Query psy12162
Match_columns 242
No_of_seqs 127 out of 353
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 20:19:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12162.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12162hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pg7_A Neurofibromin; SEC lipi 100.0 1.8E-33 6E-38 251.0 11.4 131 109-240 1-133 (256)
2 3peg_A Neurofibromin; SEC14 do 100.0 3.1E-29 1.1E-33 227.5 10.9 132 108-240 19-152 (290)
3 1r5l_A Alpha-TTP, protein (alp 99.7 2.1E-16 7.2E-21 137.6 9.5 126 112-238 76-211 (262)
4 3hx3_A Retinaldehyde-binding p 99.6 4.2E-16 1.4E-20 141.5 10.1 126 111-237 134-269 (316)
5 1aua_A Phosphatidylinositol tr 99.6 1.1E-15 3.8E-20 136.3 7.8 125 114-238 99-242 (296)
6 1olm_A SEC14-like protein 2; l 99.6 4.3E-15 1.5E-19 138.1 8.7 117 122-238 87-222 (403)
7 3q8g_A CRAL-TRIO domain-contai 99.5 5.4E-15 1.8E-19 134.8 7.2 125 114-238 114-257 (320)
8 2sak_A Staphylokinase; plasmin 62.7 23 0.00077 27.9 6.6 57 121-177 12-70 (121)
9 1c76_A Staphylokinase, SAK; be 60.5 20 0.0007 28.5 6.1 68 109-177 14-85 (136)
10 2q3l_A Uncharacterized protein 37.5 80 0.0027 23.9 6.2 77 147-227 33-110 (126)
11 2lf0_A Uncharacterized protein 22.8 28 0.00096 27.3 1.1 18 197-214 88-105 (123)
12 4hyl_A Stage II sporulation pr 20.1 2.4E+02 0.0082 20.0 5.9 63 156-223 31-94 (117)
No 1
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=100.00 E-value=1.8e-33 Score=250.97 Aligned_cols=131 Identities=15% Similarity=0.226 Sum_probs=124.0
Q ss_pred ccChHHHHhcCCEEEeCCCCCCCeEEEEEcccCCCCCccchhhHHHHHHHHhhhhcCCCeEEEEEecCCCCCCCCcHHHH
Q psy12162 109 EEDFADVASYGIVDVVGDDMFGRKLIVLSACKLPSNKELDHGRLLGYLTYVLDKFVEQDYSLVYFHYGLTSKNKPSLSWL 188 (242)
Q Consensus 109 ~edf~di~~~gi~Y~~G~Dk~GRPVVVi~a~~lP~~~~~D~e~ll~yll~tLd~~v~~~YvlVyfhtg~s~~n~P~lswL 188 (242)
.|||++|++++++|++|.|++||||||++||++|.. .+|+|+|++|++++|+++++++|++||+|||++..|.|+++||
T Consensus 1 ~ed~~~i~~~~ify~~G~d~dGrpViv~~~~~l~~~-~~D~e~Ll~~vl~tl~~~~~~~y~lV~d~T~~~~~n~p~~~wl 79 (256)
T 3pg7_A 1 KEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTG-QINGDLLIYHVLLTLKPYYAKPYEIVVDLTHTGPSNRFKTDFL 79 (256)
T ss_dssp CTTTTTHHHHTSEEEEEECTTSCEEEEEEGGGCCBT-TBCHHHHHHHHHHHHTTTTTSCEEEEEECTTCCGGGCCCHHHH
T ss_pred CcchhHHHHcCCEEEcCcCCCCCEEEEEEeecCCCC-CCCHHHHHHHHHHHHHHhcCCCeEEEEECCCCCcccCCcHHHH
Confidence 379999999999999999999999999999999974 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHhccceEEEEcCChHHHHHHHHh-ccC-CccccccEEEEeCCC
Q psy12162 189 WSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIF-KAV-PVDFRTTLDLVVVPE 240 (242)
Q Consensus 189 k~~y~~L~r~ykKNLkalYIVHPt~~~K~~~~ll-~pF-S~Kf~~KI~yV~~~e 240 (242)
+++|+++|++|+|||+++||||||+|+|.+++.+ ++| +.|+++|++||+..+
T Consensus 80 ~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~sl~ 133 (256)
T 3pg7_A 80 SKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPG 133 (256)
T ss_dssp HHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESSTT
T ss_pred HHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECCHH
Confidence 9999999999999999999999999999887765 567 889999999998765
No 2
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.96 E-value=3.1e-29 Score=227.53 Aligned_cols=132 Identities=14% Similarity=0.218 Sum_probs=121.5
Q ss_pred cccChHHHHhcCCEEEeCCCCCCCeEEEEEcccCCCCCccchhhHHHHHHHHhhhhcCCCeEEEEEecCCCCCCCCcHHH
Q psy12162 108 DEEDFADVASYGIVDVVGDDMFGRKLIVLSACKLPSNKELDHGRLLGYLTYVLDKFVEQDYSLVYFHYGLTSKNKPSLSW 187 (242)
Q Consensus 108 ~~edf~di~~~gi~Y~~G~Dk~GRPVVVi~a~~lP~~~~~D~e~ll~yll~tLd~~v~~~YvlVyfhtg~s~~n~P~lsw 187 (242)
+.++|++|++.+++|+.|.|++||||||+++|+++.. .+|+|.|++|++++++++++++|+|||+||+++..|.|+.+|
T Consensus 19 ~~e~~~~i~~~~~f~~~g~d~dG~PViv~~~~~~~~~-~~D~e~Lly~il~tl~~~~~~~y~lV~D~T~~~~~n~p~~~~ 97 (290)
T 3peg_A 19 EKEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTG-QINGDLLIYHVLLTLKPYYAKPYEIVVDLTHTGPSNRFKTDF 97 (290)
T ss_dssp -----CCGGGTTTEEEEEECTTSCEEEEEEGGGCCBT-TBCHHHHHHHHHHHHTTTTTSCEEEEEECTTCCGGGCCCHHH
T ss_pred ChhhhhhhhcCCeEEEeccCCCCCEEEEEEeecCCcc-CCCHHHHHHHHHHHHHHhcCCCeEEEEEcCCCCccCCChHHH
Confidence 3578999999999999999999999999999999974 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHhccceEEEEcCChHHHHHHH-HhccC-CccccccEEEEeCCC
Q psy12162 188 LWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQ-IFKAV-PVDFRTTLDLVVVPE 240 (242)
Q Consensus 188 Lk~~y~~L~r~ykKNLkalYIVHPt~~~K~~~~-ll~pF-S~Kf~~KI~yV~~~e 240 (242)
|+++++++|++|+|||+++||||||+|+|.+++ ++++| +.|+++|++|++.+.
T Consensus 98 l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~~ 152 (290)
T 3peg_A 98 LSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPG 152 (290)
T ss_dssp HGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSSC
T ss_pred HHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCHH
Confidence 999999999999999999999999999998764 77889 999999999998774
No 3
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=99.66 E-value=2.1e-16 Score=137.62 Aligned_cols=126 Identities=8% Similarity=0.096 Sum_probs=107.9
Q ss_pred hHHHHhcCCE-EEeCCCCCCCeEEEEEcccCCCCCccchhhHHHHHHHHhhhhcC------CCeEEEEEecCCCCCCC--
Q psy12162 112 FADVASYGIV-DVVGDDMFGRKLIVLSACKLPSNKELDHGRLLGYLTYVLDKFVE------QDYSLVYFHYGLTSKNK-- 182 (242)
Q Consensus 112 f~di~~~gi~-Y~~G~Dk~GRPVVVi~a~~lP~~~~~D~e~ll~yll~tLd~~v~------~~YvlVyfhtg~s~~n~-- 182 (242)
+..+.+.|+. +..|.|++||||+++.+.++..+ ..+.+.++++.+..++.++. ..+++|++.+|++..+.
T Consensus 76 ~~~~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~-~~~~~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~ 154 (262)
T 1r5l_A 76 IIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPK-VFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQ 154 (262)
T ss_dssp THHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTT-TSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHH
T ss_pred HHHHHHcCCccCCCCcCCCCCEEEEEeccccCcc-cCCHHHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhc
Confidence 3455577864 55699999999999988877654 46777788888888887655 36899999999987764
Q ss_pred CcHHHHHHHHHHhhHHHHhccceEEEEcCChHHHHHHHHhccC-CccccccEEEEeC
Q psy12162 183 PSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKAV-PVDFRTTLDLVVV 238 (242)
Q Consensus 183 P~lswLk~~y~~L~r~ykKNLkalYIVHPt~~~K~~~~ll~pF-S~Kf~~KI~yV~~ 238 (242)
+..++++++..+++.+|+++|+++||||++++++++|++++|| ++|+.+||+++..
T Consensus 155 ~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~ 211 (262)
T 1r5l_A 155 ITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGN 211 (262)
T ss_dssp CCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCS
T ss_pred cCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCC
Confidence 5679999999999999999999999999999999999999999 9999999999853
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=99.64 E-value=4.2e-16 Score=141.47 Aligned_cols=126 Identities=14% Similarity=0.237 Sum_probs=108.9
Q ss_pred ChHHHHhcCCE-EEeCCCCCCCeEEEEEcccCCCCCccchhhHHHHHHHHhhhhcC------CCeEEEEEecCCCCCCC-
Q psy12162 111 DFADVASYGIV-DVVGDDMFGRKLIVLSACKLPSNKELDHGRLLGYLTYVLDKFVE------QDYSLVYFHYGLTSKNK- 182 (242)
Q Consensus 111 df~di~~~gi~-Y~~G~Dk~GRPVVVi~a~~lP~~~~~D~e~ll~yll~tLd~~v~------~~YvlVyfhtg~s~~n~- 182 (242)
++..+.+.|++ +..|.|+.||||+++.+.++..+ ..+.+.++++++..++.++. ..+++|++.+|++..+.
T Consensus 134 ~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~-~~~~~~~~r~~~~~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~ 212 (316)
T 3hx3_A 134 AVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQ-EITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAA 212 (316)
T ss_dssp HHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTT-TSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHH
T ss_pred HHHHHHHcCCccccCCCCCCCCEEEEEecccCCCC-CCCHHHHHHHHHHHHHHHHhcccCCcceEEEEEECCCCCHHHhc
Confidence 34555677874 45699999999999988777554 57888999999999988775 47999999999987654
Q ss_pred -CcHHHHHHHHHHhhHHHHhccceEEEEcCChHHHHHHHHhccC-CccccccEEEEe
Q psy12162 183 -PSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKAV-PVDFRTTLDLVV 237 (242)
Q Consensus 183 -P~lswLk~~y~~L~r~ykKNLkalYIVHPt~~~K~~~~ll~pF-S~Kf~~KI~yV~ 237 (242)
.+.++++++..+++.+|+.+|+++||||++++++++|++++|| ++|+.+||++..
T Consensus 213 ~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~ 269 (316)
T 3hx3_A 213 SLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHG 269 (316)
T ss_dssp HCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEE
T ss_pred cCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeC
Confidence 4678999999999999999999999999999999999999999 999999998874
No 5
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=99.60 E-value=1.1e-15 Score=136.27 Aligned_cols=125 Identities=13% Similarity=0.121 Sum_probs=102.4
Q ss_pred HHHhcCCEEEeCCCCCCCeEEEEEcccCCCCC---ccchhhHHHHHHHHhhhhc--------------CCCeEEEEEecC
Q psy12162 114 DVASYGIVDVVGDDMFGRKLIVLSACKLPSNK---ELDHGRLLGYLTYVLDKFV--------------EQDYSLVYFHYG 176 (242)
Q Consensus 114 di~~~gi~Y~~G~Dk~GRPVVVi~a~~lP~~~---~~D~e~ll~yll~tLd~~v--------------~~~YvlVyfhtg 176 (242)
.+.+....|..|+|++||||+++...++..++ ..+.+.++++++..++.++ ...+++|++.+|
T Consensus 99 ~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g 178 (296)
T 1aua_A 99 LIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKG 178 (296)
T ss_dssp HHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTT
T ss_pred HHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCC
Confidence 34444445678999999999999877764321 2467778888888776432 246899999999
Q ss_pred CCCCCCCc-HHHHHHHHHHhhHHHHhccceEEEEcCChHHHHHHHHhccC-CccccccEEEEeC
Q psy12162 177 LTSKNKPS-LSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKAV-PVDFRTTLDLVVV 238 (242)
Q Consensus 177 ~s~~n~P~-lswLk~~y~~L~r~ykKNLkalYIVHPt~~~K~~~~ll~pF-S~Kf~~KI~yV~~ 238 (242)
++..+.+. .++++++..+++.+|+++|+++||||++++++++|++++|| ++|+.+||+++..
T Consensus 179 ~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~ 242 (296)
T 1aua_A 179 ISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGS 242 (296)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCc
Confidence 98777654 68899999999999999999999999999999999999999 9999999999864
No 6
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=99.56 E-value=4.3e-15 Score=138.06 Aligned_cols=117 Identities=18% Similarity=0.241 Sum_probs=101.2
Q ss_pred EEeCCCCCCCeEEEEEcccCCCCC---ccchhhHHHHHHHHhhhhcC-------------CCeEEEEEecCCCCCCC--C
Q psy12162 122 DVVGDDMFGRKLIVLSACKLPSNK---ELDHGRLLGYLTYVLDKFVE-------------QDYSLVYFHYGLTSKNK--P 183 (242)
Q Consensus 122 Y~~G~Dk~GRPVVVi~a~~lP~~~---~~D~e~ll~yll~tLd~~v~-------------~~YvlVyfhtg~s~~n~--P 183 (242)
+..|.|++||||+++...++..++ ..+.+.+++|++..+|.++. ..+++|++..|++..+. |
T Consensus 87 ~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~ 166 (403)
T 1olm_A 87 GMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKP 166 (403)
T ss_dssp EEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHH
T ss_pred eeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhH
Confidence 357999999999999888765421 25678899999888876532 57899999999987765 5
Q ss_pred cHHHHHHHHHHhhHHHHhccceEEEEcCChHHHHHHHHhccC-CccccccEEEEeC
Q psy12162 184 SLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKAV-PVDFRTTLDLVVV 238 (242)
Q Consensus 184 ~lswLk~~y~~L~r~ykKNLkalYIVHPt~~~K~~~~ll~pF-S~Kf~~KI~yV~~ 238 (242)
..++++++.++++.+|+++|+++||||++++++++|++++|| ++++.+||+++..
T Consensus 167 ~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~ 222 (403)
T 1olm_A 167 AVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGA 222 (403)
T ss_dssp HHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCT
T ss_pred HHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEECh
Confidence 688999999999999999999999999999999999999999 9999999999854
No 7
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=99.54 E-value=5.4e-15 Score=134.75 Aligned_cols=125 Identities=14% Similarity=0.093 Sum_probs=103.1
Q ss_pred HHHhcCCEEEeCCCCCCCeEEEEEcccCCCCC---ccchhhHHHHHHHHhhhhc--------------CCCeEEEEEecC
Q psy12162 114 DVASYGIVDVVGDDMFGRKLIVLSACKLPSNK---ELDHGRLLGYLTYVLDKFV--------------EQDYSLVYFHYG 176 (242)
Q Consensus 114 di~~~gi~Y~~G~Dk~GRPVVVi~a~~lP~~~---~~D~e~ll~yll~tLd~~v--------------~~~YvlVyfhtg 176 (242)
.+.+.+..|..|+|++||||+++...++..++ ..+.++++++++..++.++ -+..++|++..|
T Consensus 114 ~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g 193 (320)
T 3q8g_A 114 KLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKG 193 (320)
T ss_dssp HHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTT
T ss_pred HHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCC
Confidence 45566778889999999999999887765321 1255677888877766542 145789999999
Q ss_pred CCCCCCCc-HHHHHHHHHHhhHHHHhccceEEEEcCChHHHHHHHHhccC-CccccccEEEEeC
Q psy12162 177 LTSKNKPS-LSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKAV-PVDFRTTLDLVVV 238 (242)
Q Consensus 177 ~s~~n~P~-lswLk~~y~~L~r~ykKNLkalYIVHPt~~~K~~~~ll~pF-S~Kf~~KI~yV~~ 238 (242)
++..+.+. .++++++..+++.+|+++|+++||||++++++++|++++|| ++|+.+||+++..
T Consensus 194 ~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~ 257 (320)
T 3q8g_A 194 ISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGS 257 (320)
T ss_dssp CCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCT
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCC
Confidence 98777643 68899999999999999999999999999999999999999 9999999999854
No 8
>2sak_A Staphylokinase; plasminogen activation, fibrinolysis, hydrolase, plasminogen activator; 1.80A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1bui_C*
Probab=62.65 E-value=23 Score=27.89 Aligned_cols=57 Identities=19% Similarity=0.326 Sum_probs=45.7
Q ss_pred EEEeCCCCCCCeEEEEE--cccCCCCCccchhhHHHHHHHHhhhhcCCCeEEEEEecCC
Q psy12162 121 VDVVGDDMFGRKLIVLS--ACKLPSNKELDHGRLLGYLTYVLDKFVEQDYSLVYFHYGL 177 (242)
Q Consensus 121 ~Y~~G~Dk~GRPVVVi~--a~~lP~~~~~D~e~ll~yll~tLd~~v~~~YvlVyfhtg~ 177 (242)
+-+.|+|+.|.-++..- --++..-..++-+.++.|+-..++....++|-+|-|+...
T Consensus 12 INvtGvd~~g~~~~~p~y~d~~l~~g~~~tK~elL~~Vq~~idas~~~qf~vVdf~e~A 70 (121)
T 2sak_A 12 VNVTGVDSKGNELLSPHYVEFPIKPGTTLTKEKIEYYVEWALDATAYKEFRVVELDPSA 70 (121)
T ss_dssp EEEEEECTTCCEEEEEEEEEEECCTTCEECHHHHHHHHHHHHTTSTTTTCEEEEECTTC
T ss_pred EEEEeEeCCCCEEEeeeeEEEEcccCcEecHHHHHHHHHHHhhhhhccceEEEecCccc
Confidence 34569999999998763 3344443478889999999999999988899999999764
No 9
>1c76_A Staphylokinase, SAK; beta-grAsp family, hydrolase; 2.25A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1c77_A 1c78_A 1c79_A 1ssn_A
Probab=60.50 E-value=20 Score=28.53 Aligned_cols=68 Identities=16% Similarity=0.295 Sum_probs=47.4
Q ss_pred ccChHHHHhcCC-EEEeCCCCCCCeEE---EEEcccCCCCCccchhhHHHHHHHHhhhhcCCCeEEEEEecCC
Q psy12162 109 EEDFADVASYGI-VDVVGDDMFGRKLI---VLSACKLPSNKELDHGRLLGYLTYVLDKFVEQDYSLVYFHYGL 177 (242)
Q Consensus 109 ~edf~di~~~gi-~Y~~G~Dk~GRPVV---Vi~a~~lP~~~~~D~e~ll~yll~tLd~~v~~~YvlVyfhtg~ 177 (242)
+.+|.+....-+ +-+-|+|..|+-|+ ++-- ++-.-..++.+.+++|+-..|+..+.++|.+|=|+-+.
T Consensus 14 ~kdY~E~~G~~LMiNVTGvD~~G~~ilsP~Y~e~-~Lk~G~tltKeeil~~VQ~~idas~~~~f~vV~~~e~a 85 (136)
T 1c76_A 14 DASYFEPTGPYLMVNVTGVDGKGNELLSPHYVEF-PIKPGTTLTKEKIEYYVEWALDATAYKEFRVVELDPSA 85 (136)
T ss_dssp --CCSCCSSCEEEEEEEEECTTCCEEECCCCEEE-ECCTTCEECHHHHHHHHHHHHTTSTTTTEEEEEECTTC
T ss_pred CcccccCCCCEEEEEEeeecCCCCEEeccccEEE-ecCcCceecHHHHHHHHHHHhhhhhcCceEEEecCCCc
Confidence 344444333322 34569999999887 3322 33333478899999999999999999999999888654
No 10
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=37.46 E-value=80 Score=23.89 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=51.3
Q ss_pred cchhhHHHHHHHHhhhhcCCCeEEEEEecCCCCCCCCcHHHHHHHHHHhhHHHHhccceEEEEcCChHHHHHHHHhccC-
Q psy12162 147 LDHGRLLGYLTYVLDKFVEQDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFKAV- 225 (242)
Q Consensus 147 ~D~e~ll~yll~tLd~~v~~~YvlVyfhtg~s~~n~P~lswLk~~y~~L~r~ykKNLkalYIVHPt~~~K~~~~ll~pF- 225 (242)
-|++.++..+-..++..-..+.-+++..+.+.. ..++-++.-.+ +...+.+...++=||--.-|.+.+.++.++|
T Consensus 33 ~d~~~l~~~l~~~l~~~~~~~i~ll~~~~~f~G---~~~~a~~~d~k-~~~~h~~~~~RiAvV~d~~W~~~~~~~~~~~~ 108 (126)
T 2q3l_A 33 EDYEQMTPLLESALAGIKTPEIVALIDITELDG---LSLHAAWDDLK-LGLKHGKEFKRVAIIGQGELQEWATRVANWFT 108 (126)
T ss_dssp HHHHHHHHHHHHHTTTCCSSCEEEEEEEEEEEE---ECHHHHHHHHH-HHHHHGGGEEEEEEECCSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEEecCCCC---CCHHHHHHHHH-hhhhHHhcCCEEEEEcChHHHHHHHHHHhhcc
Confidence 577766665555555544434666654443311 12444444433 5667889999999999999999999999999
Q ss_pred Cc
Q psy12162 226 PV 227 (242)
Q Consensus 226 S~ 227 (242)
+.
T Consensus 109 ~~ 110 (126)
T 2q3l_A 109 PG 110 (126)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 11
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=22.76 E-value=28 Score=27.34 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=15.1
Q ss_pred HHHHhccceEEEEcCChH
Q psy12162 197 RKYKKNLKALYLVHPTGF 214 (242)
Q Consensus 197 r~ykKNLkalYIVHPt~~ 214 (242)
-+++|.++.+.||||-.-
T Consensus 88 GkLKKSVrGLVVVHPMTa 105 (123)
T 2lf0_A 88 GKLKKSVRGLVVVHPMTA 105 (123)
T ss_dssp HHHHHHTTSCEEECSSSH
T ss_pred HHHhhcccceeEecCchH
Confidence 367999999999999654
No 12
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=20.09 E-value=2.4e+02 Score=19.96 Aligned_cols=63 Identities=21% Similarity=0.154 Sum_probs=41.2
Q ss_pred HHHHhhhhcC-CCeEEEEEecCCCCCCCCcHHHHHHHHHHhhHHHHhccceEEEEcCChHHHHHHHHhc
Q psy12162 156 LTYVLDKFVE-QDYSLVYFHYGLTSKNKPSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFK 223 (242)
Q Consensus 156 ll~tLd~~v~-~~YvlVyfhtg~s~~n~P~lswLk~~y~~L~r~ykKNLkalYIVHPt~~~K~~~~ll~ 223 (242)
+...+..+.. ++ .+|++.++.+.-..-.++.|..+++. .+++=..+.+++++--++-++.+.+
T Consensus 31 l~~~l~~~~~~~~-~vvlDls~v~~iDssgl~~L~~~~~~----~~~~g~~l~l~~~~~~v~~~l~~~g 94 (117)
T 4hyl_A 31 VQAAVLPRVTAKG-KMILDLREVSYMSSAGLRVLLSLYRH----TSNQQGALVLVGVSEEIRDTMEITG 94 (117)
T ss_dssp HHHHHGGGCCTTC-EEEEEEEEEEEECHHHHHHHHHHHHH----HHHTTCEEEEECCCHHHHHHHHHHT
T ss_pred HHHHHHHHHccCC-eEEEECCCCcEEcHHHHHHHHHHHHH----HHHcCCEEEEEeCCHHHHHHHHHhC
Confidence 3444555444 34 78888888765454456666665554 4445577999999988888877654
Done!