RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12161
(342 letters)
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 196
Score = 143 bits (361), Expect = 3e-42
Identities = 92/197 (46%), Positives = 131/197 (66%), Gaps = 6/197 (3%)
Query: 147 PTQQFGASLQHIKDNNG-GDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTA 205
P QQFG SLQH+++ N + I +LR+ V YL AL TEG+FRRSA+ +VR+ Q
Sbjct: 3 PNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQA-HALTTEGIFRRSANTQVVREVQQK 61
Query: 206 CNNGEPILF--HNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKIL 263
N G P+ F +N +HL AV+LKTFLREL EPLLT+DLY ++ F +++ +R
Sbjct: 62 YNMGLPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATL-Q 120
Query: 264 ILEKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAIS 323
+L+ LP +NY VL+++ FL +I SD NKMT NLAVVF PNL+WA ++ ++L AI+
Sbjct: 121 VLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAK-DAAITLKAIN 179
Query: 324 PINSFVYFMFNNYHSIF 340
PIN+F F+ ++ +F
Sbjct: 180 PINTFTKFLLDHQGELF 196
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 191
Score = 126 bits (317), Expect = 8e-36
Identities = 41/179 (22%), Positives = 74/179 (41%), Gaps = 8/179 (4%)
Query: 169 PILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGE-------PILFHNDIHLA 221
I+++C+ + + +GL+R + V++ + + + I +I
Sbjct: 9 SIIKKCIHAVET-RGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTI 67
Query: 222 AVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILILEKLPTDNYTVLKYIVT 281
LKT+LR L PL+ Y + L E ++ +LP N +L ++
Sbjct: 68 TSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMN 127
Query: 282 FLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNNYHSIF 340
L+K+ D N MT NL VVF P L+ + ++ I N + + N+ IF
Sbjct: 128 HLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETVAAIMDIKFQNIVIEILIENHEKIF 186
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 196
Score = 122 bits (306), Expect = 4e-34
Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 8/196 (4%)
Query: 151 FGASLQHIKDNNGGDVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTACNNGE 210
+ L + + ++ C+ + L++EGL+R S + + A +
Sbjct: 3 YCCDLTTLVKAHNTQ-RPMVVDICIREIEA-RGLKSEGLYRVSGFTEHIEDVKMAFDRDG 60
Query: 211 PILF-----HNDIHLAAVLLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSRYVKILIL 265
+ DI++ LK + R+L P++TYD Y + + ++ + +L
Sbjct: 61 EKADISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVL 120
Query: 266 EKLPTDNYTVLKYIVTFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQL-SLSAISP 324
LP +Y L+Y++ L K+ N M NL +VF P L+ P +S L +L +
Sbjct: 121 MLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVFGPTLMRPPEDSTLTTLHDMRY 180
Query: 325 INSFVYFMFNNYHSIF 340
V + N +F
Sbjct: 181 QKLIVQILIENEDVLF 196
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 184
Score = 113 bits (284), Expect = 4e-31
Identities = 34/175 (19%), Positives = 69/175 (39%), Gaps = 8/175 (4%)
Query: 165 DVIAPILRQCVDYLSQPDALETEGLFRRSASVALVRQCQTA-CNNGEPILFHNDIHLAAV 223
D+ P+L + V+ + + LE L+R +S L Q C+ L D+H+ A
Sbjct: 12 DIAPPLLIKLVEAIEK-KGLECSTLYRTQSSSNLAELRQLLDCDTPSVDLEMIDVHVLAD 70
Query: 224 LLKTFLRELDEPLLTYDLYDEILLFPTLNKDERSR---YVKILILEKLPTDNYTVLKYIV 280
K +L +L P++ +Y E++ + K++ +P + L+Y++
Sbjct: 71 AFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLL 130
Query: 281 TFLSKIEDRSDLNKMTWNNLAVVFAPNLIWAPVNSQLSLSAISPINSFVYFMFNN 335
K+ S N + L+ +F+P L S + + + +
Sbjct: 131 KHFFKLSQTSSKNLLNARVLSEIFSPMLFRFS---AASSDNTENLIKVIEILIST 182
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of
phosphatidylinositol transfer protein sec14p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 203
Score = 44.4 bits (104), Expect = 5e-06
Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 2/95 (2%)
Query: 17 LDKFVEQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVL 76
VE +++ S +S++ A Y + + Y+++
Sbjct: 70 AGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAF 129
Query: 77 QIFKAAISAKFGRKMIYI--NYLHELKSHLNLDQL 109
++FK + K+ + +Y EL + + L
Sbjct: 130 RLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENL 164
>d1i4ua_ b.60.1.1 (A:) Alpha-crustacyanin {European lobster (Homarus
gammarus) [TaxId: 6707]}
Length = 181
Score = 25.9 bits (56), Expect = 5.9
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 22 EQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKAL 63
+Y+ +Y S+++S +Y K +A
Sbjct: 112 YSNYACLYSCIDYNFGYHSDFSFIFSRSANLADQYVKKCEAA 153
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 69
Score = 23.9 bits (52), Expect = 8.5
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 134 TPLTSSVTNLTYSPTQQFGASLQHIKDNNGGDVIAPILRQCVDYLSQ 180
T + V NL + + G + Q +K+ + ++Q VD+LS
Sbjct: 5 TVAQNQVLNLIKACPRPEGLNFQDLKNQLKH-MSVSSIKQAVDFLSN 50
>d1vjfa_ d.116.1.1 (A:) Hypothetical protein CC0111 {Caulobacter
crescentus [TaxId: 155892]}
Length = 168
Score = 25.0 bits (54), Expect = 9.3
Identities = 2/23 (8%), Positives = 7/23 (30%)
Query: 106 LDQLCIPRQVIEHDERLTAKLSK 128
D + + ++H +
Sbjct: 11 FDAHGVDHKTLDHPPVFRVEEGL 33
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.405
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,236,375
Number of extensions: 56110
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 11
Length of query: 342
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 256
Effective length of database: 1,226,816
Effective search space: 314064896
Effective search space used: 314064896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)