consensus 84 kLKKSVrGLVVVHPMT 99 (118)
T PRK11020 84 KLKKSVRGLVVVHPMT 99 (118)
T ss_pred HHhhcccceeEecCch
Confidence 6799999999999943
No 72
>KOG4370|consensus
Probab=30.17 E-value=71 Score=31.26 Aligned_cols=31 Identities=35% Similarity=0.495 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHhCCCCCCChHhHHHHHc
Q psy12161 217 DIHLAAVLLKTFLRELDEPLLTYDLYDEILL 247 (342)
Q Consensus 217 d~~~va~llK~fLr~Lp~pLi~~~~~~~~~~ 247 (342)
|.+..++..|.|++..|+|++|.++-..+..
T Consensus 119 D~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~ 149 (514)
T KOG4370|consen 119 DAHDAAGLIKRFLRQIPEPVVPIEFPSVARS 149 (514)
T ss_pred HHHHHHhHHHHhhhccCCccccccchHHHHH
Confidence 9999999999999999999999775444443
No 73
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=29.53 E-value=3.8e+02 Score=24.72 Aligned_cols=114 Identities=14% Similarity=0.173 Sum_probs=59.1
Q ss_pred HHHHHHHHHhCCCCcccccceec----cccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhCCCCCCChHhHHHH
Q psy12161 170 ILRQCVDYLSQPDALETEGLFRR----SASVALVRQCQTACNNGEPILFHNDIHLAAVLLKTFLRELDEPLLTYDLYDEI 245 (342)
Q Consensus 170 vl~~~i~~l~~~~gl~~egIFR~----~g~~~~v~~l~~~~~~g~~~~~~~d~~~va~llK~fLr~Lp~pLi~~~~~~~~ 245 (342)
.+..+++.+.. +|...-.-... .+.....+.+.+.++...+ +. -..++-|+.|.+|...-.+ +.+....+
T Consensus 84 al~~l~Dll~~-~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~~--~~~a~EGl~KLlL~~~i~~--~~~vL~~L 157 (298)
T PF12719_consen 84 ALKALFDLLLT-HGIDIFDSESDNDESVDSKSLLKILTKFLDSENP-EL--QAIAVEGLCKLLLSGRISD--PPKVLSRL 157 (298)
T ss_pred HHHHHHHHHHH-cCchhccchhccCccchHhHHHHHHHHHHhcCCH-HH--HHHHHHHHHHHHhcCCCCc--HHHHHHHH
Confidence 35566677777 88654433333 3345555666666655411 00 4555667889998886544 24555555
Q ss_pred Hcc---CCCChhHHHHHHHHHHHh---hCCccHHH-HHHHHHHHHHHHhhc
Q psy12161 246 LLF---PTLNKDERSRYVKILILE---KLPTDNYT-VLKYIVTFLSKIEDR 289 (342)
Q Consensus 246 ~~~---~~~~~~~~~~~~~~~ll~---~Lp~~n~~-~L~~l~~~l~~v~~~ 289 (342)
+-. ....+..++.+.+.-.+. ...+.|+. +....+..++.+...
T Consensus 158 ll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 158 LLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 442 122233455544444433 34444443 334444566666554
No 74
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=25.35 E-value=1.2e+02 Score=28.96 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=29.0
Q ss_pred ccCCeEEEEEecCCCCCCCCCHHHHHHHHHHhhHHhhhccceEEEecCCh
Q psy12161 21 VEQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTG 70 (342)
Q Consensus 21 ~~~~y~~vy~~~~~~~~~~p~~~wl~~~y~~l~~~~~knlk~~yivhp~~ 70 (342)
..++|++|.+|......+.-...-+..+.+.+... +++.-++.+|++=
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~--~~~~vi~~~hn~p 225 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAER--QNVPVIFPLHNNP 225 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHH--TTEEEEEE--S-H
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhc--CCCcEEEEecCCc
Confidence 67799999999776443223355555666666555 7999999999543
No 75
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=21.01 E-value=80 Score=30.58 Aligned_cols=41 Identities=17% Similarity=0.380 Sum_probs=28.6
Q ss_pred CCeEEEEEecCCC--CCCCCCHHHHHHHHHHhhHHhhhccceEEEecCC
Q psy12161 23 QDYSLVYFHYGLT--SKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPT 69 (342)
Q Consensus 23 ~~y~~vy~~~~~~--~~~~p~~~wl~~~y~~l~~~~~knlk~~yivhp~ 69 (342)
.+-+|||+|+|.= ......+.++..+|+.||.. ++.++.-+
T Consensus 121 ~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~~~------SILvLDYs 163 (374)
T PF10340_consen 121 SDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLPEV------SILVLDYS 163 (374)
T ss_pred CCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcCCC------eEEEEecc
Confidence 4789999999862 11223478999999999822 77766643
No 76
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=20.94 E-value=1.6e+02 Score=22.69 Aligned_cols=45 Identities=18% Similarity=0.382 Sum_probs=33.7
Q ss_pred HHHHHHhhhhccCCeEEEEEecCCCCCCCCCHHHHHHHHHHhhHHhhhccceEEE
Q psy12161 11 TQYTYVLDKFVEQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYL 65 (342)
Q Consensus 11 ~y~~~~l~~~~~~~y~~vy~~~~~~~~~~p~~~wl~~~y~~l~~~~~knlk~~yi 65 (342)
.-+.+.++.+++.+|++|=.. ++.. -.+|..+-++|-.+++++||
T Consensus 53 ~~i~~i~~~fP~~kfiLIGDs----gq~D------peiY~~ia~~~P~~i~ai~I 97 (100)
T PF09949_consen 53 DNIERILRDFPERKFILIGDS----GQHD------PEIYAEIARRFPGRILAIYI 97 (100)
T ss_pred HHHHHHHHHCCCCcEEEEeeC----CCcC------HHHHHHHHHHCCCCEEEEEE
Confidence 344557788888999998443 3333 36789999999999999997
No 77
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=20.62 E-value=2.5e+02 Score=25.68 Aligned_cols=96 Identities=18% Similarity=0.235 Sum_probs=53.9
Q ss_pred CcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhCCCCCCChHhHHHHH
Q psy12161 167 IAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHNDIHLAAVLLKTFLRELDEPLLTYDLYDEIL 246 (342)
Q Consensus 167 iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~d~~~va~llK~fLr~Lp~pLi~~~~~~~~~ 246 (342)
.+.++..|.+-++- . .=..+|..-|+.. +-+.+++..| +..++|+.|.-+ .++.
T Consensus 156 ~l~Ivv~C~RKtE~-~--~W~~LF~~lg~P~--dLf~~cl~~~-------~l~tAa~yLlVl-~~~e------------- 209 (258)
T PF07064_consen 156 YLEIVVNCARKTEV-R--YWPYLFDYLGSPR--DLFEECLENG-------NLKTAASYLLVL-QNLE------------- 209 (258)
T ss_pred hHHHHHHHHHhhHH-H--HHHHHHHhcCCHH--HHHHHHHHcC-------cHHHHHHHHHHH-HhcC-------------
Confidence 44455555555543 1 1335666666433 2333444433 677777777655 2221
Q ss_pred ccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhh
Q psy12161 247 LFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIED 288 (342)
Q Consensus 247 ~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~ 288 (342)
......+++....+++.+...+...++.+-.-|++||+.+-.
T Consensus 210 ~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~ 251 (258)
T PF07064_consen 210 GSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDP 251 (258)
T ss_pred CcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 111111223333356666667788999999999999998754
Done!