RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12161
(342 letters)
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition
state, gene regulation/signaling protein complex; HET:
GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A
2ngr_B*
Length = 242
Score = 233 bits (597), Expect = 2e-76
Identities = 103/241 (42%), Positives = 151/241 (62%), Gaps = 10/241 (4%)
Query: 103 HLNLDQLCIPRQVIEHDERLTAKLSKGSVLPTPLTSSVTNLTYSPTQQFGASLQ-HIKDN 161
H+ L+QL IPRQV+++D+ L + + P P+ P QQFG SLQ + N
Sbjct: 1 HVKLEQLGIPRQVLKYDDFLKSTQKSPATAPKPMPPR----PPLPNQQFGVSLQHLQEKN 56
Query: 162 NGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILF--HNDIH 219
+ I +LR+ V YL AL TEG+FRRSA+ +VR+ Q N G P+ F +N++H
Sbjct: 57 PEQEPIPIVLRETVAYLQA-HALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELH 115
Query: 220 LAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYI 279
L AV+LKTFLREL EPLLT+DLY ++ F +++ +R ++ + LP +NY VL+++
Sbjct: 116 LPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL-QTLPEENYQVLRFL 174
Query: 280 VTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSI 339
FL +I SD NKMT NLAVVF PNL+WA ++ ++L AI+PIN+F F+ ++ +
Sbjct: 175 TAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAK-DAAITLKAINPINTFTKFLLDHQGEL 233
Query: 340 F 340
F
Sbjct: 234 F 234
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase,
transition state, GAP; HET: GDP; 1.65A {Homo sapiens}
SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Length = 198
Score = 209 bits (535), Expect = 1e-67
Identities = 91/197 (46%), Positives = 130/197 (65%), Gaps = 6/197 (3%)
Query: 147 PTQQFGASLQHI-KDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTA 205
P QQFG SLQH+ + N + I +LR+ V YL AL TEG+FRRSA+ +VR+ Q
Sbjct: 5 PNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQA-HALTTEGIFRRSANTQVVREVQQK 63
Query: 206 CNNGEPILF--HNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKIL 263
N G P+ F +N +HL AV+LKTFLREL EPLLT+DLY ++ F +++ +R +
Sbjct: 64 YNMGLPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQV 123
Query: 264 ILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAIS 323
+ + LP +NY VL+++ FL +I SD NKMT NLAVVF PNL+WA ++ ++L AI+
Sbjct: 124 L-QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAK-DAAITLKAIN 181
Query: 324 PINSFVYFMFNNYHSIF 340
PIN+F F+ ++ +F
Sbjct: 182 PINTFTKFLLDHQGELF 198
>3msx_B RHO GTPase-activating protein 20; protein-proten complex,
transition state, protein BI; HET: GDP; 1.65A {Homo
sapiens}
Length = 201
Score = 199 bits (509), Expect = 1e-63
Identities = 60/198 (30%), Positives = 101/198 (51%), Gaps = 9/198 (4%)
Query: 147 PTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTAC 206
P Q FG SL +I +N+ + + + +L+Q T+G+FR+SA+V R+ +
Sbjct: 9 PGQLFGISLPNICENDN---LPKPVLDMLFFLNQ-KGPLTKGIFRQSANVKSCRELKEKL 64
Query: 207 NNGEPILFHN-DIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTL-NKDERSRYVKILI 264
N+G + I + A +LK FLR + + + DLYD + N +E+ V+ +
Sbjct: 65 NSGVEVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQ-RL 123
Query: 265 LEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPV--NSQLSLSAI 322
L++LP N +L+Y+ L IE S N+MT NLAV AP+++W P + +L
Sbjct: 124 LDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSILWPPASSSPELENEFT 183
Query: 323 SPINSFVYFMFNNYHSIF 340
++ + F+ N IF
Sbjct: 184 KKVSLLIQFLIENCLRIF 201
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics
consortium, GTPase activation, phosphoprotein,
polymorphism hydrolase activator, SGC; 2.30A {Homo
sapiens}
Length = 271
Score = 187 bits (477), Expect = 7e-58
Identities = 64/242 (26%), Positives = 99/242 (40%), Gaps = 9/242 (3%)
Query: 107 DQLCIPRQVIEHDERLTAKLSKGSVLPTPLTSSVTNLTYSPTQQFGASLQHIKDNNGGDV 166
DQ + +++H KG T T + FG + + +
Sbjct: 21 DQRLVRLALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVPEY 80
Query: 167 --IAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHNDIHLAAVL 224
I L L + TEGLFR+S SV ++ + ++GE L A L
Sbjct: 81 GHIPSFLVDACTSLED--HIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGL 138
Query: 225 LKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLS 284
LK F REL EP+L DL++ +L L +E+++ L+ L VL+Y FL
Sbjct: 139 LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATL-LLSCLLADHTVHVLRYFFNFLR 197
Query: 285 KIEDRSDLNKMTWNNLAVVFAPNLIWAPVN----SQLSLSAISPINSFVYFMFNNYHSIF 340
+ RS NKM +NLAV+FAPNL+ S + + + V + + I
Sbjct: 198 NVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTLIDYASDIG 257
Query: 341 II 342
+
Sbjct: 258 RV 259
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics
consortium, GTPase-activating protein, SGC, alternative
splicing, anti-oncogene; 2.80A {Homo sapiens}
Length = 246
Score = 184 bits (468), Expect = 8e-57
Identities = 44/228 (19%), Positives = 100/228 (43%), Gaps = 8/228 (3%)
Query: 117 EHDERLTAKLSKGSVLPTPLTSSVTNLTYSPTQQFGASLQHIKDNNGGDVIAPILRQCVD 176
+ L + + P P + FG L + I + +C++
Sbjct: 20 PRRRNILRSLRRNTKKPKPKPRPSITKATWESNYFGVPLTTVVTPEKP--IPIFIERCIE 77
Query: 177 YLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHN---DIHLAAVLLKTFLRELD 233
Y+ L TEG++R S + + + Q + + ++ A +K+F EL
Sbjct: 78 YIEA-TGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELP 136
Query: 234 EPLLTYDLYDEILLFPTL-NKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDL 292
+PL+ Y++ +++ + +++++ +K ++ +K P +N+ V KY+++ L+K+ + +
Sbjct: 137 DPLVPYNMQIDLVEAHKINDREQKLHALKEVL-KKFPKENHEVFKYVISHLNKVSHNNKV 195
Query: 293 NKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIF 340
N MT NL++ F P L+ ++ +L+A + + F
Sbjct: 196 NLMTSENLSICFWPTLMRPDFSTMDALTATRTYQTIIELFIQQCPFFF 243
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein,
GTPase-activating protein for RHO family members,
structural genomics, NPPSFA; NMR {Homo sapiens} PDB:
2ee5_A
Length = 209
Score = 165 bits (421), Expect = 3e-50
Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 8/201 (3%)
Query: 144 TYSPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQ 203
+ + FG LQ + I + +CV+++ L TEGL+R S + Q
Sbjct: 6 SGWESNYFGMPLQDLV--TAEKPIPLFVEKCVEFIED-TGLCTEGLYRVSGNKTDQDNIQ 62
Query: 204 TACNNGEPILFHN---DIHLAAVLLKTFLRELDEPLLTYDLYDE-ILLFPTLNKDERSRY 259
+ I + ++ A LK F +L +PL+ Y L+ E + +K ER
Sbjct: 63 KQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHA 122
Query: 260 VKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSL 319
+K ++ +K NY V +Y++T L+++ + +N MT +NL++ F P L+ ++ L
Sbjct: 123 LKEIV-KKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDFENREFL 181
Query: 320 SAISPINSFVYFMFNNYHSIF 340
S S V F
Sbjct: 182 STTKIHQSVVETFIQQCQFFF 202
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural
genomics consortium, signaling protein; 2.25A {Homo
sapiens}
Length = 214
Score = 157 bits (399), Expect = 5e-47
Identities = 52/201 (25%), Positives = 94/201 (46%), Gaps = 8/201 (3%)
Query: 145 YSPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQT 204
Q FG+ L + + V ++QC++ + + L+ +G++R S ++A +++ +
Sbjct: 14 LIKDQIFGSHLHKVCERENSTV-PWFVKQCIEAVEK-RGLDVDGIYRVSGNLATIQKLRF 71
Query: 205 ACNNGEPILFHN----DIHLAAVLLKTFLRELDEPLLTYDLYDE-ILLFPTLNKDERSRY 259
N E + + DIH+ LK F REL EPL Y +++ + + + R
Sbjct: 72 IVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEA 131
Query: 260 VKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSL 319
VK L+ +KLP N +K + L+KI ++ N M+ +L +VF P L+ A +
Sbjct: 132 VKSLV-QKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLLRAENETGNMA 190
Query: 320 SAISPINSFVYFMFNNYHSIF 340
+ N M + Y IF
Sbjct: 191 IHMVYQNQIAELMLSEYSKIF 211
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1,
RAB gtpases, APPL1, endocytic PATH golgi complex,
hydrolase-protein binding complex; 2.30A {Homo sapiens}
PDB: 2qv2_A
Length = 366
Score = 159 bits (403), Expect = 6e-46
Identities = 53/295 (17%), Positives = 103/295 (34%), Gaps = 42/295 (14%)
Query: 38 NKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKAAISAKFGRKMIYINYL 97
+K S++ L S + ++ + ++H L I + + FG + + +
Sbjct: 104 SKDSVTILNSG--------EDKIEDILVLHLDRGKDYFLTISGNYLPSCFGTSLEALCRM 155
Query: 98 HELKSHLNLDQLCIPRQVIEHDERLTAKLSKGSVLPTPLTSSVTNLTYSPTQQFGASLQH 157
+ + +L I+ +E + K + PL +
Sbjct: 156 KRPIREVPVTKL------IDLEEDSFLEKEKSLLQMVPLDEGASE--------------- 194
Query: 158 IKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHND 217
+ + VD+L A E LF+ ++Q + P
Sbjct: 195 -----RPLQVPKEIWLLVDHL-FKYACHQEDLFQTPGMQEELQQIIDCLDTSIPETIPGS 248
Query: 218 IHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLK 277
H A L FL L EP++ Y+LY L + R ++ +LP + V +
Sbjct: 249 NHSVAEALLIFLEALPEPVICYELYQRCL--DSAYDPRICRQ----VISQLPRCHRNVFR 302
Query: 278 YIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFM 332
Y++ FL ++ S+ N + N +A +F L+ P N + S + F+
Sbjct: 303 YLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPPNLM-ARQTPSDRQRAIQFL 356
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH
domain, signaling protein; 2.40A {Gallus gallus} SCOP:
a.116.1.1
Length = 231
Score = 154 bits (391), Expect = 2e-45
Identities = 43/200 (21%), Positives = 83/200 (41%), Gaps = 12/200 (6%)
Query: 151 FGASLQHIKDNNG--GDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNN 208
+ ++ + + + I+++C+ + + +GL+R + V++ + +
Sbjct: 19 YNSNKDNQSEGTAQLDSIGFSIIKKCIHAVET-RGINEQGLYRIVGVNSRVQKLLSILMD 77
Query: 209 GE-------PILFHNDIHLAAVLLKTFLRELDEPLLTYDLYDE-ILLFPTLNKDERSRYV 260
+ I +I LKT+LR L PL+ Y I N++ R +
Sbjct: 78 PKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEI 137
Query: 261 KILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLS 320
L+ +LP N +L ++ L+K+ D N MT NL VVF P L+ + ++
Sbjct: 138 HSLV-HRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETVAAIM 196
Query: 321 AISPINSFVYFMFNNYHSIF 340
I N + + N+ IF
Sbjct: 197 DIKFQNIVIEILIENHEKIF 216
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium,
GTPase activation, SGC, alternative splicing, cytoplasm,
phosphoprotein; 2.30A {Homo sapiens}
Length = 228
Score = 153 bits (388), Expect = 3e-45
Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 6/173 (3%)
Query: 151 FGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGE 210
FG L G + ++Q + YL L+ GLFR+S + ++ +
Sbjct: 21 FGVPLTVNVQRTGQP-LPQSIQQAMRYLRN-HCLDQVGLFRKSGVKSRIQALRQMNEGAI 78
Query: 211 PI--LFHNDIHLAAVLLKTFLRELDEPLLTYDLYDE-ILLFPTLNKDERSRYVKILILEK 267
+ A +LK + R+L EPL+T L + + ++ + KD+R + +K I+
Sbjct: 79 DCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIM-L 137
Query: 268 LPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLS 320
LP +N VL+ ++ FLS + N+MT NLAV AP+L + + S
Sbjct: 138 LPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLFHLNTLKRENSS 190
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase,
tpase activating protein, CDC42, phosphoinositide
3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP:
a.116.1.1
Length = 216
Score = 150 bits (381), Expect = 3e-44
Identities = 39/200 (19%), Positives = 81/200 (40%), Gaps = 9/200 (4%)
Query: 146 SPTQQFGASLQHIKDNNGGDVIAP-ILRQCVDYLSQPDALETEGLFRRSASVALVRQCQT 204
+ +Q +L + + IAP +L + V+ + + LE L+R +S L Q
Sbjct: 3 ADVEQQALTLPDLAEQFAPPDIAPPLLIKLVEAIEKK-GLECSTLYRTQSSSNLAELRQL 61
Query: 205 ACNNGEPI-LFHNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLF--PTLNKDERSRYVK 261
+ + L D+H+ A K +L +L P++ +Y E++ + +E + +K
Sbjct: 62 LDCDTPSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLK 121
Query: 262 ILI-LEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLS 320
LI +P + L+Y++ K+ S N + L+ +F+P L S
Sbjct: 122 KLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFS---AASSD 178
Query: 321 AISPINSFVYFMFNNYHSIF 340
+ + + + +
Sbjct: 179 NTENLIKVIEILISTEWNER 198
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics
consortium (SGC), GAP, alternative splicing, cell
junction, cell membrane; 1.77A {Homo sapiens}
Length = 229
Score = 149 bits (377), Expect = 1e-43
Identities = 53/224 (23%), Positives = 99/224 (44%), Gaps = 24/224 (10%)
Query: 133 PTPLTSSVTNLTYSPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALE----TEG 188
+S NL + + FG L N+G +V +L+ C ++ E +G
Sbjct: 4 HHHHSSGRENLYFQGERVFGCDLGEHLLNSGFEV-PQVLQSCTAFI------ERYGIVDG 56
Query: 189 LFRRSASVALVRQCQTACNNGEPI-----LFHNDIHLAAVLLKTFLRELDEPLLTYDLYD 243
++R S + +++ + ++ + DIH L K + REL PLLTY LY+
Sbjct: 57 IYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYE 116
Query: 244 E-ILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAV 302
+ +ER + +I ++LP +Y L++++ LS + D + M NLA+
Sbjct: 117 KFSDAVSAATDEERLIKIHDVI-QQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAI 175
Query: 303 VFAPNLIWAP------VNSQLSLSAISPINSFVYFMFNNYHSIF 340
V+APNL+ + + + + + V F+ N+ +F
Sbjct: 176 VWAPNLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNHVDVLF 219
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.80A {Homo sapiens}
Length = 202
Score = 145 bits (369), Expect = 1e-42
Identities = 45/201 (22%), Positives = 86/201 (42%), Gaps = 10/201 (4%)
Query: 147 PTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTAC 206
+ + L + + ++ C+ + L +EGL+R S L+ + A
Sbjct: 5 VKKVYSCDLTTLVKAHTTKR-PMVVDMCIREIES-RGLNSEGLYRVSGFSDLIEDVKMAF 62
Query: 207 NNG-EPILFH----NDIHLAAVLLKTFLRELDEPLLTYDLYDE-ILLFPTLNKDERSRYV 260
+ E DI++ LK + R+L PL+TYD Y + I ++ DE+ +
Sbjct: 63 DRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETL 122
Query: 261 KILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAP-VNSQLSL 319
+ + LP + L+Y++ L ++ N M NL +VF P L+ +P +++ +L
Sbjct: 123 HEAL-KLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAAL 181
Query: 320 SAISPINSFVYFMFNNYHSIF 340
+ I V + N +F
Sbjct: 182 NDIRYQRLVVELLIKNEDILF 202
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 145 bits (366), Expect = 8e-40
Identities = 44/202 (21%), Positives = 86/202 (42%), Gaps = 10/202 (4%)
Query: 146 SPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTA 205
+ + L + + ++ C+ + L +EGL+R S L+ + A
Sbjct: 265 HVKKVYSCDLTTLVKAHTTKR-PMVVDMCIREIES-RGLNSEGLYRVSGFSDLIEDVKMA 322
Query: 206 CNNGEPIL-----FHNDIHLAAVLLKTFLRELDEPLLTYDLYDE-ILLFPTLNKDERSRY 259
+ + DI++ LK + R+L PL+TYD Y + I ++ DE+
Sbjct: 323 FDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLET 382
Query: 260 VKILILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAP-VNSQLS 318
+ + + LP + L+Y++ L ++ N M NL +VF P L+ +P +++ +
Sbjct: 383 LHEAL-KLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELDAMAA 441
Query: 319 LSAISPINSFVYFMFNNYHSIF 340
L+ I V + N +F
Sbjct: 442 LNDIRYQRLVVELLIKNEDILF 463
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein,
structural genomics, structural genomics consortium,
SGC; HET: 7PE; 1.49A {Homo sapiens}
Length = 201
Score = 125 bits (317), Expect = 4e-35
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 10/184 (5%)
Query: 164 GDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGEP---ILFHNDIHL 220
+I I+ CV+ + Q L GL+R S V++ + + + +DIH
Sbjct: 14 SPMIPSIVVHCVNEIEQ-RGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHA 72
Query: 221 AAVLLKTFLRELDEPLLTYDLYDE-ILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYI 279
LLK FLR L EPLLT+ L + ++D + + +LP N L ++
Sbjct: 73 ICSLLKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAV-GELPQANRDTLAFL 131
Query: 280 VTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPI---NSFVYFMFNNY 336
+ L ++ S KM NLA VF P ++ V + ++ + I V + +
Sbjct: 132 MIHLQRVAQ-SPHTKMDVANLAKVFGPTIVAHAVPNPDPVTMLQDIKRQPKVVERLLSLP 190
Query: 337 HSIF 340
+
Sbjct: 191 LEYW 194
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural
genomics consortium, SGC, transferase; 2.09A {Homo
sapiens}
Length = 214
Score = 114 bits (288), Expect = 1e-30
Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 12/165 (7%)
Query: 149 QQFGASLQHIKDNNGGDVIAP-ILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACN 207
Q G +L + + +AP +L + V+ + + L++E +R +T +
Sbjct: 21 QSMGLTLPDLPEQFSPPDVAPPLLVKLVEAIER-TGLDSESHYRPELPAP-----RTDWS 74
Query: 208 NGEPILFHNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEK 267
+ + D A +K+FL L PL+T + E ++ L
Sbjct: 75 LSD--VDQWDTAALADGIKSFLLALPAPLVTPEASAEAR---RALREAAGPVGPALEPPT 129
Query: 268 LPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAP 312
LP L++++ L ++ R+ L F P L+ AP
Sbjct: 130 LPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATFGPLLLRAP 174
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain,
phosphatidylethanolamin binding, lipid binding, lipid
bindi protein; HET: PEV; 2.52A {Homo sapiens}
Length = 290
Score = 115 bits (290), Expect = 3e-30
Identities = 16/111 (14%), Positives = 41/111 (36%), Gaps = 1/111 (0%)
Query: 13 YTYVLDKFVEQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFI 72
L + + Y +V N+ +L + F N+ A+Y+ + ++
Sbjct: 66 VLLTLKPYYAKPYEIVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWV 125
Query: 73 RVVLQIF-KAAISAKFGRKMIYINYLHELKSHLNLDQLCIPRQVIEHDERL 122
R + + K +++++I+ +L H+ +Q +P +
Sbjct: 126 REYTKYHERLLTGLKGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALGHEQ 176
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding
protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A*
3p7z_A* 2d4q_A*
Length = 256
Score = 111 bits (279), Expect = 5e-29
Identities = 20/133 (15%), Positives = 52/133 (39%), Gaps = 3/133 (2%)
Query: 13 YTYVLDKFVEQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFI 72
L + + Y +V N+ +L + F N+ A+Y+ + ++
Sbjct: 47 VLLTLKPYYAKPYEIVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWV 106
Query: 73 RVVLQIF-KAAISAKFGRKMIYINYLHELKSHLNLDQLCIPRQVIEHDE--RLTAKLSKG 129
R + + K +++++I+ +L H+ +Q +P + +E ++ K
Sbjct: 107 REYTKYHERLLTGLKGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALEEDLKVFHNALKL 166
Query: 130 SVLPTPLTSSVTN 142
+ T ++ V +
Sbjct: 167 AHKDTKVSIKVGS 179
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 5e-08
Identities = 51/435 (11%), Positives = 124/435 (28%), Gaps = 141/435 (32%)
Query: 6 KEATQTQYTYVLDKFVEQ--DYSLVYFHYGLTSKNKPSLSWLWSAYRAFD-------RKY 56
+E + Y +++ + S++ Y + +++ L++ + F + Y
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMY-IEQRDR-----LYNDNQVFAKYNVSRLQPY 137
Query: 57 KKNLKALYLVHPTGFIRV--------------VLQIFKAAISAKFGRKMIYINYLHELKS 102
K +AL + P + + V +K + K K+ ++N +
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK--VQCKMDFKIFWLNLKNCNSP 195
Query: 103 HLNLDQLCIPRQVIEH--DERLTAKLSKGSVLPTPLTSSVTNL-TYSPTQQFGASL---- 155
L+ L Q + + D T++ S + + S L ++ + L
Sbjct: 196 ETVLEML----QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 156 -----QHIK-------------DNNGGDVIAPILRQCVDYLSQPDAL---ETEGLFRRSA 194
+ D ++ + L E + L +
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 195 SVA---LVRQCQTACNNGEPILFHNDIHLAAVLLK----------------------TFL 229
L R+ P + + A ++ + L
Sbjct: 312 DCRPQDLPRE---VLT-TNPRR----LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 230 RELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVL----KYIVT--FL 283
L+ P ++D + +FP I PT +++ +
Sbjct: 364 NVLE-PAEYRKMFDRLSVFP---PS-----AHI------PTILLSLIWFDVIKSDVMVVV 408
Query: 284 SKIEDRSDLNKMTWNNLAVVFAPNL---IWAPVNSQLSL----------------SAISP 324
+K+ S + K + + P++ + + ++ +L + P
Sbjct: 409 NKLHKYSLVEK--QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 325 INSFVYFMFN--NYH 337
YF ++ +H
Sbjct: 467 PYLDQYF-YSHIGHH 480
Score = 40.2 bits (93), Expect = 0.001
Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 35/153 (22%)
Query: 209 GEPILFHNDIHLAAVLLKTFLRELD--------EPLLTYDLYDEILLFPTLNKDERSRYV 260
GE + DI +V F+ D + +L+ + D I++ + + +
Sbjct: 12 GEHQYQYKDI--LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK--DAVSGTLRL 67
Query: 261 KILILEKLPTDNY-----TVLKYIVTFL-SKIE----DRSDLNKM-------TWNNLAVV 303
+L K + VL+ FL S I+ S + +M +N+ V
Sbjct: 68 FWTLLSK-QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND-NQV 125
Query: 304 FAPNLIW--APVNS-QLSLSAISPI-NSFVYFM 332
FA + P + +L + P N + +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Score = 37.1 bits (85), Expect = 0.009
Identities = 57/375 (15%), Positives = 101/375 (26%), Gaps = 121/375 (32%)
Query: 11 TQYTYVLDKF---VEQDYSLVYFHYGLTSKNKPSL--SWLWSAYRAFDRKYKKNLKALYL 65
T++ V D SL + LT SL +L + R+
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT------- 324
Query: 66 VHPTGFIRVVLQIFKAAISAKFGRKMIYINYLHELKSHLN------LDQLC--------- 110
+P L I +I + N+ H L L+ L
Sbjct: 325 TNP-----RRLSIIAESIRDGLAT---WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 111 ----------IPRQVI---------EHDERLTAKLSKGSVL---PTPLTSSVTNLTYSPT 148
IP ++ + KL K S++ P T S+ ++
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 149 QQFGASLQ-HIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACN 207
+ H R VD+ + P +++ L
Sbjct: 437 VKLENEYALH--------------RSIVDHYNIPKTFDSDDL------------------ 464
Query: 208 NGEPIL---FHNDI--HLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKI 262
P L F++ I HL + + + + LF + D R KI
Sbjct: 465 -IPPYLDQYFYSHIGHHLKNI----------------EHPERMTLFRMVFLDFRFLEQKI 507
Query: 263 L---ILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVF----APNLIWAPVNS 315
L+ + + I D + N + + F NLI +
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-LDFLPKIEENLICSKYTD 566
Query: 316 QLSLSAISPINSFVY 330
L + A+ + ++
Sbjct: 567 LLRI-ALMAEDEAIF 580
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.9 bits (116), Expect = 2e-06
Identities = 50/272 (18%), Positives = 78/272 (28%), Gaps = 97/272 (35%)
Query: 126 LSKGSV---LPTPLTSSVTNLTYSPTQ---QFGASLQHIKDNNGGD----VIAPILRQCV 175
LS GS+ L P T + +Q QF L + D A ++ + +
Sbjct: 11 LSHGSLEHVLLVP-----TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 176 DYLSQPDALETEGLFRRSASVALVRQCQTACNNGEPILFHNDIH-LAAVLLK---TFLRE 231
Y+S G F + ++ L L NDIH LAA LL+ T L +
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENC-------YLEGNDIHALAAKLLQENDTTLVK 118
Query: 232 LDEPLLTYDLYD-------------EILLFPTLNK-------------------DE-RSR 258
E + Y LF + + +E R
Sbjct: 119 TKELIKNY--ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 259 Y------VKILI------LEKLPTDNYTVLKY------IVTFLSKIEDRSDLNKMTWNNL 300
Y V LI L +L K I+ +L + D
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD--------- 227
Query: 301 AVVFAPNLIWAPVNSQLSLSAISPINSFVYFM 332
L+ P+ S I + +++
Sbjct: 228 ----KDYLLSIPI----SCPLIG-VIQLAHYV 250
Score = 35.4 bits (81), Expect = 0.027
Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 35/107 (32%)
Query: 96 YLHELKSHLNLDQLCIPRQVIEHDERLTAKLSKGSV--LP------TPLTSSVT------ 141
L + K+ LDQ IP ER KL K S LP + L +
Sbjct: 392 TLRKAKAPSGLDQSRIP-----FSER---KL-KFSNRFLPVASPFHSHLLVPASDLINKD 442
Query: 142 ----NLTYSPTQ-QF-------GASLQHIKDNNGGDVIAPILRQCVD 176
N++++ Q G+ L+ + + ++ I+R V
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Score = 33.9 bits (77), Expect = 0.079
Identities = 30/180 (16%), Positives = 55/180 (30%), Gaps = 51/180 (28%)
Query: 212 ILFHNDI----------HLAA-VLLKTFLREL----------DEPLLTYDLYDEILLF-- 248
L H + A L + F + L DEP +L + L +
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS 69
Query: 249 PTLNKDERSRYVKIL--ILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNL------ 300
+ + ++ ++L L + + Y I +K+ +D + L
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEF-ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 301 AVVFAPNLIWAPVNSQLSLSA------ISPI-----NSFVYF-----MFNNYHSI---FI 341
A + A NS L + + I N+ YF ++ YH + I
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI 188
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein,
11-CIS-retinal, bothnia dystrophy, acetylation,
cytoplasm, disease mutation; HET: RET; 1.69A {Homo
sapiens} PDB: 3hy5_A*
Length = 316
Score = 30.1 bits (68), Expect = 0.87
Identities = 7/52 (13%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 60 LKALYLVHPTGFIRVVLQIFKAAISAKFGRKMIYI--NYLHELKSHLNLDQL 109
KA++ +H + + K + +K + +++ + L ++ + L
Sbjct: 234 FKAIHFIHQPWYFTTTYNVVKPFLKSKL-LERVFVHGDDLSGFYQEIDENIL 284
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 30.2 bits (67), Expect = 1.1
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 5/82 (6%)
Query: 219 HLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKY 278
LAA+ LK L D ++ + ++ +K L L + +
Sbjct: 59 ILAALTLKNELVSKDSVKTQQFAQR---WITQVSPEAKN-QIKTNALTALVSIEPRIANA 114
Query: 279 IVTFLSKIEDRSDLNKMTWNNL 300
++ I +L W L
Sbjct: 115 AAQLIAAIA-DIELPHGAWPEL 135
>4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural
genomics, lyase; 1.70A {Actinobacillus succinogenes}
PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A*
1jct_A* 3pwg_A* 1bqg_A
Length = 464
Score = 29.4 bits (66), Expect = 2.0
Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 5/80 (6%)
Query: 170 ILRQCVDYLSQPD-ALETEGLFRRSASVALVRQCQTA--CNNGEPILFHNDIHLAAVLLK 226
I Q VD D T R A + NN I H+AA
Sbjct: 320 ISLQSVDIP-LADPHFWTMQGSIRVAQMCHEWGLTWGSHSNNHFDISLAMFTHVAAA-AP 377
Query: 227 TFLRELDEPLLTYDLYDEIL 246
+ +D + + +
Sbjct: 378 GDITAIDTHWIWQEGNQRLT 397
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with
vitamin E deficiency, transport protein; HET: MSE VIV;
1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A*
1oip_A*
Length = 262
Score = 28.8 bits (65), Expect = 2.0
Identities = 8/53 (15%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 60 LKALYLVHPTGFIRVVLQIFKAAISAKFGRKMIYINYLHELKSHLNLDQLCIP 112
++ ++L++ V + K ++ K ++ I+++ + +S L +P
Sbjct: 175 VRGIHLINEPVIFHAVFSMIKPFLTEKI-KERIHMHGNNYKQSLLQHFPDILP 226
>1i8o_A Cytochrome C2; electron transport, heme, ammonia, oxidized; HET:
HEC; 1.15A {Rhodopseudomonas palustris} SCOP: a.3.1.1
PDB: 1fj0_A* 1hh7_A* 1i8p_A*
Length = 114
Score = 27.3 bits (61), Expect = 3.3
Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 21/83 (25%)
Query: 30 FHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKAAISAKFGR 89
F Y + N +W+A N+ YL P F++ L A A
Sbjct: 42 FTYSPLNHNSGEAGLVWTA---------DNIVP-YLADPNAFLKKFLTEKGKADQAVGVT 91
Query: 90 KMIY-----------INYLHELK 101
KM + + YL LK
Sbjct: 92 KMTFKLANEQQRKDVVAYLATLK 114
>1jdl_A C552, cytochrome C2, ISO-2; alpha helix, electron transport; HET:
HEM; 1.70A {Rhodospirillum centenum} SCOP: a.3.1.1
Length = 121
Score = 27.3 bits (61), Expect = 3.4
Identities = 15/71 (21%), Positives = 20/71 (28%), Gaps = 25/71 (35%)
Query: 55 KYKKNLKAL--------------YLVHPTGFIRVVLQIFKAAISAKFGRKMIY------- 93
Y A YL P F+R L A AK KM++
Sbjct: 48 NYSAINHAAGEAGLHWTPENIIAYLPDPNAFLRKFLADAGHAEQAKGSTKMVFKLPDEQE 107
Query: 94 ----INYLHEL 100
+ YL +
Sbjct: 108 RKDVVAYLKQF 118
>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex
component, helical bundle, membrane tethering C membrane
traffic, VPS51; HET: MSE; 2.90A {Saccharomyces
cerevisiae}
Length = 271
Score = 28.3 bits (62), Expect = 3.5
Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 216 NDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTV 275
N+I +K + LD Y+ Y ++ T N + + + +L L+ +P D
Sbjct: 113 NNIDQLLKFIKLLMAPLDSADDYYETYSKL----TNNNPDSAVWSFVLALKGIPWDLALW 168
Query: 276 LKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPN 307
K + + +D + ++ N +F +
Sbjct: 169 KKMWSAYNLETDDTDEGSRPDSNRDLFIFKWD 200
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.405
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,059,354
Number of extensions: 292290
Number of successful extensions: 511
Number of sequences better than 10.0: 1
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 33
Length of query: 342
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 248
Effective length of database: 4,077,219
Effective search space: 1011150312
Effective search space used: 1011150312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.3 bits)