RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12162
(242 letters)
>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain. This family
includes divergent members of the CRAL-TRIO domain
family. This family includes ECM25 that contains a
divergent CRAL-TRIO domain identified by Gallego and
colleagues.
Length = 149
Score = 86.6 bits (215), Expect = 2e-21
Identities = 39/100 (39%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 125 GDDMFGRKLIVLSACKLPSNKELDHGRLLGYLTYVL-DKFVEQDYSLVYFHYGLTSKNKP 183
G D GR ++V A +LP++ D RLL YL +L ++ + + +V H G+T NKP
Sbjct: 7 GRDKEGRPVLVFDAKRLPASDLDDLDRLLFYLLSILSEELKPKGFVVVIDHTGVTR-NKP 65
Query: 184 SLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQIFK 223
S SWL Y+ R + KNLKA+Y+VHP+ F++ L+
Sbjct: 66 SWSWLKKLYKLLPRAFPKNLKAVYIVHPSTFLKKFLKTLG 105
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain. Found in
secretory proteins, such as S. cerevisiae
phosphatidylinositol transfer protein (Sec14p), and in
lipid regulated proteins such as RhoGAPs, RhoGEFs and
neurofibromin (NF1). SEC14 domain of Dbl is known to
associate with G protein beta/gamma subunits.
Length = 157
Score = 67.4 bits (165), Expect = 4e-14
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 109 EEDFADVASYGIVDVVGDDMFGRKLIVLSACKLPSNKELDHGRLLGYLTYVLDKFVEQDY 168
E+ ++ G + G D GR ++++ A +K LD LL YL Y L+K +++D
Sbjct: 1 LEELKELGKVGYLG--GRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDD 58
Query: 169 SLVYFHY------GLTSKNK-PSLSWLWSAYRAFDRKYKKNLKALYLVHPTGFIRVVLQI 221
V GL+ + P S L + Y + LKA+Y+++P F +V+ +I
Sbjct: 59 EQVEGFVVIIDLKGLSLSHLLPDPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKI 118
Query: 222 FK 223
K
Sbjct: 119 VK 120
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S. cerevisiae
phosphatidylinositol transfer protein (Sec14p). Domain
in homologues of a S. cerevisiae phosphatidylinositol
transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and
the RasGAP, neurofibromin (NF1). Lipid-binding domain.
The SEC14 domain of Dbl is known to associate with G
protein beta/gamma subunits.
Length = 158
Score = 65.4 bits (160), Expect = 2e-13
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 8/106 (7%)
Query: 125 GDDMFGRKLIVLSACKLPSNKELDHGRLLGYLTYVLDKFVEQ---DYSLVYFHYGLTSKN 181
G D GR +++ A + LL YL YVL+K +++ + F K
Sbjct: 14 GYDKDGRPVLIERAGRFDLKSV-TLEELLRYLVYVLEKILQEEKKTGGIEGFTVIFDLKG 72
Query: 182 KPSLSWLWSAYRA----FDRKYKKNLKALYLVHPTGFIRVVLQIFK 223
+ S R Y + L +Y+++P F RV+ +I K
Sbjct: 73 LSMSNPDLSVLRKILKILQDHYPERLGKVYIINPPWFFRVLWKIIK 118
>gnl|CDD|219927 pfam08601, PAP1, Transcription factor PAP1. The transcription
factor Pap1 regulates antioxidant-gene transcription in
response to H2O2. This region is cysteine rich.
Alkylation of cysteine residues following treatment with
a cysteine alkylating agent can mask the accessibility
of the nuclear exporter Crm1, triggering nuclear
accumulation and Pap1 dependent transcriptional
expression.
Length = 344
Score = 30.7 bits (69), Expect = 0.74
Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 13/107 (12%)
Query: 7 PNFPGIRNAIASNNDEETPYPSLSDFHDYEPNLEFDDSELQASLNGDAEEIKVFDTPVPF 66
PN PGI +A + P D+ + + DD + N D + +P F
Sbjct: 186 PNIPGIDFLLAFPGGQFDP-ELFGDYREPQDANLSDDFDPNGLFN-DEFSMPDPLSPFHF 243
Query: 67 ---DYLESPVSDGTIEENFEEELINAPMGQLDSLAATCTDDELKDEE 110
DYL +G + G LA + + +E
Sbjct: 244 NDKDYLSPSPDEGPPD--------AQVAGPKKDLADQIDNQDEDEEV 282
>gnl|CDD|236571 PRK09565, PRK09565, hypothetical protein; Reviewed.
Length = 533
Score = 30.6 bits (69), Expect = 0.86
Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 12/88 (13%)
Query: 27 PSLSDFHDYEPNL---EFDDSELQASLNGDAEEIKVFDTPVPFDYLESPVSDGTIEENFE 83
PS S F ++ F S+L A L G+ VP E GT +
Sbjct: 230 PSSSKFAEFGRFYVGRRFPPSDLGAFLAGE---------RVPTATPEDAADGGTGGTHDA 280
Query: 84 EELINAPMGQLDSLAATCTDDELKDEED 111
EE ++
Sbjct: 281 EEFGEHGHHGGHPGGEDGEHPHGHEDSG 308
>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated.
Length = 470
Score = 29.8 bits (68), Expect = 1.2
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 79 EENFEEELINAPMGQLDSLAATCTDDELKDEEDFADVASYGIVDVVGDD 127
EE ++L++ G LA + +K ED A+ A ++D+ GD+
Sbjct: 421 EEKLADDLLSLE-GLDRELAFKLAEKGIKTLEDLAEQAVDELIDIEGDE 468
>gnl|CDD|233268 TIGR01093, aroD, 3-dehydroquinate dehydratase, type I. This model
detects 3-dehydroquinate dehydratase, type I, either as
a monofunctional protein or as a domain of a larger,
multifunctional protein. It is often found fused to
shikimate 5-dehydrogenase (EC 1.1.1.25), and sometimes
additional domains. Type II 3-dehydroquinate
dehydratase, designated AroQ, is described by the model
TIGR01088 [Amino acid biosynthesis, Aromatic amino acid
family].
Length = 228
Score = 28.5 bits (64), Expect = 3.1
Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 13/129 (10%)
Query: 41 FDDSELQASLNGDAEEIKVFDTPVPFDYLESPVSDGTIEENFEEELINAPMGQLDSLAAT 100
D ++ E++ P + +S+G EEE + DS
Sbjct: 35 LKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNEEEYLEELKRAADSPGPD 94
Query: 101 CTDDELKDEEDFADVASYGIVDVVGDDMFGRKLIVLSA---CKLPSNKELDHGRLLGYLT 157
D EL +D ++ G I++S K PS +E+ RL L+
Sbjct: 95 FVDIELFLPDDAVKE-------LINIAKKGGTKIIMSYHDFQKTPSWEEIV-ERLEKALS 146
Query: 158 YVLD--KFV 164
Y D K
Sbjct: 147 YGADIVKIA 155
>gnl|CDD|215270 PLN02490, PLN02490, MPBQ/MSBQ methyltransferase.
Length = 340
Score = 27.5 bits (61), Expect = 6.6
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 50 LNGDAEEIKVFDTPVPFDYLESPVSDGTIE 79
+ GDAE D P P DY + VS G+IE
Sbjct: 165 IEGDAE-----DLPFPTDYADRYVSAGSIE 189
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein;
Provisional.
Length = 2102
Score = 27.8 bits (62), Expect = 7.0
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 98 AATCTDDELKDEEDFAD-VASYGIVDVVGDDMFGRKLIVLSAC 139
A C D L D+E A+ VA++G V + + G ++ A
Sbjct: 1378 AGVCALDRLLDDEQLAELVAAHGAVVPLVGLVVGTNYVLHEAA 1420
>gnl|CDD|218520 pfam05241, EBP, Emopamil binding protein. Emopamil binding protein
(EBP) is as a gene that encodes a non-glycosylated type
I integral membrane protein of endoplasmic reticulum and
shows high level expression in epithelial tissues. The
EBP protein has emopamil binding domains, including the
sterol acceptor site and the catalytic centre, which
show Delta8-Delta7 sterol isomerase activity. Human
sterol isomerase, a homologue of mouse EBP, is suggested
not only to play a role in cholesterol biosynthesis, but
also to affect lipoprotein internalisation. In humans,
mutations of EBP are known to cause the genetic disorder
of X-linked dominant chondrodysplasia punctata (CDPX2).
This syndrome of humans is lethal in most males, and
affected females display asymmetric hyperkeratotic skin
and skeletal abnormalities.
Length = 193
Score = 26.9 bits (60), Expect = 9.3
Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 171 VYFHYGLTSKNKPSLSWLWSAYRAFDRKY 199
V H S + LW Y D +Y
Sbjct: 53 VLNHAFSASSQDL-FAQLWKEYAKSDSRY 80
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.138 0.407
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,066,648
Number of extensions: 1274418
Number of successful extensions: 1048
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1042
Number of HSP's successfully gapped: 20
Length of query: 242
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 148
Effective length of database: 6,768,326
Effective search space: 1001712248
Effective search space used: 1001712248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)