Query psy12161
Match_columns 342
No_of_seqs 249 out of 1475
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 20:17:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12161.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12161hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ow3_A RHO-GTPase-activating p 100.0 2.5E-49 8.7E-54 357.6 15.7 232 103-341 1-235 (242)
2 1tx4_A P50-rhogap; complex (GT 100.0 1.8E-45 6.3E-50 322.9 15.9 193 145-340 3-198 (198)
3 3msx_B RHO GTPase-activating p 100.0 2.6E-44 8.8E-49 316.4 15.5 192 145-340 7-201 (201)
4 3byi_A RHO GTPase activating p 100.0 5.7E-44 2E-48 317.1 16.0 193 146-341 15-212 (214)
5 3fk2_A Glucocorticoid receptor 100.0 2E-43 7E-48 319.7 15.3 194 145-341 48-244 (246)
6 2ee4_A RHO GTPase activating p 100.0 1.5E-43 5E-48 313.4 14.1 193 145-341 7-203 (209)
7 2osa_A N-chimaerin; RHO-GAP, G 100.0 1.3E-43 4.5E-48 312.1 13.5 191 147-340 5-202 (202)
8 3iug_A RHO/CDC42/RAC GTPase-ac 100.0 1.8E-42 6E-47 310.6 14.4 193 145-341 16-220 (229)
9 1pbw_A Rhogap domain, phosphat 100.0 3.1E-42 1.1E-46 306.3 9.9 189 148-342 5-200 (216)
10 1f7c_A Rhogap protein; GTPase 100.0 2.3E-41 7.7E-46 303.6 11.8 192 148-341 16-217 (231)
11 3eap_A RHO GTPase-activating p 100.0 8.9E-41 3E-45 306.3 14.8 195 145-342 59-259 (271)
12 3kuq_A RHO GTPase-activating p 100.0 1.4E-40 4.8E-45 297.9 14.2 192 145-339 15-228 (228)
13 2ovj_A Mgcracgap, RAC GTPase-a 100.0 1E-39 3.5E-44 286.9 16.3 187 152-341 3-195 (201)
14 3cxl_A N-chimerin; SH2, RHO-GA 100.0 1.9E-38 6.6E-43 311.9 14.4 191 147-340 266-463 (463)
15 2xs6_A Phosphatidylinositol 3- 100.0 6.4E-39 2.2E-43 283.6 3.5 182 146-341 18-210 (214)
16 3qis_A Inositol polyphosphate 100.0 1.2E-34 4E-39 276.3 15.8 142 166-314 198-339 (366)
17 3pg7_A Neurofibromin; SEC lipi 99.9 4.8E-26 1.6E-30 206.3 9.6 119 5-123 39-158 (256)
18 3peg_A Neurofibromin; SEC14 do 99.8 9.8E-21 3.4E-25 173.8 6.0 110 5-114 58-168 (290)
19 1r5l_A Alpha-TTP, protein (alp 98.6 8.6E-08 2.9E-12 86.4 7.2 103 6-109 113-225 (262)
20 3hx3_A Retinaldehyde-binding p 98.5 1.3E-07 4.6E-12 87.8 7.2 105 5-109 171-284 (316)
21 1aua_A Phosphatidylinositol tr 98.5 2.4E-07 8.1E-12 85.2 7.3 107 5-113 136-259 (296)
22 1olm_A SEC14-like protein 2; l 98.4 4.5E-07 1.5E-11 87.0 8.3 105 5-109 116-237 (403)
23 3q8g_A CRAL-TRIO domain-contai 98.1 2.4E-06 8.1E-11 79.5 6.1 89 23-113 183-274 (320)
24 2lf0_A Uncharacterized protein 46.8 6.3 0.00022 30.1 1.0 16 55-70 89-104 (123)
25 2q3l_A Uncharacterized protein 34.1 1.5E+02 0.0052 22.4 8.9 93 3-103 32-124 (126)
No 1
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=100.00 E-value=2.5e-49 Score=357.62 Aligned_cols=232 Identities=44% Similarity=0.757 Sum_probs=179.6
Q ss_pred cccccccCCChHHHHHHHHHHhhhcCCCCCCCCCCCCCCcCCCCCCCccCCChhHhhhhCC-CCCCcHHHHHHHHHHhCC
Q psy12161 103 HLNLDQLCIPRQVIEHDERLTAKLSKGSVLPTPLTSSVTNLTYSPTQQFGASLQHIKDNNG-GDVIAPILRQCVDYLSQP 181 (342)
Q Consensus 103 ~i~~~ql~iP~~v~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~FG~~L~~l~~~~~-~~~iP~vl~~~i~~l~~~ 181 (342)
|++++|+.||..|++||..+...+ +..+.+.++.++++ +.+.++||++|++++.+.+ +..||.++.+|+++|++
T Consensus 1 ~~~~~ql~ip~~v~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~- 75 (242)
T 1ow3_A 1 HVKLEQLGIPRQVLKYDDFLKSTQ-KSPATAPKPMPPRP---PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQA- 75 (242)
T ss_dssp ------------------------------------------CCTTCCSSSCHHHHHHHSTTCCSSCHHHHHHHHHHHH-
T ss_pred CCChhhcCCCHHHHHHHHHHHhcc-cCCCCCCCCCCCCC---CCCCCccCCcHHHHHhhcCCCCCCCHHHHHHHHHHHH-
Confidence 578899999999999999887664 22222222223333 6778999999999998853 24899999999999999
Q ss_pred CCcccccceeccccHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHHHHHhCCCCCCChHhHHHHHccCCCChhHHHHH
Q psy12161 182 DALETEGLFRRSASVALVRQCQTACNNGEPILFHN--DIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRY 259 (342)
Q Consensus 182 ~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~--d~~~va~llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~ 259 (342)
+|+++|||||++|+...++++++.+|+|..+++++ |+|++|++||.|||+||+||+|.++|+.++++.+.++++++.
T Consensus 76 ~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~dv~~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~- 154 (242)
T 1ow3_A 76 HALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVP- 154 (242)
T ss_dssp HCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHHHHHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHH-
T ss_pred cCCCCCceeeeCCcHHHHHHHHHHHhcCCCCCcccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCHHHHHH-
Confidence 99999999999999999999999999999888865 999999999999999999999999999999987777777777
Q ss_pred HHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhcccCCCCCCCccchhhhchHHHHHHHHHhccccc
Q psy12161 260 VKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSI 339 (342)
Q Consensus 260 ~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP~L~~~~~~~~~~~~~~~~~~~~v~~lI~~~~~i 339 (342)
.++.++.+||+.|+.+|.+|+.||++|+++++.||||++|||+||||+|+|++ +....+.++...+.++++||+||+.|
T Consensus 155 ~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~-~~~~~~~~~~~~~~~v~~LI~~~~~i 233 (242)
T 1ow3_A 155 ATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAK-DAAITLKAINPINTFTKFLLDHQGEL 233 (242)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCS-SHHHHHHTHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCcCCCCHHHhHHhhcchhCCCC-CccccHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999998 55566777788899999999999999
Q ss_pred cc
Q psy12161 340 FI 341 (342)
Q Consensus 340 F~ 341 (342)
|.
T Consensus 234 F~ 235 (242)
T 1ow3_A 234 FP 235 (242)
T ss_dssp C-
T ss_pred cC
Confidence 95
No 2
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=100.00 E-value=1.8e-45 Score=322.94 Aligned_cols=193 Identities=47% Similarity=0.821 Sum_probs=179.0
Q ss_pred CCCCCccCCChhHhhhhCCC-CCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCC--CHHHH
Q psy12161 145 YSPTQQFGASLQHIKDNNGG-DVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHN--DIHLA 221 (342)
Q Consensus 145 ~~~~~~FG~~L~~l~~~~~~-~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~--d~~~v 221 (342)
+.+.++||++|++++.+.+. ..||.++.+|+++|++ +|+++|||||++|+..+++++++.+|+|..++++. |+|++
T Consensus 3 ~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~-~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~~ 81 (198)
T 1tx4_A 3 PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQA-HALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLP 81 (198)
T ss_dssp CCTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHH-HCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHH
T ss_pred CCCCCccCCcHHHHHhhCCCCCCCCHHHHHHHHHHHH-hCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCccccccchHH
Confidence 55678999999999988533 4899999999999999 99999999999999999999999999999888765 99999
Q ss_pred HHHHHHHHHhCCCCCCChHhHHHHHccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhh
Q psy12161 222 AVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLA 301 (342)
Q Consensus 222 a~llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa 301 (342)
|++||.|||+||+||+|.++|+.++++.+.++++++. .++.++.+||+.|+.+|++|+.||++|+++++.||||++|||
T Consensus 82 a~lLK~flreLpePLi~~~l~~~~~~~~~~~~~~~~~-~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa 160 (198)
T 1tx4_A 82 AVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVP-ATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLA 160 (198)
T ss_dssp HHHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHH-HHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred HHHHHHHHHHCCCcCCCHHHHHHHHHHHcCCHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 9999999999999999999999999987777777777 799999999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCCCCccchhhhchHHHHHHHHHhcccccc
Q psy12161 302 VVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIF 340 (342)
Q Consensus 302 ~vfgP~L~~~~~~~~~~~~~~~~~~~~v~~lI~~~~~iF 340 (342)
+||||+|+|++ +....++++...+.++++||+||+.||
T Consensus 161 ~vf~P~Ll~~~-~~~~~~~~~~~~~~~v~~LI~~~~~iF 198 (198)
T 1tx4_A 161 VVFGPNLLWAK-DAAITLKAINPINTFTKFLLDHQGELF 198 (198)
T ss_dssp HHHHHHHCCCS-SHHHHHHTHHHHHHHHHHHHHTHHHHC
T ss_pred hhhcccccCCC-CccccHHHHHHHHHHHHHHHHhHHHhC
Confidence 99999999998 555667777888999999999999998
No 3
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.6e-44 Score=316.43 Aligned_cols=192 Identities=32% Similarity=0.500 Sum_probs=169.8
Q ss_pred CCCCCccCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCC-CHHHHHH
Q psy12161 145 YSPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHN-DIHLAAV 223 (342)
Q Consensus 145 ~~~~~~FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~-d~~~va~ 223 (342)
+.++++||++|++++++ +.+|.++.+|+++|++ +|+++|||||++|+...++++++.+|+|..+++++ |+|++|+
T Consensus 7 ~~~~~vFG~~L~~~~~~---~~vP~~v~~~i~~l~~-~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~d~~~va~ 82 (201)
T 3msx_B 7 PMPGQLFGISLPNICEN---DNLPKPVLDMLFFLNQ-KGPLTKGIFRQSANVKSCRELKEKLNSGVEVHLDCESIFVIAS 82 (201)
T ss_dssp ---CCCTTSCHHHHSGG---GCCCHHHHHHHHHHHH-HGGGSTTTTTSCCCHHHHHHHHHHHHHTCCCCTTSSCHHHHHH
T ss_pred CCCCCeeCCcHHHHhcC---CCCCHHHHHHHHHHHH-hCCCCCCeeeeCCCHHHHHHHHHHhccCCCCCCCcccHHHHHH
Confidence 55678999999999886 4699999999999999 99999999999999999999999999999888877 9999999
Q ss_pred HHHHHHHhCCCCCCChHhHHHHHccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHh
Q psy12161 224 LLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVV 303 (342)
Q Consensus 224 llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~v 303 (342)
+||.|||+||+||+|.++|+.++.+.+..+++...+.++.++.+||+.|+.+|++|+.||++|+++++.||||++|||+|
T Consensus 83 lLK~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~v 162 (201)
T 3msx_B 83 VLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVC 162 (201)
T ss_dssp HHHHHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCChhhhhhh
Confidence 99999999999999999999999977665544433389999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCCCccch--hhhchHHHHHHHHHhcccccc
Q psy12161 304 FAPNLIWAPVNSQLSL--SAISPINSFVYFMFNNYHSIF 340 (342)
Q Consensus 304 fgP~L~~~~~~~~~~~--~~~~~~~~~v~~lI~~~~~iF 340 (342)
|||+|+|++....... ......+.++++||+||++||
T Consensus 163 f~P~ll~~~~~~~~~~~~~~~~~~~~iv~~LI~~~~~IF 201 (201)
T 3msx_B 163 VAPSILWPPASSSPELENEFTKKVSLLIQFLIENCLRIF 201 (201)
T ss_dssp HHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhccccCCCCCCChHHHHHHHHHHHHHHHHHHHhhHhhC
Confidence 9999999994433222 223455677999999999998
No 4
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=100.00 E-value=5.7e-44 Score=317.14 Aligned_cols=193 Identities=25% Similarity=0.452 Sum_probs=174.3
Q ss_pred CCCCccCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCC----CHHHH
Q psy12161 146 SPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHN----DIHLA 221 (342)
Q Consensus 146 ~~~~~FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~----d~~~v 221 (342)
...++||++|++++.+ .+..||.++.+|+++|++ +|+++|||||++|+...++++++.+|+|+.+++.+ |+|++
T Consensus 15 ~~~~vFG~~L~~~~~~-~~~~vP~~v~~~i~~l~~-~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~dvh~v 92 (214)
T 3byi_A 15 IKDQIFGSHLHKVCER-ENSTVPWFVKQCIEAVEK-RGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVV 92 (214)
T ss_dssp CCCCSTTSCHHHHHHH-HTCSSCHHHHHHHHHHHH-HTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGGGCSHHHH
T ss_pred CcCCccCCcHHHHHHH-cCCCCChHHHHHHHHHHH-hCCCCCCccccCCCHHHHHHHHHHHhcCCCCCCCcccccchHHH
Confidence 3567999999999987 567899999999999998 99999999999999999999999999998777753 99999
Q ss_pred HHHHHHHHHhCCCCCCChHhHHHHHccCCCChh-HHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhh
Q psy12161 222 AVLLKTFLRELDEPLLTYDLYDEILLFPTLNKD-ERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNL 300 (342)
Q Consensus 222 a~llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nL 300 (342)
|++||.|||+||+||+|.++|+.++++.+..+. +++. .++.++.+||+.|+.+|.+|+.||++|+++++.||||++||
T Consensus 93 a~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~-~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NL 171 (214)
T 3byi_A 93 TGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIE-AVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSL 171 (214)
T ss_dssp HHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHHHHHcccCCCCCHHHh
Confidence 999999999999999999999999997665554 4555 89999999999999999999999999999999999999999
Q ss_pred hHhhhcccCCCCCCCccchhhhchHHHHHHHHHhccccccc
Q psy12161 301 AVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIFI 341 (342)
Q Consensus 301 a~vfgP~L~~~~~~~~~~~~~~~~~~~~v~~lI~~~~~iF~ 341 (342)
|+||||+|+|++.+......++..++.++++||+||++||.
T Consensus 172 a~vf~P~Ll~~~~~~~~~~~~~~~~~~vve~LI~~~~~iF~ 212 (214)
T 3byi_A 172 GIVFGPTLLRAENETGNMAIHMVYQNQIAELMLSEYSKIFG 212 (214)
T ss_dssp HHHHHHHHHCCTTSSSCHHHHHHHHHHHHHHHHHTHHHHHC
T ss_pred HHHhccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999954433334566778999999999999996
No 5
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=100.00 E-value=2e-43 Score=319.71 Aligned_cols=194 Identities=22% Similarity=0.424 Sum_probs=176.4
Q ss_pred CCCCCccCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCC---CHHHH
Q psy12161 145 YSPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHN---DIHLA 221 (342)
Q Consensus 145 ~~~~~~FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~---d~~~v 221 (342)
...+++||++|+.++.. +..||.++.+|+++|++ +|+++|||||++|+...++++++.+|+|..+++.+ |+|++
T Consensus 48 ~~~~~vFGv~L~~~~~~--~~~vP~iv~~~i~~l~~-~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dvh~v 124 (246)
T 3fk2_A 48 TWESNYFGVPLTTVVTP--EKPIPIFIERCIEYIEA-TGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTV 124 (246)
T ss_dssp -CCCSSTTSCGGGGCCS--SSCSCHHHHHHHHHHHH-HCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCHHHH
T ss_pred ccCCCeeCCCHHHHhcC--CCCCChHHHHHHHHHHH-hCCCCCCeeEeCCcHHHHHHHHHHHhcCCCCCcccccCcHHHH
Confidence 45678999999999875 46899999999999999 99999999999999999999999999998777654 89999
Q ss_pred HHHHHHHHHhCCCCCCChHhHHHHHccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhh
Q psy12161 222 AVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLA 301 (342)
Q Consensus 222 a~llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa 301 (342)
|++||.|||+||+||+|.++|+.++.+.+.++.+.....++.++.+||+.|+.+|.+|+.||++|+++++.|+||+.|||
T Consensus 125 a~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NLA 204 (246)
T 3fk2_A 125 AGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLS 204 (246)
T ss_dssp HHHHHHHHHHSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHH
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCchHHhH
Confidence 99999999999999999999999999877666554444899999999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCCCCccchhhhchHHHHHHHHHhccccccc
Q psy12161 302 VVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIFI 341 (342)
Q Consensus 302 ~vfgP~L~~~~~~~~~~~~~~~~~~~~v~~lI~~~~~iF~ 341 (342)
+||||+|+|+..++...+.+....+.++++||+||+.||.
T Consensus 205 ivf~P~Llrp~~~~~~~~~~~~~~~~ive~LI~~~~~iF~ 244 (246)
T 3fk2_A 205 ICFWPTLMRPDFSTMDALTATRTYQTIIELFIQQCPFFFY 244 (246)
T ss_dssp HHHHHHHHCCCSSSSCHHHHHHHHHHHHHHHHHTHHHHHC
T ss_pred HHhcccccCCCCccHHHHHHHHHHHHHHHHHHHhHHHhcC
Confidence 9999999998855555667777888999999999999995
No 6
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=100.00 E-value=1.5e-43 Score=313.38 Aligned_cols=193 Identities=26% Similarity=0.412 Sum_probs=173.7
Q ss_pred CCCCCccCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCC--C-CHHHH
Q psy12161 145 YSPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFH--N-DIHLA 221 (342)
Q Consensus 145 ~~~~~~FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~--~-d~~~v 221 (342)
...+++||++|++++.+ +..||.++.+|+++|++ +|+++|||||++|+...++++++.+++|..+++. + |+|++
T Consensus 7 ~~~~~~FG~~L~~~~~~--~~~vP~iv~~~i~~l~~-~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~v 83 (209)
T 2ee4_A 7 GWESNYFGMPLQDLVTA--EKPIPLFVEKCVEFIED-TGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAV 83 (209)
T ss_dssp SSCCSSSSSCHHHHSCS--SCCSCHHHHHHHHHHHH-TCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHHH
T ss_pred CCCCCeeCCcHHHHHhc--CCCCChHHHHHHHHHHH-hCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccCCCCHHHH
Confidence 44568999999999875 45799999999999999 9999999999999999999999999999877663 2 99999
Q ss_pred HHHHHHHHHhCCCCCCChHhHHHHHccCCCChh-HHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhh
Q psy12161 222 AVLLKTFLRELDEPLLTYDLYDEILLFPTLNKD-ERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNL 300 (342)
Q Consensus 222 a~llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nL 300 (342)
|++||.|||+||+||+|.++|+.++++.+.++. +++. .++.++.+||+.|+.+|++|+.||++|+++++.||||++||
T Consensus 84 a~lLK~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~-~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NL 162 (209)
T 2ee4_A 84 AGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLH-ALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNL 162 (209)
T ss_dssp HHHHHHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHH-HHHHHTTTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHH
Confidence 999999999999999999999999997766654 4555 89999999999999999999999999999999999999999
Q ss_pred hHhhhcccCCCCCCCccchhhhchHHHHHHHHHhccccccc
Q psy12161 301 AVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIFI 341 (342)
Q Consensus 301 a~vfgP~L~~~~~~~~~~~~~~~~~~~~v~~lI~~~~~iF~ 341 (342)
|+||||+|+|++.++...+.+....+.++++||+||+.||.
T Consensus 163 aivf~P~L~~~~~~~~~~l~~~~~~~~vve~LI~~~~~iF~ 203 (209)
T 2ee4_A 163 SICFWPTLMRPDFENREFLSTTKIHQSVVETFIQQCQFFFY 203 (209)
T ss_dssp HHHHHHHHSCCCCCSSCCSCCCTTHHHHHHHHHHTHHHHTT
T ss_pred HHHhcccccCCCCccHHHHHHhHHHHHHHHHHHHhhHHHcC
Confidence 99999999999855544455566778999999999999995
No 7
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-43 Score=312.11 Aligned_cols=191 Identities=23% Similarity=0.381 Sum_probs=170.7
Q ss_pred CCCccCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcC-CCCCCCC----CHHHH
Q psy12161 147 PTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNG-EPILFHN----DIHLA 221 (342)
Q Consensus 147 ~~~~FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g-~~~~~~~----d~~~v 221 (342)
..++||++|++++.+ .+..+|.++.+|+++|++ +|+++|||||++|+...++++++.+|+| ..+++.. |+|++
T Consensus 5 ~~~vFG~~L~~~~~~-~~~~vP~iv~~~i~~l~~-~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~v 82 (202)
T 2osa_A 5 VKKVYSCDLTTLVKA-HTTKRPMVVDMCIREIES-RGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINII 82 (202)
T ss_dssp --CCTTSCHHHHHHH-HTCSSCHHHHHHHHHHHH-HCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHH
T ss_pred CCCccCCChHHHHHH-cCCCCCcHHHHHHHHHHH-hCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHHHH
Confidence 357999999999988 467799999999999999 9999999999999999999999999984 5556542 99999
Q ss_pred HHHHHHHHHhCCCCCCChHhHHHHHccCCCChh-HHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhh
Q psy12161 222 AVLLKTFLRELDEPLLTYDLYDEILLFPTLNKD-ERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNL 300 (342)
Q Consensus 222 a~llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nL 300 (342)
|++||.|||+||+||+|.++|+.++++.+..+. +++. .++.++.+||+.|+.+|.+|+.||++|+++++.||||++||
T Consensus 83 a~lLK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~-~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~NL 161 (202)
T 2osa_A 83 TGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLE-TLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENL 161 (202)
T ss_dssp HHHHHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHH-HHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHhccccCCCCCHHHH
Confidence 999999999999999999999999997666554 4455 89999999999999999999999999999999999999999
Q ss_pred hHhhhcccCCCCCCCc-cchhhhchHHHHHHHHHhcccccc
Q psy12161 301 AVVFAPNLIWAPVNSQ-LSLSAISPINSFVYFMFNNYHSIF 340 (342)
Q Consensus 301 a~vfgP~L~~~~~~~~-~~~~~~~~~~~~v~~lI~~~~~iF 340 (342)
|+||||+|+|++..+. ..+.++..++.++++||+||+.||
T Consensus 162 a~vf~P~Ll~~~~~~~~~~~~~~~~~~~vve~LI~~~~~iF 202 (202)
T 2osa_A 162 GIVFGPTLMRSPELDAMAALNDIRYQRLVVELLIKNEDILF 202 (202)
T ss_dssp HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHccccCCCCCccHHHHHHHHHHHHHHHHHHHHcccccC
Confidence 9999999999985444 345677888999999999999998
No 8
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=100.00 E-value=1.8e-42 Score=310.59 Aligned_cols=193 Identities=25% Similarity=0.446 Sum_probs=165.0
Q ss_pred CCCCCccCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCC-----CHH
Q psy12161 145 YSPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHN-----DIH 219 (342)
Q Consensus 145 ~~~~~~FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~-----d~~ 219 (342)
..+.++||++|++++.+ .+..||.++.+|+++|++ +|+ +|||||++|+...++++++.+++|...++.. |+|
T Consensus 16 ~~~~~vFG~~L~~~~~~-~~~~vP~iv~~~i~~i~~-~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~dvh 92 (229)
T 3iug_A 16 FQGERVFGCDLGEHLLN-SGFEVPQVLQSCTAFIER-YGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIH 92 (229)
T ss_dssp --CCCSTTSCHHHHHHH-HCCSSCHHHHHHHHHHHH-HCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTTCHH
T ss_pred CCCCCeECcchHHHHHh-cCCCCCHHHHHHHHHHHH-cCC-CCCCeecCCcHHHHHHHHHHHhcCCCCCccccccccchH
Confidence 34568999999999888 567899999999999999 999 8999999999999999999999998766653 899
Q ss_pred HHHHHHHHHHHhCCCCCCChHhHHHHHccCCCChh-HHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChh
Q psy12161 220 LAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKD-ERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWN 298 (342)
Q Consensus 220 ~va~llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~ 298 (342)
++|++||.|||+||+||+|.++|+.++++....++ +++. .++.++.+||+.|+.+|.+|+.||++|+++++.||||++
T Consensus 93 ~va~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~-~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 171 (229)
T 3iug_A 93 SVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLI-KIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAK 171 (229)
T ss_dssp HHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHH-HHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHH
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCChH
Confidence 99999999999999999999999999997665554 4555 899999999999999999999999999999999999999
Q ss_pred hhhHhhhcccCCCCCCC------ccchhhhchHHHHHHHHHhccccccc
Q psy12161 299 NLAVVFAPNLIWAPVNS------QLSLSAISPINSFVYFMFNNYHSIFI 341 (342)
Q Consensus 299 nLa~vfgP~L~~~~~~~------~~~~~~~~~~~~~v~~lI~~~~~iF~ 341 (342)
|||+||||+|+|++..+ .....+...++.++++||+||+.||.
T Consensus 172 NLAivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~vve~LI~~~~~iF~ 220 (229)
T 3iug_A 172 NLAIVWAPNLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNHVDVLFS 220 (229)
T ss_dssp HHHHHHHHHHCCC-------------------CHHHHHHHHHTHHHHTC
T ss_pred HHHHHHhccccCCCcccccccchHHHHHHHHHHHHHHHHHHHhHHHhCC
Confidence 99999999999998422 12344566678999999999999995
No 9
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=100.00 E-value=3.1e-42 Score=306.30 Aligned_cols=189 Identities=17% Similarity=0.307 Sum_probs=159.7
Q ss_pred CCccCCChhHhhhhC-CCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCC-CCCCCC-CHHHHHHH
Q psy12161 148 TQQFGASLQHIKDNN-GGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGE-PILFHN-DIHLAAVL 224 (342)
Q Consensus 148 ~~~FG~~L~~l~~~~-~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~-~~~~~~-d~~~va~l 224 (342)
...||++|++++.+. ++..||.++.+|+++|++ +|+++|||||++|+... +++++.+|+|. .+++++ |+|++|++
T Consensus 5 ~~~fGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~-~gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~~~~~~dv~~va~l 82 (216)
T 1pbw_A 5 VEQQALTLPDLAEQFAPPDIAPPLLIKLVEAIEK-KGLECSTLYRTQSSSNL-AELRQLLDCDTPSVDLEMIDVHVLADA 82 (216)
T ss_dssp -------CCCHHHHCCTTSCSCHHHHHHHHHHHH-HHTTCTTTTSSCCSCCT-THHHHHSCSSSSCCCGGGBCHHHHHHH
T ss_pred cccCCCcHHHHHhccCCCCCcCHHHHHHHHHHHH-cCCCCCCeeeCCChHHH-HHHHHHHHcCCCCCCccccCHHHHHHH
Confidence 468999999999874 457899999999999999 99999999999999999 99999999974 677766 99999999
Q ss_pred HHHHHHhCCCCCCChHhHHHHHccCC-CChh-HHHHHHHHHHHh--hCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhh
Q psy12161 225 LKTFLRELDEPLLTYDLYDEILLFPT-LNKD-ERSRYVKILILE--KLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNL 300 (342)
Q Consensus 225 lK~fLr~Lp~pLi~~~~~~~~~~~~~-~~~~-~~~~~~~~~ll~--~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nL 300 (342)
||.|||+||+||+|.++|+.++.+.+ .++. +++. .++.++. +||+.|+.+|++|+.||++|+++++.||||++||
T Consensus 83 LK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~~-~l~~ll~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NL 161 (216)
T 1pbw_A 83 FKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQ-LLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVL 161 (216)
T ss_dssp HHHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHHHH-HHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHH
Confidence 99999999999999999999999764 4444 4555 8999999 9999999999999999999999999999999999
Q ss_pred hHhhhcccCCCCCCCccchhhhchHHHHHHHHHhcccccccC
Q psy12161 301 AVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIFII 342 (342)
Q Consensus 301 a~vfgP~L~~~~~~~~~~~~~~~~~~~~v~~lI~~~~~iF~~ 342 (342)
|+||||+|+|++.++.. . + ..++.++++||+||+.||..
T Consensus 162 Aivf~P~Ll~~~~~~~~-~-~-~~~~~vve~LI~~~~~iF~~ 200 (216)
T 1pbw_A 162 SEIFSPMLFRFSAASSD-N-T-ENLIKVIEILISTEWNERQP 200 (216)
T ss_dssp HHHHHHHHHTCSSCCHH-H-H-HHHHHHHHHHHHTTC-----
T ss_pred HHHHhhhcCCCCCCchh-h-h-HHHHHHHHHHHhhhHHhcCC
Confidence 99999999999954433 2 2 77899999999999999963
No 10
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=100.00 E-value=2.3e-41 Score=303.63 Aligned_cols=192 Identities=21% Similarity=0.359 Sum_probs=153.1
Q ss_pred CCccCCChhHhhhhCC--CCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHH-HHhcCC--CCCCC---C-CH
Q psy12161 148 TQQFGASLQHIKDNNG--GDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQT-ACNNGE--PILFH---N-DI 218 (342)
Q Consensus 148 ~~~FG~~L~~l~~~~~--~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~-~~~~g~--~~~~~---~-d~ 218 (342)
.++||+||...+++.. ...+|.++.+|+++|++ +|+++|||||++|+..+++++++ .+|+|. .+++. + |+
T Consensus 16 ~pvfgvpl~~~~~~~~~l~~~~p~iv~~ci~~le~-~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dv 94 (231)
T 1f7c_A 16 EPVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAVET-RGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEI 94 (231)
T ss_dssp ---------------CCSSHHHHHHHHHHHHHHHH-HCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCH
T ss_pred CCccCCcchhccccccccCCcCccHHHHHHHHHHH-hCCCCCCeeeeCCcHHHHHHHHHHHhCcCCCcccCccccccccH
Confidence 3599999999877631 13478999999999999 99999999999999999999986 578764 45554 2 99
Q ss_pred HHHHHHHHHHHHhCCCCCCChHhHHHHHccCCCChh-HHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCCh
Q psy12161 219 HLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKD-ERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTW 297 (342)
Q Consensus 219 ~~va~llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~ 297 (342)
|++|++||.|||+||+||+|.++|+.++.+.+..+. +++. .++.++.+||+.|+.+|.+|+.||++|+++++.||||+
T Consensus 95 h~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~r~~-~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~ 173 (231)
T 1f7c_A 95 KTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVS-EIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTV 173 (231)
T ss_dssp HHHHHHHHHHHHTSSSCTTCHHHHHHHHHHHTCSSHHHHHH-HHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHhcCCCCCCCH
Confidence 999999999999999999999999999997666554 4555 89999999999999999999999999999999999999
Q ss_pred hhhhHhhhcccCCCCCCCccchhhhchHHHHHHHHHhccccccc
Q psy12161 298 NNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIFI 341 (342)
Q Consensus 298 ~nLa~vfgP~L~~~~~~~~~~~~~~~~~~~~v~~lI~~~~~iF~ 341 (342)
+|||+||||+|+|++.++...+.++..++.++++||+||+.||.
T Consensus 174 ~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~vve~LI~~~~~iF~ 217 (231)
T 1f7c_A 174 ANLGVVFGPTLLRPQEETVAAIMDIKFQNIVIEILIENHEKIFN 217 (231)
T ss_dssp HHHHHHHHHHHSCC---CCSGGGGHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999965555667777888999999999999995
No 11
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.9e-41 Score=306.32 Aligned_cols=195 Identities=29% Similarity=0.399 Sum_probs=159.9
Q ss_pred CCCCCccCCChhHhhhhC--CCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCCCHHHHH
Q psy12161 145 YSPTQQFGASLQHIKDNN--GGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHNDIHLAA 222 (342)
Q Consensus 145 ~~~~~~FG~~L~~l~~~~--~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~d~~~va 222 (342)
+.++++||++|++++.+. ++..||.++.+|+++|++ |+++|||||++|+...++++++.+|+|.......|+|++|
T Consensus 59 ~~~~~vFGv~L~~l~~~~~~~~~~iP~~l~~~~~~le~--gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~va 136 (271)
T 3eap_A 59 EIGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLED--HIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIA 136 (271)
T ss_dssp --CCSSTTSCGGGSCEEEETTTEEEEHHHHHHHHHHGG--GTTC--------CHHHHHHHHHHHHHC-----CCCHHHHH
T ss_pred CCCCCeeCCcHHHHHhhccCCCCCcChHHHHHHHHHHh--CCCCCCeeeeCCCHHHHHHHHHHHHcCCCCcccccHHHHH
Confidence 556789999999987642 356799999999999976 7999999999999999999999999998664333999999
Q ss_pred HHHHHHHHhCCCCCCChHhHHHHHccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhH
Q psy12161 223 VLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAV 302 (342)
Q Consensus 223 ~llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~ 302 (342)
++||.|||+||+||+|.++|+.++.+.+.+++++.. .++.++..||+.|+.+|.+|+.||++|+++++.|+||++|||+
T Consensus 137 ~lLK~fLReLPePLl~~~ly~~~~~~~~~~~~~~~~-~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 215 (271)
T 3eap_A 137 GLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNK-ATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAV 215 (271)
T ss_dssp HHHHHHHHHSSSCSSCGGGHHHHHHHTTSCHHHHHH-HHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred HHHHHHHHhCCcccCCHHHHHHHHHHHHHhHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHH
Confidence 999999999999999999999999988877776666 7888999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCCCc-c---chhhhchHHHHHHHHHhcccccccC
Q psy12161 303 VFAPNLIWAPVNSQ-L---SLSAISPINSFVYFMFNNYHSIFII 342 (342)
Q Consensus 303 vfgP~L~~~~~~~~-~---~~~~~~~~~~~v~~lI~~~~~iF~~ 342 (342)
||||+|+|++.+.. . ...++...+.++++||+||++||.|
T Consensus 216 vf~P~Ll~~~~~~~~~~~~~~~~~~~~~~vve~LI~~~~~IF~v 259 (271)
T 3eap_A 216 IFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTLIDYASDIGRV 259 (271)
T ss_dssp HHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHTGGGTTCC
T ss_pred HHHhHhccCCCCccchhhhHHHHHHHHHHHHHHHHHhHHHHhCC
Confidence 99999999994222 1 1234556788999999999999976
No 12
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-40 Score=297.90 Aligned_cols=192 Identities=25% Similarity=0.352 Sum_probs=164.4
Q ss_pred CCCCCccCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhc-CCCCCCCC-CHHHHH
Q psy12161 145 YSPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNN-GEPILFHN-DIHLAA 222 (342)
Q Consensus 145 ~~~~~~FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~-g~~~~~~~-d~~~va 222 (342)
..++++||++|++++++ .+..||.++.+|+++|++ +|+++|||||++|+...++++++.+++ |..+++++ |+|++|
T Consensus 15 ~~~~~vFGv~L~~~~~~-~~~~vP~~v~~~i~~l~~-~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va 92 (228)
T 3kuq_A 15 YFQGSVFGVPLTVNVQR-TGQPLPQSIQQAMRYLRN-HCLDQVGLFRKSGVKSRIQALRQMNEGAIDCVNYEGQSAYDVA 92 (228)
T ss_dssp BCTTSSTTCCHHHHHHH-HSSSSCHHHHHHHHHHHH-HCTTSTTTTTSCCCHHHHHHHHHHHTBSSSCCCCTTCCHHHHH
T ss_pred CCCCCEECCchHHHHHH-cCCCCCHHHHHHHHHHHH-hCCCcCCeeecCCCHHHHHHHHHHHhcCCCcCCcccCCHHHHH
Confidence 34568999999999988 567899999999999999 999999999999999999999999986 55777777 999999
Q ss_pred HHHHHHHHhCCCCCCChHhHHHHHccCCC-ChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhh
Q psy12161 223 VLLKTFLRELDEPLLTYDLYDEILLFPTL-NKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLA 301 (342)
Q Consensus 223 ~llK~fLr~Lp~pLi~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa 301 (342)
++||.|||+||+||+|.++|+.|+.+.+. +.++++. .++.++.+||+.|+.+|.+|+.||++|+++++.|+||+.|||
T Consensus 93 ~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~-~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 171 (228)
T 3kuq_A 93 DMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQ-AIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLA 171 (228)
T ss_dssp HHHHHHHHHSSSCTTCSSHHHHHHHHHHHSCGGGHHH-HHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCchhHhH
Confidence 99999999999999999999999986554 3445566 799999999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCCCCcc-------------------chhhhchHHHHHHHHHhccccc
Q psy12161 302 VVFAPNLIWAPVNSQL-------------------SLSAISPINSFVYFMFNNYHSI 339 (342)
Q Consensus 302 ~vfgP~L~~~~~~~~~-------------------~~~~~~~~~~~v~~lI~~~~~i 339 (342)
+||||+|+|+...... .+.+.......+.+||+|+++|
T Consensus 172 ivf~P~Ll~~~~~~~~s~~~~~~~r~~~~~~~~~~~l~e~~aa~~~l~~mi~~~~~l 228 (228)
T 3kuq_A 172 VCLAPSLFHLNTLKRENSSPRVMQRKQSLGKPDQKDLNENLAATQGLAHMIAECKKL 228 (228)
T ss_dssp HHHHHHHHTCCCC-------------------CHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHhhhhcCCCCCCCCCCCcchhhhccccCCCcHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999998853211 1222345578899999999875
No 13
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=100.00 E-value=1e-39 Score=286.94 Aligned_cols=187 Identities=25% Similarity=0.378 Sum_probs=164.2
Q ss_pred CCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCC-CCCC--CHHHHHHHHHHH
Q psy12161 152 GASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPI-LFHN--DIHLAAVLLKTF 228 (342)
Q Consensus 152 G~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~-~~~~--d~~~va~llK~f 228 (342)
|.+|++++.+ .+..||.++.+|+++|++ +|+++|||||++|+..+++++++.+++|... ++.+ |+|++|++||.|
T Consensus 3 ~g~L~~~~~~-~~~~vP~iv~~~i~~l~~-~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~~~~~~~d~h~va~lLK~f 80 (201)
T 2ovj_A 3 EGMLADFVSQ-TSPMIPSIVVHCVNEIEQ-RGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDF 80 (201)
T ss_dssp CCCGGGGCCS-SSSCCCHHHHHHHHHHHH-HTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCCCGGGCCCHHHHHHHHHHH
T ss_pred CCcHHHHhcc-cCCCCChHHHHHHHHHHH-hCCCcCceeeeCCcHHHHHHHHHHHHcCCCCccccccCCHHHHHHHHHHH
Confidence 3467787776 578899999999999999 9999999999999999999999999999754 3443 999999999999
Q ss_pred HHhCCCCCCChHhHHHHHccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhccc
Q psy12161 229 LRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNL 308 (342)
Q Consensus 229 Lr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP~L 308 (342)
||+||+||+|.++|+.++++.+..+.+.....++.++.+||+.|+.+|.+|+.||++|+++ +.||||++|||+||||+|
T Consensus 81 lreLpePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~-~~NkM~~~NLa~vf~P~l 159 (201)
T 2ovj_A 81 LRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLAKVFGPTI 159 (201)
T ss_dssp HHTSSSCTTCTTTHHHHHHHHHCSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHcc-cccCCCHHHHHHHhhhhh
Confidence 9999999999999999999766655544333799999999999999999999999999996 689999999999999999
Q ss_pred CCCCCCCc---cchhhhchHHHHHHHHHhccccccc
Q psy12161 309 IWAPVNSQ---LSLSAISPINSFVYFMFNNYHSIFI 341 (342)
Q Consensus 309 ~~~~~~~~---~~~~~~~~~~~~v~~lI~~~~~iF~ 341 (342)
+|++..+. ..+.++..++.++++||+|+++||.
T Consensus 160 l~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~if~ 195 (201)
T 2ovj_A 160 VAHAVPNPDPVTMLQDIKRQPKVVERLLSLPLEYWS 195 (201)
T ss_dssp TCCSSSSCCHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99874332 2456778889999999999999984
No 14
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=100.00 E-value=1.9e-38 Score=311.94 Aligned_cols=191 Identities=23% Similarity=0.381 Sum_probs=171.8
Q ss_pred CCCccCCChhHhhhhCCCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcC-CCCCCCC----CHHHH
Q psy12161 147 PTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNG-EPILFHN----DIHLA 221 (342)
Q Consensus 147 ~~~~FG~~L~~l~~~~~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g-~~~~~~~----d~~~v 221 (342)
..++||++|++++.+ .+..||.++.+|+++|++ +|+++|||||++|+...+++|++.+|+| +.+++.. |+|++
T Consensus 266 ~~~vFG~~L~~~~~~-~~~~vP~iv~~~i~~le~-~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~v 343 (463)
T 3cxl_A 266 VKKVYSCDLTTLVKA-HTTKRPMVVDMCIREIES-RGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINII 343 (463)
T ss_dssp CCCCTTSCHHHHHHH-HTCSSCHHHHHHHHHHHH-HCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHH
T ss_pred cccccccccchhhhc-cCCCCCeeHHHHHHHHHh-cCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcchh
Confidence 467999999999987 467899999999999999 9999999999999999999999999984 3445432 99999
Q ss_pred HHHHHHHHHhCCCCCCChHhHHHHHccCCCChh-HHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhh
Q psy12161 222 AVLLKTFLRELDEPLLTYDLYDEILLFPTLNKD-ERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNL 300 (342)
Q Consensus 222 a~llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nL 300 (342)
|++||.|||+||+||+|.++|+.++++.+..+. +++. .++.++.+||+.|+.+|.+|+.||++|+++++.|+||+.||
T Consensus 344 a~lLK~flReLPePLi~~~ly~~~~~~~~~~~~~~~~~-~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NL 422 (463)
T 3cxl_A 344 TGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLE-TLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENL 422 (463)
T ss_dssp HHHHHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHH
Confidence 999999999999999999999999997666554 4555 89999999999999999999999999999999999999999
Q ss_pred hHhhhcccCCCCCCCc-cchhhhchHHHHHHHHHhcccccc
Q psy12161 301 AVVFAPNLIWAPVNSQ-LSLSAISPINSFVYFMFNNYHSIF 340 (342)
Q Consensus 301 a~vfgP~L~~~~~~~~-~~~~~~~~~~~~v~~lI~~~~~iF 340 (342)
|+||||+|++++.++. ..+.++..++.++++||+|++.||
T Consensus 423 Aivf~P~Ll~~~~~~~~~~~~~~~~~~~vve~LI~~~~~iF 463 (463)
T 3cxl_A 423 GIVFGPTLMRSPELDAMAALNDIRYQRLVVELLIKNEDILF 463 (463)
T ss_dssp HHHHHHHHCCCCCSCTTGGGGGHHHHHHHHHHHHHTHHHHC
T ss_pred HHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHhchhhcC
Confidence 9999999999985443 456678888999999999999998
No 15
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}
Probab=100.00 E-value=6.4e-39 Score=283.60 Aligned_cols=182 Identities=20% Similarity=0.199 Sum_probs=143.3
Q ss_pred CCCCccCCChhHhhhhC-CCCCCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCC-CHHHHHH
Q psy12161 146 SPTQQFGASLQHIKDNN-GGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHN-DIHLAAV 223 (342)
Q Consensus 146 ~~~~~FG~~L~~l~~~~-~~~~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~-d~~~va~ 223 (342)
...++||++|++++++. +...||.++.+|+++|++ +|+++|||||++|+. +++ .++.+++++ |+|++|+
T Consensus 18 ~~~~vFGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~-~Gl~~eGIfR~sG~~-----lr~---~~~~~dl~~~dvh~va~ 88 (214)
T 2xs6_A 18 LYFQSMGLTLPDLPEQFSPPDVAPPLLVKLVEAIER-TGLDSESHYRPELPA-----PRT---DWSLSDVDQWDTAALAD 88 (214)
T ss_dssp -------CCCCCHHHHCCTTCCSCHHHHHHHHHHHH-HCTTCSGGGCCSCCC-----CCC---CCCCTTGGGCCHHHHHH
T ss_pred CCCcccCcCHHHHHHhhCCCCCCCHHHHHHHHHHHH-hCCCCCCCeeeCHHH-----HHh---ccccCCCccCCHHHHHH
Confidence 34579999999999842 456799999999999999 999999999999999 333 344566666 9999999
Q ss_pred HHHHHHHhCCCCCCChHhHHHHHccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHh
Q psy12161 224 LLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVV 303 (342)
Q Consensus 224 llK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~v 303 (342)
+||.|||+||+||+|.++|+.++++.+..+.... +..++.+||+.|+.+|++|+.||++|+++++.||||+.|||+|
T Consensus 89 lLK~flReLPePLi~~~ly~~~i~~~~~~~~~~~---~~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAiv 165 (214)
T 2xs6_A 89 GIKSFLLALPAPLVTPEASAEARRALREAAGPVG---PALEPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGAT 165 (214)
T ss_dssp HHHHHHHHSSSCSSCHHHHHHHHHHHHCC--CCG---GGGSTTTSCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHH---HHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHH
Confidence 9999999999999999999999987554332211 1268999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCCC---------ccchhhhchHHHHHHHHHhccccccc
Q psy12161 304 FAPNLIWAPVNS---------QLSLSAISPINSFVYFMFNNYHSIFI 341 (342)
Q Consensus 304 fgP~L~~~~~~~---------~~~~~~~~~~~~~v~~lI~~~~~iF~ 341 (342)
|||+|+|++.++ ...+.++..++.++++||+| .+|+
T Consensus 166 f~P~Ll~~~~~~~~~~~~~~~~~~~~d~~~~~~vve~LI~n--~ife 210 (214)
T 2xs6_A 166 FGPLLLRAPPPPSSPPPGGAPDGSEPSPDFPALLVEKLLQE--HLEE 210 (214)
T ss_dssp HHHHHHC------------------CCTTHHHHHHHHHHHH--HHHC
T ss_pred HhhhhcCCcccccccccccchhhhHHhHHHHHHHHHHHHhh--hccc
Confidence 999999999532 34556778889999999976 4564
No 16
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=100.00 E-value=1.2e-34 Score=276.34 Aligned_cols=142 Identities=25% Similarity=0.353 Sum_probs=133.4
Q ss_pred CCcHHHHHHHHHHhCCCCcccccceeccccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhCCCCCCChHhHHHH
Q psy12161 166 VIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHNDIHLAAVLLKTFLRELDEPLLTYDLYDEI 245 (342)
Q Consensus 166 ~iP~vl~~~i~~l~~~~gl~~egIFR~~g~~~~v~~l~~~~~~g~~~~~~~d~~~va~llK~fLr~Lp~pLi~~~~~~~~ 245 (342)
.||.++.+|+++|++ +|+++|||||++|+...++++++.+|+|...++..|+|++|++||.|||+||+||+|.++|+.+
T Consensus 198 ~iP~~v~~~i~~l~~-~Gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~dvh~va~lLK~fLReLPePLi~~~ly~~~ 276 (366)
T 3qis_A 198 QVPKEIWLLVDHLFK-YACHQEDLFQTPGMQEELQQIIDCLDTSIPETIPGSNHSVAEALLIFLEALPEPVICYELYQRC 276 (366)
T ss_dssp SSCHHHHHHHHHHHH-HCTTCTTTTTSCCCHHHHHHHHHHHHHCCCSSCCSCHHHHHHHHHHHHHHCSSCSSCHHHHHHH
T ss_pred CcChHHHHHHHHHHh-cCCCCCCeEeCCCCHHHHHHHHHHHcCCCCCccccCHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence 789999999999999 9999999999999999999999999999988776699999999999999999999999999999
Q ss_pred HccCCCChhHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHhhcCCCCCCChhhhhHhhhcccCCCCCC
Q psy12161 246 LLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVN 314 (342)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~ll~~Lp~~n~~~L~~l~~~l~~v~~~s~~NkMt~~nLa~vfgP~L~~~~~~ 314 (342)
+.+.+.. . .++.++.+||+.|+.+|.||+.||++|+++++.|+||++|||+||||+|+|++.+
T Consensus 277 ~~~~~~~-----~-~~~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA~vf~P~Llr~~~~ 339 (366)
T 3qis_A 277 LDSAYDP-----R-ICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPPN 339 (366)
T ss_dssp HHHTTCH-----H-HHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHSCCCC-
T ss_pred HHHhhhH-----H-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhcccCCCc
Confidence 9976532 2 5788999999999999999999999999999999999999999999999999943
No 17
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.93 E-value=4.8e-26 Score=206.31 Aligned_cols=119 Identities=15% Similarity=0.230 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHhhhhccCCeEEEEEecCCCCCCCCCHHHHHHHHHHhhHHhhhccceEEEecCChhHHHHHHH-HHhHh
Q psy12161 5 TKEATQTQYTYVLDKFVEQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQI-FKAAI 83 (342)
Q Consensus 5 ~~e~~~~y~~~~l~~~~~~~y~~vy~~~~~~~~~~p~~~wl~~~y~~l~~~~~knlk~~yivhp~~~~k~~~~~-~~~~~ 83 (342)
.||.|+.|++++++++++++|++||+|||+++.|.|+.+|++++|+.+|++++|||+++|+||||+|.|.+++. .+++.
T Consensus 39 D~e~Ll~~vl~tl~~~~~~~y~lV~d~T~~~~~n~p~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~ 118 (256)
T 3pg7_A 39 NGDLLIYHVLLTLKPYYAKPYEIVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLT 118 (256)
T ss_dssp CHHHHHHHHHHHHTTTTTSCEEEEEECTTCCGGGCCCHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHT
T ss_pred CHHHHHHHHHHHHHHhcCCCeEEEEECCCCCcccCCcHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhcccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999987665 56777
Q ss_pred hHhhhcceeeccchHHHHhcccccccCCChHHHHHHHHHH
Q psy12161 84 SAKFGRKMIYINYLHELKSHLNLDQLCIPRQVIEHDERLT 123 (342)
Q Consensus 84 s~k~~~Ki~~~~~L~~L~~~i~~~ql~iP~~v~~~d~~l~ 123 (342)
+.|+++|++|++++++|.++|+.+|+.||+.+.++|+.++
T Consensus 119 ~~k~~~Ki~fv~sl~eL~~~i~~~~L~LP~~t~~~~~d~r 158 (256)
T 3pg7_A 119 GLKGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALEEDLK 158 (256)
T ss_dssp TTTTCTTEEEESSTTGGGGTSCGGGCCCCHHHHHTTSSCE
T ss_pred ccccCCcEEEECCHHHHHhhcCHHHcCCChHHHhhcccce
Confidence 8899999999999999999999999999999999987654
No 18
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.81 E-value=9.8e-21 Score=173.83 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhhhhccCCeEEEEEecCCCCCCCCCHHHHHHHHHHhhHHhhhccceEEEecCChhHHHHH-HHHHhHh
Q psy12161 5 TKEATQTQYTYVLDKFVEQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVL-QIFKAAI 83 (342)
Q Consensus 5 ~~e~~~~y~~~~l~~~~~~~y~~vy~~~~~~~~~~p~~~wl~~~y~~l~~~~~knlk~~yivhp~~~~k~~~-~~~~~~~ 83 (342)
.+|.++.|++++++++++++|++||+|||++..|.|+..|++++|+.+|++++||++++|+|||++|.|..+ ++++++.
T Consensus 58 D~e~Lly~il~tl~~~~~~~y~lV~D~T~~~~~n~p~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~ 137 (290)
T 3peg_A 58 NGDLLIYHVLLTLKPYYAKPYEIVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLT 137 (290)
T ss_dssp CHHHHHHHHHHHHTTTTTSCEEEEEECTTCCGGGCCCHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGG
T ss_pred CHHHHHHHHHHHHHHhcCCCeEEEEEcCCCCccCCChHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhh
Confidence 589999999999999999999999999999999999999999999999999999999999999999999866 5778999
Q ss_pred hHhhhcceeeccchHHHHhcccccccCCChH
Q psy12161 84 SAKFGRKMIYINYLHELKSHLNLDQLCIPRQ 114 (342)
Q Consensus 84 s~k~~~Ki~~~~~L~~L~~~i~~~ql~iP~~ 114 (342)
+.|+++|+.|++++.+|.++++.+|+.+|+.
T Consensus 138 ~~k~~~k~v~~~~~~~L~~~i~~~~~~lp~~ 168 (290)
T 3peg_A 138 GLKGSKRLVFIDCPGKLAEHIEHEQQKLPAA 168 (290)
T ss_dssp GGTTCTTEEEESSSCC---------------
T ss_pred hhhcCceEEEcCCHHHHHhhCCHHHhcCccc
Confidence 9999999999999999999999999999873
No 19
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=98.57 E-value=8.6e-08 Score=86.42 Aligned_cols=103 Identities=11% Similarity=0.122 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhhhhccC------CeEEEEEecCCCCCC--CCCHHHHHHHHHHhhHHhhhccceEEEecCChhHHHHHH
Q psy12161 6 KEATQTQYTYVLDKFVEQ------DYSLVYFHYGLTSKN--KPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQ 77 (342)
Q Consensus 6 ~e~~~~y~~~~l~~~~~~------~y~~vy~~~~~~~~~--~p~~~wl~~~y~~l~~~~~knlk~~yivhp~~~~k~~~~ 77 (342)
.+.++++.+..+|..+.. .+++|+.-+|++-.+ .++.++++++.+.+...|-..|+++||||+.|+.+++|.
T Consensus 113 ~~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~ 192 (262)
T 1r5l_A 113 AYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFS 192 (262)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHH
Confidence 355677777777655543 489999999986544 356889999999999999999999999999999999999
Q ss_pred HHHhHhhHhhhcceeeccc--hHHHHhccccccc
Q psy12161 78 IFKAAISAKFGRKMIYINY--LHELKSHLNLDQL 109 (342)
Q Consensus 78 ~~~~~~s~k~~~Ki~~~~~--L~~L~~~i~~~ql 109 (342)
+++||++++..+||+++.+ .++|.++|+ +++
T Consensus 193 ~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~L 225 (262)
T 1r5l_A 193 MIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DIL 225 (262)
T ss_dssp HHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTS
T ss_pred HHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhC
Confidence 9999999999999999954 789999997 654
No 20
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=98.52 E-value=1.3e-07 Score=87.84 Aligned_cols=105 Identities=15% Similarity=0.278 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhhhhcc------CCeEEEEEecCCCCCC--CCCHHHHHHHHHHhhHHhhhccceEEEecCChhHHHHH
Q psy12161 5 TKEATQTQYTYVLDKFVE------QDYSLVYFHYGLTSKN--KPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVL 76 (342)
Q Consensus 5 ~~e~~~~y~~~~l~~~~~------~~y~~vy~~~~~~~~~--~p~~~wl~~~y~~l~~~~~knlk~~yivhp~~~~k~~~ 76 (342)
..++++++++..+|.... +.+++|+.-+|++-.+ ..+.++++++.+.+...|-.+|+++||||+.|+..++|
T Consensus 171 ~~~~~~r~~~~~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~ 250 (316)
T 3hx3_A 171 TFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTY 250 (316)
T ss_dssp CHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHH
Confidence 357788888888876665 3589999999986433 24577899999999999999999999999999999999
Q ss_pred HHHHhHhhHhhhcceeec-cchHHHHhccccccc
Q psy12161 77 QIFKAAISAKFGRKMIYI-NYLHELKSHLNLDQL 109 (342)
Q Consensus 77 ~~~~~~~s~k~~~Ki~~~-~~L~~L~~~i~~~ql 109 (342)
.+++||++++..+||... +++++|.++|+.+++
T Consensus 251 ~ivkpfl~~kt~~KI~~~~~~~~~L~~~I~~~~L 284 (316)
T 3hx3_A 251 NVVKPFLKSKLLERVFVHGDDLSGFYQEIDENIL 284 (316)
T ss_dssp HHHGGGCCHHHHTTEEEEETCCHHHHHHSCGGGS
T ss_pred HHHHHhCCHHhhhheEEeCCCHHHHHhhCCHhhC
Confidence 999999999999999888 468999999987765
No 21
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=98.46 E-value=2.4e-07 Score=85.24 Aligned_cols=107 Identities=13% Similarity=0.214 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhhhhc--------------cCCeEEEEEecCCCCCCCCC-HHHHHHHHHHhhHHhhhccceEEEecCC
Q psy12161 5 TKEATQTQYTYVLDKFV--------------EQDYSLVYFHYGLTSKNKPS-LSWLWSAYRAFDRKYKKNLKALYLVHPT 69 (342)
Q Consensus 5 ~~e~~~~y~~~~l~~~~--------------~~~y~~vy~~~~~~~~~~p~-~~wl~~~y~~l~~~~~knlk~~yivhp~ 69 (342)
.+++++++++..+|.+. .+.+++|+.-+|++-.+.+. .++++++.+.+...|=..|+++||||+.
T Consensus 136 ~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P 215 (296)
T 1aua_A 136 SEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAP 215 (296)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECch
Confidence 35666666666555322 23588999988886544332 4678888899999999999999999999
Q ss_pred hhHHHHHHHHHhHhhHhhhcceeeccc--hHHHHhcccccccCCCh
Q psy12161 70 GFIRVVLQIFKAAISAKFGRKMIYINY--LHELKSHLNLDQLCIPR 113 (342)
Q Consensus 70 ~~~k~~~~~~~~~~s~k~~~Ki~~~~~--L~~L~~~i~~~ql~iP~ 113 (342)
|+.+++|.+++||++++..+||+++.+ .++|.++|+.+ .+|.
T Consensus 216 ~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~--~LP~ 259 (296)
T 1aua_A 216 FGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAE--NLPV 259 (296)
T ss_dssp HHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSS--SSBG
T ss_pred HHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHh--hCcH
Confidence 999999999999999999999999875 78899998655 4566
No 22
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=98.41 E-value=4.5e-07 Score=87.03 Aligned_cols=105 Identities=19% Similarity=0.297 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhhhhc-------------cCCeEEEEEecCCCCCCC--CCHHHHHHHHHHhhHHhhhccceEEEecCC
Q psy12161 5 TKEATQTQYTYVLDKFV-------------EQDYSLVYFHYGLTSKNK--PSLSWLWSAYRAFDRKYKKNLKALYLVHPT 69 (342)
Q Consensus 5 ~~e~~~~y~~~~l~~~~-------------~~~y~~vy~~~~~~~~~~--p~~~wl~~~y~~l~~~~~knlk~~yivhp~ 69 (342)
..+++++|++..+|... ...+++|+.-+|++-.+. |...+++++.+.+...|-..|+++||||+.
T Consensus 116 ~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P 195 (403)
T 1olm_A 116 SKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAP 195 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCC
Confidence 34667777776665432 246899999888865443 567899999999999999999999999999
Q ss_pred hhHHHHHHHHHhHhhHhhhcceeeccc--hHHHHhccccccc
Q psy12161 70 GFIRVVLQIFKAAISAKFGRKMIYINY--LHELKSHLNLDQL 109 (342)
Q Consensus 70 ~~~k~~~~~~~~~~s~k~~~Ki~~~~~--L~~L~~~i~~~ql 109 (342)
|+..++|.+++||++++..+||+++.+ .++|.++|+.+++
T Consensus 196 ~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~L 237 (403)
T 1olm_A 196 KLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQV 237 (403)
T ss_dssp TTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGS
T ss_pred HHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhC
Confidence 999999999999999999999999964 6789999976643
No 23
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=98.14 E-value=2.4e-06 Score=79.53 Aligned_cols=89 Identities=15% Similarity=0.236 Sum_probs=74.6
Q ss_pred CCeEEEEEecCCCCCCCCC-HHHHHHHHHHhhHHhhhccceEEEecCChhHHHHHHHHHhHhhHhhhcceeeccc--hHH
Q psy12161 23 QDYSLVYFHYGLTSKNKPS-LSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKAAISAKFGRKMIYINY--LHE 99 (342)
Q Consensus 23 ~~y~~vy~~~~~~~~~~p~-~~wl~~~y~~l~~~~~knlk~~yivhp~~~~k~~~~~~~~~~s~k~~~Ki~~~~~--L~~ 99 (342)
+..++|+.-.|++-.+.+. .++++++.+.+...|-..|+++|||++.|+.+++|.+++||++++..+||.++.+ .++
T Consensus 183 e~~~~IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~ 262 (320)
T 3q8g_A 183 ETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKE 262 (320)
T ss_dssp CCEEEEEECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHH
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHH
Confidence 3467888888876444322 5678889999999999999999999999999999999999999999999999965 689
Q ss_pred HHhcccccccCCCh
Q psy12161 100 LKSHLNLDQLCIPR 113 (342)
Q Consensus 100 L~~~i~~~ql~iP~ 113 (342)
|.++|+.++ +|.
T Consensus 263 L~~~i~~~~--LP~ 274 (320)
T 3q8g_A 263 LLKQIPIEN--LPV 274 (320)
T ss_dssp HHHHSCGGG--SBG
T ss_pred HHhhCChhh--CCh
Confidence 999997664 455
No 24
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=46.79 E-value=6.3 Score=30.11 Aligned_cols=16 Identities=44% Similarity=0.739 Sum_probs=14.0
Q ss_pred HhhhccceEEEecCCh
Q psy12161 55 KYKKNLKALYLVHPTG 70 (342)
Q Consensus 55 ~~~knlk~~yivhp~~ 70 (342)
+.||.++++.||||-.
T Consensus 89 kLKKSVrGLVVVHPMT 104 (123)
T 2lf0_A 89 KLKKSVRGLVVVHPMT 104 (123)
T ss_dssp HHHHHTTSCEEECSSS
T ss_pred HHhhcccceeEecCch
Confidence 6799999999999943
No 25
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=34.06 E-value=1.5e+02 Score=22.39 Aligned_cols=93 Identities=10% Similarity=0.070 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHHHhhhhccCCeEEEEEecCCCCCCCCCHHHHHHHHHHhhHHhhhccceEEEecCChhHHHHHHHHHhH
Q psy12161 3 RSTKEATQTQYTYVLDKFVEQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKAA 82 (342)
Q Consensus 3 ~~~~e~~~~y~~~~l~~~~~~~y~~vy~~~~~~~~~~p~~~wl~~~y~~l~~~~~knlk~~yivhp~~~~k~~~~~~~~~ 82 (342)
.+.|+.+..-+...++.......-+.+.-+.+.. ..+.-+++-.+ +..++.+...++=||=..-|.+.+..++++|
T Consensus 32 ~~d~~~l~~~l~~~l~~~~~~~i~ll~~~~~f~G---~~~~a~~~d~k-~~~~h~~~~~RiAvV~d~~W~~~~~~~~~~~ 107 (126)
T 2q3l_A 32 HEDYEQMTPLLESALAGIKTPEIVALIDITELDG---LSLHAAWDDLK-LGLKHGKEFKRVAIIGQGELQEWATRVANWF 107 (126)
T ss_dssp HHHHHHHHHHHHHHTTTCCSSCEEEEEEEEEEEE---ECHHHHHHHHH-HHHHHGGGEEEEEEECCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEEEEecCCCC---CCHHHHHHHHH-hhhhHHhcCCEEEEEcChHHHHHHHHHHhhc
Confidence 4667777666666677654433544443333311 11333333322 5678889999999999999999999999998
Q ss_pred hhHhhhcceeeccchHHHHhc
Q psy12161 83 ISAKFGRKMIYINYLHELKSH 103 (342)
Q Consensus 83 ~s~k~~~Ki~~~~~L~~L~~~ 103 (342)
++. .++|.+...+-.++
T Consensus 108 ~~~----evk~F~~~~~A~~W 124 (126)
T 2q3l_A 108 TPG----EFKFFEDKRDALDW 124 (126)
T ss_dssp CSS----EEEEESCHHHHHHH
T ss_pred cCC----ceeccCCHHHHHHH
Confidence 554 46777666655443
Done!