RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12161
(342 letters)
>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP,
also known as RhoGAP-1, contains a C-terminal RhoGAP
domain and an N-terminal Sec14 domain which binds
phosphatidylinositol 3,4,5-trisphosphate
(PtdIns(3,4,5)P3). It is ubiquitously expressed and
preferentially active on Cdc42. This subgroup also
contains closely related ARHGAP8. Small GTPases cluster
into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 195
Score = 255 bits (653), Expect = 3e-85
Identities = 104/197 (52%), Positives = 141/197 (71%), Gaps = 6/197 (3%)
Query: 147 PTQQFGASLQHIKDNNGG-DVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTA 205
PTQQFG SLQ +K+ N + I P++R+ V+YL Q AL TEG+FRRSA+ +V++ Q
Sbjct: 2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYL-QAHALTTEGIFRRSANTQVVKEVQQK 60
Query: 206 CNNGEPILFHN--DIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKIL 263
N GEP+ F D+HL AV+LKTFLREL EPLLT+DLYD+I+ F ++K+ER VK L
Sbjct: 61 YNMGEPVDFDQYEDVHLPAVILKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVERVKQL 120
Query: 264 ILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAIS 323
+ LP +NY VLKY++ FL ++ SD NKMT +NLAVVF PNL+WA ++ +SLSAI+
Sbjct: 121 LQT-LPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVFGPNLLWAK-DASMSLSAIN 178
Query: 324 PINSFVYFMFNNYHSIF 340
PIN+F F+ ++ IF
Sbjct: 179 PINTFTKFLLDHQDEIF 195
>gnl|CDD|238090 cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for
Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small
GTPases. Small GTPases (G proteins) cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when bound
to GDP. The Rho family of small G proteins, which
includes Cdc42Hs, activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. G proteins generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude. The
RhoGAPs are one of the major classes of regulators of
Rho G proteins.
Length = 169
Score = 150 bits (381), Expect = 9e-45
Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 5/169 (2%)
Query: 170 ILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHN--DIHLAAVLLKT 227
I+ +C++YL + + L TEG+FR S S + + + + + GE I D+H A LLK
Sbjct: 3 IIEKCIEYLEK-NGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKL 61
Query: 228 FLRELDEPLLTYDLYDEIL-LFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKI 286
+LREL EPL+ ++LYDE + L +++ER +K +L+ LP +N +LKY++ L KI
Sbjct: 62 YLRELPEPLIPFELYDEFIELAKIEDEEERIEALK-ELLKSLPPENRDLLKYLLKLLHKI 120
Query: 287 EDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNN 335
S++NKMT +NLA+VFAP L+ P + L I +N V F+ N
Sbjct: 121 SQNSEVNKMTASNLAIVFAPTLLRPPDSDDELLEDIKKLNEIVEFLIEN 169
>gnl|CDD|216027 pfam00620, RhoGAP, RhoGAP domain. GTPase activator proteins
towards Rho/Rac/Cdc42-like small GTPases.
Length = 152
Score = 146 bits (372), Expect = 2e-43
Identities = 56/151 (37%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
Query: 169 PILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFH---NDIHLAAVLL 225
I+ +CV++L + L+TEG+FR S S + +++ + A ++GE + D+H+ A LL
Sbjct: 2 LIVEKCVEFLEK-RGLDTEGIFRVSGSASRIKELREAFDSGEDVDLDLEEEDVHVVASLL 60
Query: 226 KTFLRELDEPLLTYDLYDEIL-LFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLS 284
K FLREL EPLLT++LY+E + + +++ER ++ +L KLP N L+Y++ L+
Sbjct: 61 KLFLRELPEPLLTFELYEEFIEAAKSEDEEERVEALR-ELLRKLPPANRDTLRYLLAHLN 119
Query: 285 KIEDRSDLNKMTWNNLAVVFAPNLIWAPVNS 315
++ S++NKM +NLA+VF P L+ P +
Sbjct: 120 RVAQNSEVNKMNAHNLAIVFGPTLLRPPDDE 150
>gnl|CDD|214618 smart00324, RhoGAP, GTPase-activator protein for Rho-like GTPases.
GTPase activator proteins towards Rho/Rac/Cdc42-like
small GTPases. etter domain limits and outliers.
Length = 174
Score = 140 bits (354), Expect = 1e-40
Identities = 65/176 (36%), Positives = 102/176 (57%), Gaps = 6/176 (3%)
Query: 165 DVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEP---ILFHNDIHLA 221
I I+ +C++YL + L+TEG++R S S + V++ + A ++G L D+H
Sbjct: 1 KPIPIIVEKCIEYLEK-RGLDTEGIYRVSGSKSRVKELRDAFDSGPDPDLDLSEYDVHDV 59
Query: 222 AVLLKTFLRELDEPLLTYDLYDEILLFPTL-NKDERSRYVKILILEKLPTDNYTVLKYIV 280
A LLK FLREL EPL+TY+LY+E + L ++ ER R ++ +L LP N L+Y++
Sbjct: 60 AGLLKLFLRELPEPLITYELYEEFIEAAKLEDETERLRALR-ELLSLLPPANRATLRYLL 118
Query: 281 TFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNY 336
L+++ + S+ NKMT NLA+VF P L+ P SL I N+ + F+ N
Sbjct: 119 AHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEVASLKDIRHQNTVIEFLIENA 174
>gnl|CDD|239851 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
Nadrin-like proteins. Nadrin, also named Rich-1, has
been shown to be involved in the regulation of
Ca2+-dependent exocytosis in neurons and recently has
been implicated in tight junction maintenance in
mammalian epithelium. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 203
Score = 127 bits (320), Expect = 3e-35
Identities = 70/205 (34%), Positives = 107/205 (52%), Gaps = 15/205 (7%)
Query: 147 PTQQFGASLQ-HIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTA 205
FG L+ H+K IA + CV L + + EGLFR + +++ + A
Sbjct: 1 EKPVFGTPLEEHLKRTG--REIALPIEACVMCLLE-TGMNEEGLFRVGGGASKLKRLKAA 57
Query: 206 CNNG----EPILFHNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNK-DERSRYV 260
+ G F++D H A LK++LREL +PLLTY+LY++ + NK DE R
Sbjct: 58 LDAGTFSLPLDEFYSDPHAVASALKSYLRELPDPLLTYNLYEDWV--QAANKPDEDERLQ 115
Query: 261 KIL-ILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSL 319
I IL KLP +N L+Y++ FLSK+ +SD NKM+ +N+A+V APNL+WA L+
Sbjct: 116 AIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVLAPNLLWAKNEGSLAE 175
Query: 320 SAI---SPINSFVYFMFNNYHSIFI 341
A + + V + ++ F
Sbjct: 176 MAAGTSVHVVAIVELIISHADWFFP 200
>gnl|CDD|239867 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391
and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain,
and ANXL repeats. ArhGAP20 is activated by Rap1 and
induces inactivation of Rho, which in turn leads to
neurite outgrowth. Small GTPases cluster into distinct
families, and all act as molecular switches, active in
their GTP-bound form but inactive when GDP-bound. The
Rho family of GTPases activates effectors involved in a
wide variety of developmental processes, including
regulation of cytoskeleton formation, cell proliferation
and the JNK signaling pathway. GTPases generally have a
low intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 192
Score = 115 bits (289), Expect = 8e-31
Identities = 67/192 (34%), Positives = 103/192 (53%), Gaps = 7/192 (3%)
Query: 151 FGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNG- 209
FG L +I +++ + PIL + L Q TEG+FRRSA+ ++ + N+G
Sbjct: 2 FGQPLSNICEDDN--LPKPIL-DMLSLLYQ-KGPSTEGIFRRSANAKACKELKEKLNSGV 57
Query: 210 EPILFHNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFP-TLNKDERSRYVKILILEKL 268
E L + L A +LK FLR + LL+ DLY+E + N++E+ ++ L L+KL
Sbjct: 58 EVDLKAEPVLLLASVLKDFLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELQRL-LDKL 116
Query: 269 PTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSF 328
P N +LK+++ L I S+ NKM NLAV AP+L+W P +S+L + + S
Sbjct: 117 PRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLWPPASSELQNEDLKKVTSL 176
Query: 329 VYFMFNNYHSIF 340
V F+ N IF
Sbjct: 177 VQFLIENCQEIF 188
>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25:
GTPase-activator protein (GAP) domain for Rho-like
GTPases found in ARHGAP22, 24 and 25-like proteins;
longer isoforms of these proteins contain an additional
N-terminal pleckstrin homology (PH) domain. ARHGAP25
(KIA0053) has been identified as a GAP for Rac1 and
Cdc42. Short isoforms (without the PH domain) of
ARHGAP24, called RC-GAP72 and p73RhoGAP, and of
ARHGAP22, called p68RacGAP, has been shown to be
involved in angiogenesis and endothelial cell capillary
formation. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 199
Score = 109 bits (274), Expect = 1e-28
Identities = 62/166 (37%), Positives = 92/166 (55%), Gaps = 6/166 (3%)
Query: 164 GDVIAPIL-RQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILF--HNDIHL 220
G + PIL QCVD++ + L+ EGLFR LV+Q Q A + GE F D+H
Sbjct: 18 GPRLVPILVEQCVDFIRE-HGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHT 76
Query: 221 AAVLLKTFLRELDEPLLTYDLYDEILLFP-TLNKDERSRYVKIL-ILEKLPTDNYTVLKY 278
A LLK +LREL EP++ + Y++ L L+KDE +++ + LP NY +L Y
Sbjct: 77 VASLLKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSY 136
Query: 279 IVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISP 324
I FL +++ S +NKM+ NLA VF PN++ V ++ +P
Sbjct: 137 ICRFLDEVQSNSSVNKMSVQNLATVFGPNILRPKVEDPATIMEGTP 182
>gnl|CDD|239859 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of ArhGAP11A-like proteins. The mouse
homolog of human ArhGAP11A has been detected as a gene
exclusively expressed in immature ganglion cells,
potentially playing a role in retinal development. The
exact function of ArhGAP11A is unknown. Small GTPases
cluster into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 202
Score = 103 bits (258), Expect = 3e-26
Identities = 53/127 (41%), Positives = 70/127 (55%)
Query: 182 DALETEGLFRRSASVALVRQCQTACNNGEPILFHNDIHLAAVLLKTFLRELDEPLLTYDL 241
D L TEGLFR+S SV ++ + GE L A LLK F REL EPLL YDL
Sbjct: 33 DHLSTEGLFRKSGSVVRQKELKAKLEGGEACLSSALPCDVAGLLKQFFRELPEPLLPYDL 92
Query: 242 YDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLA 301
++ +L L DE + +L+ LP ++ L+Y +FL + R NKM +NLA
Sbjct: 93 HEALLKAQELPTDEERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLA 152
Query: 302 VVFAPNL 308
V+FAPNL
Sbjct: 153 VIFAPNL 159
>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
FAM13A1, isoform a-like proteins. The function of
FAM13A1a is unknown. Small GTPases cluster into distinct
families, and all act as molecular switches, active in
their GTP-bound form but inactive when GDP-bound. The
Rho family of GTPases activates effectors involved in a
wide variety of developmental processes, including
regulation of cytoskeleton formation, cell proliferation
and the JNK signaling pathway. GTPases generally have a
low intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by up several orders of magnitude.
Length = 189
Score = 102 bits (256), Expect = 4e-26
Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 7/163 (4%)
Query: 151 FGASLQHIKDNN-GGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNG 209
FG LQ ++ + + ++R V+YL Q LE EGLFR + + V + ++G
Sbjct: 3 FGVPLQELQQAGQPENGVPAVVRHIVEYLEQ-HGLEQEGLFRVNGNAETVEWLRQRLDSG 61
Query: 210 EPILF--HNDIHLAAVLLKTFLRELDEPLLTYDLYDEIL-LF-PTLNKDERSRYVKILIL 265
E + D+ AA LL+ FL+EL E L+ L ++ L+ +DE R ++ L L
Sbjct: 62 EEVDLSKEADVCSAASLLRLFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDL-L 120
Query: 266 EKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNL 308
++LP NY++LK++ FLS + + N+MT NLA VF P++
Sbjct: 121 QQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVFGPDV 163
>gnl|CDD|239865 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP]
protein for Rho-like small GTPases) domain of fungal
BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and
is specifically involved in the control of the initial
assembly of the septin ring in yeast bud formation.
Small GTPases cluster into distinct families, and all
act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 190
Score = 96.7 bits (241), Expect = 6e-24
Identities = 53/161 (32%), Positives = 90/161 (55%), Gaps = 9/161 (5%)
Query: 162 NGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPI-LFHN---- 216
G + ++ +C++YL + A+ EG+FR S S ++++Q + N + LF +
Sbjct: 17 YNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYP 76
Query: 217 DIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKD--ERSRYVKILILEKLPTDNYT 274
D+H A LLK +LREL +L +L+++ N D +R+ +K L+ +LP NY
Sbjct: 77 DVHTVAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLV-SQLPQANYD 135
Query: 275 VLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNL-IWAPVN 314
+L + +FL KI + SD+NKM N+ +VF+P L I A +
Sbjct: 136 LLYVLFSFLRKIIEHSDVNKMNLRNVCIVFSPTLNIPAGIF 176
>gnl|CDD|239863 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein
for Rho3 and Rho4 and plays a role in low-pH response.
Small GTPases cluster into distinct families, and all
act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 192
Score = 95.9 bits (239), Expect = 1e-23
Identities = 56/201 (27%), Positives = 98/201 (48%), Gaps = 20/201 (9%)
Query: 151 FGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNG- 209
FG L+ + G D + I+ QC+ + L EG++R S +V+ V + + +
Sbjct: 1 FGVPLEDLILREG-DNVPNIVYQCI-QAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDP 58
Query: 210 ------EPILFHNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKI- 262
P + +DIH A LLK F REL EPLLT L E + +DE R +
Sbjct: 59 LNVLLISPEDYESDIHSVASLLKLFFRELPEPLLTKALSREFIE-AAKIEDESRRRDALH 117
Query: 263 LILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAI 322
++ LP NY L+ ++ L++I++ +N+M+ NNLA+++ P L+ A ++
Sbjct: 118 GLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIWGPTLMNAAPDN------A 171
Query: 323 SPINSFVYFM---FNNYHSIF 340
+ ++ + +N + IF
Sbjct: 172 ADMSFQSRVIETLLDNAYQIF 192
>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain present in class IX myosins. Class IX
myosins contain a characteristic head domain, a neck
domain, a tail domain which contains a C6H2-zinc binding
motif and a RhoGAP domain. Class IX myosins are
single-headed, processive myosins that are partly
cytoplasmic, and partly associated with membranes and
the actin cytoskeleton. Class IX myosins are implicated
in the regulation of neuronal morphogenesis and function
of sensory systems, like the inner ear. There are two
major isoforms, myosin IXA and IXB with several splice
variants, which are both expressed in developing
neurons. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 186
Score = 91.0 bits (226), Expect = 7e-22
Identities = 52/178 (29%), Positives = 96/178 (53%), Gaps = 9/178 (5%)
Query: 151 FGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACN-NG 209
FG SL + + P++ + + + L TEG++R+S S +++ + + +
Sbjct: 1 FGVSLSSLTSEDRS---VPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDP 57
Query: 210 EPILFHN-DIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTL-NKDERSRYVKILILEK 267
+ + + IH+ +LK +LREL EPL+T++LY+ L L K ER R + +LE+
Sbjct: 58 DSVNLEDYPIHVITSVLKQWLRELPEPLMTFELYENFLRAMELEEKQERVRALYS-VLEQ 116
Query: 268 LPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAP--VNSQLSLSAIS 323
LP N L+ ++ L ++ + ++N+M+ N LA+VFAP ++ P + SL +S
Sbjct: 117 LPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILRCPDTADPLQSLQDVS 174
>gnl|CDD|239841 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP6-like proteins. ArhGAP6 shows GAP activity
towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is
often deleted in microphthalmia with linear skin defects
syndrome (MLS); MLS is a severe X-linked developmental
disorder. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 206
Score = 87.1 bits (216), Expect = 3e-20
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 22/193 (11%)
Query: 170 ILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHND--IHLAAVLLKT 227
++ C +L + L+T G+FR +S VRQ + + G ++ + +H A LLK
Sbjct: 12 LVESCCQHLEK-HGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKE 70
Query: 228 FLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKI- 286
F R++ +PLL +LY + L DE+ +++LI LP N L ++ FL +
Sbjct: 71 FFRDMPDPLLPRELYTAFIGTALLEPDEQLEALQLLI-YLLPPCNCDTLHRLLKFLHTVA 129
Query: 287 ---EDRSDL-------NKMTWNNLAVVFAPNLI-------WAPVNSQLSLSAISPINSFV 329
D D NKMT NLA +F PNL+ V + L + + I + V
Sbjct: 130 EHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLHKQKSGEREFVQASLRIEESTAIINVV 189
Query: 330 YFMFNNYHSIFII 342
M +NY +F++
Sbjct: 190 QTMIDNYEELFMV 202
>gnl|CDD|239850 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain present in
ARAPs. ARAPs (also known as centaurin deltas) contain,
besides the RhoGAP domain, an Arf GAP, ankyrin repeat
ras-associating, and PH domains. Since their ArfGAP
activity is PIP3-dependent, ARAPs are considered
integration points for phosphoinositide, Arf and Rho
signaling. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 184
Score = 80.4 bits (199), Expect = 4e-18
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 23/152 (15%)
Query: 170 ILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHND------------ 217
I+ +C+D+++Q L +EG++R++ + V++ A F D
Sbjct: 18 IVDKCIDFITQ-HGLMSEGIYRKNGKNSSVKKLLEA--------FRKDARSVQLREGEYT 68
Query: 218 IHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTL-NKDERSRYVKILILEKLPTDNYTVL 276
+H A +LK FLR+L +PLLT +L+ E + L NKDER K LI +LP N L
Sbjct: 69 VHDVADVLKRFLRDLPDPLLTSELHAEWIEAAELENKDERIARYKELI-RRLPPINRATL 127
Query: 277 KYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNL 308
K ++ L +++ SD N+M+ +NLA+VF P L
Sbjct: 128 KVLIGHLYRVQKHSDENQMSVHNLALVFGPTL 159
>gnl|CDD|239843 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of GMIP (Gem interacting protein) and
PARG1 (PTPL1-associated RhoGAP1). GMIP plays important
roles in neurite growth and axonal guidance, and
interacts with Gem, a member of the RGK subfamily of the
Ras small GTPase superfamily, through the N-terminal
half of the protein. GMIP contains a C-terminal RhoGAP
domain. GMIP inhibits RhoA function, but is inactive
towards Rac1 and Cdc41. PARG1 interacts with Rap2, also
a member of the Ras small GTPase superfamily whose exact
function is unknown, and shows strong preference for
Rho. Small GTPases cluster into distinct families, and
all act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 203
Score = 80.2 bits (198), Expect = 9e-18
Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 20/176 (11%)
Query: 165 DVIAPILRQCVDYLSQPDALETEGLFRRSASVALV-RQCQTACNNGEPI--LFHNDIHLA 221
D + I+++C + AL +G++R S S A V + CQ A NG+ + L H
Sbjct: 14 DEVPFIIKKCTSEIEN-RALGVQGIYRVSGSKARVEKLCQ-AFENGKDLVELSELSPHDI 71
Query: 222 AVLLKTFLRELDEPLLTYDLYDEILLFP--TLNKDERSRYVKILI------------LEK 267
+ +LK FLR+L EPL+ + LY++ + E + I L +
Sbjct: 72 SSVLKLFLRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLRQ 131
Query: 268 LPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWA-PVNSQLSLSAI 322
LP NY L++++ L ++ ++ + NKM+ NNL +VF P LI P ++ +SLS++
Sbjct: 132 LPASNYNTLQHLIAHLYRVAEQFEENKMSPNNLGIVFGPTLIRPRPGDADVSLSSL 187
>gnl|CDD|239873 cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain of GMIP (Gem
interacting protein). GMIP plays important roles in
neurite growth and axonal guidance, and interacts with
Gem, a member of the RGK subfamily of the Ras small
GTPase superfamily, through the N-terminal half of the
protein. GMIP contains a C-terminal RhoGAP domain. GMIP
inhibits RhoA function, but is inactive towards Rac1 and
Cdc41. Small GTPases cluster into distinct families, and
all act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 200
Score = 79.5 bits (196), Expect = 2e-17
Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 19/171 (11%)
Query: 183 ALETEGLFRRSASVALVRQCQTACNNGEPI--LFHNDIHLAAVLLKTFLRELDEPLLTYD 240
AL +G++R S S A V + A NG + L + H +LK FL+EL EP+L +
Sbjct: 31 ALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKHFLKELPEPVLPFQ 90
Query: 241 LYDE-ILLFPTLNKD------------ERSRYVKILILEKLPTDNYTVLKYIVTFLSKIE 287
LYD+ I L L +D R +K L L +LP NY L++++ L ++
Sbjct: 91 LYDDFIALAKELQRDSEKAAESPSIVENIIRSLKEL-LGRLPVSNYNTLRHLMAHLYRVA 149
Query: 288 DRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAI---SPINSFVYFMFNN 335
+R + NKM+ NNL +VF P L+ V +S+ + V F+ +N
Sbjct: 150 ERFEDNKMSPNNLGIVFGPTLLRPLVGGDVSMICLLDTGYQAQLVEFLISN 200
>gnl|CDD|239857 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP19-like proteins. The function of ArhGAP19 is
unknown. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 208
Score = 79.0 bits (195), Expect = 3e-17
Identities = 60/191 (31%), Positives = 94/191 (49%), Gaps = 28/191 (14%)
Query: 171 LRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPI-----LFHNDIHLAAVLL 225
+ Q ++YL + L EGLFR+ + A ++ + N+G + FH H A +L
Sbjct: 13 IYQLIEYLEK--NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFH--AHDCATVL 68
Query: 226 KTFLRELDEPLLTY----------DLY---DEILLFPTLNKDERSRYVKILILEKLPTDN 272
K FL EL EPLLT+ DL ++ +K+ +++L+L LP +N
Sbjct: 69 KGFLGELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLL-LLPEEN 127
Query: 273 YTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVN---SQLSLSAISPINSFV 329
+LK I+ L + D NKM+ +NLA++F P+LI P N L +A +NS V
Sbjct: 128 RNLLKLILDLLYQTAKHEDKNKMSADNLALLFTPHLIC-PRNLTPEDLHENAQK-LNSIV 185
Query: 330 YFMFNNYHSIF 340
FM + +F
Sbjct: 186 TFMIKHSQKLF 196
>gnl|CDD|239838 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain of p190-like
proteins. p190, also named RhoGAP5, plays a role in
neuritogenesis and axon branch stability. p190 shows a
preference for Rho, over Rac and Cdc42, and consists of
an N-terminal GTPase domain and a C-terminal GAP domain.
The central portion of p190 contains important
regulatory phosphorylation sites. Small GTPases cluster
into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 185
Score = 78.3 bits (193), Expect = 3e-17
Identities = 45/145 (31%), Positives = 80/145 (55%), Gaps = 5/145 (3%)
Query: 169 PI-LRQCVDYLSQPDALETEGLFRRSASVALVRQCQTAC---NNGEPILFHNDIHLAAVL 224
PI L +CV+++ LETEG++R S + + Q +N + + ++ A
Sbjct: 16 PIFLEKCVEFIEA-TGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGA 74
Query: 225 LKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLS 284
LK+F EL +PL+ Y ++ E++ +N E+ + +L+K P +N+ V KY++T L+
Sbjct: 75 LKSFFSELPDPLIPYSMHLELVEAAKINDREQRLHALKELLKKFPPENFDVFKYVITHLN 134
Query: 285 KIEDRSDLNKMTWNNLAVVFAPNLI 309
K+ S +N MT NL++ F P L+
Sbjct: 135 KVSQNSKVNLMTSENLSICFWPTLM 159
>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain. This family
includes divergent members of the CRAL-TRIO domain
family. This family includes ECM25 that contains a
divergent CRAL-TRIO domain identified by Gallego and
colleagues.
Length = 149
Score = 76.6 bits (189), Expect = 4e-17
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 10/114 (8%)
Query: 15 YVLDKFVEQD----YSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTG 70
Y+L E+ + +V H G+T NKPS SWL Y+ R + KNLKA+Y+VHP+
Sbjct: 37 YLLSILSEELKPKGFVVVIDHTGVTR-NKPSWSWLKKLYKLLPRAFPKNLKAVYIVHPST 95
Query: 71 FIRVVLQIFK--AAISAKFGRKMIYINYLHELKSHLNLDQL--CIPRQVIEHDE 120
F++ L+ + F +K+IY++ L EL +++ QL + V+ +D
Sbjct: 96 FLKKFLKTLGRLFSSKKLFKKKVIYVSSLSELSEYIDPTQLPLELG-GVLSYDH 148
>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9:
GTPase-activator protein (GAP) domain for Rho-like
GTPases found in ARHGAP27 (also called CAMGAP1),
ARHGAP15, 12 and 9-like proteins; This subgroup of
ARHGAPs are multidomain proteins that contain RhoGAP,
PH, SH3 and WW domains. Most members that are studied
show GAP activity towards Rac1, some additionally show
activity towards Cdc42. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 187
Score = 76.7 bits (189), Expect = 9e-17
Identities = 48/164 (29%), Positives = 87/164 (53%), Gaps = 8/164 (4%)
Query: 151 FGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGE 210
FG L+ + V +R C++ + + L+ +G++R S ++A++++ + A ++ E
Sbjct: 1 FGCHLEALCQRENSTV-PKFVRLCIEAVEK-RGLDVDGIYRVSGNLAVIQKLRFAVDHDE 58
Query: 211 PILFHN----DIHLAAVLLKTFLRELDEPLLTYDLYDEIL-LFPTLNKDERSRYVKILIL 265
+ + DIH+ LK F REL EPL Y L+++ + + ++R VK LI
Sbjct: 59 KLDLDDSKWEDIHVITGALKLFFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIK 118
Query: 266 EKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLI 309
LP N+ LK + L ++ + + N+MT NLA+VF P L+
Sbjct: 119 -SLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPTLL 161
>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP21-like proteins. ArhGAP21 is a multi-domain
protein, containing RhoGAP, PH and PDZ domains, and is
believed to play a role in the organization of the
cell-cell junction complex. It has been shown to
function as a GAP of Cdc42 and RhoA, and to interact
with alpha-catenin and Arf6. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 196
Score = 77.1 bits (190), Expect = 1e-16
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 11/134 (8%)
Query: 184 LETEGLFRRSASVALVRQCQTACNNG-EPILFH----NDIHLAAVLLKTFLRELDEPLLT 238
LET G++R + A + Q N G I D+++ + LLK+F R+L EPL T
Sbjct: 34 LETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLLKSFFRKLPEPLFT 93
Query: 239 YDLYDEILLFPTLNK--DERSRYVKIL-ILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKM 295
+LY + F N+ D R ++ ++ LP +Y LK+++ L + D S++NKM
Sbjct: 94 NELYPD---FIEANRIEDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKM 150
Query: 296 TWNNLAVVFAPNLI 309
NLA+VF P L+
Sbjct: 151 EPRNLAIVFGPTLV 164
>gnl|CDD|239872 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain present in myosins IXB. Class IX myosins
contain a characteristic head domain, a neck domain and
a tail domain which contains a C6H2-zinc binding motif
and a Rho-GAP domain. Class IX myosins are
single-headed, processive myosins that are partly
cytoplasmic, and partly associated with membranes and
the actin cytoskeleton. Class IX myosins are implicated
in the regulation of neuronal morphogenesis and function
of sensory systems, like the inner ear. There are two
major isoforms, myosin IXA and IXB with several splice
variants, which are both expressed in developing neurons
Small GTPases cluster into distinct families, and all
act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 186
Score = 76.2 bits (187), Expect = 2e-16
Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 2/134 (1%)
Query: 184 LETEGLFRRSASVALVRQCQTACNNG-EPILFHN-DIHLAAVLLKTFLRELDEPLLTYDL 241
L TEG++R+S S +++ E + N IH LLK +LREL EPL+T+
Sbjct: 31 LYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQWLRELPEPLMTFAQ 90
Query: 242 YDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLA 301
Y++ L L + + +LE+LPT N+ L+ ++ L K+ D+N+M+ N LA
Sbjct: 91 YNDFLRAVELPEKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALA 150
Query: 302 VVFAPNLIWAPVNS 315
+VFAP L+ P +S
Sbjct: 151 IVFAPCLLRCPDSS 164
>gnl|CDD|239849 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP
domain and a C-terminal proline-rich region, and it is
active on both Cdc42 and Rac1 but not RhoA. CdGAP is
recruited to focal adhesions via the interaction with
the scaffold protein actopaxin (alpha-parvin). Small
GTPases cluster into distinct families, and all act as
molecular switches, active in their GTP-bound form but
inactive when GDP-bound. The Rho family of GTPases
activates effectors involved in a wide variety of
developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 195
Score = 75.2 bits (185), Expect = 5e-16
Identities = 47/169 (27%), Positives = 88/169 (52%), Gaps = 10/169 (5%)
Query: 150 QFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNG 209
FG L N+G DV +L+ C +++ + ++ G++R S + +++ + ++
Sbjct: 2 VFGCDLTEHLLNSGQDV-PQVLKSCTEFIEKHGIVD--GIYRLSGIASNIQRLRHEFDSE 58
Query: 210 -EPIL----FHNDIHLAAVLLKTFLRELDEPLLTYDLYDEIL-LFPTLNKDERSRYVKIL 263
P L + DIH + L K + REL PLLTY LY++ + +ER + +
Sbjct: 59 QIPDLTKDVYIQDIHSVSSLCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDV 118
Query: 264 ILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAP 312
I ++LP +Y L++++ LS++ + M NLA+V+APNL+ +
Sbjct: 119 I-QQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWAPNLLRSK 166
>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain present
in srGAPs. srGAPs are components of the intracellular
part of Slit-Robo signalling pathway that is important
for axon guidance and cell migration. srGAPs contain an
N-terminal FCH domain, a central RhoGAP domain and a
C-terminal SH3 domain; this SH3 domain interacts with
the intracellular proline-rich-tail of the Roundabout
receptor (Robo). This interaction with Robo then
activates the rhoGAP domain which in turn inhibits Cdc42
activity. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 188
Score = 74.8 bits (184), Expect = 5e-16
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 9/168 (5%)
Query: 152 GASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEP 211
G+ ++I+D+ G I ++ C+ +++ L+ +G+FR S S V + A GE
Sbjct: 5 GSLEEYIQDS--GQAIPLVVESCIRFINL-YGLQHQGIFRVSGSQVEVNDIKNAFERGED 61
Query: 212 ILFHN----DIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTL-NKDERSRYVKILILE 266
L + DI+ A +LK + R L+ PL + +++++ L N ER ++ ++
Sbjct: 62 PLADDQNDHDINSVAGVLKLYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILS- 120
Query: 267 KLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVN 314
LP V++Y+ FL+ + SD N M NLA+ F P L+ P
Sbjct: 121 TLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFGPTLMPVPEG 168
>gnl|CDD|239847 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain present in MgcRacGAP proteins. MgcRacGAP
plays an important dual role in cytokinesis: i) it is
part of centralspindlin-complex, together with the
mitotic kinesin MKLP1, which is critical for the
structure of the central spindle by promoting microtuble
bundling. ii) after phosphorylation by aurora B
MgcRacGAP becomes an effective regulator of RhoA and
plays an important role in the assembly of the
contractile ring and the initiation of cytokinesis.
MgcRacGAP-like proteins contain a N-terminal C1-like
domain, and a C-terminal RhoGAP domain. Small GTPases
cluster into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 193
Score = 74.3 bits (183), Expect = 1e-15
Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 4/145 (2%)
Query: 167 IAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGE--PILFHNDIHLAAVL 224
I ++ CV+ + L EGL+R S S V+ + G+ P L DIH+
Sbjct: 17 IPALIVHCVNEIEA-RGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGC 75
Query: 225 LKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLS 284
LK FLR L EPL+T+ L+ E + + ++ SR + +LP N L +++ L
Sbjct: 76 LKDFLRSLKEPLITFALWKEFMEAAEILDEDNSRAALYQAISELPQPNRDTLAFLILHLQ 135
Query: 285 KIEDRSDLNKMTWNNLAVVFAPNLI 309
++ +S KM NNLA VF P ++
Sbjct: 136 RVA-QSPECKMDINNLARVFGPTIV 159
>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain present
in RalBP1 proteins, also known as RLIP, RLIP76 or
cytocentrin. RalBP1 plays an important role in
endocytosis during interphase. During mitosis, RalBP1
transiently associates with the centromere and has been
shown to play an essential role in the proper assembly
of the mitotic apparatus. RalBP1 is an effector of the
Ral GTPase which itself is an effector of Ras. RalBP1
contains a RhoGAP domain, which shows weak activity
towards Rac1 and Cdc42, but not towards Ral, and a Ral
effector domain binding motif. Small GTPases cluster
into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 182
Score = 72.5 bits (178), Expect = 3e-15
Identities = 50/166 (30%), Positives = 89/166 (53%), Gaps = 13/166 (7%)
Query: 151 FGASL----QHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTAC 206
FGASL + + ++G D+ R+C+DY+ + ++ EG+++ S + V + + A
Sbjct: 1 FGASLSLAVERSRCHDGIDLPLVF-RECIDYV-EKHGMKCEGIYKVSGIKSKVDELKAAY 58
Query: 207 NNGE-PILFHNDIHLAAVLLKTFLRELDEPLLTYDL---YDEILLFPTLNKDERSRYVKI 262
N E P L + A LLK +LREL EPLLT +L ++E PT ER + ++
Sbjct: 59 NRRESPNLEEYEPPTVASLLKQYLRELPEPLLTKELMPRFEEACGRPTEA--EREQELQR 116
Query: 263 LILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNL 308
L L++LP N +L +++ + + + KM N+++V +P +
Sbjct: 117 L-LKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSPTV 161
>gnl|CDD|239856 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP18-like proteins. The function of ArhGAP18 is
unknown. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 216
Score = 72.4 bits (178), Expect = 6e-15
Identities = 47/130 (36%), Positives = 67/130 (51%), Gaps = 6/130 (4%)
Query: 184 LETEGLFRRSASVALVRQ-CQ---TACNNGEPILFHNDIHLAAVLLKTFLRELDEPLLTY 239
LETEG+ R S V+ CQ G + H AA LLK F+REL +PLLT
Sbjct: 38 LETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAASLLKLFIRELPQPLLTV 97
Query: 240 DLYDEILLFPTL-NKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWN 298
+ L +K ++ + + +L+L LP N LK ++ FL K+ D + NKM
Sbjct: 98 EYLPAFYSVQGLPSKKDQLQALNLLVL-LLPEANRDTLKALLEFLQKVVDHEEKNKMNLW 156
Query: 299 NLAVVFAPNL 308
N+A++ APNL
Sbjct: 157 NVAMIMAPNL 166
>gnl|CDD|239840 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain of DLC1-like
proteins. DLC1 shows in vitro GAP activity towards RhoA
and CDC42. Beside its C-terminal GAP domain, DLC1 also
contains a SAM (sterile alpha motif) and a START
(StAR-related lipid transfer action) domain. DLC1 has
tumor suppressor activity in cell culture. Small GTPases
cluster into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 220
Score = 72.5 bits (178), Expect = 6e-15
Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 7/142 (4%)
Query: 171 LRQCVDYLSQPDALETEGLFRRS---ASVALVRQCQTACNNGEPILFHNDIHLAAVLLKT 227
++Q + +L +AL+ GLFR+S + + +R + + A +LK
Sbjct: 24 IQQAMRWLRN-NALDQVGLFRKSGVKSRIQKLRS-MIESSTDNVNYDGQQAYDVADMLKQ 81
Query: 228 FLRELDEPLLTYDLYDE-ILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKI 286
+ R+L EPLLT L + I +F + K++R V+ IL LP +N VL+ ++ FLS +
Sbjct: 82 YFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAIL-LLPDENREVLQTLLYFLSDV 140
Query: 287 EDRSDLNKMTWNNLAVVFAPNL 308
S N+MT NLAV AP+L
Sbjct: 141 AANSQENQMTATNLAVCLAPSL 162
>gnl|CDD|239874 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally
cloned as an interaction partner of PTPL1, an
intracellular protein-tyrosine phosphatase. PARG1
interacts with Rap2, also a member of the Ras small
GTPase superfamily whose exact function is unknown, and
shows strong preference for Rho. Small GTPases cluster
into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 211
Score = 71.0 bits (174), Expect = 2e-14
Identities = 49/183 (26%), Positives = 98/183 (53%), Gaps = 26/183 (14%)
Query: 165 DVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHNDI--HLAA 222
D I I+++C + + AL +G++R + + + V + A NG+ ++ +++ H +
Sbjct: 14 DGIPFIIKKCTSEI-ESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDIS 72
Query: 223 VLLKTFLRELDEPLLTYDLYDEI--LLFPTLNKDERSRYVK---------------ILI- 264
+LK +LR+L EPL+ + LY+E L + + +E K IL+
Sbjct: 73 NVLKLYLRQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLK 132
Query: 265 ----LEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWA-PVNSQLSL 319
L +LP NY L++++ L ++ ++++ NKM+ +NL ++F P LI P ++ +SL
Sbjct: 133 SKDLLRQLPAPNYNTLQFLIVHLHRVSEQAEENKMSASNLGIIFGPTLIRPRPTDATVSL 192
Query: 320 SAI 322
S++
Sbjct: 193 SSL 195
>gnl|CDD|239839 cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activator protein (GAP)
domain for Rho-like GTPases found in GRAF (GTPase
regulator associated with focal adhesion kinase); Graf
is a multi-domain protein, containing SH3 and PH
domains, that binds focal adhesion kinase and influences
cytoskeletal changes mediated by Rho proteins. Graf
exhibits GAP activity toward RhoA and Cdc42, but only
weakly activates Rac1. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 203
Score = 70.1 bits (172), Expect = 3e-14
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 15/151 (9%)
Query: 170 ILRQCVDYLSQPDALETEGLFRRSAS-------VALVRQCQTACNNGEPILFHN---DIH 219
+R+C++ + + + +GL+R ++L +T+ + N +I
Sbjct: 31 FVRKCIEAV-ETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGD--VDLDNSEWEIK 87
Query: 220 LAAVLLKTFLRELDEPLLTYDLYDE-ILLFPTLNKDERSRYVKILILEKLPTDNYTVLKY 278
LKT+LR L EPL+TY+L+++ I + N + R + L+ KLP N +L+
Sbjct: 88 TITSALKTYLRNLPEPLMTYELHNDFINAAKSENLESRVNAIHSLV-HKLPEKNREMLEL 146
Query: 279 IVTFLSKIEDRSDLNKMTWNNLAVVFAPNLI 309
++ L+ + D S N MT +NL VVF P L+
Sbjct: 147 LIKHLTNVSDHSKKNLMTVSNLGVVFGPTLL 177
>gnl|CDD|239854 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein
(GAP) domain for Rho-like GTPases found in KIAA1688-like
proteins; KIAA1688 is a protein of unknown function that
contains a RhoGAP domain and a myosin tail homology 4
(MyTH4) domain. Small GTPases cluster into distinct
families, and all act as molecular switches, active in
their GTP-bound form but inactive when GDP-bound. The
Rho family of GTPases activates effectors involved in a
wide variety of developmental processes, including
regulation of cytoskeleton formation, cell proliferation
and the JNK signaling pathway. GTPases generally have a
low intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 187
Score = 67.8 bits (166), Expect = 2e-13
Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 13/166 (7%)
Query: 151 FGASLQHI----KDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTAC 206
FG+SL+ I K+ + IL + + +TEG+FR + V + +
Sbjct: 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRV 60
Query: 207 NNGE-PILFHNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILIL 265
+ + P+ D H+ A LLK +LREL+EPL+ LY + + ++ + V+ I+
Sbjct: 61 DQWDYPLSGLEDPHVPASLLKLWLRELEEPLIPDALYQQCI----SASEDPDKAVE--IV 114
Query: 266 EKLPTDNYTVLKYIVTFLSK--IEDRSDLNKMTWNNLAVVFAPNLI 309
+KLP N VL Y++ FL + KM +NLA+VFAPN++
Sbjct: 115 QKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFAPNIL 160
>gnl|CDD|239845 cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain present
in OCRL1-like proteins. OCRL1 (oculocerebrorenal
syndrome of Lowe 1)-like proteins contain two conserved
domains: a central inositol polyphosphate 5-phosphatase
domain and a C-terminal Rho GAP domain, this GAP domain
lacks the catalytic residue and therefore maybe
inactive. OCRL-like proteins are type II inositol
polyphosphate 5-phosphatases that can hydrolyze lipid
PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and
Ins(1,3,4,5)P4, but their individual specificities vary.
The functionality of the RhoGAP domain is still unclear.
Small GTPases cluster into distinct families, and all
act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 220
Score = 67.4 bits (165), Expect = 4e-13
Identities = 48/202 (23%), Positives = 83/202 (41%), Gaps = 17/202 (8%)
Query: 128 KGSVLPTPLTSSVTNLTYSP---TQQFGASLQHIKDNNGGDVIAPILR---QCVDYL--- 178
G LP+ SS+ L P + L+ + + +V I + + VDYL
Sbjct: 5 TGVYLPSCFGSSLETLIRLPDPGIRNLIDQLELGDNPDYSEVPLSIPKEIWRLVDYLYTR 64
Query: 179 --SQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHNDIHLAAVLLKTFLRELDEPL 236
+Q E GL S L+ + + A + G P A L FL L +P+
Sbjct: 65 GLAQEGLFEEPGL--PSEPGELLAEIRDALDTGSPFNSPGSAESVAEALLLFLESLPDPI 122
Query: 237 LTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMT 296
+ Y LY+ +L N++++ + ++I LP + V Y+ +FL ++ S +
Sbjct: 123 IPYSLYERLLEAVANNEEDKRQVIRI----SLPPVHRNVFVYLCSFLRELLSESADRGLD 178
Query: 297 WNNLAVVFAPNLIWAPVNSQLS 318
N LA +F L+ P +
Sbjct: 179 ENTLATIFGRVLLRDPPRAGGK 200
>gnl|CDD|239862 cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
fungal LRG1-like proteins. Yeast Lrg1p is required for
efficient cell fusion, and mother-daughter cell
separation, possibly through acting as a RhoGAP
specifically regulating 1,3-beta-glucan synthesis. Small
GTPases cluster into distinct families, and all act as
molecular switches, active in their GTP-bound form but
inactive when GDP-bound. The Rho family of GTPases
activates effectors involved in a wide variety of
developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 213
Score = 66.6 bits (163), Expect = 7e-13
Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 23/180 (12%)
Query: 151 FGASLQHIKDNNGGDV----------IAPILRQCVDYLSQPDALETEGLFRRSASVALVR 200
FG L+ + + G D I ++ + + Q D + EG+FR++ ++ ++
Sbjct: 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMD-MSVEGVFRKNGNIRRLK 59
Query: 201 QCQTACNNG----EPILFHNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDER 256
+ + + N + LAA LLK FLREL +PLLT+ LY + + +E
Sbjct: 60 ELTEEIDKNPTEVPDLSKENPVQLAA-LLKKFLRELPDPLLTFKLYRLWISSQKIEDEEE 118
Query: 257 SRYVKILILEKLPTDNYTVLKYIVTFL------SKIEDRSDLNKMTWNNLAVVFAPNLIW 310
+ V L+ LP + ++ + +FL S I++ + +KM +NLA V PN+++
Sbjct: 119 RKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETG-SKMDIHNLATVITPNILY 177
>gnl|CDD|239871 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain present in myosins IXA. Class IX myosins
contain a characteristic head domain, a neck domain and
a tail domain which contains a C6H2-zinc binding motif
and a Rho-GAP domain. Class IX myosins are
single-headed, processive myosins that are partly
cytoplasmic, and partly associated with membranes and
the actin cytoskeleton. Class IX myosins are implicated
in the regulation of neuronal morphogenesis and function
of sensory systems, like the inner ear. There are two
major isoforms, myosin IXA and IXB with several splice
variants, which are both expressed in developing
neurons. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 186
Score = 64.6 bits (157), Expect = 2e-12
Identities = 41/164 (25%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Query: 151 FGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGE 210
FG L + + + ++ + ++Y+ L TEG++R+S S +++ + +
Sbjct: 1 FGVELSRLTSEDRS--VPLVVEKLINYIEM-HGLYTEGIYRKSGSTNKIKELRQGLDTDA 57
Query: 211 PILFHND--IHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKL 268
+ +D IH+ A + K +LR+L PL+T++LY+E L L + + ++++L
Sbjct: 58 NSVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQL 117
Query: 269 PTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAP 312
+ L+ ++ L +I + + N+M+ N LA+VFAP ++ P
Sbjct: 118 SRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILRCP 161
>gnl|CDD|239852 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain of Bcr
(breakpoint cluster region protein)-like proteins. Bcr
is a multidomain protein with a variety of enzymatic
functions. It contains a RhoGAP and a Rho GEF domain, a
Ser/Thr kinase domain, an N-terminal oligomerization
domain, and a C-terminal PDZ binding domain, in addition
to PH and C2 domains. Bcr is a negative regulator of:
i) RacGTPase, via the Rho GAP domain, ii) the
Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras
binding protein AF-6, and iii) the Wnt signaling pathway
through binding beta-catenin. Bcr can form a complex
with beta-catenin and Tcf1. The Wnt signaling pathway
is involved in cell proliferation, differentiation, and
cell renewal. Bcr was discovered as a fusion partner of
Abl. The Bcr-Abl fusion is characteristic for a large
majority of chronic myelogenous leukemias (CML). Small
GTPases cluster into distinct families, and all act as
molecular switches, active in their GTP-bound form but
inactive when GDP-bound. The Rho family of GTPases
activates effectors involved in a wide variety of
developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 196
Score = 64.2 bits (156), Expect = 4e-12
Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 5/148 (3%)
Query: 170 ILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTA--CNNGEPILFHNDIHLAAV--LL 225
I+RQCV+ + + +E G++R S ++ + A NN + + +++ + A+ L
Sbjct: 19 IVRQCVEEVER-RGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTL 77
Query: 226 KTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSK 285
K + REL EPL T +LY L+ + +L LP N +++ L +
Sbjct: 78 KLYFRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKR 137
Query: 286 IEDRSDLNKMTWNNLAVVFAPNLIWAPV 313
+ +R ++NKM+ +NLA VF P L+
Sbjct: 138 VAEREEVNKMSLHNLATVFGPTLLRPSE 165
>gnl|CDD|239861 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of fungal SAC7 and BAG7-like proteins.
Both proteins are GTPase activating proteins of Rho1,
but differ functionally in vivo: SAC7, but not BAG7, is
involved in the control of Rho1-mediated activation of
the PKC-MPK1 pathway. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 225
Score = 64.4 bits (157), Expect = 5e-12
Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 33/174 (18%)
Query: 166 VIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACN---------NGEPILFHN 216
I ++ +C YL + +A E EG+FR + S +R+ Q + + +
Sbjct: 31 YIPVVVAKCGVYLKE-NATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSFDWDGY---- 85
Query: 217 DIHLAAVLLKTFLRELDEPLLTYDLYDE----ILLFP--------------TLNKDERSR 258
+H AA +L+ +L L EPL+ DLY+E + P + D+ +
Sbjct: 86 TVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIK 145
Query: 259 YVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAP 312
+ LI LP N +L Y++ L+ SD N MT +NLA +F P ++ P
Sbjct: 146 EYRDLITR-LPNLNRQLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHP 198
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain. Found in
secretory proteins, such as S. cerevisiae
phosphatidylinositol transfer protein (Sec14p), and in
lipid regulated proteins such as RhoGAPs, RhoGEFs and
neurofibromin (NF1). SEC14 domain of Dbl is known to
associate with G protein beta/gamma subunits.
Length = 157
Score = 62.4 bits (152), Expect = 7e-12
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 15 YVLDKFVEQDYSLVYFHY------GLTSKNK-PSLSWLWSAYRAFDRKYKKNLKALYLVH 67
Y L+K +++D V GL+ + P S L + Y + LKA+Y+++
Sbjct: 48 YTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLLPDPSLLKKILKILQDNYPERLKAVYIIN 107
Query: 68 PTGFIRVVLQIFKAAISAKFGRKMIYI-NYLHELKSHLNLDQLCIP 112
P F +V+ +I K +S K +K++++ + EL +++ +QL
Sbjct: 108 PPWFFKVLWKIVKPFLSEKTRKKIVFLGSDKEELLKYIDKEQLPEE 153
>gnl|CDD|239837 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of chimaerins. Chimaerins are a family
of phorbolester- and diacylglycerol-responsive GAPs
specific for the Rho-like GTPase Rac. Chimaerins exist
in two alternative splice forms that each contain a
C-terminal GAP domain, and a central C1 domain which
binds phorbol esters, inducing a conformational change
that activates the protein; one splice form is lacking
the N-terminal Src homology-2 (SH2) domain. Small
GTPases cluster into distinct families, and all act as
molecular switches, active in their GTP-bound form but
inactive when GDP-bound. The Rho family of GTPases
activates effectors involved in a wide variety of
developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 194
Score = 62.9 bits (153), Expect = 8e-12
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 170 ILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACN-NGE----PILFHNDIHLAAVL 224
++ C+ + + L++EGL+R S + + A + +GE + DI++
Sbjct: 19 VVDMCIREI-EARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGA 77
Query: 225 LKTFLRELDEPLLTYDLYDE-ILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFL 283
LK + R+L P++TYD Y + I N DER V L LP +Y L+Y++ L
Sbjct: 78 LKLYFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVH-EALMLLPPAHYETLRYLMEHL 136
Query: 284 SKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLS 318
++ NKM NL +VF P L+ P +S L+
Sbjct: 137 KRVTLHEKDNKMNAENLGIVFGPTLMRPPEDSALT 171
>gnl|CDD|239844 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain present in
SYD-1_like proteins. Syd-1, first identified and best
studied in C.elegans, has been shown to play an
important role in neuronal development by specifying
axonal properties. Small GTPases cluster into distinct
families, and all act as molecular switches, active in
their GTP-bound form but inactive when GDP-bound. The
Rho family of GTPases activates effectors involved in a
wide variety of developmental processes, including
regulation of cytoskeleton formation, cell proliferation
and the JNK signaling pathway. GTPases generally have a
low intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 207
Score = 60.6 bits (147), Expect = 8e-11
Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 151 FGASLQHIKDNNGGDVIAPI-LRQCVDYLSQPDALETEGLFRRSASVALVRQCQTA---- 205
FG L + + G PI L++CV + + L+ GL+R S A ++ + A
Sbjct: 1 FGVPLSRLVEREGESRDVPIVLQKCVQEI-ERRGLDVIGLYRLCGSAAKKKELRDAFERN 59
Query: 206 ----CNNGEPILFHNDIHLAAVLLKTFLRELDEPLLTYDLYD---EILLFPTLNKDERSR 258
+ E DI++ +LK +LREL EPL+T LY+ E L N + +
Sbjct: 60 SAAVELSEELY---PDINVITGVLKDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNT 116
Query: 259 YVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLI 309
++ + I++ LP L ++ LS + S+ NKMT NLAV F P L+
Sbjct: 117 HLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAVCFGPVLM 167
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S. cerevisiae
phosphatidylinositol transfer protein (Sec14p). Domain
in homologues of a S. cerevisiae phosphatidylinositol
transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and
the RasGAP, neurofibromin (NF1). Lipid-binding domain.
The SEC14 domain of Dbl is known to associate with G
protein beta/gamma subunits.
Length = 158
Score = 59.2 bits (144), Expect = 9e-11
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 15 YVLDKFVEQ---DYSLVYFHYGLTSKNKPSLSWLWSAYRA----FDRKYKKNLKALYLVH 67
YVL+K +++ + F K + S R Y + L +Y+++
Sbjct: 46 YVLEKILQEEKKTGGIEGFTVIFDLKGLSMSNPDLSVLRKILKILQDHYPERLGKVYIIN 105
Query: 68 PTGFIRVVLQIFKAAISAKFGRK--MIYINYLHELKSHLNLDQL 109
P F RV+ +I K + K K + + EL +++ +QL
Sbjct: 106 PPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDKEQL 149
>gnl|CDD|239853 cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain present in the
p85 isoforms of the regulatory subunit of the class IA
PI3K (phosphatidylinositol 3'-kinase). This domain is
also called Bcr (breakpoint cluster region protein)
homology (BH) domain. Class IA PI3Ks are heterodimers,
containing a regulatory subunit (p85) and a catalytic
subunit (p110) and are activated by growth factor
receptor tyrosine kinases (RTKs); this activation is
mediated by the p85 subunit. p85 isoforms, alpha and
beta, contain a C-terminal p110-binding domain flanked
by two SH2 domains, an N-terminal SH3 domain, and a
RhoGAP domain flanked by two proline-rich regions. Small
GTPases cluster into distinct families, and all act as
molecular switches, active in their GTP-bound form but
inactive when GDP-bound. The Rho family of GTPases
activates effectors involved in a wide variety of
developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 200
Score = 44.5 bits (105), Expect = 2e-05
Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 7/159 (4%)
Query: 165 DVIAPILRQCVDYLSQPDALETEGLFRR--SASVALVRQCQTACNNGEPILFHNDIHLAA 222
DV P+L + V+ + + LE+ L+R S+S+ +RQ C+ L D+ A
Sbjct: 13 DVAPPLLIKLVEAIEK-KGLESSTLYRTQSSSSLTELRQI-LDCDAASVDLEQFDVAALA 70
Query: 223 VLLKTFLRELDEPLLTYDLYDEIL--LFPTLNKDERSRYVKILILE-KLPTDNYTVLKYI 279
LK +L +L P++ +Y E++ + DE ++ ++ LI LP + L+Y+
Sbjct: 71 DALKRYLLDLPNPVIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYL 130
Query: 280 VTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLS 318
+ ++ S N ++ LA +F+P L S S
Sbjct: 131 LKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQPASSDS 169
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain.
Length = 152
Score = 33.4 bits (77), Expect = 0.065
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 60 LKALYLVHPTGFIRVVLQIFKAAISAKFGRKMIYIN--YLHELKSHLNLDQL 109
L + +V+ V+ ++ K + K K+ + L EL ++ +QL
Sbjct: 94 LGKILIVNAPWIFNVIWKLIKPFLDPKTREKIHFHKNSNLEELLKYIPPEQL 145
>gnl|CDD|227284 COG4948, COG4948, L-alanine-DL-glutamate epimerase and related
enzymes of enolase superfamily [Cell envelope
biogenesis, outer membrane / General function prediction
only].
Length = 372
Score = 31.2 bits (71), Expect = 0.70
Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 165 DVIAPILRQCVDYLSQPDALETEGL--FRRSASVALVRQCQTACNNGEPILFHNDIHLAA 222
D + VD + QPD G+ + A++A + PI +HLAA
Sbjct: 253 DFRRLLEAGAVDIV-QPDLARVGGITEALKIAALAEGFGVMVGPHVEGPISLAAALHLAA 311
Query: 223 VLLKTFLRELDEPLLTYDLYDEILLFP 249
L +L+ PL D L
Sbjct: 312 AL--PNFGDLEGPLALADDDWYDDLVE 336
>gnl|CDD|211965 TIGR04242, nodulat_NodC, chitooligosaccharide synthase NodC.
Members of this family are NodC, an
N-acetylglucosaminyltransferase involved in the
production of nodulation factors through which rhizobia
establish symbioses with leguminous plants.
Length = 395
Score = 28.9 bits (65), Expect = 3.8
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 189 LFRRSASVALVRQCQTACNNGEPILFHNDIHLAAVLLKTFLR 230
++RRSA ++L+ Q +T G+P F D HL ++LK R
Sbjct: 212 MYRRSALLSLLDQYETQLFRGKPSDFGEDRHLTILMLKAGFR 253
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.405
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,414,882
Number of extensions: 1684971
Number of successful extensions: 1393
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1324
Number of HSP's successfully gapped: 57
Length of query: 342
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 244
Effective length of database: 6,590,910
Effective search space: 1608182040
Effective search space used: 1608182040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)